BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16137
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 183/276 (66%), Gaps = 18/276 (6%)
Query: 167 VQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSA 226
V R WAR I H D+A LNFF +++ YPLPK D + +PDF+A
Sbjct: 234 VLIRIWARPSAIAAGH------GDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNA 287
Query: 227 GAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNE 286
GAMENWGL+TYRE++LLFD + SS N+ + IAHELAHQWFGNLVT++WW DLWLNE
Sbjct: 288 GAMENWGLVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNE 347
Query: 287 GFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVP---IGNP 343
GFA+Y+ + L Y P +W L D L++V + +D+L+SSHP+S P I P
Sbjct: 348 GFASYV--EYLGADYAEP----TWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTP 401
Query: 344 SEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEA- 402
++I+++FDAISY KG+ ++RM++SFLS VF+QG+++YL+ + Y+N +LW+ L EA
Sbjct: 402 AQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAV 461
Query: 403 GHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYG 438
+RS LP TV++IM+ WTLQ G+P++ V G
Sbjct: 462 NNRSIQLPT--TVRDIMNRWTLQMGFPVITVDTSTG 495
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 254 bits (648), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 129/277 (46%), Positives = 183/277 (66%), Gaps = 19/277 (6%)
Query: 167 VQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSA 226
V R WAR + I + H ++ V GP LNFF ++N YPLPK D +A+PDF+A
Sbjct: 275 VLIRIWARPNAIAEGHGMYALNV-----TGP-ILNFFANHYNTSYPLPKSDQIALPDFNA 328
Query: 227 GAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNE 286
GAMENWGL+TYRE+ALLFD SSI N+ + IAHELAHQWFGNLVT+ WW DLWLNE
Sbjct: 329 GAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNE 388
Query: 287 GFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVP---IGNP 343
GFA+Y+ + L + P +W L D +V + +D+L+SSHP++ P + P
Sbjct: 389 GFASYV--EYLGADHAEP----TWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTP 442
Query: 344 SEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEA- 402
++I+++FD+ISY KG+ +IRM+++FL+ +F++G+++YL+ + Y+N DLWE L +A
Sbjct: 443 AQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAV 502
Query: 403 -GHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYG 438
S LP TV+ IMD WTLQ G+P++ V + G
Sbjct: 503 DAQTSIRLPD--TVRAIMDRWTLQMGFPVITVDTKTG 537
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 254 bits (648), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 129/277 (46%), Positives = 183/277 (66%), Gaps = 19/277 (6%)
Query: 167 VQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSA 226
V R WAR + I + H ++ V GP LNFF ++N YPLPK D +A+PDF+A
Sbjct: 232 VLIRIWARPNAIAEGHGMYALNV-----TGP-ILNFFANHYNTSYPLPKSDQIALPDFNA 285
Query: 227 GAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNE 286
GAMENWGL+TYRE+ALLFD SSI N+ + IAHELAHQWFGNLVT+ WW DLWLNE
Sbjct: 286 GAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNE 345
Query: 287 GFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVP---IGNP 343
GFA+Y+ + L + P +W L D +V + +D+L+SSHP++ P + P
Sbjct: 346 GFASYV--EYLGADHAEP----TWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTP 399
Query: 344 SEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEA- 402
++I+++FD+ISY KG+ +IRM+++FL+ +F++G+++YL+ + Y+N DLWE L +A
Sbjct: 400 AQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAV 459
Query: 403 -GHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYG 438
S LP TV+ IMD WTLQ G+P++ V + G
Sbjct: 460 DAQTSIRLPD--TVRAIMDRWTLQMGFPVITVDTKTG 494
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 254 bits (648), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 129/277 (46%), Positives = 183/277 (66%), Gaps = 19/277 (6%)
Query: 167 VQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSA 226
V R WAR + I + H ++ V GP LNFF ++N YPLPK D +A+PDF+A
Sbjct: 231 VLIRIWARPNAIAEGHGMYALNV-----TGP-ILNFFANHYNTSYPLPKSDQIALPDFNA 284
Query: 227 GAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNE 286
GAMENWGL+TYRE+ALLFD SSI N+ + IAHELAHQWFGNLVT+ WW DLWLNE
Sbjct: 285 GAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNE 344
Query: 287 GFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVP---IGNP 343
GFA+Y+ + L + P +W L D +V + +D+L+SSHP++ P + P
Sbjct: 345 GFASYV--EYLGADHAEP----TWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTP 398
Query: 344 SEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEA- 402
++I+++FD+ISY KG+ +IRM+++FL+ +F++G+++YL+ + Y+N DLWE L +A
Sbjct: 399 AQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAV 458
Query: 403 -GHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYG 438
S LP TV+ IMD WTLQ G+P++ V + G
Sbjct: 459 DAQTSIRLPD--TVRAIMDRWTLQMGFPVITVDTKTG 493
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 128/277 (46%), Positives = 183/277 (66%), Gaps = 19/277 (6%)
Query: 167 VQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSA 226
V R WAR + I + H ++ V GP LNFF ++N YPLPK D +A+PDF+A
Sbjct: 231 VLIRIWARPNAIAEGHGMYALNV-----TGP-ILNFFANHYNTSYPLPKSDQIALPDFNA 284
Query: 227 GAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNE 286
GAMENWGL+TYRE+ALLFD SSI N+ + IAH+LAHQWFGNLVT+ WW DLWLNE
Sbjct: 285 GAMENWGLVTYRENALLFDPQSSSISNKERVVTVIAHQLAHQWFGNLVTLAWWNDLWLNE 344
Query: 287 GFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVP---IGNP 343
GFA+Y+ + L + P +W L D +V + +D+L+SSHP++ P + P
Sbjct: 345 GFASYV--EYLGADHAEP----TWNLKDLIVPGDVYRVMAVDALASSHPLTTPAEEVNTP 398
Query: 344 SEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEA- 402
++I+++FD+ISY KG+ +IRM+++FL+ +F++G+++YL+ + Y+N DLWE L +A
Sbjct: 399 AQISEMFDSISYSKGASVIRMLSNFLTEDLFKEGLASYLHAFAYQNTTYLDLWEHLQKAV 458
Query: 403 -GHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYG 438
S LP TV+ IMD WTLQ G+P++ V + G
Sbjct: 459 DAQTSIRLPD--TVRAIMDRWTLQMGFPVITVDTKTG 493
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 241 bits (615), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 117/269 (43%), Positives = 166/269 (61%), Gaps = 30/269 (11%)
Query: 187 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDD 246
+Q D+A +A L F+E YF+I YPLPKQD+ AIPDF +GAMENWGL TYRESALLFD
Sbjct: 232 NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDA 291
Query: 247 VRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYN--RP 304
+SS ++ I T+AHELAHQWFGNLVTM+WW DLWLNEGFA +M +++ + +
Sbjct: 292 EKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKV 351
Query: 305 GSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRM 364
G K D +D+L+SSHPVS P+ NP++I ++FD +SY KG+ ++ M
Sbjct: 352 GDYFFGKCFDA---------MEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNM 402
Query: 365 MNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRSKV---------------- 408
+ +LS F+ G+ YL K+ Y+N + +DLW+S+ V
Sbjct: 403 LREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSS 462
Query: 409 ---LPQNLTVKEIMDSWTLQTGYPIVDVT 434
+ + VK +M++WTLQ G+P++ +T
Sbjct: 463 SHWHQEGVDVKTMMNTWTLQKGFPLITIT 491
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 42 LQTGYPIVDVTREYGKGGKIVRFSQRRFLALPNLKKEDSSQCWWIPITLMTSKS 95
LQ G+P++ +T G+ V Q ++ + D+ W +P+T +TSKS
Sbjct: 481 LQKGFPLITITVR----GRNVHMKQEHYMKGSD-GAPDTGYLWHVPLTFITSKS 529
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 241 bits (615), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 117/269 (43%), Positives = 166/269 (61%), Gaps = 30/269 (11%)
Query: 187 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDD 246
+Q D+A +A L F+E YF+I YPLPKQD+ AIPDF +GAMENWGL TYRESALLFD
Sbjct: 283 NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDA 342
Query: 247 VRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYN--RP 304
+SS ++ I T+AHELAHQWFGNLVTM+WW DLWLNEGFA +M +++ + +
Sbjct: 343 EKSSASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKV 402
Query: 305 GSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRM 364
G K D +D+L+SSHPVS P+ NP++I ++FD +SY KG+ ++ M
Sbjct: 403 GDYFFGKCFDA---------MEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNM 453
Query: 365 MNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRSKV---------------- 408
+ +LS F+ G+ YL K+ Y+N + +DLW+S+ V
Sbjct: 454 LREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSS 513
Query: 409 ---LPQNLTVKEIMDSWTLQTGYPIVDVT 434
+ + VK +M++WTLQ G+P++ +T
Sbjct: 514 SHWHQEGVDVKTMMNTWTLQKGFPLITIT 542
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 42 LQTGYPIVDVTREYGKGGKIVRFSQRRFLALPNLKKEDSSQCWWIPITLMTSKS 95
LQ G+P++ +T G+ V Q ++ + D+ W +P+T +TSKS
Sbjct: 532 LQKGFPLITITVR----GRNVHMKQEHYMKGSD-GAPDTGYLWHVPLTFITSKS 580
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 241 bits (614), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 117/269 (43%), Positives = 166/269 (61%), Gaps = 30/269 (11%)
Query: 187 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDD 246
+Q D+A +A L F+E YF+I YPLPKQD+ AIPDF +GAMENWGL TYRESALLFD
Sbjct: 241 NQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIPDFQSGAMENWGLTTYRESALLFDA 300
Query: 247 VRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYN--RP 304
+SS ++ I T+AHELAHQWFGNLVTM+WW DLWLNEGFA +M +++ + +
Sbjct: 301 EKSSASSKLDITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVTHPELKV 360
Query: 305 GSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRM 364
G K D +D+L+SSHPVS P+ NP++I ++FD +SY KG+ ++ M
Sbjct: 361 GDYFFGKCFDA---------MEVDALNSSHPVSTPVENPAQIREMFDDVSYDKGACILNM 411
Query: 365 MNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRSKV---------------- 408
+ +LS F+ G+ YL K+ Y+N + +DLW+S+ V
Sbjct: 412 LREYLSADAFKSGIVQYLQKHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSS 471
Query: 409 ---LPQNLTVKEIMDSWTLQTGYPIVDVT 434
+ + VK +M++WTLQ G+P++ +T
Sbjct: 472 SHWHQERVDVKTMMNTWTLQRGFPLITIT 500
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 42 LQTGYPIVDVTREYGKGGKIVRFSQRRFLALPNLKKEDSSQCWWIPITLMTSKS 95
LQ G+P++ +T G+ V Q ++ + D+ W +P+T +TSKS
Sbjct: 490 LQRGFPLITITVR----GRNVHMKQEHYMKGSD-GAPDTGYLWHVPLTFITSKS 538
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 166/269 (61%), Gaps = 26/269 (9%)
Query: 187 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDD 246
+Q +A +A + L+F+E+YF+I YPL K D++AIPDF+ GAMENWGLITYRE++LLFD
Sbjct: 294 NQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDP 353
Query: 247 VRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGS 306
SS ++ + IAHELAHQWFGNLVTM+WW D+WLNEGFA YM A+N Y
Sbjct: 354 KTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQ- 412
Query: 307 KHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMN 366
D L+ + DSL+SS P+S P P++I ++FD +SY KG+ ++ M+
Sbjct: 413 ------FDDYFLNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLK 466
Query: 367 SFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRS-------------------K 407
FL + FQ+G+ YL K+ YRNA+ DDLW SL+ + S
Sbjct: 467 DFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLA 526
Query: 408 VLPQNLTVKEIMDSWTLQTGYPIVDVTRE 436
L +N VKE+M +WTLQ G P++ V ++
Sbjct: 527 FLGENAEVKEMMTTWTLQKGIPLLVVKQD 555
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 238 bits (607), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 167/269 (62%), Gaps = 26/269 (9%)
Query: 187 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDD 246
+Q +A +A + L+F+E+YF+I YPL K D++AIPDF+ GAMENWGLITYRE++LLFD
Sbjct: 294 NQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDP 353
Query: 247 VRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGS 306
SS ++ + IAHELAHQWFGNLVTM+WW D+WL EGFA YM A+N Y P
Sbjct: 354 KTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYMELIAVNATY--PEL 411
Query: 307 KHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMN 366
+ D L+ + DSL+SS P+S P P++I ++FD +SY KG+ ++ M+
Sbjct: 412 Q-----FDDYFLNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLK 466
Query: 367 SFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRS-------------------K 407
FL + FQ+G+ YL K+ YRNA+ DDLW SL+ + S
Sbjct: 467 DFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLA 526
Query: 408 VLPQNLTVKEIMDSWTLQTGYPIVDVTRE 436
L +N VKE+M +WTLQ G P++ V ++
Sbjct: 527 FLGENAEVKEMMTTWTLQKGIPLLVVKQD 555
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 147/238 (61%), Gaps = 19/238 (7%)
Query: 200 LNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDV--RSSIHNEYSI 257
+ F+E YF I Y LPK ++++P+F AGAMENWG IT+RE ++ D+ S++ + +
Sbjct: 203 VEFYENYFGIPYALPKMHLISVPEFGAGAMENWGAITFRE---IYMDIAENSAVTVKRNS 259
Query: 258 ANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEA 317
AN IAHE+AHQWFG+LVTMKWW DLWLNE FAT+M+ + ++ + W
Sbjct: 260 ANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLF------PEWSFWGDFF 313
Query: 318 LSNVLLIFPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQG 377
+S DSL ++HP+ V + +P EI+QIFD ISY KG+ ++RM+ + + F++G
Sbjct: 314 VSRTSGALRSDSLKNTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKG 373
Query: 378 VSNYLNKYQYRNAEQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTR 435
+S YLN +++ NAE DLW ++ + + VK +M+ W GYP++ + R
Sbjct: 374 ISKYLNDHKFGNAEGSDLWTAIEDVSGKP--------VKRVMEYWIKNPGYPVIKLKR 423
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 146/238 (61%), Gaps = 19/238 (7%)
Query: 200 LNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDV--RSSIHNEYSI 257
+ F+E YF I Y LPK ++++P+F AGAMENWG IT+RE ++ D+ S++ + +
Sbjct: 203 VEFYENYFGIPYALPKMHLISVPEFGAGAMENWGAITFRE---IYMDIAENSAVTVKRNS 259
Query: 258 ANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEA 317
A IAHE+AHQWFG+LVTMKWW DLWLNE FAT+M+ + ++ + W
Sbjct: 260 ATVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTLF------PEWSFWGDFF 313
Query: 318 LSNVLLIFPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQG 377
+S DSL ++HP+ V + +P EI+QIFD ISY KG+ ++RM+ + + F++G
Sbjct: 314 VSRTSGALRSDSLKNTHPIEVDVRDPDEISQIFDEISYGKGASILRMIEDYAGYEEFRKG 373
Query: 378 VSNYLNKYQYRNAEQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTR 435
+S YLN +++ NAE DLW ++ + + VK +M+ W GYP++ + R
Sbjct: 374 ISKYLNDHKFGNAEGSDLWTAIEDVSGKP--------VKRVMEYWIKNPGYPVIKLKR 423
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 123/259 (47%), Gaps = 16/259 (6%)
Query: 187 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDD 246
S++ +A E + + F E YF + Y L + ++VA+ DF+ GAMEN GL + ++LL
Sbjct: 225 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 284
Query: 247 VRSSIHNEYS-IANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPG 305
++SI Y+ I + HE HQ+ GN VT++ W L L EG + R N
Sbjct: 285 -KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVH--------RENLFS 335
Query: 306 SKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPS--EIAQIFDAISYKKGSFLIR 363
+ + + LS+V L+ + L S P+S PI S +A + Y KGS ++R
Sbjct: 336 EEMTKTV--TTRLSHVDLLRSVQFLEDSSPLSHPIRPESYVSMANFYTTTVYDKGSEVMR 393
Query: 364 MMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWT 423
M + L + +++G Y+ K A +D ++ E ++ K + + + + W
Sbjct: 394 MYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAM-EQAYKMKKADNSANLNQYL-LWF 451
Query: 424 LQTGYPIVDVTREYGKGGK 442
Q+G P V Y K
Sbjct: 452 SQSGTPHVSFKYNYDAEKK 470
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 123/259 (47%), Gaps = 16/259 (6%)
Query: 187 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDD 246
S++ +A E + + F E YF + Y L + ++VA+ DF+ GAMEN GL + ++LL
Sbjct: 226 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 285
Query: 247 VRSSIHNEYS-IANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPG 305
++SI Y+ I + HE HQ+ GN VT++ W L L EG + R N
Sbjct: 286 -KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVH--------RENLFS 336
Query: 306 SKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSEIA--QIFDAISYKKGSFLIR 363
+ + + LS+V L+ + L S P+S PI S ++ + Y KGS ++R
Sbjct: 337 EEMTKTV--TTRLSHVDLLRSVQFLEDSSPLSHPIRPESYVSMENFYTTTVYDKGSEVMR 394
Query: 364 MMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWT 423
M + L + +++G Y+ K A +D ++ E ++ K + + + + W
Sbjct: 395 MYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAM-EQAYKMKKADNSANLNQYL-LWF 452
Query: 424 LQTGYPIVDVTREYGKGGK 442
Q+G P V Y K
Sbjct: 453 SQSGTPHVSFKYNYDAEKK 471
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 123/259 (47%), Gaps = 16/259 (6%)
Query: 187 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDD 246
S++ +A E + + F E YF + Y L + ++VA+ DF+ GAMEN GL + ++LL
Sbjct: 225 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 284
Query: 247 VRSSIHNEYS-IANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPG 305
++SI Y+ I + HE HQ+ GN VT++ W L L EG + R N
Sbjct: 285 -KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVH--------RENLFS 335
Query: 306 SKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSEIA--QIFDAISYKKGSFLIR 363
+ + + LS+V L+ + L S P+S PI S ++ + Y KGS ++R
Sbjct: 336 EEMTKTV--TTRLSHVDLLRSVQFLEDSSPLSHPIRPESYVSMENFYTTTVYDKGSEVMR 393
Query: 364 MMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWT 423
M + L + +++G Y+ K A +D ++ E ++ K + + + + W
Sbjct: 394 MYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAM-EQAYKMKKADNSANLNQYL-LWF 451
Query: 424 LQTGYPIVDVTREYGKGGK 442
Q+G P V Y K
Sbjct: 452 SQSGTPHVSFKYNYDAEKK 470
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 123/259 (47%), Gaps = 16/259 (6%)
Query: 187 SQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDD 246
S++ +A E + + F E YF + Y L + ++VA+ DF+ GAMEN GL + ++LL
Sbjct: 226 SKLQWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFNVGAMENKGLNIFNANSLLASK 285
Query: 247 VRSSIHNEYS-IANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPG 305
++SI Y+ I + HE HQ+ GN VT++ W L L EG + R N
Sbjct: 286 -KNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVH--------RENLFS 336
Query: 306 SKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSEIA--QIFDAISYKKGSFLIR 363
+ + + LS+V L+ + L S P+S PI S ++ + Y KGS ++R
Sbjct: 337 EEMTKTV--TTRLSHVDLLRSVQFLEDSSPLSHPIRPESYVSMENFYTTTVYDKGSEVMR 394
Query: 364 MMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWT 423
M + L + +++G Y+ K A +D ++ E ++ K + + + + W
Sbjct: 395 MYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAM-EQAYKMKKADNSANLNQYL-LWF 452
Query: 424 LQTGYPIVDVTREYGKGGK 442
Q+G P V Y K
Sbjct: 453 SQSGTPHVSFKYNYDAEKK 471
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 23/237 (9%)
Query: 204 ERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAH 263
E F + Y L +VA+ F+ GAMEN GL + +L ++ + I I H
Sbjct: 238 EERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGH 297
Query: 264 ELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLL 323
E H W GN VT + W L L EG + + +D +R ++ ++NV
Sbjct: 298 EYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNR----------INNVRT 347
Query: 324 IFPLDSLSSSHPVSVPIGNPS---EIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSN 380
+ L + P++ PI P E+ + Y+KG+ +IRM+++ L + FQ+G+
Sbjct: 348 MRGLQFAEDASPMAHPI-RPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQL 406
Query: 381 YLNKYQYRNAEQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREY 437
Y ++ A DD +++ +A N+ + W Q+G PIV V +Y
Sbjct: 407 YFERHDGSAATCDDFVQAMEDAS--------NVDLSHFR-RWYSQSGTPIVTVKDDY 454
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 23/237 (9%)
Query: 204 ERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAH 263
E F + Y L +VA+ F+ GAMEN GL + +L ++ + I I H
Sbjct: 259 EERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGH 318
Query: 264 ELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLL 323
E H W GN VT + W L L EG + + +D +R ++ ++NV
Sbjct: 319 EYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNR----------INNVRT 368
Query: 324 IFPLDSLSSSHPVSVPIGNPS---EIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSN 380
+ L + P++ PI P E+ + Y+KG+ +IRM+++ L + FQ+G+
Sbjct: 369 MRGLQFAEDASPMAHPI-RPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQL 427
Query: 381 YLNKYQYRNAEQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREY 437
Y ++ A DD +++ +A N+ + W Q+G PIV V +Y
Sbjct: 428 YFERHDGSAATCDDFVQAMEDAS--------NVDLSHFR-RWYSQSGTPIVTVKDDY 475
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 107/237 (45%), Gaps = 23/237 (9%)
Query: 204 ERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAH 263
E F + Y L +VA+ F+ GAMEN GL + +L ++ + I I H
Sbjct: 259 EERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGH 318
Query: 264 ELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLL 323
E H W GN VT + W L L EG + + +D +R ++ ++NV
Sbjct: 319 EYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNR----------INNVRT 368
Query: 324 IFPLDSLSSSHPVSVPIGNPS---EIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSN 380
+ L + P++ PI P E+ + Y+KG+ +IRM+++ L + FQ+G+
Sbjct: 369 MRGLQFAEDASPMAHPI-RPDMVIEMNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQL 427
Query: 381 YLNKYQYRNAEQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREY 437
Y ++ A DD +++ +A N+ + W Q+G PIV V +Y
Sbjct: 428 YFERHDGSAATCDDFVQAMEDAS--------NVDLSHFR-RWYSQSGTPIVTVKDDY 475
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 16/202 (7%)
Query: 188 QVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDV 247
+V FA E+ + E F + Y L +VA+ DF+ GA EN GL + +L D
Sbjct: 218 KVGFAVESLKNAXKWDETRFGLEYDLDIFXVVAVGDFNXGAXENKGLNIFNTKFVLADSR 277
Query: 248 RSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSK 307
++ + I + + HE H W GN VT + W L L EG + + DR +R +
Sbjct: 278 TATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRR 337
Query: 308 HSWKLLDGEALSNVLLI----FPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIR 363
+ N+ L+ FP D+ ++HPV + E + Y+KG+ ++R
Sbjct: 338 ----------IENIRLLRQHQFPEDAGPTAHPVRP--ASYEEXNNFYTXTVYEKGAEVVR 385
Query: 364 MMNSFLSGKVFQQGVSNYLNKY 385
++ L + FQ+G Y ++
Sbjct: 386 XYHTLLGEEGFQKGXKLYFQRH 407
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 27/198 (13%)
Query: 218 MVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMK 277
+V P F G MEN +T+ LL D S++N IAHE++H W GNLVT K
Sbjct: 259 LVLPPSFPYGGMEN-PCLTFVTPTLLAGD--------KSLSNVIAHEISHSWTGNLVTNK 309
Query: 278 WWTDLWLNEGFATYM----AAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSS 333
W WLNEG Y+ + +++ + W GE ++V + +
Sbjct: 310 TWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGW----GELQNSV------KTFGET 359
Query: 334 HPVSVPIGNPSEIAQ--IFDAISYKKGSFLIRMMNSFLSG-KVFQQGVSNYLNKYQYRNA 390
HP + + + ++I + ++ Y+KG L+ + L G ++F + Y+ K+ Y++
Sbjct: 360 HPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSI 419
Query: 391 EQDDLWESLTEAGHRSKV 408
DD W+ + + KV
Sbjct: 420 TTDD-WKDFLYSYFKDKV 436
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 27/198 (13%)
Query: 218 MVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMK 277
+V P F G MEN +T+ LL D S++N IAHE++H W GNLVT K
Sbjct: 265 LVLPPSFPYGGMEN-PCLTFVTPTLLAGD--------KSLSNVIAHEISHSWTGNLVTNK 315
Query: 278 WWTDLWLNEGFATYM----AAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSS 333
W WLNEG Y+ + +++ + W GE ++V + +
Sbjct: 316 TWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGW----GELQNSV------KTFGET 365
Query: 334 HPVSVPIGNPSEIAQ--IFDAISYKKGSFLIRMMNSFLSG-KVFQQGVSNYLNKYQYRNA 390
HP + + + ++I + ++ Y+KG L+ + L G ++F + Y+ K+ Y++
Sbjct: 366 HPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSI 425
Query: 391 EQDDLWESLTEAGHRSKV 408
DD W+ + + KV
Sbjct: 426 TTDD-WKDFLYSYFKDKV 442
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 27/198 (13%)
Query: 218 MVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMK 277
+V P F G MEN +T+ LL D S++N IAHE++H W GNLVT K
Sbjct: 259 LVLPPSFPYGGMEN-PCLTFVTPTLLAGD--------KSLSNVIAHEISHSWTGNLVTNK 309
Query: 278 WWTDLWLNEGFATYM----AAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSS 333
W WLNEG Y+ + +++ + W GE ++V + +
Sbjct: 310 TWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGW----GELQNSV------KTFGET 359
Query: 334 HPVSVPIGNPSEIAQ--IFDAISYKKGSFLIRMMNSFLSG-KVFQQGVSNYLNKYQYRNA 390
HP + + + ++I + ++ Y+KG L+ + L G ++F + Y+ K+ Y++
Sbjct: 360 HPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSI 419
Query: 391 EQDDLWESLTEAGHRSKV 408
DD W+ + + KV
Sbjct: 420 TTDD-WKDFLYSYFKDKV 436
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 27/198 (13%)
Query: 218 MVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMK 277
+V P F G MEN +T+ LL D S++N IAHE++H W GNLVT K
Sbjct: 257 LVLPPSFPYGGMEN-PCLTFVTPTLLAGD--------KSLSNVIAHEISHSWTGNLVTNK 307
Query: 278 WWTDLWLNEGFATYM----AAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSS 333
W WLNEG Y+ + +++ + W GE ++V + +
Sbjct: 308 TWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGW----GELQNSV------KTFGET 357
Query: 334 HPVSVPIGNPSEIAQ--IFDAISYKKGSFLIRMMNSFLSG-KVFQQGVSNYLNKYQYRNA 390
HP + + + ++I + ++ Y+KG L+ + L G ++F + Y+ K+ Y++
Sbjct: 358 HPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSI 417
Query: 391 EQDDLWESLTEAGHRSKV 408
DD W+ + + KV
Sbjct: 418 TTDD-WKDFLYSYFKDKV 434
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 27/198 (13%)
Query: 218 MVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMK 277
+V P F G MEN +T+ LL D S++N IAHE++H W GNLVT K
Sbjct: 259 LVLPPSFPYGGMEN-PCLTFVTPTLLAGD--------KSLSNVIAHEISHSWTGNLVTNK 309
Query: 278 WWTDLWLNEGFATYM----AAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSS 333
W WLNEG Y+ + +++ + W GE ++V + +
Sbjct: 310 TWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGW----GELQNSV------KTFGET 359
Query: 334 HPVSVPIGNPSEIAQ--IFDAISYKKGSFLIRMMNSFLSG-KVFQQGVSNYLNKYQYRNA 390
HP + + + ++I + ++ Y+KG L+ + L G ++F + Y+ K+ Y++
Sbjct: 360 HPFTKLVVDLTDIDPNVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSI 419
Query: 391 EQDDLWESLTEAGHRSKV 408
DD W+ + + KV
Sbjct: 420 TTDD-WKDFLYSYFKDKV 436
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 27/198 (13%)
Query: 218 MVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMK 277
+V P F G MEN +T+ LL D S++N IAHE++H W GNLVT K
Sbjct: 260 LVLPPSFPYGGMEN-PCLTFVTPTLLAGD--------KSLSNVIAHEISHSWTGNLVTNK 310
Query: 278 WWTDLWLNEGFATYM----AAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSS 333
W WLNEG Y+ + +++ + W GE ++V + +
Sbjct: 311 TWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGW----GELQNSV------KTFGET 360
Query: 334 HPVSVPIGNPSEIAQ--IFDAISYKKGSFLIRMMNSFLSG-KVFQQGVSNYLNKYQYRNA 390
HP + + + ++I + ++ Y+KG L+ + L G ++F + Y+ K+ Y++
Sbjct: 361 HPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSI 420
Query: 391 EQDDLWESLTEAGHRSKV 408
DD W+ + + KV
Sbjct: 421 TTDD-WKDFLYSYFKDKV 437
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 27/198 (13%)
Query: 218 MVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMK 277
+V P F G MEN +T+ LL D S++N IAH+++H W GNLVT K
Sbjct: 265 LVLPPSFPYGGMEN-PCLTFVTPTLLAGD--------KSLSNVIAHQISHSWTGNLVTNK 315
Query: 278 WWTDLWLNEGFATYM----AAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSS 333
W WLNEG Y+ + +++ + W GE ++V + +
Sbjct: 316 TWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGW----GELQNSV------KTFGET 365
Query: 334 HPVSVPIGNPSEIAQ--IFDAISYKKGSFLIRMMNSFLSG-KVFQQGVSNYLNKYQYRNA 390
HP + + + ++I + ++ Y+KG L+ + L G ++F + Y+ K+ Y++
Sbjct: 366 HPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSI 425
Query: 391 EQDDLWESLTEAGHRSKV 408
DD W+ + + KV
Sbjct: 426 TTDD-WKDFLYSYFKDKV 442
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 27/198 (13%)
Query: 218 MVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMK 277
+V P F G M+N +T+ LL D S++N IAHE++H W GNLVT K
Sbjct: 260 LVLPPSFPYGGMQN-PCLTFVTPTLLAGD--------KSLSNVIAHEISHSWTGNLVTNK 310
Query: 278 WWTDLWLNEGFATYM----AAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSS 333
W WLNEG Y+ + +++ + W GE ++V + +
Sbjct: 311 TWDHFWLNEGHTVYLERHICGRLFGEKFRHFNALGGW----GELQNSV------KTFGET 360
Query: 334 HPVSVPIGNPSEIAQ--IFDAISYKKGSFLIRMMNSFLSG-KVFQQGVSNYLNKYQYRNA 390
HP + + + ++I + ++ Y+KG L+ + L G ++F + Y+ K+ Y++
Sbjct: 361 HPFTKLVVDLTDIDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSI 420
Query: 391 EQDDLWESLTEAGHRSKV 408
DD W+ + + KV
Sbjct: 421 TTDD-WKDFLYSYFKDKV 437
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 33/221 (14%)
Query: 218 MVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMK 277
+V + + G ME+ + T+ LL D RS+I + IAHELAH W GNLVT
Sbjct: 265 LVNVDSYPYGGMESPNM-TFATPTLLAHD-RSNI-------DVIAHELAHSWSGNLVTNC 315
Query: 278 WWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVS 337
W WLNEG+ Y+ + + + P ++H L+ L N +DS+ S
Sbjct: 316 SWNHFWLNEGWTVYLERRIIGAIHGEP-TRHFSALIGWSDLQN-----SIDSMKDPERFS 369
Query: 338 VPIGNPSEIAQIFDAIS---YKKGSFLIRMMNSFLSGKV-FQQGVSNYLNKYQYRNAEQD 393
+ N ++ DA S Y+KG L+ + + L GK F + +Y K+ ++ +
Sbjct: 370 TLVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKSLDTF 429
Query: 394 DLWESLTEAGHRSKVLPQNLTVKEIMDS-----WTLQTGYP 429
++L E P+ KEI+DS W + G P
Sbjct: 430 QFLDTLYE------FYPEK---KEILDSVDWETWLYKPGMP 461
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 33/221 (14%)
Query: 218 MVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMK 277
+V + + G ME+ + T+ L+ D RS+I + IAHELAH W GNLVT
Sbjct: 265 LVNVDSYPYGGMESPNM-TFATPTLIAHD-RSNI-------DVIAHELAHSWSGNLVTNC 315
Query: 278 WWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVS 337
W WLNEG+ Y+ + + + P ++H L+ L N +DS+ S
Sbjct: 316 SWNHFWLNEGWTVYLERRIIGAIHGEP-TRHFSALIGWSDLQN-----SIDSMKDPERFS 369
Query: 338 VPIGNPSEIAQIFDAIS---YKKGSFLIRMMNSFLSGKV-FQQGVSNYLNKYQYRNAEQD 393
+ N ++ DA S Y+KG L+ + + L GK F + +Y K+ ++ +
Sbjct: 370 TLVQNLNDNTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKSLDTF 429
Query: 394 DLWESLTEAGHRSKVLPQNLTVKEIMDS-----WTLQTGYP 429
++L E P+ KEI+DS W + G P
Sbjct: 430 QFLDTLYE------FYPEK---KEILDSVDWETWLYKPGMP 461
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 22/210 (10%)
Query: 222 PDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTD 281
P F G MEN L + + D S+ N IAHELAH W GNLVT + W D
Sbjct: 268 PSFPFGGMENPRLSFITPTVVAGDK---------SLVNLIAHELAHSWSGNLVTNESWRD 318
Query: 282 LWLNEGFATYMAAQALNDRY--NRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVP 339
LWLNEGF +Y+ + + + +R + + D A I LD+ + + +
Sbjct: 319 LWLNEGFTSYVENRIMEAVFGTDRAVMEQALGAQDLNA-----EILELDASDTQLYIDLK 373
Query: 340 IGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESL 399
+P + F + Y KG + + + F V Y + + +++ D+ + L
Sbjct: 374 GRDPDD---AFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQSLGTDNFVKYL 430
Query: 400 TEAGHRSKVLPQNLTVKEIMDSWTLQTGYP 429
+ + P ++ EI + W + G P
Sbjct: 431 K--ANLTDKYPNIVSDNEI-NEWIFKAGLP 457
>pdb|2F7V|A Chain A, Structure Of Acetylcitrulline Deacetylase Complexed With
One Co
pdb|2F8H|A Chain A, Structure Of Acetylcitrulline Deacetylase From Xanthomonas
Campestris In Metal-Free Form
Length = 369
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 153 TFRQSNTSNPDLSRVQFRTWARRDVIDQVHILFDSQVDFAAEA 195
TFR + + D++R + R A RDV D + + + VDF EA
Sbjct: 279 TFRGPSLPSGDIARAEERRLAARDVADALDLPIGNAVDFWTEA 321
>pdb|1DXQ|A Chain A, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|B Chain B, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|C Chain C, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
pdb|1DXQ|D Chain D, Crystal Structure Of Mouse Nad[p]h-Quinone Oxidoreductase
Length = 273
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 235 ITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAA 294
+ Y+E L D V H + A+ + + QWFG +K W + L GFA AA
Sbjct: 73 LAYKEGRLSPDIVAE--HKKLEAADLVIFQFPLQWFGVPAILKGWFERVLVAGFAYTYAA 130
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 326 PLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLN 383
P+ ++ H SV + +P + + + Y K S + R + + ++F QG+ + N
Sbjct: 25 PVVRVNVFHKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECN 82
>pdb|1ZSZ|B Chain B, Crystal Structure Of A Computationally Designed Sspb
Heterodimer
Length = 111
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 21 KSAPMSPYLVTSII------STNYYLILQTGYPIVDVTREYGKGGKIV 62
KS+P PYL+ S+ S YL++ Y V+V EY K G+IV
Sbjct: 4 KSSPKRPYLLRSLYDWLVDNSFTPYLVVDATYLGVNVPVEYVKDGQIV 51
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 41 ILQTGYPIVDVTREYGKGGKIVRFS 65
IL+TG ++D+ Y KGGKI F
Sbjct: 127 ILETGIKVIDLLAPYAKGGKIGLFG 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,566,658
Number of Sequences: 62578
Number of extensions: 554008
Number of successful extensions: 1307
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1212
Number of HSP's gapped (non-prelim): 55
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)