RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16136
(332 letters)
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 93.0 bits (230), Expect = 1e-22
Identities = 41/205 (20%), Positives = 74/205 (36%), Gaps = 17/205 (8%)
Query: 44 IKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSR-----HVA 98
IKT +++ MR A R+++E + V G+ + + I YI+ + +
Sbjct: 3 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 62
Query: 99 YTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTE 158
Y N V H + K + DGD++ D+ G+ D T + GK T
Sbjct: 63 YPKSVCISINEVVCHGIPD---DAKLLKDGDIVNIDVTVIKDGFHGD-TSKMFIVGKPTI 118
Query: 159 KQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDI-------GLLRGTIDE 211
+ + + KPG++ ++ K V ++ + G+ RG +E
Sbjct: 119 MGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEE 178
Query: 212 LME-ESYFHWAFGVYEPDFYGVIEM 235
V +P IE
Sbjct: 179 PQVLHYDSRETNVVLKPGMTFTIEP 203
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 84.3 bits (207), Expect = 2e-19
Identities = 65/191 (34%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Query: 49 ELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTCICASGGN 108
E+ V+R A I++ AH M K GM+EY E H G+R+ +Y I SG N
Sbjct: 4 EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR-HGARYPSYNTIVGSGEN 62
Query: 109 GAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAYIYNAVL 168
G +LHY N+ + DGD+++ D G Y GYA DIT ++PVNGKFT+ Q IY+ VL
Sbjct: 63 GCILHYTE----NECEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQREIYDIVL 118
Query: 169 SANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEESYFHWAFGVYEPD 228
+ + +PG S +++ ++++S L+ +G+L+G +DEL+ ++ F
Sbjct: 119 ESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSH 178
Query: 229 FYGVIEMTTGR 239
+ G+ G
Sbjct: 179 WLGLDVHDVGV 189
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 78.3 bits (191), Expect = 2e-17
Identities = 24/147 (16%), Positives = 53/147 (36%)
Query: 43 VIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTCI 102
++KTE EL ++ I ++ ++ G+ + + I K G +
Sbjct: 2 IVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDEN 61
Query: 103 CASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAY 162
+V P+ + + +GD++ D+ + GY +D S+ V +
Sbjct: 62 FPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQK 121
Query: 163 IYNAVLSANRAVMEAAKPGVSWVDMHH 189
+ + A + KPG ++
Sbjct: 122 VCDVATMAFENAIAKVKPGTKLSNIGK 148
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 76.6 bits (187), Expect = 7e-17
Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 8/156 (5%)
Query: 42 RVIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYIL----YVGGSRHV 97
IKT E++ M+ A + + A R V + + G + E + +
Sbjct: 2 IRIKTPSEIEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYG 61
Query: 98 AYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFT 157
Y N V+H +K +GD++ D+G+ Y G D +Y V G+
Sbjct: 62 GYKYATCVSVNEEVVHGLP---LKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIV-GETD 117
Query: 158 EKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANK 193
E+ + ++ KPG+ D+ H +
Sbjct: 118 ERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQE 153
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 73.9 bits (180), Expect = 5e-16
Identities = 52/214 (24%), Positives = 92/214 (42%), Gaps = 11/214 (5%)
Query: 45 KTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTCICA 104
KT+ E++++ A I+ +A + + +++ G E + A ++ + G + T I +
Sbjct: 1 KTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGAEKPAFDTIIAS 60
Query: 105 SGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAYIY 164
+DKR+ GD++V D+G+ Y Y SDIT + V G EKQ IY
Sbjct: 61 GHR-----SALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVV-GSPNEKQREIY 114
Query: 165 NAVLSANRAVMEAAKPGVSWVDMHHLANKV----VLSKLLDIGLLRGTIDELMEESYFHW 220
VL A + +EAAKPG++ ++ +A ++ L G E+ E
Sbjct: 115 EIVLEAQKRAVEAAKPGMTAKELDSIAREIIKEYGYGDYFIHSLGHGVGLEIHEWPRISQ 174
Query: 221 -AFGVYEPDFYGVIEMTTGRSILFAPRLSEDYVV 253
V + IE L R+ + ++
Sbjct: 175 YDETVLKEGMVITIEPGIYIPKLGGVRIEDTVLI 208
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 69.3 bits (168), Expect = 3e-14
Identities = 31/201 (15%), Positives = 71/201 (35%), Gaps = 10/201 (4%)
Query: 43 VIKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRH-----V 97
+IK+ E ++R+ +RI+ +V+ + + EY+ ++ +
Sbjct: 1 MIKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELM 60
Query: 98 AYTCICASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFT 157
SG N H ++VN GD+L + GY + + + ++ +
Sbjct: 61 DTWTWFQSGINTDGAHNPV----TTRKVNKGDILSLNCFPMIAGYYTALERTLFLD-HCS 115
Query: 158 EKQAYIYNAVLSANRAVMEAAKPGVSWVDMHHLANKVVLSKLLDIGLLRGTIDELMEESY 217
+ ++ + + A ++ KPG D+ N++ L + G S+
Sbjct: 116 DDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSH 175
Query: 218 FHWAFGVYEPDFYGVIEMTTG 238
++ E + G
Sbjct: 176 YYGREAGLELREDIDTVLEPG 196
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 57.4 bits (137), Expect = 3e-10
Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 9/148 (6%)
Query: 48 LELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHVAYTCICASGG 107
++ + + A I+ + ++ GM + + I+ +
Sbjct: 1 MDTEKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIM-----ELGGKPAFPVNLS 55
Query: 108 NGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAYIYNAV 167
+ + + + +GD L D+G G+ +D + V + E
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEAAKE-- 113
Query: 168 LSANRAVMEAAKPGVSWVDMHHLANKVV 195
A A + A+ GV ++ +
Sbjct: 114 --ALNAAISVARAGVEIKELGKAIENEI 139
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 50.3 bits (119), Expect = 1e-07
Identities = 23/152 (15%), Positives = 45/152 (29%), Gaps = 5/152 (3%)
Query: 44 IKTELELDVMRYASRISSEAHRSVMRKVSAGMYEYQAEAIFKHYILYVGGSRHV-AYTCI 102
+E + R A+ + + VM + GM + + + + A
Sbjct: 51 QASEEIWNDFREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNAGLAF 110
Query: 103 CASGGNGAVLHYGHASAPNDKRVNDGDMLVFDMGSSYCGYASDITCSYPVNGKFTEKQAY 162
+ +A + + D+ D G+ G D + F K
Sbjct: 111 PTGCSLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVT----FNPKYDT 166
Query: 163 IYNAVLSANRAVMEAAKPGVSWVDMHHLANKV 194
+ AV A ++ A V D+ +V
Sbjct: 167 LLKAVKDATNTGIKCAGIDVRLCDVGEAIQEV 198
>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli
[TaxId: 562]}
Length = 176
Score = 39.1 bits (90), Expect = 2e-04
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 215 ESYFHWAFGVYEPDFYGVIEMTTG---RSILFAPRLSEDYVVWMGQLPTLDEYKEKYQVD 271
S F + G EP+ V+ + S+LF +W G+ D EK VD
Sbjct: 46 NSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVD 105
Query: 272 EVYFSDEVM 280
E+
Sbjct: 106 RALAFSEIN 114
>d2grrb1 a.118.12.1 (B:431-587) Ran-GTPase activating protein 1
(RanGAP1), C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 157
Score = 27.1 bits (60), Expect = 2.0
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 12 IIKKDLPTSVFTILLIINYLIIYHGIIRYSRVIKTELELDVMRYASR 58
+++K +S F + L+++ G+++ +K L A
Sbjct: 67 LMQKAFNSSSFNSNTFLTRLLVHMGLLKSEDKVKAIANLYGPLMALN 113
>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId:
9913]}
Length = 230
Score = 25.6 bits (56), Expect = 8.5
Identities = 13/74 (17%), Positives = 31/74 (41%)
Query: 13 IKKDLPTSVFTILLIINYLIIYHGIIRYSRVIKTELELDVMRYASRISSEAHRSVMRKVS 72
I+ +L +L ++ +I + S+V +++ D RY + +++ + + S
Sbjct: 86 IETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQS 145
Query: 73 AGMYEYQAEAIFKH 86
Y+ E K
Sbjct: 146 QQAYQEAFEISKKE 159
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.420
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,296,874
Number of extensions: 60729
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 12
Length of query: 332
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 246
Effective length of database: 1,226,816
Effective search space: 301796736
Effective search space used: 301796736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)