RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16135
(332 letters)
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 269 bits (690), Expect = 3e-87
Identities = 100/181 (55%), Positives = 132/181 (72%)
Query: 35 HGIIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGS 94
H I RV KT++EL+V+RY ++ISSEAHR VM+ V GM EY+ E++F+HY GG
Sbjct: 178 HPEIVECRVFKTDMELEVLRYTNKISSEAHREVMKAVKVGMKEYELESLFEHYCYSRGGM 237
Query: 95 RHVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNG 154
RH +YTCIC SG N AVLHYGHA APND+ + +GDM +FDMG Y +ASDITCS+P NG
Sbjct: 238 RHSSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFDMGGEYYCFASDITCSFPANG 297
Query: 155 KFTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELME 214
KFT Q +Y AVL ++RAVM A KPGV W DMH LA+++ L +L +G+L G++D +++
Sbjct: 298 KFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQ 357
Query: 215 E 215
Sbjct: 358 A 358
Score = 84.0 bits (208), Expect = 3e-18
Identities = 35/65 (53%), Positives = 48/65 (73%)
Query: 215 ESYFHWAFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEYKEKYQVDEVY 274
ES+FHWAFGV EP YGVI++ TG+S LF PRL + WMG++ + + +KEKY VD+V
Sbjct: 69 ESFFHWAFGVTEPGCYGVIDVDTGKSTLFVPRLPASHATWMGKIHSKEHFKEKYAVDDVQ 128
Query: 275 FSDEV 279
+ DE+
Sbjct: 129 YVDEI 133
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 251 bits (643), Expect = 1e-80
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 6/180 (3%)
Query: 37 IIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRH 96
+ Y R KT+ ELD MR A++++ H++ + G E+ + G
Sbjct: 152 YLHYQRAYKTDYELDCMREANKLAVAGHKAAEQAFREGKSEFDINLAYAAAS--RQGDND 209
Query: 97 VAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKF 156
V YT I A + ++LHY + + + D G++Y GYA+DIT +Y G
Sbjct: 210 VPYTSIVALNEHASILHYMQC---DTVAPKESRSFLIDAGANYHGYAADITRTYAQEGVH 266
Query: 157 TEKQ-AYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEE 215
+ AV ++++ KPGV++ D+H LA+ + L D G++ T E++E
Sbjct: 267 NSAMFRDLIQAVDKVTLTLVDSLKPGVAYTDIHLLAHDGIAQILHDTGMVNLTPPEIVEM 326
Score = 65.1 bits (159), Expect = 6e-12
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 215 ESYF-HWAFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEY-KEKYQVDE 272
F W + P+ + V+ +++F ED+ W P +++ + + +
Sbjct: 53 NPQFKAWVPVIDNPNCWLVVNGVDKPTLIFYRP--EDF--WHKVPPEPNDFWTDSFDIKL 108
Query: 273 VYFSDEVMYSRAYLHDITA 291
+ +D V Y A
Sbjct: 109 LQQADAVEKFLPYDKSRFA 127
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 249 bits (637), Expect = 6e-80
Identities = 64/180 (35%), Positives = 104/180 (57%), Gaps = 6/180 (3%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+ K+ E+ V+R A I++ AH M K GM+EY E H+ G+R+ +Y
Sbjct: 173 RLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEI-HHEFNRHGARYPSYNT 231
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I SG NG +LHY N+ + DGD+++ D G Y GYA DIT ++PVNGKFT+ Q
Sbjct: 232 IVGSGENGCILHYTE----NECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 287
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELME-ESYFHW 220
IY+ VL + + +PG S +++ ++++S L+ +G+L+G +DEL+ ++ +
Sbjct: 288 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 347
Score = 70.0 bits (172), Expect = 1e-13
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 215 ESYFHWAFGVYEPDFYGVIE---MTTGRSILFAPRLSEDYVVWMGQLPTLDEYKEKYQVD 271
S F + G EP+ V+ T S+LF +W G+ D EK VD
Sbjct: 46 NSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVD 105
Query: 272 EVYFSDE 278
E
Sbjct: 106 RALAFSE 112
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 247 bits (632), Expect = 3e-79
Identities = 61/185 (32%), Positives = 105/185 (56%), Gaps = 7/185 (3%)
Query: 35 HGIIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGS 94
+ I RV KT+ E+++++ A ++ + +V++ A M EY+ EA F + L G
Sbjct: 162 YPNICELRVFKTDEEIEIIKEAIAVTKDGIYNVLKHAKADMMEYELEAQF-DFTLKSSGI 220
Query: 95 RHVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNG 154
+H A+ I ASG N VLHY ND ++ +GD+++ D+G+ Y +DI+ ++P NG
Sbjct: 221 KHHAFNTILASGKNATVLHY----EDNDAQIQNGDLVLLDLGAQKDYYNADISYTFPANG 276
Query: 155 KFTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELME 214
F+ +Q IYN VL+A + E KPG+ + ++ A KV+ +GL++ DE +
Sbjct: 277 TFSSRQKQIYNIVLNALKETTEIIKPGLKFAALNEHAKKVLAEGCKAVGLIQE--DEELS 334
Query: 215 ESYFH 219
+ Y+H
Sbjct: 335 KYYYH 339
Score = 74.2 bits (183), Expect = 5e-15
Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 215 ESYFHWAFGVYEPDFYGVIEMT--TGRSILFAPRLSEDYVVWMGQLPTLDEYKEKYQVDE 272
F++ G+ EP+ +++ + LF + W+G+ + +E ++ + +
Sbjct: 44 NRNFYYVTGIDEPNVIFMLKKFGNSVEETLFIEKSDPVMEKWVGKTVSNEEAEKISGIKK 103
Query: 273 VYFSDEVMYSRAYLHDITAKE 293
V + D + +I E
Sbjct: 104 VIYLDSF---EKTMSNIFFTE 121
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 244 bits (624), Expect = 4e-77
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 7/179 (3%)
Query: 37 IIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRH 96
Y R KT+ EL MR A++I+ + H++ G E++ + +
Sbjct: 152 FYHYHRAYKTQYELACMREANKIAVQGHKAARDAFFQGKSEFEIQQAYLLATQ--HSEND 209
Query: 97 VAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKF 156
Y I A N A+LHY H + + D G+++ GYA+DIT +Y G+
Sbjct: 210 NPYGNIVALNENCAILHYTH---FDRVAPATHRSFLIDAGANFNGYAADITRTYDFTGEG 266
Query: 157 TEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEE 215
+ + + A+M PG + ++H ++ V L D ++ + DE++ +
Sbjct: 267 EFAE--LVATMKQHQIALMNQLAPGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIVAK 323
Score = 61.3 bits (149), Expect = 1e-10
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 215 ESYF-HWAFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEY-KEKYQVDE 272
F W + P + V T ++F D+ W +EY + + ++
Sbjct: 53 NPQFKAWLPVIDNPHCWIVANGTDKPKLIFYRP--VDF--WHKVPDEPNEYWADYFDIEL 108
Query: 273 VYFSDEVMYSRAYLHDITA 291
+ D+V Y A
Sbjct: 109 LVKPDQVEKLLPYDKARFA 127
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 125 bits (317), Expect = 1e-33
Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 31 LIIYHGIIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILY 90
+IR R+IK+E E+ ++ A I+ +A + + +++ G E + A Y++
Sbjct: 114 FKKVDDVIRDMRIIKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKV-EYLMK 172
Query: 91 VGGSRHVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSY 150
+ G+ A+ I ASG A+ H +DKR+ GD++V D+G+ Y Y SDIT +
Sbjct: 173 MNGAEKPAFDTIIASGYRSALPHG----VASDKRIERGDLVVIDLGALYQHYNSDITRTI 228
Query: 151 PVNGKFTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKV 194
V G EKQ IY VL A + +E+AKPG++ ++ +A +
Sbjct: 229 VV-GSPNEKQKEIYEIVLEAQKKAVESAKPGITAKELDSIARNI 271
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 125 bits (317), Expect = 1e-33
Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 6/159 (3%)
Query: 36 GIIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSR 95
++ R++K E E++ ++ A IS A ++++ AGM E + A+ + Y + G+
Sbjct: 125 DEVKQMRMVKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLE-YTMRKEGAE 183
Query: 96 HVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGK 155
VA+ I ASG A+ H G AS DK V GD++V D G++Y Y +DIT + G+
Sbjct: 184 GVAFDTIVASGCRSALPH-GKAS---DKVVERGDVIVIDFGATYENYCADITRVVSI-GE 238
Query: 156 FTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKV 194
+++ +++ VL A ++ AK GV+ + +A +
Sbjct: 239 PSDEVKEVHSIVLEAQERALKIAKAGVTGKLLDSVAREF 277
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 125 bits (315), Expect = 3e-33
Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 36 GIIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSR 95
G++ R+IKT+ E+ +++ A++I+ A ++ + G+ E + + + + G+
Sbjct: 122 GLVEKLRLIKTDSEIKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELE-FFMRKQGAT 180
Query: 96 HVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGK 155
++ I ASG A+ H G AS +K + GD + D G+ Y GY SDIT + V G+
Sbjct: 181 SSSFDIIVASGLRSALPH-GVAS---EKVIETGDFVTLDFGAYYKGYCSDITRTIAV-GE 235
Query: 156 FTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKV 194
++K IYN VL A + K G++ + L
Sbjct: 236 PSDKLKEIYNIVLEAQLRGVNGIKAGLTGREADALTRDY 274
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 123 bits (310), Expect = 2e-32
Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 7/159 (4%)
Query: 36 GIIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSR 95
+I+ R+IK + E+ +M +ASRI+ + ++ GM E + + I S
Sbjct: 123 SLIKELRMIKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIR--ELSD 180
Query: 96 HVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGK 155
+A+ I ASG N A H+ P ++++ GD+++ D G+ + GY SDIT + + G+
Sbjct: 181 GIAFEPIVASGENAANPHH----EPGERKIRKGDIIILDYGARWKGYCSDITRTIGL-GE 235
Query: 156 FTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKV 194
E+ IY V A + +A + G+ D+ A +V
Sbjct: 236 LDERLVKIYEVVKDAQESAFKAVREGIKAKDVDSRAREV 274
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 120 bits (302), Expect = 2e-31
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 36 GIIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSR 95
++R R++K E+D + A H V + G E Q A I+ G S
Sbjct: 142 DVLRQLRMVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAEGHSA 201
Query: 96 HVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSY-CGYASDITCSYPVNG 154
I SG +GA H+ +D+++ GD++V D+G +Y GY SD T +Y + G
Sbjct: 202 --VAFVIVGSGPHGADPHH----GYSDRKLQVGDIVVVDIGGTYEPGYYSDSTRTYSI-G 254
Query: 155 KFTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKV 194
+ A Y+A+ A RA ++A +PGV+ + A V
Sbjct: 255 DPSPDVAQQYSALQRAQRAAVDAVRPGVTAAQVDAAARDV 294
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 121 bits (304), Expect = 3e-31
Identities = 40/189 (21%), Positives = 70/189 (37%), Gaps = 27/189 (14%)
Query: 36 GIIRYSRVIKTELELDVMRYASRISSEAHRSVM----------------RKVSAGM-YEY 78
+ IK E EL ++ ASR+S K S M
Sbjct: 169 LGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESLI 228
Query: 79 QAEAIFKHYILYVG----GSRHVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFD 134
EA F+ L +G YT I SGG+ + A D R GD+++
Sbjct: 229 DNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPS----AITDDRNLHGDVVLCS 284
Query: 135 MGSSYCGYASDITCSYPVNGKFTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKV 194
+G Y Y S++ +Y + +Q Y+ +++ + + E + G D++ +
Sbjct: 285 LGFRYKSYCSNVGRTYLFDP--DSEQQKNYSFLVALQKKLFEYCRDGAVIGDIYTKILGL 342
Query: 195 VLSKLLDIG 203
+ +K D+
Sbjct: 343 IRAKRPDLE 351
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 117 bits (295), Expect = 3e-30
Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 10/164 (6%)
Query: 36 GIIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQ-----AEAIFKHYILY 90
R+IK+ E ++R+ +RI+ +V+ + + EY+ +A+ +
Sbjct: 149 AACMRMRMIKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADT 208
Query: 91 VGGSRHVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSY 150
+ SG N H ++VN GD+L + GY + + +
Sbjct: 209 FEDVELMDTWTWFQSGINTDGAHN----PVTTRKVNKGDILSLNCFPMIAGYYTALERTL 264
Query: 151 PVNGKFTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKV 194
+ ++ ++ + + A ++ KPG D+ N++
Sbjct: 265 FL-DHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEI 307
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 117 bits (295), Expect = 4e-30
Identities = 31/164 (18%), Positives = 62/164 (37%), Gaps = 10/164 (6%)
Query: 36 GIIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSR 95
+ + RVIK+ E B++R +RIS + +SAG+ EY+ ++
Sbjct: 149 ZPVMWZRVIKSSEEZBLIRZGARISDIGGAATAAAISAGVPEYEVAIATTBAMVRZIARB 208
Query: 96 H-----VAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSY 150
+ SG N H B+ V GD+L + GY + + +
Sbjct: 209 FPYVELMDTWIWFQSGINTDGAHN----PVTBRVVZRGDILSLNCFPMIFGYYTALERTL 264
Query: 151 PVNGKFTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKV 194
+ + + I+ + +R +Z KPG D+ N +
Sbjct: 265 FL-ZZVBDASLZIWZKNTAVHRRGLZLIKPGARCKDIASELNBM 307
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 114 bits (287), Expect = 8e-29
Identities = 24/196 (12%), Positives = 64/196 (32%), Gaps = 33/196 (16%)
Query: 36 GIIRYSRVIKTELELDVMRYASRISSEA-------------------HRSVMRKVSAGM- 75
+ +K E + +S+ S + + + K+ +
Sbjct: 169 LGLSKVWEVKDVNEQAFLSVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDKIENKID 228
Query: 76 -------YEYQAEAIFKHYILYVGGSRHVAYTCICASGGNGAVLHYGHASAPNDKRVNDG 128
A+ + Y+ I SG + A + ++
Sbjct: 229 DVKFLKQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRV--SA-RSTNDQLYGN 285
Query: 129 DMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAYIYNAVLSANRAVMEAA-KPGVSWVDM 187
++ G Y Y S+IT ++ ++ +E+ A Y+ +L+ + ++ KPG + ++
Sbjct: 286 GCILASCGIRYNNYCSNITRTFLIDP--SEEMANNYDFLLTLQKEIVTNILKPGRTPKEV 343
Query: 188 HHLANKVVLSKLLDIG 203
+ + + ++
Sbjct: 344 YESVIEYIEKTKPELV 359
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 87.7 bits (217), Expect = 2e-19
Identities = 33/160 (20%), Positives = 53/160 (33%), Gaps = 15/160 (9%)
Query: 36 GIIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMY-----EYQAEAIFKHYILY 90
+ +R +K E+ MR AS A R + + + E AI +
Sbjct: 221 EVTEKARSVKGPDEIRAMRCASHACEVAVRKMEDFARSKVGDGVTCENDIWAILHSENVR 280
Query: 91 VGGSRHVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGS-SYCGYASDITCS 149
G T + ASG + +++ FD G +DI+ S
Sbjct: 281 RG--GEWIETRLLASGPRSNPWFQ----ECGPRVCQRNEIISFDTDLVGAYGICTDISRS 334
Query: 150 YPVNGKFTEKQAYIYNAVLS--ANRAVMEAAKPGVSWVDM 187
+ + G + IY R ME KPGV ++
Sbjct: 335 WWI-GDQKPRADMIYAMQHGVEHIRTNMEMLKPGVMIPEL 373
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 63.0 bits (153), Expect = 4e-11
Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 15/165 (9%)
Query: 44 IKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQ----AEAIFKHYILYVGGSRHVAY 99
+E + R A+ + + VM + GM + E + I G + +A+
Sbjct: 160 QASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAF 219
Query: 100 -TCICASGGNGAVLHYGHASAPNDKRV-NDGDMLVFDMGSSYCGYASDITCSYPVNGKFT 157
T N HY D V D+ D G+ G D + N K+
Sbjct: 220 PTGCSL---NNCAAHY--TPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPKYD 274
Query: 158 EKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDI 202
+ AV A ++ A V D+ +V+ S ++I
Sbjct: 275 T----LLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEI 315
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 59.4 bits (144), Expect = 4e-10
Identities = 32/171 (18%), Positives = 66/171 (38%), Gaps = 17/171 (9%)
Query: 39 RYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGM---------YEYQAEAIFKHYIL 89
+ + I +L + + I++ RS++ S+G+ E K +
Sbjct: 14 QQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKK 73
Query: 90 YVGGSRHVAY-TCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITC 148
+ +A+ T I N V H+ + D + +GD++ D+G G+ +++
Sbjct: 74 EKEMKKGIAFPTSISV---NNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAH 130
Query: 149 SYPVNGKF----TEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVV 195
++ V+ T ++A + A A + KPG + NKV
Sbjct: 131 TFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVA 181
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 58.3 bits (141), Expect = 9e-10
Identities = 25/166 (15%), Positives = 46/166 (27%), Gaps = 15/166 (9%)
Query: 44 IKTELELDVMRYASRISSEAHRSVMRKVSAGMY-----EYQAEAIFKHYILYVGGSRHVA 98
L R A+ A V V G+ ++ +
Sbjct: 41 FTESDILQDARRAAEAHRRARYRVQSIVRPGITLLEIVRSIEDSTRTLLKGERNNG--IG 98
Query: 99 Y-TCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFT 157
+ + N HY D + + D+L D G+ G D +
Sbjct: 99 FPAGMSM---NSCAAHYTVNPGEQDIVLKEDDVLKIDFGTHSDGRIMDSAFTVAFKENLE 155
Query: 158 EKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIG 203
+ A +++ V D+ N+V+ S ++IG
Sbjct: 156 P----LLVAAREGTETGIKSLGVDVRVCDIGRDINEVISSYEVEIG 197
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 52.2 bits (126), Expect = 5e-08
Identities = 38/153 (24%), Positives = 54/153 (35%), Gaps = 28/153 (18%)
Query: 43 VIKTELELDVMRYASRISSEAHRSVMRKVSAGM-------------YEYQAEAIFKHYIL 89
+T ELD M A I A +V AG+ E A F Y
Sbjct: 33 EQRTPGELDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHG 92
Query: 90 YVGGSRHVAYTCICASGGNGAVLHYGHASAPNDKRV-NDGDMLVFDMGSSYCGYASDITC 148
+ IC+S N V+H G P+ V DGD++ D G+ G+ D
Sbjct: 93 FPA--------SICSS-VNDQVVH-G---IPSATAVLADGDLVSIDCGAILDGWHGDSAW 139
Query: 149 SYPVNGKFTEKQAYIYNAVLSANRAVMEAAKPG 181
++ V G + A + A + A PG
Sbjct: 140 TFAV-GTVIPSDEALSEATRLSMEAGIAAMIPG 171
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 51.1 bits (123), Expect = 1e-07
Identities = 28/152 (18%), Positives = 54/152 (35%), Gaps = 13/152 (8%)
Query: 48 LELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAY-TCICASG 106
++ + + A I+ + ++ GM + + I+ +GG A+ +
Sbjct: 1 MDTEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGG--KPAFPVNLSI-- 56
Query: 107 GNGAVLHYGHASAPNDKRV-NDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAYIYN 165
N HY D V +GD L D+G G+ +D + V + E +
Sbjct: 57 -NEIAAHY--TPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDE----LME 109
Query: 166 AVLSANRAVMEAAKPGVSWVDMHHLANKVVLS 197
A A A + A+ GV ++ +
Sbjct: 110 AAKEALNAAISVARAGVEIKELGKAIENEIRK 141
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 48.3 bits (116), Expect = 1e-06
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 28/131 (21%)
Query: 43 VIKTELELDVMRYASRISSEAHRSVMRKVSAGM-------------YEYQAEAIFKHYIL 89
IKT E++ M+ A + + A R V + + G + + + FK Y
Sbjct: 15 RIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGG 74
Query: 90 YVGGSRHVAYTCICASGGNGAVLHYGHASAPNDKRV-NDGDMLVFDMGSSYCGYASDITC 148
Y C S N V+H G P ++V +GD++ D+G+ Y G D
Sbjct: 75 YKY--------ATCVS-VNEEVVH-G---LPLKEKVFKEGDIVSVDVGAVYQGLYGDAAV 121
Query: 149 SYPVNGKFTEK 159
+Y V G+ E+
Sbjct: 122 TYIV-GETDER 131
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 49.2 bits (118), Expect = 1e-06
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I ++G GA++HY ++ ++ ++ + D G+ Y +D+T + T +
Sbjct: 384 ISSTGPTGAIIHY-APVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHF-ETPTAYEK 441
Query: 162 YIYNAVLSANRAVMEA 177
+ VL + AV A
Sbjct: 442 ECFTYVLKGHIAVSAA 457
>3tb5_A Methionine aminopeptidase; hydrolase, metalloprotease, enter
feacalis; HET: CIT; 2.30A {Enterococcus faecalis}
Length = 264
Score = 47.1 bits (113), Expect = 2e-06
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 43 VIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGG-SRHVAYT- 100
+K+ E+++M + + ++ HR + + G+ + E + +I GG + + Y
Sbjct: 3 TLKSPREIEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEG 62
Query: 101 ---CICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFT 157
C S N + H G P K + DGD++ DM G SD SY V G+ T
Sbjct: 63 YKYATCCS-INDEICH-G---FPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVV-GEST 116
Query: 158 EK 159
+
Sbjct: 117 PE 118
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 46.3 bits (111), Expect = 5e-06
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 27/132 (20%)
Query: 43 VIKTELELDVMRYASRISSEAHRSVMRKVSAGM---------YEYQAE--AI--FKHYIL 89
++KTE EL ++ I ++ ++ G+ E E AI H
Sbjct: 2 IVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDEN 61
Query: 90 YVGGSRHVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCS 149
+ G C S N V H G P+ + + +GD++ D+ + GY +D S
Sbjct: 62 FPG--------QTCIS-VNEEVAH-G---IPSKRVIREGDLVNIDVSALKNGYYADTGIS 108
Query: 150 YPVNGKFTEKQA 161
+ V G+ +
Sbjct: 109 FVV-GESDDPMK 119
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.006
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 292 KEWAFKSLTHPLGLFAP--TPKLRI 314
K+ A K L L L+A P L I
Sbjct: 19 KQ-ALKKLQASLKLYADDSAPALAI 42
Score = 27.6 bits (60), Expect = 3.6
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 20/43 (46%)
Query: 206 RGTIDELMEESYFHWAFGVYEPDFYGVIEMTTGRSILFAPRLS 248
+ + +L ++ + +Y D S AP L+
Sbjct: 19 KQALKKL--QA----SLKLYADD-----------S---APALA 41
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.064
Identities = 33/188 (17%), Positives = 60/188 (31%), Gaps = 44/188 (23%)
Query: 141 GYASDITCSYPVN--GKF--------TEKQAYIYNAVLSA-----NRAVMEAAKPGVSWV 185
G+A+D + P GKF + ++ VL+ +E
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN------- 99
Query: 186 DMHHLANKVVLSKLLDIGLLRGTIDELMEESYFHWAFGVYEPDFYGVIEMTTGRSILFAP 245
D+H LA K++ + + I ++Y P S LF
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELI-----KNYITARIMAKRP------FDKKSNSALF-- 146
Query: 246 RLSED-----YVVWMGQ---LPTLDEYKEKYQVDEVYFSDEVMYSRAYLHDITAKEWAFK 297
R + ++ GQ +E ++ YQ V D + +S L ++ +
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 298 SLTHPLGL 305
+ GL
Sbjct: 207 KV-FTQGL 213
Score = 33.1 bits (75), Expect = 0.17
Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 69/224 (30%)
Query: 74 GMYEYQ----AEAIF----KHYILYVGGSRHVAYTCICASGGNGAVLHYGHASAPNDKRV 125
GM Y+ A+ ++ H+ G S I + +H+G KR+
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFS----ILDIVINNPVNLTIHFG---GEKGKRI 1684
Query: 126 NDGDM-LVFDMGSSYCGYASDI-------TCSYPVNG--------KFTEKQAYIYNAVLS 169
+ ++F+ I + SY +FT Q A+
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT--QP----ALTL 1738
Query: 170 ANRAVMEAAKP-GVSWVDM----H---------HLANKVVLS-----KLLDIGLLRG-TI 209
+A E K G+ D H LA+ V+S +++ RG T+
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD--VMSIESLVEVV---FYRGMTM 1793
Query: 210 DELMEESYFHWAFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVV 253
+ YG+I + GR + + YVV
Sbjct: 1794 QVAVPR-------DELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2);
beta-barrel, structural genomics, PSI-2, protein
structure initiative; NMR {Archaeoglobus fulgidus}
Length = 146
Score = 28.0 bits (63), Expect = 2.4
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 172 RAVMEAAKPGVSWVDMHHLANKVVLSKL 199
A G+ ++ M AN V+
Sbjct: 85 FAKKGDVPKGMIFIPMGPYANMVIDPST 112
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 28.7 bits (65), Expect = 2.8
Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 11/144 (7%)
Query: 44 IKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGG-SRHVAYT-- 100
I TE + MR A ++++E + V + + ++I + Y
Sbjct: 8 IHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKGF 67
Query: 101 --CICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTE 158
IC S N V H G PNDK + +GD++ D+ G+ D + Y V G
Sbjct: 68 PKSICTS-INHVVCH-G---IPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYV-GDVAI 121
Query: 159 KQAYIYNAVLSANRAVMEAAKPGV 182
K + A +E +PG
Sbjct: 122 KPKRLIQVTYDAMMKGIEVVRPGA 145
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 27.1 bits (61), Expect = 8.6
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 13/146 (8%)
Query: 44 IKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSR--HVAYT- 100
IKT +++ MR A R+++E + V G+ + + I YI+ + + Y
Sbjct: 4 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 63
Query: 101 ---CICASGGNGAVLHYGHASAPNDKRV-NDGDMLVFDMGSSYCGYASDITCSYPVNGKF 156
+C S N V H G P+D ++ DGD++ D+ G+ D + + V GK
Sbjct: 64 YPKSVCIS-INEVVCH-G---IPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIV-GKP 117
Query: 157 TEKQAYIYNAVLSANRAVMEAAKPGV 182
T + + + KPG+
Sbjct: 118 TIMGERLCRITQESLYLALRMVKPGI 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.420
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,363,963
Number of extensions: 328538
Number of successful extensions: 881
Number of sequences better than 10.0: 1
Number of HSP's gapped: 820
Number of HSP's successfully gapped: 37
Length of query: 332
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 238
Effective length of database: 4,077,219
Effective search space: 970378122
Effective search space used: 970378122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (25.7 bits)