RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16136
(332 letters)
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 210 bits (536), Expect = 5e-67
Identities = 73/166 (43%), Positives = 110/166 (66%), Gaps = 6/166 (3%)
Query: 50 LDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTCICASGGNG 109
+++MR A IS+EAHR+ M+ GM EY+ EA F++ G +Y S N
Sbjct: 1 IELMRKACDISAEAHRAAMKASRPGMSEYELEAEFEYEFRSRGARLAYSYIVAAGS--NA 58
Query: 110 AVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAYIYNAVLS 169
A+LHY H ND+ + DGD+++ D G+ Y GYASDIT ++PVNGKFT++Q +Y AVL+
Sbjct: 59 AILHYVH----NDQPLKDGDLVLIDAGAEYGGYASDITRTFPVNGKFTDEQRELYEAVLA 114
Query: 170 ANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEE 215
A +A + A KPGVS+ D+H LA++V+ L ++G+L+G +DE++E
Sbjct: 115 AQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGILKGDVDEIVES 160
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 149 bits (379), Expect = 4e-42
Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 40/244 (16%)
Query: 31 LIIYHGIIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILY 90
L+ ++ R+IK+ E+ +R A+ I+ A + + + GM E + A Y L
Sbjct: 141 LVDASDLVDRLRLIKSPAEIAKIRKAAEIADAALEAALEAIRPGMTEAEIAAEL-EYALR 199
Query: 91 VGGSRHVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSY 150
GG+ ++ I ASG N A+ HY P+D+++ DGD+++ D+G Y GY SDIT ++
Sbjct: 200 KGGAEGPSFDTIVASGENAALPHY----TPSDRKLRDGDLVLIDLGGVYNGYCSDITRTF 255
Query: 151 PVNGKFTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGT-- 208
P+ GK +++Q IY AVL A A + A +PGV+ ++ A +V+ + L GT
Sbjct: 256 PI-GKPSDEQREIYEAVLEAQEAAIAAIRPGVTGGEVDAAARQVLEKAGYGLYFLHGTGH 314
Query: 209 ------------------IDELMEES-YFHWAFGVYEPDFYGVIEMTTGRSILFAPRLSE 249
D +E F G+Y P GV R+ +
Sbjct: 315 GVGFVLDVHEHPQYLSPGSDTTLEPGMVFSIEPGIYIPGGGGV-------------RIED 361
Query: 250 DYVV 253
+V
Sbjct: 362 TVLV 365
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 144 bits (365), Expect = 7e-42
Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 5/158 (3%)
Query: 51 DVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTCICASGGNGA 110
++MR A+RI++ A + + + G+ E + A + L GG+R A+ I ASG N A
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGVTERELAAELEAAFLARGGARGPAFPPIVASGPNAA 60
Query: 111 VLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAYIYNAVLSA 170
V HY P+D+ + DGD+++ D+G+ Y GY SDIT ++ V GK T +Q +Y AVL A
Sbjct: 61 VPHY----IPSDRVLKDGDLVLIDVGAEYDGYHSDITRTF-VVGKPTPEQRELYEAVLEA 115
Query: 171 NRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGT 208
A + A KPGV+ D+ A +V+ G
Sbjct: 116 QEAAIAAVKPGVTGGDVDAAAREVLEEGGYGEYFPHGL 153
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 144 bits (365), Expect = 1e-39
Identities = 72/201 (35%), Positives = 110/201 (54%), Gaps = 15/201 (7%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+ K+ E+ V+R A IS+ AH M K GM+EYQ E H G+R+ +Y
Sbjct: 171 RLFKSPEEIAVLRRAGEISALAHTRAMEKCRPGMFEYQLEGEIHHEFNR-HGARYPSYNT 229
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I SG NG +LHY N+ + DGD+++ D G Y GYA DIT ++PVNGKFT Q
Sbjct: 230 IVGSGENGCILHY----TENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQR 285
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEES----Y 217
IY+ VL + + +PG S ++ ++++S L+ +G+L+G +D+L+ E+ +
Sbjct: 286 EIYDIVLESLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPF 345
Query: 218 F-----HW-AFGVYEPDFYGV 232
F HW V++ YG
Sbjct: 346 FMHGLSHWLGLDVHDVGVYGQ 366
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 103 bits (259), Expect = 2e-26
Identities = 46/146 (31%), Positives = 85/146 (58%), Gaps = 6/146 (4%)
Query: 50 LDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTCICASGGNG 109
++++R A+RI+ +A ++ + GM E + A ++++ +G ++ I ASG N
Sbjct: 1 IELLRKAARIADKAFEELLEFIKPGMTEREVAAELEYFMRKLGAEG-PSFDTIVASGPNS 59
Query: 110 AVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAYIYNAVLS 169
A+ H G S D+++ +GD+++ D G+ Y GY SDIT + V G+ +++ IY VL
Sbjct: 60 ALPH-GVPS---DRKIEEGDLVLIDFGAIYDGYCSDITRTVAV-GEPSDELKEIYEIVLE 114
Query: 170 ANRAVMEAAKPGVSWVDMHHLANKVV 195
A +A ++A KPGV+ ++ A V+
Sbjct: 115 AQQAAIKAVKPGVTAKEVDKAARDVI 140
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 94.1 bits (234), Expect = 7e-23
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 7/159 (4%)
Query: 50 LDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTCICASGGNG 109
+ +R A+ I+ A + + G+ E + A + + GG + A I SG
Sbjct: 1 IARLRKAAEIAEAAMAAAAEAIRPGVTEAEVAAAIEQALRAAGG--YPAGPTIVGSGART 58
Query: 110 AVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAYIYNAVLS 169
A+ HY P+D+R+ +GD+++ D+G Y GY +D+T ++ + G+ +++Q +Y AV
Sbjct: 59 ALPHYR----PDDRRLQEGDLVLVDLGGVYDGYHADLTRTFVI-GEPSDEQRELYEAVRE 113
Query: 170 ANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGT 208
A A + A +PGV+ ++ A +V+ L T
Sbjct: 114 AQEAALAALRPGVTAEEVDAAAREVLEEHGLGPNFGHRT 152
>gnl|CDD|237444 PRK13607, PRK13607, proline dipeptidase; Provisional.
Length = 443
Score = 84.6 bits (210), Expect = 3e-18
Identities = 62/193 (32%), Positives = 88/193 (45%), Gaps = 20/193 (10%)
Query: 27 IINYLIIYHGIIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKH 86
+++YL H Y R KT+ EL MR A +I+ HR+ AGM E+ I
Sbjct: 151 VLDYL---H----YHRAYKTDYELACMREAQKIAVAGHRAAKEAFRAGMSEFD---INLA 200
Query: 87 YILYVG-GSRHVAYTCICASGGNGAVLHYGHAS--APNDKRVNDGDMLVFDMGSSYCGYA 143
Y+ G V Y I A + AVLHY AP + R L+ D G+ Y GYA
Sbjct: 201 YLTATGQRDNDVPYGNIVALNEHAAVLHYTKLDHQAPAEMR----SFLI-DAGAEYNGYA 255
Query: 144 SDITCSYPVNGKFTEKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIG 203
+DIT +Y + A I V A++ KPGVS+VD+H ++ + L
Sbjct: 256 ADITRTYAAKED-NDFAALI-KDVNKEQLALIATMKPGVSYVDLHIQMHQRIAKLLRKFQ 313
Query: 204 LLRGTIDELMEES 216
++ G +E M E
Sbjct: 314 IVTGLSEEAMVEQ 326
>gnl|CDD|218491 pfam05195, AMP_N, Aminopeptidase P, N-terminal domain. This domain
is structurally very similar to the creatinase
N-terminal domain (pfam01321). However, little or no
sequence similarity exists between the two families.
Length = 134
Score = 74.2 bits (183), Expect = 2e-16
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 215 ESYFHWAFGVYEPDFYGVIE-MTTGRSILFAPRLSEDYVVWMGQLPTLDEYKEKYQVDEV 273
+S F++ G EPD V++ TG+S LF P +Y +W G+ P +E KEK+ VDE
Sbjct: 44 DSDFYYLTGFNEPDAVLVLKDGDTGKSTLFVPPKDPEYEIWDGRRPGPEEAKEKFGVDEA 103
Query: 274 YFSDE 278
Y DE
Sbjct: 104 YPIDE 108
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 77.7 bits (191), Expect = 4e-16
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 9/158 (5%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R IKT E++ +R A I+ + R + AGM E + A + + + G+ ++
Sbjct: 125 RQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAELE-WFMRQQGAEKASFDT 183
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I ASG GA+ H G AS DK V G+ + D G+ Y GY SD+T + VNG+ ++
Sbjct: 184 IVASGWRGALPH-GKAS---DKIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAES 239
Query: 162 Y----IYNAVLSANRAVMEAAKPGVSWVDMHHLANKVV 195
+ +Y VL A A + A +PGV + A +V+
Sbjct: 240 HPLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVI 277
>gnl|CDD|198079 smart01011, AMP_N, Aminopeptidase P, N-terminal domain. This
domain is structurally very similar to the creatinase
N-terminal domain. However, little or no sequence
similarity exists between the two families.
Length = 135
Score = 71.1 bits (175), Expect = 3e-15
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 215 ESYFHWAFGVYEPDFYGVIEMT--TGRSILFAPRLSEDYVVWMGQLPTLDEYKEKYQVDE 272
+S F++ G EPD V++ + G+S LF P + +W G L+E KEK+ VDE
Sbjct: 44 DSDFYYLTGFDEPDAVLVLDPSGGGGKSTLFVPPRDPEDELWDGPRLGLEEAKEKFGVDE 103
Query: 273 VYFSDEVMYSRAYLHDITAK 292
VY DE+ A L + A
Sbjct: 104 VYPIDELD---AVLPGLLAG 120
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 56.8 bits (138), Expect = 2e-09
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 15/152 (9%)
Query: 40 YSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVG------G 93
IKT E++ MR A +I+++A + V V G+ + + I + +I G G
Sbjct: 1 MMISIKTPEEIEKMREAGKIAAKALKEVASLVKPGVTTLELDEIAEEFIREKGAYPAFLG 60
Query: 94 SRHVAY-TCICASGGNGAVLHYGHASAPNDKRV-NDGDMLVFDMGSSYCGYASDITCSYP 151
+ + TCI N V H P DK+V +GD++ D+G+ GY D ++
Sbjct: 61 YKGFPFPTCISV---NEVVAHG----IPGDKKVLKEGDIVKIDVGAHIDGYIGDTAITFV 113
Query: 152 VNGKFTEKQAYIYNAVLSANRAVMEAAKPGVS 183
V E + A A A +EA KPG
Sbjct: 114 VGEVSDEDAKRLLEATKEALYAGIEAVKPGAR 145
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 51.0 bits (123), Expect = 2e-07
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I G NGA++HY + ++++++ + + D G Y +DIT + + G+ T +Q
Sbjct: 57 ISGFGPNGAIVHY-SPTEESNRKISPDGLYLIDSGGQYLDGTTDITRTVHL-GEPTAEQK 114
Query: 162 YIYNAVLSANRAVMEA 177
Y VL + A+ A
Sbjct: 115 RDYTLVLKGHIALARA 130
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 50.2 bits (121), Expect = 4e-07
Identities = 39/174 (22%), Positives = 61/174 (35%), Gaps = 42/174 (24%)
Query: 43 VIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYT-- 100
IK+ EL+ MR RI + A + + + V GM + + I + + H A
Sbjct: 9 EIKSPRELEKMRKIGRIVATALKEMGKAVEPGMTTKELDRIAEKRL-----EEHGAIPSP 63
Query: 101 --------CICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPV 152
C S N V H P + + DGD++ D+ + GY D ++ V
Sbjct: 64 EGYYGFPGSTCIS-VNEEVAH----GIPGPRVIKDGDLVNIDVSAYLDGYHGDTGITFAV 118
Query: 153 NGKFTEKQAYIYNAVLSANRAVM---EAAKPGVSWVDMHHLANKVVLSKLLDIG 203
G +E+ A A+ + K G L DIG
Sbjct: 119 -GPVSEE---AEKLCRVAEEALWAGIKQVKAG---------------RPLNDIG 153
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 44.1 bits (104), Expect = 5e-05
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 25/181 (13%)
Query: 8 ALLLIIKKDLPTSVFTILLIINYLIIYHGIIRYSRVIKTELELDVMRYASRISSEAHRSV 67
A ++K LP + F G++ + R +K+ E+ MR A+RI H+ +
Sbjct: 131 AAFASLQKHLPNARFVDAT---------GLVNWQRAVKSPTEIAYMRIAARIVENMHQRI 181
Query: 68 MRKVSAGMYEYQAEA-IFKHYILYVG--GSRHVAYTCICASGGNGAVLHYGHASAP---- 120
++ GM + A I+ I G + A + SG + ASAP
Sbjct: 182 FERIEPGMRKCDLVAEIYDAGIRGADGFGGDYPAIVPLLPSGAD--------ASAPHLTW 233
Query: 121 NDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAYIYNAVLSANRAVMEAAKP 180
+D + G+ F++ Y Y ++ + + GK T+ AVL A + AAKP
Sbjct: 234 DDSPMKKGEGTFFEIAGCYKRYHCPLSRTVFL-GKPTQAFLDAEKAVLEGMEAGLAAAKP 292
Query: 181 G 181
G
Sbjct: 293 G 293
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 42.8 bits (102), Expect = 9e-05
Identities = 35/152 (23%), Positives = 58/152 (38%), Gaps = 27/152 (17%)
Query: 43 VIKTELELDVMRYASRISSEAHRSVMRKVSAGM-------------YEYQAEAIFKHYIL 89
IKT E++ MR A R+++E + V G+ + A Y
Sbjct: 4 TIKTPEEIEKMRVAGRLAAEVLDEIEPHVKPGVTTKELDRIAEEYIRDQGAIPAPLGYHG 63
Query: 90 YVGGSRHVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCS 149
+ IC S N V H P+DK + +GD++ D+ GY D + +
Sbjct: 64 FPKS--------ICTS-VNEVVCH----GIPSDKVLKEGDIVNIDVTVIKDGYHGDTSRT 110
Query: 150 YPVNGKFTEKQAYIYNAVLSANRAVMEAAKPG 181
+ V G+ + + + A + A KPG
Sbjct: 111 FGV-GEISPEDKRLCEVTKEALYLGIAAVKPG 141
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 43.1 bits (102), Expect = 9e-05
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 27/152 (17%)
Query: 43 VIKTELELDVMRYASRISSEAHRSVMRKVSAGMY-------------EYQAEAIFKHYIL 89
+K+ E++ +R A R+++E + R+V G+ ++ A+ F Y
Sbjct: 2 SLKSPDEIEKIRKAGRLAAEVLEELEREVKPGVSTKELDRIAKDFIEKHGAKPAFLGYYG 61
Query: 90 YVGGSRHVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCS 149
+ G +C S N V+H P+ K + DGD++ D+G Y GY D +
Sbjct: 62 FPGS--------VCISV-NEVVIH----GIPDKKVLKDGDIVNIDVGVIYDGYHGDTAKT 108
Query: 150 YPVNGKFTEKQAYIYNAVLSANRAVMEAAKPG 181
+ V GK + + + + +E AKPG
Sbjct: 109 FLV-GKISPEAEKLLECTEESLYKAIEEAKPG 139
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 40.8 bits (95), Expect = 7e-04
Identities = 30/146 (20%), Positives = 63/146 (43%), Gaps = 7/146 (4%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
R+IK+ E++ +R ++ I+ S +K+ G + A FK ++ + +
Sbjct: 175 RMIKSPWEIEHLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNFSRFNL 234
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
I + G N + + GD++ FD G GY +D+ ++ V G+ +
Sbjct: 235 I-SVGDN-----FSPKIIADTTPAKVGDLIKFDCGIDVAGYGADLARTF-VLGEPDKLTQ 287
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDM 187
IY+ + + + ++ PGV +
Sbjct: 288 QIYDTIRTGHEHMLSMVAPGVKLKAV 313
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 40.5 bits (94), Expect = 8e-04
Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
RVIK+ E+ +R ++ I+ + + G + A +K ++ H +
Sbjct: 93 RVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVM-SKSETHFSRFH 151
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
+ + G + + P++ + GD++ FD G GY +DI ++ V G+ E
Sbjct: 152 LISVGAD-----FSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVV-GEPPEITR 205
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVV 195
IY + + + ++ PGV D+ +V+
Sbjct: 206 KIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVI 239
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 40.1 bits (93), Expect = 0.001
Identities = 32/154 (20%), Positives = 66/154 (42%), Gaps = 7/154 (4%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTC 101
RVIK+ E+ +R ++ I+ + + G + A +K ++ H +
Sbjct: 176 RVIKSPWEIKRLRKSAEITEYGITEASKLIRVGCTSAELTAAYKAAVM-SKSETHFSRFH 234
Query: 102 ICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQA 161
+ + G + + P++ + GD++ FD G GY +DI ++ V G+ E
Sbjct: 235 LISVGAD-----FSPKLIPSNTKACSGDLIKFDCGVDVDGYGADIARTFVV-GEPPEITR 288
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVV 195
IY + + + ++ PGV D+ +V+
Sbjct: 289 KIYQTIRTGHEHMLSMVAPGVKMKDVFDSTMEVI 322
>gnl|CDD|238519 cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and Peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 238
Score = 39.0 bits (92), Expect = 0.002
Identities = 33/143 (23%), Positives = 53/143 (37%), Gaps = 27/143 (18%)
Query: 53 MRYASRISSEAHRSVMRKVSAGM-------------YEYQAEAIFKHYILYVGGSRHVAY 99
MR A RI +E + + + G+ E+ A Y +
Sbjct: 4 MREAGRIVAEVLDELAKAIKPGVTTKELDQIAHEFIEEHGAYPAPLGYYGFPK------S 57
Query: 100 TCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEK 159
C N V H P+D+ + DGD++ D+G GY D ++ V G+ +E+
Sbjct: 58 ICTSV---NEVVCH----GIPDDRVLKDGDIVNIDVGVELDGYHGDSARTFIV-GEVSEE 109
Query: 160 QAYIYNAVLSANRAVMEAAKPGV 182
+ A +EA KPG
Sbjct: 110 AKKLVEVTEEALYKGIEAVKPGN 132
>gnl|CDD|171806 PRK12897, PRK12897, methionine aminopeptidase; Reviewed.
Length = 248
Score = 38.1 bits (88), Expect = 0.004
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 43 VIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGG-SRHVAYT- 100
IKT+ E+D+M + ++ + HR + + + G+ + + Y+ G S Y
Sbjct: 3 TIKTKNEIDLMHESGKLLASCHREIAKIMKPGITTKEINTFVEAYLEKHGATSEQKGYNG 62
Query: 101 ---CICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFT 157
ICAS N + H + P D + +GD++ DM + G SD +Y V GK +
Sbjct: 63 YPYAICAS-VNDEMCH----AFPADVPLTEGDIVTIDMVVNLNGGLSDSAWTYRV-GKVS 116
Query: 158 EK 159
++
Sbjct: 117 DE 118
>gnl|CDD|238524 cd01091, CDC68-like, Related to aminopeptidase P and aminopeptidase
M, a member of this domain family is present in cell
division control protein 68, a transcription factor.
Length = 243
Score = 35.8 bits (83), Expect = 0.017
Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 20/147 (13%)
Query: 50 LDVMRYASRISSEAHRSVM-----------RKVSAGMYEYQAEAIFKHYILYVGGSR--- 95
L+ ++ AS + + + +KV+ + E + Y
Sbjct: 1 LNNIKKASDATVDVLKKFFVDEVEEIIDQEKKVTHSKLSDKVEKAIEDKKKYKAKLDPEQ 60
Query: 96 -HVAYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNG 154
Y I SGGN +S+ + + G ++ +G+ Y Y S+I ++ ++
Sbjct: 61 LDWCYPPIIQSGGN--YDLLKSSSSSDKLLYHFGVIIC-SLGARYKSYCSNIARTFLIDP 117
Query: 155 KFTEKQAYIYNAVLSANRAVMEAAKPG 181
T +Q YN +L+ +++ KPG
Sbjct: 118 --TSEQQKNYNFLLALQEEILKELKPG 142
>gnl|CDD|181534 PRK08671, PRK08671, methionine aminopeptidase; Provisional.
Length = 291
Score = 35.5 bits (83), Expect = 0.024
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 113 HYGHASAPNDKRV-NDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAYIYNAVLSAN 171
HY +P D+RV +GD++ D+G+ GY +D + + GK+ + + A A
Sbjct: 61 HY--TPSPGDERVFPEGDVVKLDLGAHVDGYIADTAVTVDLGGKYED----LVEASEEAL 114
Query: 172 RAVMEAAKPGVS 183
A +E +PGVS
Sbjct: 115 EAAIEVVRPGVS 126
>gnl|CDD|238521 cd01088, MetAP2, Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also
known as methionyl aminopeptidase and peptidase M.
Catalyzes release of N-terminal amino acids,
preferentially methionine, from peptides and arylamides.
Length = 291
Score = 33.8 bits (78), Expect = 0.095
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 113 HYGHASAPNDKRV-NDGDMLVFDMGSSYCGYASD--ITCSYPVNGKFTEKQAYIYNAVLS 169
HY D V +GD++ D G+ GY +D T + K+ + A
Sbjct: 60 HY--TPNAGDDTVLKEGDVVKLDFGAHVDGYIADSAFTVD--FDPKYDDLLE----AAKE 111
Query: 170 ANRAVMEAAKPGVS 183
A A ++ A P V
Sbjct: 112 ALNAAIKEAGPDVR 125
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 32.8 bits (75), Expect = 0.19
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 108 NGAVLHYGHASAPNDKRV-NDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAYIYNA 166
N H+ DK V DGD++ D+G+ GY +D + + ++ + A
Sbjct: 59 NECAAHF--TPKAGDKTVFKDGDVVKLDLGAHVDGYIADTAITVDLGDQYDN----LVKA 112
Query: 167 VLSANRAVMEAAKPGVSWVDM 187
A ++ + GV ++
Sbjct: 113 AKDALYTAIKEIRAGVRVGEI 133
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 31.7 bits (72), Expect = 0.47
Identities = 34/161 (21%), Positives = 63/161 (39%), Gaps = 33/161 (20%)
Query: 39 RYSRVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVA 98
+Y +IKT +++ +R A ++++ ++ G+ + + + + H
Sbjct: 38 QYDIIIKTPEQIEKIRKACQVTARILDALCEAAKEGVTTNELDELSREL--------HKE 89
Query: 99 YTCICASGGNGAVLHYGHA----------------SAPNDKRVNDGDMLVFDMGSSYCGY 142
Y I A L+YG PND + +GD++ D+ GY
Sbjct: 90 YNAIPAP------LNYGSPPFPKTICTSLNEVICHGIPNDIPLKNGDIMNIDVSCIVDGY 143
Query: 143 ASDITCSYPVN-GKFTEKQAYIYNAVLSANRAVMEAAKPGV 182
D CS V G+ +E + + A L A + KPG+
Sbjct: 144 YGD--CSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPGI 182
>gnl|CDD|165214 PHA02887, PHA02887, EGF-like protein; Provisional.
Length = 126
Score = 29.5 bits (66), Expect = 1.0
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 6 LIALLLIIKKDLPTSVFTILLIINYLIIYHGI-IRYSRVIKTELELDVMRYASRISSEAH 64
LI LL K L TS+ +LLI N I ++GI I +IK E + + E
Sbjct: 16 LIKNLLGKKFTLATSIIIVLLIFN--IAFYGIRIHELAIIKRNFESHI---SKFNYKENA 70
Query: 65 RSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVA----YTCICASGGNG 109
+ K M+ + + F + + G ++ CIC G G
Sbjct: 71 NAQNFKRKNSMFFEKCKNDFNDFCIN-GECMNIIDLDEKFCICNKGYTG 118
>gnl|CDD|176887 cd08878, RHO_alpha_C_DMO-like, C-terminal catalytic domain of the
oxygenase alpha subunit of dicamba O-demethylase and
related aromatic ring hydroxylating dioxygenases.
C-terminal catalytic domain of the oxygenase alpha
subunit of Stenotrophomonas maltophilia dicamba
O-demethylase (DMO) and related Rieske-type non-heme
iron aromatic ring-hydroxylating oxygenases (RHOs, also
known as aromatic ring hydroxylating dioxygenases). RHOs
utilize non-heme Fe(II) to catalyze the addition of
hydroxyl groups to the aromatic ring, an initial step in
the oxidative degradation of aromatic compounds. RHOs
are composed of either two or three protein components,
and are comprised of an electron transport chain (ETC)
and an oxygenase. The ETC transfers reducing equivalents
from the electron donor to the oxygenase component,
which in turn transfers electrons to the oxygen
molecules. The oxygenase components are oligomers,
either (alpha)n or (alpha)n(beta)n. The alpha subunits
are the catalytic components and have an N-terminal
domain, which binds a Rieske-like 2Fe-2S cluster, and
the C-terminal catalytic domain which binds the non-heme
Fe(II). The Fe(II) is co-ordinated by conserved His and
Asp residues. Oxygenases belonging to this subgroup
include the alpha subunits of carbazole
1,9a-dioxygenase, phthalate dioxygenase, vanillate
O-demethylase, Pseudomonas putida 2-oxoquinoline
8-monooxygenase, and Comamonas testosteroni T-2
p-toluenesulfonate dioxygenase. It also includes the
C-terminal domain of the lignin biphenyl-specific
O-demethylase (LigX) of the 5,5'-dehydrodivanillic acid
O- demethylation system of Sphingomonas paucimobilis
SYK-6. This subfamily belongs to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket.
Length = 196
Score = 28.9 bits (65), Expect = 2.4
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 12/81 (14%)
Query: 209 IDELMEESYFHWAFG-VYEPD--FYGVIEMTTGRSILFAPRLSEDYVVWMGQLPTLDEYK 265
IDE +++ W F + PD E+T + +ED Q +D
Sbjct: 116 IDE--TTTHYFWFFVRNFAPDEEKKDDEELTETLRSGLSGAFNEDKEAVEAQQRIIDRDP 173
Query: 266 EKYQVDEVYF-SDE--VMYSR 283
+ E SD+ V + R
Sbjct: 174 TR----EHLGLSDKGIVRFRR 190
>gnl|CDD|211998 TIGR04275, beta_prop_Msarc, beta propeller repeat, Methanosarcina
surface protein type. This model describes a repeat
region found mostly in cell surface proteins of various
methanogens. Methanosarcina barkeri, for example, has
twenty such proteins, often with either seven or
fourteen repeats. These repeats resemble the beta
propeller repeats of the TolB periplasmic protein of
Gram-negative bacteria, part of a complex associated
with various functions including biopolymer transport
(see TIGR02800).
Length = 40
Score = 25.9 bits (58), Expect = 3.4
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 233 IEMTTGRSILFAPRLSEDYVVWM 255
++TT S P + D VVW
Sbjct: 2 TQITTDGSDQINPAIYGDRVVWQ 24
>gnl|CDD|129586 TIGR00495, crvDNA_42K, 42K curved DNA binding protein. Proteins
identified by This model have been identified in a
number of species as a nuclear (but not nucleolar)
protein with a cell cycle dependence. Various names
given to members of this family have included cell cycle
protein p38-2G4, DNA-binding protein GBP16, and
proliferation-associated protein 1. This protein is
closely related to methionine aminopeptidase, a
cobolt-binding protein [Unknown function, General].
Length = 389
Score = 29.1 bits (65), Expect = 3.5
Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 17/153 (11%)
Query: 56 ASRISSEAHRSVMRKVSAGMY---------EYQAEAIFKHYILYVGGSRHVAY-TCICAS 105
A I++ +SV+ S G + E K + + +A+ TCI
Sbjct: 25 AGEIANNVLKSVVEACSPGAKVVDICEKGDAFIMEETAKIFKKEKEMEKGIAFPTCISV- 83
Query: 106 GGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVN----GKFTEKQA 161
N V H+ + D + +GD++ D+G G+ + + ++ V T ++A
Sbjct: 84 --NNCVGHFSPLKSDQDYILKEGDVVKIDLGCHIDGFIALVAHTFVVGVAQEEPVTGRKA 141
Query: 162 YIYNAVLSANRAVMEAAKPGVSWVDMHHLANKV 194
+ A A A + KPG + + NKV
Sbjct: 142 DVIAAAHLAAEAALRLVKPGNTNTQVTEAINKV 174
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 28.8 bits (64), Expect = 4.9
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 118 SAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAYIYNAVLSANRAVMEA 177
SA + GD+++ +G Y GY S+++ + + +Q Y + + ++
Sbjct: 260 SAFSFPMELTGDVVLLSIGIRYNGYCSNMSRTILTDP--DSEQQKNYEFLYMLQKYILGL 317
Query: 178 AKPGVSWVDMHHLANKVVLSKLLDIG 203
+PG ++ A K + S ++G
Sbjct: 318 VRPGTDSGIIYSEAEKYISSNGPELG 343
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional.
Length = 396
Score = 28.3 bits (63), Expect = 7.3
Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 11/155 (7%)
Query: 44 IKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGG-----SRHVA 98
IKT ++ MR RI+ E + R + G+ + + + + GG + H
Sbjct: 137 IKTPEQIQRMRETCRIAREVLDAAARAIKPGVTTDEIDRVVHEATIAAGGYPSPLNYHFF 196
Query: 99 YTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTE 158
C S N + H P+ +++ DGD++ D+ Y G D+ ++ V G E
Sbjct: 197 PKSCCTSV-NEVICH----GIPDARKLEDGDIVNVDVTVYYKGCHGDLNETFFV-GNVDE 250
Query: 159 KQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANK 193
+ + KPGV + ++ + N+
Sbjct: 251 ASRQLVKCTYECLEKAIAIVKPGVRYREVGEVINR 285
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.420
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,557,176
Number of extensions: 1717367
Number of successful extensions: 1931
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1894
Number of HSP's successfully gapped: 41
Length of query: 332
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 235
Effective length of database: 6,635,264
Effective search space: 1559287040
Effective search space used: 1559287040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (26.4 bits)