Query psy16137
Match_columns 448
No_of_seqs 292 out of 2344
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 21:47:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046|consensus 100.0 8.4E-69 1.8E-73 573.6 32.5 348 66-448 136-497 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 2.1E-63 4.5E-68 532.7 32.1 316 101-440 128-456 (831)
3 PRK14015 pepN aminopeptidase N 100.0 1.5E-58 3.3E-63 490.6 32.7 321 101-448 129-472 (875)
4 TIGR02414 pepN_proteo aminopep 100.0 1.3E-58 2.8E-63 489.7 31.0 321 102-448 117-459 (863)
5 COG0308 PepN Aminopeptidase N 100.0 5E-57 1.1E-61 483.2 27.9 322 102-448 145-484 (859)
6 TIGR02411 leuko_A4_hydro leuko 100.0 4.4E-53 9.5E-58 436.2 22.3 301 101-436 134-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 2E-46 4.3E-51 374.3 16.5 243 101-358 134-390 (390)
8 KOG1047|consensus 100.0 1.9E-42 4E-47 332.8 16.7 297 102-432 140-458 (613)
9 KOG1932|consensus 99.9 6.2E-25 1.3E-29 226.6 19.6 298 102-444 185-514 (1180)
10 KOG1046|consensus 99.6 7.7E-15 1.7E-19 158.5 9.2 95 1-110 442-536 (882)
11 COG3975 Predicted protease wit 99.4 4E-12 8.6E-17 123.8 16.2 218 189-431 183-432 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.3 3.3E-12 7.1E-17 106.3 6.7 107 254-381 22-128 (128)
13 TIGR02414 pepN_proteo aminopep 98.6 9.8E-08 2.1E-12 102.9 7.6 82 1-93 399-482 (863)
14 PRK14015 pepN aminopeptidase N 98.5 3.7E-07 8E-12 98.7 8.1 81 1-92 412-494 (875)
15 TIGR02412 pepN_strep_liv amino 98.5 2.9E-07 6.3E-12 100.1 7.4 78 1-94 405-482 (831)
16 COG0308 PepN Aminopeptidase N 98.4 2.2E-07 4.8E-12 101.0 6.1 81 1-94 426-506 (859)
17 PF10460 Peptidase_M30: Peptid 98.0 0.00044 9.4E-09 66.8 17.4 146 254-426 136-285 (366)
18 PF05299 Peptidase_M61: M61 gl 97.5 3.1E-05 6.6E-10 62.9 0.2 40 258-297 5-55 (122)
19 PF04450 BSP: Peptidase of pla 96.8 0.029 6.3E-07 50.3 12.4 171 190-421 24-204 (205)
20 PF07607 DUF1570: Protein of u 96.3 0.0023 5E-08 52.5 2.1 38 259-296 3-42 (128)
21 TIGR02411 leuko_A4_hydro leuko 96.0 0.0022 4.8E-08 67.4 0.6 49 1-52 400-451 (601)
22 PF10026 DUF2268: Predicted Zn 95.4 0.1 2.3E-06 46.6 9.0 94 196-296 5-108 (195)
23 PRK04860 hypothetical protein; 91.4 0.41 8.8E-06 41.1 5.2 72 191-269 4-75 (160)
24 PF10023 DUF2265: Predicted am 85.8 0.67 1.4E-05 44.5 2.9 39 255-301 163-201 (337)
25 smart00731 SprT SprT homologue 85.4 1.1 2.4E-05 37.9 3.9 61 205-271 13-73 (146)
26 COG4324 Predicted aminopeptida 84.9 0.74 1.6E-05 42.0 2.7 41 253-301 193-233 (376)
27 PF01863 DUF45: Protein of unk 82.8 3.3 7.1E-05 37.1 6.1 72 190-272 108-179 (205)
28 PF01447 Peptidase_M4: Thermol 81.1 1.7 3.6E-05 36.9 3.3 75 189-268 69-146 (150)
29 PF12315 DUF3633: Protein of u 74.8 4.2 9.2E-05 36.1 4.0 40 258-301 94-133 (212)
30 PF10263 SprT-like: SprT-like 74.4 11 0.00024 32.0 6.5 20 253-272 56-75 (157)
31 PF03272 Enhancin: Viral enhan 74.0 1.1E+02 0.0025 33.4 15.3 218 165-422 141-377 (775)
32 COG2719 SpoVR Uncharacterized 73.8 35 0.00076 33.9 10.1 65 283-365 269-334 (495)
33 PF12725 DUF3810: Protein of u 72.4 2.5 5.3E-05 40.9 2.2 29 256-296 195-223 (318)
34 PRK04351 hypothetical protein; 72.3 5.7 0.00012 33.7 4.1 59 202-268 13-72 (149)
35 cd04269 ZnMc_adamalysin_II_lik 70.5 21 0.00046 31.5 7.7 15 255-269 129-143 (194)
36 PF06114 DUF955: Domain of unk 69.7 9 0.0002 30.4 4.7 33 239-275 28-60 (122)
37 PF01421 Reprolysin: Reprolysi 63.4 13 0.00029 33.0 4.9 39 228-268 104-142 (199)
38 PF13699 DUF4157: Domain of un 62.8 20 0.00043 26.7 4.9 63 199-269 6-73 (79)
39 COG4783 Putative Zn-dependent 62.0 6.8 0.00015 39.3 2.9 58 211-274 89-147 (484)
40 COG3227 LasB Zinc metalloprote 60.1 9.5 0.00021 38.2 3.5 101 189-296 271-377 (507)
41 PRK03982 heat shock protein Ht 59.8 13 0.00027 35.5 4.3 20 253-272 121-140 (288)
42 PRK03001 M48 family peptidase; 59.2 16 0.00034 34.7 4.8 20 253-272 120-139 (283)
43 COG1451 Predicted metal-depend 58.9 20 0.00044 32.6 5.2 72 190-272 119-190 (223)
44 cd04272 ZnMc_salivary_gland_MP 58.7 22 0.00048 32.2 5.6 13 257-269 145-157 (220)
45 PRK05457 heat shock protein Ht 58.4 17 0.00036 34.6 4.8 21 253-273 130-150 (284)
46 PRK04897 heat shock protein Ht 57.0 15 0.00032 35.2 4.2 20 253-272 133-152 (298)
47 PF01435 Peptidase_M48: Peptid 56.2 8.3 0.00018 34.9 2.3 24 253-276 85-108 (226)
48 PF08325 WLM: WLM domain; Int 52.9 87 0.0019 27.6 8.1 24 249-272 74-97 (186)
49 PHA02456 zinc metallopeptidase 52.0 14 0.00031 29.0 2.6 12 258-269 80-91 (141)
50 KOG3607|consensus 52.0 38 0.00083 36.6 6.7 92 167-268 241-334 (716)
51 PRK01345 heat shock protein Ht 51.3 21 0.00047 34.4 4.4 21 253-273 120-140 (317)
52 PRK03072 heat shock protein Ht 51.1 21 0.00045 34.0 4.2 21 253-273 123-143 (288)
53 COG2856 Predicted Zn peptidase 50.7 67 0.0014 29.0 7.1 41 258-298 73-118 (213)
54 PF12174 RST: RCD1-SRO-TAF4 (R 49.3 57 0.0012 23.7 5.2 45 359-404 12-56 (70)
55 PF13574 Reprolysin_2: Metallo 49.0 12 0.00026 32.6 2.0 13 257-269 111-123 (173)
56 PRK02391 heat shock protein Ht 46.8 30 0.00065 33.1 4.5 20 254-273 130-149 (296)
57 COG0501 HtpX Zn-dependent prot 46.4 21 0.00046 33.9 3.6 63 205-275 110-175 (302)
58 PRK02870 heat shock protein Ht 43.2 31 0.00067 33.6 4.0 16 253-268 169-184 (336)
59 PF08014 DUF1704: Domain of un 43.2 1.2E+02 0.0027 29.6 8.2 84 198-296 117-213 (349)
60 KOG2719|consensus 43.1 42 0.0009 33.5 4.9 63 205-272 228-295 (428)
61 COG5504 Predicted Zn-dependent 42.9 1E+02 0.0022 28.5 6.8 90 194-296 79-183 (280)
62 PF09768 Peptidase_M76: Peptid 42.9 78 0.0017 27.6 6.0 17 253-269 67-83 (173)
63 PRK01265 heat shock protein Ht 42.8 34 0.00074 33.1 4.2 20 253-272 136-155 (324)
64 KOG2661|consensus 42.7 60 0.0013 31.2 5.6 21 253-273 271-291 (424)
65 cd04279 ZnMc_MMP_like_1 Zinc-d 40.0 1.6E+02 0.0034 24.8 7.7 37 167-211 2-41 (156)
66 PF04293 SpoVR: SpoVR like pro 38.8 90 0.0019 31.4 6.5 18 283-302 263-280 (426)
67 PF08479 POTRA_2: POTRA domain 38.5 1.5E+02 0.0032 21.5 6.3 41 377-434 18-58 (76)
68 COG3091 SprT Zn-dependent meta 38.4 35 0.00076 28.7 3.0 14 255-268 59-72 (156)
69 PRK11767 SpoVR family protein; 37.8 2.2E+02 0.0047 29.3 9.0 87 259-369 254-341 (498)
70 PF09836 DUF2063: Uncharacteri 37.0 33 0.00072 26.3 2.7 31 364-394 54-84 (94)
71 PF13688 Reprolysin_5: Metallo 28.9 41 0.00089 29.7 2.2 16 254-269 139-154 (196)
72 cd04267 ZnMc_ADAM_like Zinc-de 26.6 1.4E+02 0.003 26.2 5.2 14 256-269 132-145 (192)
73 PF13402 M60-like: Peptidase M 26.1 1.5E+02 0.0033 28.2 5.8 99 187-296 143-253 (307)
74 PF05569 Peptidase_M56: BlaR1 26.0 64 0.0014 30.7 3.2 29 240-268 179-207 (299)
75 PF07735 FBA_2: F-box associat 24.4 33 0.00072 24.4 0.7 22 411-433 45-66 (70)
76 PF08766 DEK_C: DEK C terminal 24.3 1E+02 0.0022 20.9 3.0 33 371-403 2-34 (54)
77 PF14891 Peptidase_M91: Effect 23.9 54 0.0012 28.5 2.0 14 256-269 102-115 (174)
78 cd00203 ZnMc Zinc-dependent me 21.2 2E+02 0.0044 24.2 5.1 23 189-211 20-42 (167)
79 cd04273 ZnMc_ADAMTS_like Zinc- 20.1 60 0.0013 29.0 1.6 13 257-269 140-152 (207)
No 1
>KOG1046|consensus
Probab=100.00 E-value=8.4e-69 Score=573.60 Aligned_cols=348 Identities=44% Similarity=0.739 Sum_probs=316.2
Q ss_pred eeeeeeCCCCCCCCCCceeeeeeeeeccCCCCCCCCCcccccCCccCccc-------ccCCCceeeecccccceeeecCC
Q psy16137 66 QRRFLALPNLKKEDSSQCWWIPITLMTSKSADFSDSKPIWLPCDQQKSAG-------KQADQHDIISNEKMELREEMGES 138 (448)
Q Consensus 66 Q~rf~~~~~~~~~~~~~~W~IPit~~~~~~~~f~~~~~~wl~~~d~p~~~-------~~p~~~~visn~~~~~~~~~~~~ 138 (448)
.+.|+..+.... ....-+++.|++.+..++ .-|||.|+|..| .||++++++|||++. .....++
T Consensus 136 ~~G~y~s~y~~~--~~~~~~~~~Tqfept~AR------~~FPCfDeP~~KAtF~Itl~hp~~~~aLSNm~v~-~~~~~~~ 206 (882)
T KOG1046|consen 136 SEGFYRSSYTDS--EGSEKSIAATQFEPTDAR------RAFPCFDEPAFKATFTITLVHPKGYTALSNMPVI-KEEPVDD 206 (882)
T ss_pred cceeeeecccCC--CCceEEEEEeccCccchh------hcCCCCCcccccCceEEEEEecCCceEeecCccc-ccccccC
Confidence 456666543211 222357888888776544 579999999876 489999999999987 5556666
Q ss_pred CEEEEEe----ecCCceEEEE--EeeccC-CCCCCceEEEEEccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHhcCCC
Q psy16137 139 DWLIVNK----QMTALALTFR--QSNTSN-PDLSRVQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRY 211 (448)
Q Consensus 139 ~~~~~~f----~ms~y~~a~~--~~~~~~-~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~g~~y 211 (448)
||++++| +||+|++||+ +|...+ .+..|++++||++|+...+ .+++++.+.++|+||+++||++|
T Consensus 207 ~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~--------~~~al~~~~~~L~~~e~~f~i~y 278 (882)
T KOG1046|consen 207 GWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQ--------GQFALEVATKVLEFYEDYFGIPY 278 (882)
T ss_pred CeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhH--------HHHHHHHHHHHHHHHHHHhCCCC
Confidence 7999999 9999999999 444433 5667899999999999999 89999999999999999999999
Q ss_pred CCCCccEEEeCCCCCCccccccchhcccceeeecCCCCCHHHHHHHHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHH
Q psy16137 212 PLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATY 291 (448)
Q Consensus 212 P~~k~~~v~~p~~~~~~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y 291 (448)
|++|+|+|++|+|..|||||||||+|++..+++++..++..++++++.+||||+|||||||+||++||+|+||+||||+|
T Consensus 279 PLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVTm~wW~dLWLnEGfAt~ 358 (882)
T KOG1046|consen 279 PLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVTMKWWNDLWLNEGFATY 358 (882)
T ss_pred CCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCcccHhhhhhhhhcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccCCCCCcchhhhhhHHHHHHHhhccccccCCCCcccccCCChhhhhhcccccccchhhHHHHHHHHhhcH
Q psy16137 292 MAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSG 371 (448)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~~~~Y~Kg~~vl~mL~~~iG~ 371 (448)
++++. ++..+ |+|.+.+++..+.+..++..|++.++||+..++..+.++.+.|+.++|.||++|||||+..+|+
T Consensus 359 ~~~~~--v~~~~----p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasvlRML~~~lGe 432 (882)
T KOG1046|consen 359 VEYLA--VDHLF----PEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASVLRMLESLLGE 432 (882)
T ss_pred HHHHh--hccCC----cchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHHHHHHHHHHCH
Confidence 99999 99898 9999989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHhcCCCCceEEEEEeecCCeeEEEEEC
Q psy16137 372 KVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYGKGGKIVRFSQ 448 (448)
Q Consensus 372 ~~f~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~~~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~~~~~~v~i~Q 448 (448)
+.|++||+.|+.++++++++++|||++|+.. .+.+++++|+.|+.|+|||+|+|.++++ +++|+|
T Consensus 433 ~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~--------~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~----~~~l~Q 497 (882)
T KOG1046|consen 433 EVFRKGLRSYLKKHQYSNAKTEDLWDALEEG--------SGLDVSELMDTWTKQMGYPVVTVERNGD----SLTLTQ 497 (882)
T ss_pred HHHHHHHHHHHHHhccCCCCchhHHHHHhcc--------CCCCHHHHHhhhhcCCCCceEEEEecCC----EEEEeh
Confidence 9999999999999999999999999999944 7899999999999999999999999965 688888
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=2.1e-63 Score=532.74 Aligned_cols=316 Identities=27% Similarity=0.443 Sum_probs=279.2
Q ss_pred CCcccccCCccCccc-------ccCCCceeeecccccceeeecCCCEEEEEe----ecCCceEEEE--EeeccCCCCCCc
Q psy16137 101 SKPIWLPCDQQKSAG-------KQADQHDIISNEKMELREEMGESDWLIVNK----QMTALALTFR--QSNTSNPDLSRV 167 (448)
Q Consensus 101 ~~~~wl~~~d~p~~~-------~~p~~~~visn~~~~~~~~~~~~~~~~~~f----~ms~y~~a~~--~~~~~~~~~~~~ 167 (448)
.++.||||.|+|..| ++|++|+|+|||++. +. ...+++.+++| |||+|++||+ +|.......+|+
T Consensus 128 ~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v~sNg~~~-~~-~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~~~~gv 205 (831)
T TIGR02412 128 DARRVFAVFDQPDLKANFKFSVKAPEDWTVISNSRET-DV-TPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQDESRSY 205 (831)
T ss_pred CceeeEecCCCCCCceeEEEEEEECCCceEECCCccc-cc-cccCCCeEEEecCCCCcccceEEEEEeceEEEeecCCCE
Confidence 366899999999876 589999999999975 22 22346677888 8999999999 776654456789
Q ss_pred eEEEEEccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCccEEEeCCCCCCccccccchhcccceeeecCC
Q psy16137 168 QFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDV 247 (448)
Q Consensus 168 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~g~~yP~~k~~~v~~p~~~~~~me~~gli~~~e~~ll~~~~ 247 (448)
+|++|++|+..+.+ +.+++++.++++|+||+++||+|||++|+|+|++|++..|||||||+|+|++..+ +.+.
T Consensus 206 pi~v~~~~~~~~~~------~~~~al~~~~~~l~~~e~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~~l-~~~~ 278 (831)
T TIGR02412 206 PLGIYARRSLAQYL------DADAIFTITRQGLAFFHRKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAENFL-HRAE 278 (831)
T ss_pred EEEEEECcchhhhh------hHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEcCCCCCCcccccceeeechhhc-cCCc
Confidence 99999999876541 1468999999999999999999999999999999999999999999999999844 4433
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccccCCCCCcchhhhhhHHHHHHHhhccc
Q psy16137 248 RSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPL 327 (448)
Q Consensus 248 ~~~~~~~~~~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (448)
.+...++.+..+++||+|||||||+||++||+|+|||||||+|+++++ ++... +.+.....+.......++..
T Consensus 279 -~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWLnEGFAty~e~~~--~~~~~----~~~~~~~~f~~~~~~~a~~~ 351 (831)
T TIGR02412 279 -ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWLNESFAEYMGTLA--SAEAT----EYTDAWTTFAAQGKQWAYEA 351 (831)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhHHHHHHHHHHHHH--HHhcC----CcchHHHHHHHHHHHHHHHH
Confidence 335566778899999999999999999999999999999999999999 88887 55666667777777778888
Q ss_pred cccCCCCcccccCCChhhhhhcccccccchhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCC
Q psy16137 328 DSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRSK 407 (448)
Q Consensus 328 d~~~~~~p~~~~~~~~~~~~~~~~~~~Y~Kg~~vl~mL~~~iG~~~f~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~~ 407 (448)
|...+.+|+..++.++.++...|+.++|.||+++|+||+..||++.|+++||.|+++|++++++++|||++++++
T Consensus 352 D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lGee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~----- 426 (831)
T TIGR02412 352 DQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVGEEAFFAGVNAYFKRHAFGNATLDDLIDSLAKA----- 426 (831)
T ss_pred hcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHCHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-----
Confidence 999999999988888888888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHhcCCCCceEEEEEeecCC
Q psy16137 408 VLPQNLTVKEIMDSWTLQTGYPIVDVTREYGKG 440 (448)
Q Consensus 408 ~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~~~ 440 (448)
+|.+|++||++|++++|+|+|+|++.++++
T Consensus 427 ---sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~ 456 (831)
T TIGR02412 427 ---SGRDLSAWSDAWLETAGVNTLTPEITTDGG 456 (831)
T ss_pred ---hCCCHHHHHHHHHcCCCCceEEEEEEECCC
Confidence 788999999999999999999999988765
No 3
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=1.5e-58 Score=490.55 Aligned_cols=321 Identities=23% Similarity=0.317 Sum_probs=266.2
Q ss_pred CCcccccCCccCccc-------ccCC-Cc-eeeecccccceeeecCCCEEEEEe----ecCCceEEEE--EeeccC----
Q psy16137 101 SKPIWLPCDQQKSAG-------KQAD-QH-DIISNEKMELREEMGESDWLIVNK----QMTALALTFR--QSNTSN---- 161 (448)
Q Consensus 101 ~~~~wl~~~d~p~~~-------~~p~-~~-~visn~~~~~~~~~~~~~~~~~~f----~ms~y~~a~~--~~~~~~---- 161 (448)
.++.|+||.|+|+.+ ++|+ .| .++|||+++ ......+|+.+++| |||+|++||+ +|....
T Consensus 129 gAR~~fPc~D~P~~KAtf~itI~~p~~~~~~~lSNG~l~-~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~ 207 (875)
T PRK14015 129 GFRRITYFLDRPDVLARYTVRIEADKAKYPVLLSNGNLV-ESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFT 207 (875)
T ss_pred CcCCcccCCCCCCCCeeEEEEEEEccccCeEEecCCccc-cceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEee
Confidence 466899999999876 4788 58 679999986 34344578888888 8999999999 554432
Q ss_pred -CCCCCceEEEEEccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCccEEEeCCCCCCccccccchhcccc
Q psy16137 162 -PDLSRVQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRES 240 (448)
Q Consensus 162 -~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~g~~yP~~k~~~v~~p~~~~~~me~~gli~~~e~ 240 (448)
...+++++++|++|+..+. ++++++.++++|+++|++||.|||++++++|++|+|..|||||+|+++|++.
T Consensus 208 ~~~g~~vpl~iy~~p~~~~~--------~~~al~~~~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~ 279 (875)
T PRK14015 208 TRSGREVALEIYVEPGNLDK--------CDHAMDSLKKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSK 279 (875)
T ss_pred ccCCCeEEEEEEEeCCcHHH--------HHHHHHHHHHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccc
Confidence 2334599999999998888 8999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCHHHHHHHHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccccCCCCCcchh-hhhhHHHH
Q psy16137 241 ALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWK-LLDGEALS 319 (448)
Q Consensus 241 ~ll~~~~~~~~~~~~~~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 319 (448)
.++.++...+..+...+..+|+||+|||||||+||++||+|+||+||||+|++..+ ..... + +.+. +.+.....
T Consensus 280 ~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~~~W~dLWLnEGFAty~e~~~--~~~~~-~--~~~~~~~~~~~l~ 354 (875)
T PRK14015 280 YVLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEF--SADLG-S--RAVKRIEDVRVLR 354 (875)
T ss_pred eEecCcccCCHHHHHHHHHHHHHHHHHHHHhCcceecchhhhhhhhHHHHHHHHHH--HHHhh-h--HHHHHHHHHHHHh
Confidence 99988876667777788899999999999999999999999999999999999887 55543 1 2221 11111111
Q ss_pred HHHhhccccccCCCCcccccCCChhhhhhcccccccchhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q psy16137 320 NVLLIFPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESL 399 (448)
Q Consensus 320 ~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~~~~Y~Kg~~vl~mL~~~iG~~~f~~~l~~yl~~~~~~~~~~~df~~~l 399 (448)
...+..|.....+|+.. ..+.++...|+.++|.||+++||||+..||++.|+++||.|+++|++++++++||++++
T Consensus 355 --~~~~~~D~~~~a~pi~p--~~~~~i~~~f~~~~Y~KGA~vLrMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~al 430 (875)
T PRK14015 355 --AAQFAEDAGPMAHPVRP--DSYIEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAM 430 (875)
T ss_pred --hhcccccccccCCCCCC--cchhhHHhcccchhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 12344565555677653 23456677899999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCCCCCCHHHHHHHHhcCCCCceEEEEEeecC--CeeEEEEEC
Q psy16137 400 TEAGHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYGK--GGKIVRFSQ 448 (448)
Q Consensus 400 ~~~~~~~~~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~~--~~~~v~i~Q 448 (448)
+++ +|.++.+|+ +|++|+|+|.|+|+++|+. +..+++|+|
T Consensus 431 e~a--------sg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q 472 (875)
T PRK14015 431 EDA--------SGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQ 472 (875)
T ss_pred HHH--------hCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEE
Confidence 999 788999986 8999999999999999963 335677776
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=1.3e-58 Score=489.67 Aligned_cols=321 Identities=22% Similarity=0.316 Sum_probs=267.1
Q ss_pred CcccccCCccCccc-------ccCCC-c-eeeecccccceeeecCCCEEEEEe----ecCCceEEEE--EeeccC-----
Q psy16137 102 KPIWLPCDQQKSAG-------KQADQ-H-DIISNEKMELREEMGESDWLIVNK----QMTALALTFR--QSNTSN----- 161 (448)
Q Consensus 102 ~~~wl~~~d~p~~~-------~~p~~-~-~visn~~~~~~~~~~~~~~~~~~f----~ms~y~~a~~--~~~~~~----- 161 (448)
++.++||.|+|+.+ ++|++ | .++|||+++ ......+|+.+++| |||+|++||+ +|....
T Consensus 117 aR~ifpc~DeP~~kAtf~vtI~~p~~~y~v~lSNg~~~-~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t 195 (863)
T TIGR02414 117 FRRITYFPDRPDVMSRYTVTITADKKKYPVLLSNGNKI-ASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTT 195 (863)
T ss_pred CCcCCCCCCCCCCceEEEEEEEECCCcceEEEeCCccc-cceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeec
Confidence 55799999999876 47875 7 568999875 33344678888888 8999999999 554432
Q ss_pred CCCCCceEEEEEccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCccEEEeCCCCCCccccccchhcccce
Q psy16137 162 PDLSRVQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESA 241 (448)
Q Consensus 162 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~g~~yP~~k~~~v~~p~~~~~~me~~gli~~~e~~ 241 (448)
....++++++|++|+..+. ++++++.++++|+++|++||.|||++|+++|++|+|..||||||||++|++..
T Consensus 196 ~sg~~v~l~iy~~p~~~~~--------~~~al~~~~~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~ 267 (863)
T TIGR02414 196 KSGREVALRVYVEEGNKDK--------CDHAMESLKKAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKY 267 (863)
T ss_pred cCCCceEEEEEEccCcHHH--------HHHHHHHHHHHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccce
Confidence 2335688999999998888 89999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCHHHHHHHHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccccCCCCCcchhhhhhHHHHHH
Q psy16137 242 LLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNV 321 (448)
Q Consensus 242 ll~~~~~~~~~~~~~~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (448)
++.++...+..+...+..+++||+|||||||+||++||+++||+||||+|++..+ ..... + .+..++.+...+.
T Consensus 268 lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~~W~~LWLnEGfAty~e~~~--~~~~~-~-~~~~~~~~~~~lr-- 341 (863)
T TIGR02414 268 VLADPETATDADYERIESVIAHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEF--SADMT-S-RAVKRIEDVRLLR-- 341 (863)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeecchhhhhhhhhHHHHHHHHH--HHHhh-h-HHHHHHHHHHHHH--
Confidence 9999887777778888999999999999999999999999999999999999877 55443 1 0111121111111
Q ss_pred HhhccccccCCCCcccccCCChhhhhhcccccccchhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q psy16137 322 LLIFPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTE 401 (448)
Q Consensus 322 ~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~~~~Y~Kg~~vl~mL~~~iG~~~f~~~l~~yl~~~~~~~~~~~df~~~l~~ 401 (448)
...+..|.....+|+.. ..+.++...|+.++|.||++|||||+..||++.|+++||.|+++|++++++++||++++++
T Consensus 342 ~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vLrML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~ 419 (863)
T TIGR02414 342 AHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEVIRMLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMED 419 (863)
T ss_pred hhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 12345676677777754 3445667789999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCHHHHHHHHhcCCCCceEEEEEeecCCe--eEEEEEC
Q psy16137 402 AGHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYGKGG--KIVRFSQ 448 (448)
Q Consensus 402 ~~~~~~~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~~~~--~~v~i~Q 448 (448)
+ +|.++++|+ +|++|+|+|.|+|+++|+.++ .+++++|
T Consensus 420 a--------sg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q 459 (863)
T TIGR02414 420 A--------SGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQ 459 (863)
T ss_pred H--------hCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEE
Confidence 9 788999985 899999999999999997543 5677776
No 5
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-57 Score=483.19 Aligned_cols=322 Identities=35% Similarity=0.617 Sum_probs=288.9
Q ss_pred CcccccCCccCccc-------ccCCCceeeecccccceeeecCCCEEEEEe----ecCCceEEEE--EeeccC--C-CC-
Q psy16137 102 KPIWLPCDQQKSAG-------KQADQHDIISNEKMELREEMGESDWLIVNK----QMTALALTFR--QSNTSN--P-DL- 164 (448)
Q Consensus 102 ~~~wl~~~d~p~~~-------~~p~~~~visn~~~~~~~~~~~~~~~~~~f----~ms~y~~a~~--~~~~~~--~-~~- 164 (448)
++.|+||.|+|+.+ ..++.+.++|||+.. ......+|+.++.| |||+|++|++ +|.... . +.
T Consensus 145 aR~~fpc~D~P~~katf~~~i~~~k~~~~iSN~~~~-~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~ 223 (859)
T COG0308 145 ARRIFPCIDEPDVKATFTLTIRADKGPKLISNGNLI-DGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRS 223 (859)
T ss_pred CceeeecCCCCCCcceeEEEEEecCcceeeecCCcc-ccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCC
Confidence 55899999999876 357789999999987 45555677889999 9999999999 443322 1 11
Q ss_pred CCceEEEEEccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCccEEEeCCCCCCccccccchhcccceeee
Q psy16137 165 SRVQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLF 244 (448)
Q Consensus 165 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~g~~yP~~k~~~v~~p~~~~~~me~~gli~~~e~~ll~ 244 (448)
+++++.+|++++.... ++++++.+.+.++|++++||.|||+++ ++|++|+|..|||||||+++|++..++.
T Consensus 224 ~~v~l~iy~~~g~~~~--------a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~ 294 (859)
T COG0308 224 RDVPLEIYVPPGVLDR--------AKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLA 294 (859)
T ss_pred CCeeEEEEecCcchhh--------hhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEee
Confidence 5899999999977777 899999999999999999999999999 8999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccccCCCCCc-chhhhhhHHHHHHHh
Q psy16137 245 DDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKH-SWKLLDGEALSNVLL 323 (448)
Q Consensus 245 ~~~~~~~~~~~~~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 323 (448)
++...+..+.+++..+++||+|||||||+||++||+++|||||||+|++.++ .+... + .+.....+.......
T Consensus 295 ~~~~at~~~~~~~~~viaHElaHqWfGnlVT~~~W~~lWLnEgfat~~e~~~--~~~~~----~~~~~~~~~~~~~~~~~ 368 (859)
T COG0308 295 DPETATDSDYENVEEVIAHELAHQWFGNLVTMKWWDDLWLNEGFATFREVLW--SEDLG----GRAWKRWEDFRTLRTSI 368 (859)
T ss_pred CcccchhHHHHHHHHHHHHHHhhhcccceeeccCHHHHHHhhhhHHHHHHHH--HHHhc----chHHHHHHHHHHHhhhH
Confidence 9888888888999999999999999999999999999999999999999999 88888 5 667667776666666
Q ss_pred hccccccCCCCcccccCCChhhhhhcccccccchhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q psy16137 324 IFPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAG 403 (448)
Q Consensus 324 ~~~~d~~~~~~p~~~~~~~~~~~~~~~~~~~Y~Kg~~vl~mL~~~iG~~~f~~~l~~yl~~~~~~~~~~~df~~~l~~~~ 403 (448)
++..|+....||+...+.+|.++++.|+.++|.||++|+|||+..+|++.|+++|+.|+++|.+++++++|||++++++
T Consensus 369 ~~~~D~~~~~hPi~~~~~~~~ei~~~fD~i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~- 447 (859)
T COG0308 369 ALAEDSLPSSHPIRVDVYDPKEINDFFDAIVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDA- 447 (859)
T ss_pred HHhhccccccCCcccCCCCccchhhhcchhhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCHHHHHHHHhcCCCCceEEEEEeecCCeeEEEEEC
Q psy16137 404 HRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYGKGGKIVRFSQ 448 (448)
Q Consensus 404 ~~~~~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~~~~~~v~i~Q 448 (448)
+|++++.+|..|+.|+|+|++.|..+++. ...+++.|
T Consensus 448 -------sg~dl~~~~~~w~~q~G~P~l~v~~~~~~-~~~l~~~q 484 (859)
T COG0308 448 -------SGKDLSAFFESWLSQAGYPVLTVSVRYDD-FFKLTQKQ 484 (859)
T ss_pred -------hCCcHHHHHHHHHhCCCCCceeeeeeccc-cEEEEEEE
Confidence 89999999999999999999999999885 12455544
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=4.4e-53 Score=436.24 Aligned_cols=301 Identities=20% Similarity=0.337 Sum_probs=230.1
Q ss_pred CCcccccCCccCccc-------ccCCCceeeecccccceeeecCCCEEEEEe----ecCCceEEEE--EeeccCCCCCCc
Q psy16137 101 SKPIWLPCDQQKSAG-------KQADQHDIISNEKMELREEMGESDWLIVNK----QMTALALTFR--QSNTSNPDLSRV 167 (448)
Q Consensus 101 ~~~~wl~~~d~p~~~-------~~p~~~~visn~~~~~~~~~~~~~~~~~~f----~ms~y~~a~~--~~~~~~~~~~~~ 167 (448)
.++.||||.|+|..+ ++| ++|++|+... ... .++..+++| |||+|++||+ +|... ..|.
T Consensus 134 ~AR~~fPC~D~P~~Katf~~~I~~P--~~av~sg~~~-~~~--~~~~~~~~F~~t~pmptYLia~avG~~~~~---~~g~ 205 (601)
T TIGR02411 134 HARSVIPCQDTPSVKSTYTAEVESP--LPVLMSGIPD-GET--SNDPGKYLFKQKVPIPAYLIALASGDLASA---PIGP 205 (601)
T ss_pred chheeeeecCCcccceEEEEEEeeC--cceeccCCcc-ccc--cCCCceEEEEeCCCcchhhheeeeccceec---ccCC
Confidence 466899999999876 477 8888766543 121 134456778 9999999999 66554 3477
Q ss_pred eEEEEEccchhhhhhhhcchhhHHHHH-HHHHHHHHHHHHhcCCCCCCCccEEEe-CCCCCCccccccchhcccceeeec
Q psy16137 168 QFRTWARRDVIDQVHILFDSQVDFAAE-AGPEFLNFFERYFNIRYPLPKQDMVAI-PDFSAGAMENWGLITYRESALLFD 245 (448)
Q Consensus 168 ~i~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~e~~~g~~yP~~k~~~v~~-p~~~~~~me~~gli~~~e~~ll~~ 245 (448)
++++|++|+..+. +++.+. .+.++++++|+++| |||++|+|+|++ |+|+.|||||||+ +|.+..++.+
T Consensus 206 ~~~v~~~p~~~~~--------~~~~~~~~~~~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~l-tf~~~~ll~~ 275 (601)
T TIGR02411 206 RSSVYSEPEQLEK--------CQYEFEHDTENFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPNL-TFATPTLIAG 275 (601)
T ss_pred ceEEEccchhHHH--------HHHHHHHhHHHHHHHHHHhCC-CCcCccceEEEecCcccccccccccc-eeeccccccC
Confidence 8999999998877 777777 89999999999877 999999999987 6899999999994 6777766654
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccccCCCCCcchhhhhhHHHHHHHhhc
Q psy16137 246 DVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIF 325 (448)
Q Consensus 246 ~~~~~~~~~~~~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (448)
. + ....++|||||||||||+||++||+|+|||||||+|+++++ ++..+|. ....+........+...+
T Consensus 276 d-------~-s~~~viaHElAHqWfGNlVT~~~W~d~WLnEGfaty~e~~~--~~~~~~e--~~~~~~~~~~~~~l~~~~ 343 (601)
T TIGR02411 276 D-------R-SNVDVIAHELAHSWSGNLVTNCSWEHFWLNEGWTVYLERRI--VGRLYGE--KTRHFSALIGWGELQESV 343 (601)
T ss_pred C-------h-hhhhhHHHHHHhhccCceeecCCchHHHHHhhHHHHHHHHH--HHHhcCc--HHHHHHHHHhHHHHHHHH
Confidence 2 1 23579999999999999999999999999999999999999 8888721 111121111222233222
Q ss_pred cccccCCCCcccccCCChh--hhhhcccccccchhhHHHHHHHHhhc-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q psy16137 326 PLDSLSSSHPVSVPIGNPS--EIAQIFDAISYKKGSFLIRMMNSFLS-GKVFQQGVSNYLNKYQYRNAEQDDLWESLTEA 402 (448)
Q Consensus 326 ~~d~~~~~~p~~~~~~~~~--~~~~~~~~~~Y~Kg~~vl~mL~~~iG-~~~f~~~l~~yl~~~~~~~~~~~df~~~l~~~ 402 (448)
.. +...+|+...+.+.. +..+.|+.+.|.||+++|+|||..|| ++.|+++||.|+++|++++++++||+++|.+.
T Consensus 344 ~~--~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~KGa~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~ 421 (601)
T TIGR02411 344 KT--LGEDPEYTKLVVDLKDNDPDDAFSSVPYEKGFNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEY 421 (601)
T ss_pred Hh--hcCCCCCCcccccCCCCChhhhccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 21 222334333322211 34578999999999999999999999 99999999999999999999999999999987
Q ss_pred cccCCCCCCCCCHHHH-HHHHhcCCCCceEEEEEe
Q psy16137 403 GHRSKVLPQNLTVKEI-MDSWTLQTGYPIVDVTRE 436 (448)
Q Consensus 403 ~~~~~~~~~~~~l~~~-~~~W~~~~g~P~l~v~~~ 436 (448)
..... .+.+++.+ |+.|++++|+|.+.+..+
T Consensus 422 ~~~~~---~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 422 FKDTG---KVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred hhhcc---ccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 54321 23456666 899999999999876533
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=2e-46 Score=374.30 Aligned_cols=243 Identities=42% Similarity=0.746 Sum_probs=212.4
Q ss_pred CCcccccCCccCccc-------ccCCCceeeecccccceeeecCCCEEEEEe----ecCCceEEEE--EeeccC-CCCCC
Q psy16137 101 SKPIWLPCDQQKSAG-------KQADQHDIISNEKMELREEMGESDWLIVNK----QMTALALTFR--QSNTSN-PDLSR 166 (448)
Q Consensus 101 ~~~~wl~~~d~p~~~-------~~p~~~~visn~~~~~~~~~~~~~~~~~~f----~ms~y~~a~~--~~~~~~-~~~~~ 166 (448)
.++.||||.|+|..+ ++|++++|+|||++. ......+|+++++| |||+|++||+ +|.... ...++
T Consensus 134 ~ar~~fPc~D~p~~ka~f~~~i~~p~~~~~~sng~~~-~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~ 212 (390)
T PF01433_consen 134 GARRWFPCFDEPSFKATFDLTITHPKDYTALSNGPLE-EEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSG 212 (390)
T ss_dssp TGGGTSSB--STTSEEEEEEEEEEETTTEEEESSEEE-EEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTE
T ss_pred ccceeeeeeccCCccceEEEeeeccccceeecccccc-ccccccccceeEeeecccccCchhhhhhcCcccccccccccc
Confidence 466899999999876 589999999999997 55555688999999 9999999999 665543 23346
Q ss_pred ceEEEEEccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCccEEEeCCCCCCccccccchhcccceeeecC
Q psy16137 167 VQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDD 246 (448)
Q Consensus 167 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~g~~yP~~k~~~v~~p~~~~~~me~~gli~~~e~~ll~~~ 246 (448)
++|++|++|+..+. ++++++.+.+++++|+++||+|||++|+++|++|++..+|||+||+|+++++.+++++
T Consensus 213 ~~v~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~ 284 (390)
T PF01433_consen 213 VPVRVYARPGDEEQ--------LQFALDIAPKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDP 284 (390)
T ss_dssp EEEEEEEECTCGGG--------HHHHHHHHHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-ST
T ss_pred cchheeehhhhHHH--------HHHHHHhhHHHHHHHHhhccccceecceeEEEEeccccccccccccccccccccccCc
Confidence 99999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccccCCCCCcchhhhhhHHHHHHHhhcc
Q psy16137 247 VRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFP 326 (448)
Q Consensus 247 ~~~~~~~~~~~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (448)
+.++..++..+..+||||+|||||||+|++++|+|+||+||||+|+++++ +++.+ +++++.+.+..+.++.++.
T Consensus 285 ~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~d~WL~Eg~a~y~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~ 358 (390)
T PF01433_consen 285 DISTIGDKQEIASLIAHELAHQWFGNLVTPKWWSDLWLNEGFATYLEYLI--LEKLF----GEWQMMELFLVQEMQRALR 358 (390)
T ss_dssp TTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGHHHHHHHHHHHHHHH--HHHHH----GHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhHHHHHHHHHHHHhccCCccccchhhhHHHHHHHHHHHHh--Hhhcc----CcccchhhhhhhhHHHHHH
Confidence 99999899999999999999999999999999999999999999999999 99999 7778888888889999999
Q ss_pred ccccCCCCcccccCCChhhhhhcccccccchh
Q psy16137 327 LDSLSSSHPVSVPIGNPSEIAQIFDAISYKKG 358 (448)
Q Consensus 327 ~d~~~~~~p~~~~~~~~~~~~~~~~~~~Y~Kg 358 (448)
.|.....+|+...+.++.++...|+.+.|.||
T Consensus 359 ~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 359 EDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp HHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred HhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 99999999999888888899999999999998
No 8
>KOG1047|consensus
Probab=100.00 E-value=1.9e-42 Score=332.82 Aligned_cols=297 Identities=22% Similarity=0.337 Sum_probs=229.0
Q ss_pred CcccccCCccCccc-------ccCCCceeeecccccceeeecCCCEEEEEe----ecCCceEEEE-EeeccCCCCCCceE
Q psy16137 102 KPIWLPCDQQKSAG-------KQADQHDIISNEKMELREEMGESDWLIVNK----QMTALALTFR-QSNTSNPDLSRVQF 169 (448)
Q Consensus 102 ~~~wl~~~d~p~~~-------~~p~~~~visn~~~~~~~~~~~~~~~~~~f----~ms~y~~a~~-~~~~~~~~~~~~~i 169 (448)
++..+||.|.|+.+ .+|.++.++.++... ......+|...+.| |++.|++||+ +-.+. ..-|.+-
T Consensus 140 aRsi~PC~DTPavK~ty~a~v~vp~~l~a~mSai~~-~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s--~eIgpRs 216 (613)
T KOG1047|consen 140 ARSIFPCQDTPAVKSTYTAEVEVPMGLTALMSAIPA-GEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLES--REIGPRS 216 (613)
T ss_pred HheeccccCCCcceeEEEEEEEcCCcceeeeecccc-ccCCCCCCcceEEEEeccCchhhhHHHhhccccc--cccCCcc
Confidence 45689999999876 478999988888664 23344556778888 9999999999 44443 4568888
Q ss_pred EEEEccchhhhhhhhcchhhHHHHH-HHHHHHHHHHHHhcCCCCCCCccEEEeC-CCCCCccccccchhcccceeeecCC
Q psy16137 170 RTWARRDVIDQVHILFDSQVDFAAE-AGPEFLNFFERYFNIRYPLPKQDMVAIP-DFSAGAMENWGLITYRESALLFDDV 247 (448)
Q Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~e~~~g~~yP~~k~~~v~~p-~~~~~~me~~gli~~~e~~ll~~~~ 247 (448)
+||+.|...+. +++-+. .+.++|..-|+.+| ||++.+||++++| +|++||||||.+.++... +|-.
T Consensus 217 ~VwaEp~~~~a--------~~~ef~~~~e~~L~~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaG-- 284 (613)
T KOG1047|consen 217 RVWAEPCLLDA--------CQEEFAGETEDFLKAAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAG-- 284 (613)
T ss_pred ceecchhhhHH--------HHHHHHhhhHHHHHHHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcC--
Confidence 99999998887 555554 89999999999999 9999999999995 899999999987655544 4332
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccccCCCCCcchhhhhhHHHHHHHhhccc
Q psy16137 248 RSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPL 327 (448)
Q Consensus 248 ~~~~~~~~~~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (448)
.+....+|||||||.|+||+||...|+++||||||+.|++.++ +..++|. +.-.+.....+..++.. .
T Consensus 285 ------Drsl~~vIaHEIAHSWtGNlVTN~sWehfWLNEGfTvylErrI--~g~~~g~--~~~~f~a~~gw~~L~~~--~ 352 (613)
T KOG1047|consen 285 ------DRSLVDVIAHEIAHSWTGNLVTNASWEHFWLNEGFTVYLERRI--VGRLYGE--AYRQFEALIGWRELRPS--M 352 (613)
T ss_pred ------CcchhhHHHHHhhhhhcccccccCccchhhhcccchhhhhhhh--hhhhcch--hHHHHHHhcChhhhhhH--H
Confidence 2234689999999999999999999999999999999999999 8888832 21122222233333332 2
Q ss_pred cccCCCCccccc-----CCChhhhhhcccccccchhhHHHHHHHHhhc-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q psy16137 328 DSLSSSHPVSVP-----IGNPSEIAQIFDAISYKKGSFLIRMMNSFLS-GKVFQQGVSNYLNKYQYRNAEQDDLWESLTE 401 (448)
Q Consensus 328 d~~~~~~p~~~~-----~~~~~~~~~~~~~~~Y~Kg~~vl~mL~~~iG-~~~f~~~l~~yl~~~~~~~~~~~df~~~l~~ 401 (448)
|.....++.... ..+|+ +.|+.+.|.||..+++.|++.+| ++.|...||.|+++|+++++++.||.+.|-+
T Consensus 353 d~~g~~~~~tkLv~kl~~~dPD---dafs~VpYeKG~~ll~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye 429 (613)
T KOG1047|consen 353 DLFGETSEFTKLVVKLENVDPD---DAFSQVPYEKGFALLFYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYE 429 (613)
T ss_pred HhcCCCcccchhhhhccCCChH---HhhhcCchhhhhHHHHHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHH
Confidence 333444444322 12444 68999999999999999999999 6779999999999999999999999999999
Q ss_pred hcccCCCCCCCCCH-H-HHHHHHhcCCCCceEE
Q psy16137 402 AGHRSKVLPQNLTV-K-EIMDSWTLQTGYPIVD 432 (448)
Q Consensus 402 ~~~~~~~~~~~~~l-~-~~~~~W~~~~g~P~l~ 432 (448)
..++.+. +++ . --++.|++.+|.|...
T Consensus 430 ~fpe~kk----~dil~~vd~~~Wl~~~G~Pp~~ 458 (613)
T KOG1047|consen 430 YFPELKK----KDILDEVDWDLWLNSPGMPPPK 458 (613)
T ss_pred hCcchhh----hhhhccccHHHHhcCCCCCCCC
Confidence 8876321 121 1 1389999999999754
No 9
>KOG1932|consensus
Probab=99.93 E-value=6.2e-25 Score=226.57 Aligned_cols=298 Identities=17% Similarity=0.280 Sum_probs=213.0
Q ss_pred CcccccCCccCccc-------ccCCCceeeecccccceeeec-CCCEEEEEe----ecCCceEEEE--EeeccCCCCCCc
Q psy16137 102 KPIWLPCDQQKSAG-------KQADQHDIISNEKMELREEMG-ESDWLIVNK----QMTALALTFR--QSNTSNPDLSRV 167 (448)
Q Consensus 102 ~~~wl~~~d~p~~~-------~~p~~~~visn~~~~~~~~~~-~~~~~~~~f----~ms~y~~a~~--~~~~~~~~~~~~ 167 (448)
++.|+||-|.+... +.|.+.+++++|.+. ..+.. +-+.++++| |+++..+||+ .|... ..+.++
T Consensus 185 ar~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl-~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~-~~P~~~ 262 (1180)
T KOG1932|consen 185 ARSWFPCVDSSYERCTWELEFTVPKNLVAVSCGELL-EQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSY-VEPSMI 262 (1180)
T ss_pred cceEEeecCCccccceEEEEEEecccceeccchhhh-heeecccccccEEEEEEeccCCccccceeecccccc-CCCccC
Confidence 56899999998664 689999999999886 34433 335667777 9999999999 66665 566799
Q ss_pred eEEEEEccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCccEEEeCCCCCCccccccchhcccceeeecCC
Q psy16137 168 QFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDV 247 (448)
Q Consensus 168 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~g~~yP~~k~~~v~~p~~~~~~me~~gli~~~e~~ll~~~~ 247 (448)
+|..||.|+.+.- ++...-.+.++++|||+.+|..|||+-+.+|++|.....-+.++.+.+++.+ +||+.+
T Consensus 263 ~i~~f~LP~~~~~--------v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~ 333 (1180)
T KOG1932|consen 263 DITHFCLPGLEPL--------VKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKN 333 (1180)
T ss_pred cceeEecCcchHH--------hhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHh
Confidence 9999999999988 8899999999999999999988999999999999877777777777776654 677765
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccccCCCCCcchhhhhhHHHHHHHhhccc
Q psy16137 248 RSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPL 327 (448)
Q Consensus 248 ~~~~~~~~~~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (448)
+ +.........++-.+|.||||.++++..|+|.||.+|+|.|+..++ +++.+|.++..+++. ...-++..+
T Consensus 334 i--IDq~~~tr~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~--~kk~lGNNEyry~lK-----k~~d~V~~~ 404 (1180)
T KOG1932|consen 334 I--IDQTFLTRRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLF--VKKFLGNNEYRYQLK-----KALDAVVDY 404 (1180)
T ss_pred h--hhHHHHHHHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHH--HHHHhCchHHHHHHH-----HHHHHHHHh
Confidence 4 3445555679999999999999999999999999999999999999 999995544333331 112222222
Q ss_pred ccc----CCCCcccccCC----Chh----------hhhhcccccccchhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCC
Q psy16137 328 DSL----SSSHPVSVPIG----NPS----------EIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRN 389 (448)
Q Consensus 328 d~~----~~~~p~~~~~~----~~~----------~~~~~~~~~~Y~Kg~~vl~mL~~~iG~~~f~~~l~~yl~~~~~~~ 389 (448)
|.. ..+.|+..... .+. ..+..|..-.-.|+..+.+|+++.+|.+-|.+.++..+.
T Consensus 405 d~~~g~i~l~~Pi~~s~k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~------ 478 (1180)
T KOG1932|consen 405 DVQKGAIYLTRPISPSMKFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLE------ 478 (1180)
T ss_pred hhccCceeeccCCCcchhhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH------
Confidence 321 11112221111 000 001111112224777777777777777776665554332
Q ss_pred CCHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHhcCCCCceEEEEEeecCCeeEE
Q psy16137 390 AEQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYGKGGKIV 444 (448)
Q Consensus 390 ~~~~df~~~l~~~~~~~~~~~~~~~l~~~~~~W~~~~g~P~l~v~~~~~~~~~~v 444 (448)
.+ +...++.||+.|++..|+|.+.+...++.+++.|
T Consensus 479 -----------~~--------~~~~~k~~~~~Wv~~~g~~~~r~~~~~N~k~~~I 514 (1180)
T KOG1932|consen 479 -----------LA--------SKMLLKSFFQTWVYGLGVPILRLGQRFNVKGKDI 514 (1180)
T ss_pred -----------hh--------hhhHHHHHHHHHHhccCCeeEEEEEEEeeccccc
Confidence 22 1112577889999999999999988887665333
No 10
>KOG1046|consensus
Probab=99.55 E-value=7.7e-15 Score=158.50 Aligned_cols=95 Identities=29% Similarity=0.596 Sum_probs=80.6
Q ss_pred CcccccCCCCCchHHHHHHHHhCCCCCCchhhhhccchhhhcccCceEEEEEEeecCCceEEEEeeeeeeeCCCCCCCCC
Q psy16137 1 MVIKFKNRSTKPGWMWDVFQKSAPMSPYLVTSIISTNYYLILQTGYPIVDVTREYGKGGKIVRFSQRRFLALPNLKKEDS 80 (448)
Q Consensus 1 ~l~~~~y~~~~~~dLw~~l~~~~~~~~~~v~~~m~~~~~w~~q~G~Pvv~v~~~~~~~~~~~~~~Q~rf~~~~~~~~~~~ 80 (448)
+|++|+|+|++++|||++|+.+. +.||+++|++ ||.|+|||||+|.++++ .++++|+||+..+. ..+.
T Consensus 442 yL~~~~y~na~~~DLw~~l~~~~---~~~v~~~M~~---Wt~Q~G~Pvv~V~~~~~----~~~l~Q~rf~~~~~--~~~~ 509 (882)
T KOG1046|consen 442 YLKKHQYSNAKTEDLWDALEEGS---GLDVSELMDT---WTKQMGYPVVTVERNGD----SLTLTQERFLSDPD--PSED 509 (882)
T ss_pred HHHHhccCCCCchhHHHHHhccC---CCCHHHHHhh---hhcCCCCceEEEEecCC----EEEEehhhhccCCC--cccc
Confidence 58899999999999999999444 7999999999 99999999999999852 68999999998765 4456
Q ss_pred CceeeeeeeeeccCCCCCCCCCcccccCCc
Q psy16137 81 SQCWWIPITLMTSKSADFSDSKPIWLPCDQ 110 (448)
Q Consensus 81 ~~~W~IPit~~~~~~~~f~~~~~~wl~~~d 110 (448)
.++|+||+++.+.+...+ ...|+.+..
T Consensus 510 ~~~w~iPl~~~~~~~~~~---~~~~~~~~~ 536 (882)
T KOG1046|consen 510 NYLWWIPLTYTTSGSGSV---PKFWLSSKS 536 (882)
T ss_pred CcccceeEEEEcCCCCcc---ceeeecCCC
Confidence 789999999999987654 235776554
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.43 E-value=4e-12 Score=123.83 Aligned_cols=218 Identities=15% Similarity=0.233 Sum_probs=147.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCccEEEe-CCCCCCccccccchhcccceeeecCCC-CCHHHHHHHHHHHHHHHH
Q psy16137 189 VDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAI-PDFSAGAMENWGLITYRESALLFDDVR-SSIHNEYSIANTIAHELA 266 (448)
Q Consensus 189 ~~~~~~~~~~~l~~~e~~~g~~yP~~k~~~v~~-p~~~~~~me~~gli~~~e~~ll~~~~~-~~~~~~~~~~~~laHEla 266 (448)
.+...+.++++++--.+.|| +-||.++.+++. -+-.+||||+-.-.. +.++.-. ++....+....+++||..
T Consensus 183 ~~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~-----l~~~r~~~~~~~ky~~~l~llsHEyf 256 (558)
T COG3975 183 KERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTA-----LIYDRFGFTDQDKYQDLLGLLSHEYF 256 (558)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceeccccc-----cccccccccchhHHHHHHHHHHHHHH
Confidence 57888899999999999999 799999988885 455678999864322 3333211 222224666789999999
Q ss_pred HHHhCCccCcccc-----------hhHHHhHHHHHHHHHhhccccccCCCCCcchhhhhhHH---HHHHHhhccccccCC
Q psy16137 267 HQWFGNLVTMKWW-----------TDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEA---LSNVLLIFPLDSLSS 332 (448)
Q Consensus 267 HqWfG~~vt~~~w-----------~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~ 332 (448)
|-|.+..+.|+.. .-+|+.|||++|+..++ .-... .--.+.|+ ...+.+... .....
T Consensus 257 H~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll--~lRsg------l~~~~~~l~~la~tl~~~~~-~~gRl 327 (558)
T COG3975 257 HAWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLL--ALRSG------LISLETYLNYLAKTLARYLN-TPGRL 327 (558)
T ss_pred HhccceeccccccCCccccccCCCcceeeecCchHHHHHHH--HHHhc------cCcHHHHHHHHHHHHHHHhc-CCcee
Confidence 9999999998732 35999999999999988 32221 11112332 111222111 11111
Q ss_pred CCccccc-------CCChhhhhhccccc--ccchhhHHHHHHHHhh-----cHHHHHHHHHHHHHHhCC--CCCCHHHHH
Q psy16137 333 SHPVSVP-------IGNPSEIAQIFDAI--SYKKGSFLIRMMNSFL-----SGKVFQQGVSNYLNKYQY--RNAEQDDLW 396 (448)
Q Consensus 333 ~~p~~~~-------~~~~~~~~~~~~~~--~Y~Kg~~vl~mL~~~i-----G~~~f~~~l~~yl~~~~~--~~~~~~df~ 396 (448)
..|+... ...++. ..-+.+ .|+||++|-.+|...| |+..+...||.+.+.+.. +.++++++.
T Consensus 328 ~~~laEsS~~awik~yr~d~--ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~ 405 (558)
T COG3975 328 RQSLAESSFDAWIKYYRPDE--NSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQ 405 (558)
T ss_pred cccccccccchhHHhhcccc--cccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHH
Confidence 1121111 111111 112223 3999999999988888 466788888888888765 778999999
Q ss_pred HHHHHhcccCCCCCCCCCHHHHHHHHhcCCCCceE
Q psy16137 397 ESLTEAGHRSKVLPQNLTVKEIMDSWTLQTGYPIV 431 (448)
Q Consensus 397 ~~l~~~~~~~~~~~~~~~l~~~~~~W~~~~g~P~l 431 (448)
..++++ +|.++.+||+..+++.--|.+
T Consensus 406 av~~~~--------tg~dl~~f~~~~i~~~~~~~l 432 (558)
T COG3975 406 AVLENV--------TGLDLATFFDEYIEGTEPPPL 432 (558)
T ss_pred HHHHhh--------ccccHHHHHHHHhhcCCCCCh
Confidence 999999 889999999999999876654
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.31 E-value=3.3e-12 Score=106.32 Aligned_cols=107 Identities=25% Similarity=0.434 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccccCCCCCcchhhhhhHHHHHHHhhccccccCCC
Q psy16137 254 EYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSS 333 (448)
Q Consensus 254 ~~~~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 333 (448)
......+++||++|+|++..++.......|++||+|+|++... -. . ....+...+..+.....
T Consensus 22 ~~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~~--~~-~--------------~~~~~~~~~~~~~~~~~ 84 (128)
T PF13485_consen 22 EDWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGRI--ED-E--------------FDEDLKQAIESGSLPPL 84 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcCc--cc-h--------------hHHHHHHHHHcCCCCCh
Confidence 3445589999999999999998766778999999999999543 11 1 11222222222222222
Q ss_pred CcccccCCChhhhhhcccccccchhhHHHHHHHHhhcHHHHHHHHHHH
Q psy16137 334 HPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNY 381 (448)
Q Consensus 334 ~p~~~~~~~~~~~~~~~~~~~Y~Kg~~vl~mL~~~iG~~~f~~~l~~y 381 (448)
.++...... ...+....|.+|++++++|+...|++.|++.|++|
T Consensus 85 ~~l~~~~~~----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 85 EPLNSSFDF----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred HHHhccccc----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 222221111 23455678999999999999999999999999875
No 13
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=98.58 E-value=9.8e-08 Score=102.88 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=62.7
Q ss_pred CcccccCCCCCchHHHHHHHHhCCCCCCchhhhhccchhhhcccCceEEEEEEeecCCceE--EEEeeeeeeeCCCCCCC
Q psy16137 1 MVIKFKNRSTKPGWMWDVFQKSAPMSPYLVTSIISTNYYLILQTGYPIVDVTREYGKGGKI--VRFSQRRFLALPNLKKE 78 (448)
Q Consensus 1 ~l~~~~y~~~~~~dLw~~l~~~~~~~~~~v~~~m~~~~~w~~q~G~Pvv~v~~~~~~~~~~--~~~~Q~rf~~~~~~~~~ 78 (448)
+|++|+|+|++++|||+++++++ +.++..++ + |+.|+|||+|+|+++|+.+++. ++++|.+. .+. ..
T Consensus 399 Yl~r~~~~~at~~Df~~ale~as---g~dL~~f~-~---W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q~~~--~~~--~~ 467 (863)
T TIGR02414 399 YFSRHDGQAVTCEDFVAAMEDAS---GRDLNQFR-R---WYSQAGTPVLEVKENYDAAKKTYTLTVRQSTP--PTP--GQ 467 (863)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHh---CCCHHHHH-H---HHcCCCCceeEEEEEEcCCCCEEEEEEEEeCC--CCC--CC
Confidence 47899999999999999999998 77898874 8 9999999999999998765443 45555532 111 11
Q ss_pred CCCceeeeeeeeecc
Q psy16137 79 DSSQCWWIPITLMTS 93 (448)
Q Consensus 79 ~~~~~W~IPit~~~~ 93 (448)
.....|+||+.+.--
T Consensus 468 ~~~~~~~iPl~i~l~ 482 (863)
T TIGR02414 468 TEKKPLHIPIAVGLL 482 (863)
T ss_pred CcCCceEEEEEEEEE
Confidence 234579999997543
No 14
>PRK14015 pepN aminopeptidase N; Provisional
Probab=98.46 E-value=3.7e-07 Score=98.75 Aligned_cols=81 Identities=15% Similarity=0.145 Sum_probs=62.3
Q ss_pred CcccccCCCCCchHHHHHHHHhCCCCCCchhhhhccchhhhcccCceEEEEEEeecCCce--EEEEeeeeeeeCCCCCCC
Q psy16137 1 MVIKFKNRSTKPGWMWDVFQKSAPMSPYLVTSIISTNYYLILQTGYPIVDVTREYGKGGK--IVRFSQRRFLALPNLKKE 78 (448)
Q Consensus 1 ~l~~~~y~~~~~~dLw~~l~~~~~~~~~~v~~~m~~~~~w~~q~G~Pvv~v~~~~~~~~~--~~~~~Q~rf~~~~~~~~~ 78 (448)
+|++|+|+|++++|||+++++++ +.++..++ . |+.|+|+|+|+|+++++.+++ .++++|... .+ ...
T Consensus 412 Yl~~~~~~~at~~Df~~ale~as---g~DL~~f~-~---W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q~~~--~~--~~~ 480 (875)
T PRK14015 412 YFERHDGQAVTCEDFVAAMEDAS---GRDLSQFR-R---WYSQAGTPRVTVSDEYDAAAGTYTLTLSQSTP--PT--PGQ 480 (875)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHh---CCCHHHHH-H---HHcCCCCCeEEEEEEEcCCCCEEEEEEEEeCC--CC--CCC
Confidence 47899999999999999999998 78999986 8 999999999999999864333 355566532 11 112
Q ss_pred CCCceeeeeeeeec
Q psy16137 79 DSSQCWWIPITLMT 92 (448)
Q Consensus 79 ~~~~~W~IPit~~~ 92 (448)
.....|.||+.+..
T Consensus 481 ~~~~~~~iPl~i~l 494 (875)
T PRK14015 481 PEKQPLHIPVAIGL 494 (875)
T ss_pred CCCceEEEEEEEEE
Confidence 23467999999754
No 15
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=98.46 E-value=2.9e-07 Score=100.09 Aligned_cols=78 Identities=10% Similarity=0.053 Sum_probs=59.9
Q ss_pred CcccccCCCCCchHHHHHHHHhCCCCCCchhhhhccchhhhcccCceEEEEEEeecCCceEEEEeeeeeeeCCCCCCCCC
Q psy16137 1 MVIKFKNRSTKPGWMWDVFQKSAPMSPYLVTSIISTNYYLILQTGYPIVDVTREYGKGGKIVRFSQRRFLALPNLKKEDS 80 (448)
Q Consensus 1 ~l~~~~y~~~~~~dLw~~l~~~~~~~~~~v~~~m~~~~~w~~q~G~Pvv~v~~~~~~~~~~~~~~Q~rf~~~~~~~~~~~ 80 (448)
+|++|+|+|++++|||++|++++ +.+++.+|++ |+.|+|||+|+|+++++++ .++ + .+.... . .
T Consensus 405 Yl~~~~~~nat~~Dl~~~l~~~s---g~dl~~~~~~---W~~~~G~P~l~v~~~~~~~--~~~-~--~~~~~~---~-~- 468 (831)
T TIGR02412 405 YFKRHAFGNATLDDLIDSLAKAS---GRDLSAWSDA---WLETAGVNTLTPEITTDGG--VVS-A--LYPESS---G-P- 468 (831)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHh---CCCHHHHHHH---HHcCCCCceEEEEEEECCC--eEE-E--EEEecC---C-C-
Confidence 57899999999999999999998 7899999999 9999999999999987542 343 1 122211 1 1
Q ss_pred CceeeeeeeeeccC
Q psy16137 81 SQCWWIPITLMTSK 94 (448)
Q Consensus 81 ~~~W~IPit~~~~~ 94 (448)
...|+||+++.+..
T Consensus 469 ~~~~~ip~~~~~~~ 482 (831)
T TIGR02412 469 PRPHRIAIGLYDLD 482 (831)
T ss_pred CCCeeEEEeeeecC
Confidence 14589999986543
No 16
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=98.44 E-value=2.2e-07 Score=101.03 Aligned_cols=81 Identities=15% Similarity=0.416 Sum_probs=69.3
Q ss_pred CcccccCCCCCchHHHHHHHHhCCCCCCchhhhhccchhhhcccCceEEEEEEeecCCceEEEEeeeeeeeCCCCCCCCC
Q psy16137 1 MVIKFKNRSTKPGWMWDVFQKSAPMSPYLVTSIISTNYYLILQTGYPIVDVTREYGKGGKIVRFSQRRFLALPNLKKEDS 80 (448)
Q Consensus 1 ~l~~~~y~~~~~~dLw~~l~~~~~~~~~~v~~~m~~~~~w~~q~G~Pvv~v~~~~~~~~~~~~~~Q~rf~~~~~~~~~~~ 80 (448)
++++|+|+|++++|||+++.+++ +.++..+|.+ |+.|+|||+|.|...++. .++++|++|...+ ...
T Consensus 426 yf~~h~~~~~~~~Dl~~a~~~~s---g~dl~~~~~~---w~~q~G~P~l~v~~~~~~---~~~l~~~q~~~~~----~~~ 492 (859)
T COG0308 426 YFKRHAGGNATTMDLWKALEDAS---GKDLSAFFES---WLSQAGYPVLTVSVRYDD---FFKLTQKQFTPPG----QEE 492 (859)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHh---CCcHHHHHHH---HHhCCCCCceeeeeeccc---cEEEEEEEeccCC----Ccc
Confidence 46899999999999999999999 7899999999 999999999999988642 4789999999865 244
Q ss_pred CceeeeeeeeeccC
Q psy16137 81 SQCWWIPITLMTSK 94 (448)
Q Consensus 81 ~~~W~IPit~~~~~ 94 (448)
...|.||+.+....
T Consensus 493 ~~~~~iPl~~~~~~ 506 (859)
T COG0308 493 KRPWPIPLAIKLLD 506 (859)
T ss_pred CceeeeccEEEecC
Confidence 56899999876553
No 17
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=98.01 E-value=0.00044 Score=66.77 Aligned_cols=146 Identities=14% Similarity=0.122 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHhC--CccCcc--cchhHHHhHHHHHHHHHhhccccccCCCCCcchhhhhhHHHHHHHhhccccc
Q psy16137 254 EYSIANTIAHELAHQWFG--NLVTMK--WWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDS 329 (448)
Q Consensus 254 ~~~~~~~laHElaHqWfG--~~vt~~--~w~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 329 (448)
...+..+||||+-|+--- +.|... .-.|.||+||+|.-.+..+ ......+..+- ...++ ... .....
T Consensus 136 ~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE~lS~~aEdl~--s~~~~~~~n~i--~d~R~--~~y---~~~~~ 206 (366)
T PF10460_consen 136 PDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNEMLSMSAEDLY--SSKIDPGYNNI--RDSRI--PYY---NNYTS 206 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH--hcCCCcccCcc--ccccH--HHH---hhccc
Confidence 445678999999998532 223322 2358999999999999998 55553111110 00111 111 11111
Q ss_pred cCCCCcccccCCChhhhhhcccccccchhhHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCCC
Q psy16137 330 LSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRSKVL 409 (448)
Q Consensus 330 ~~~~~p~~~~~~~~~~~~~~~~~~~Y~Kg~~vl~mL~~~iG~~~f~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~~~~ 409 (448)
....+.+... ... ......|....+++.-|....|.+.+++.|.. ....+..+.+..+.+.++
T Consensus 207 ~~~~~~l~~w-~~~-----g~~l~sYs~s~~Fg~~L~rQ~G~~~~~~~l~~------~~~tds~avl~aa~~~~~----- 269 (366)
T PF10460_consen 207 GNYNCSLTAW-SSF-----GDSLASYSSSYSFGAYLYRQYGGDFYKKLLTN------SSSTDSEAVLDAAIKQAG----- 269 (366)
T ss_pred cCCCcceeec-CCC-----ccccccchhHHHHHHHHHHHcChHHHHHHHhc------CCCCcHHHHHHHHHHhhc-----
Confidence 1222222221 111 11235699999999999999999998887762 234677777777665532
Q ss_pred CCCCCHHHHHHHHhcCC
Q psy16137 410 PQNLTVKEIMDSWTLQT 426 (448)
Q Consensus 410 ~~~~~l~~~~~~W~~~~ 426 (448)
.+.++.++|.+|..--
T Consensus 270 -~~~sf~~~l~~w~~A~ 285 (366)
T PF10460_consen 270 -PGNSFGELLRRWGVAL 285 (366)
T ss_pred -CCCCHHHHHHHHHHHH
Confidence 4667999999997655
No 18
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.45 E-value=3.1e-05 Score=62.86 Aligned_cols=40 Identities=28% Similarity=0.514 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCccCcccc-----------hhHHHhHHHHHHHHHhhc
Q psy16137 258 ANTIAHELAHQWFGNLVTMKWW-----------TDLWLNEGFATYMAAQAL 297 (448)
Q Consensus 258 ~~~laHElaHqWfG~~vt~~~w-----------~d~Wl~EG~a~y~~~~~~ 297 (448)
..+++||+.|.|.+..+.|+.- +.+|+-||+++|++.+++
T Consensus 5 l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l 55 (122)
T PF05299_consen 5 LGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLL 55 (122)
T ss_pred hhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHH
Confidence 4689999999999888887643 358999999999999983
No 19
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=96.78 E-value=0.029 Score=50.28 Aligned_cols=171 Identities=17% Similarity=0.199 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-CCCCCccEEEe--CCCCCCccccc------cchhcccceeeecCCCCCHHHHHHHHHH
Q psy16137 190 DFAAEAGPEFLNFFERYFNIR-YPLPKQDMVAI--PDFSAGAMENW------GLITYRESALLFDDVRSSIHNEYSIANT 260 (448)
Q Consensus 190 ~~~~~~~~~~l~~~e~~~g~~-yP~~k~~~v~~--p~~~~~~me~~------gli~~~e~~ll~~~~~~~~~~~~~~~~~ 260 (448)
..+...+..+..+..+.|-.+ .+-+..+-|.+ .++ +|.... .-|.++...+-..+. ....+..+..+
T Consensus 24 ~~a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~--~gVA~t~gd~~~~~I~~S~~~i~~~~~--~~~~~~Ei~Gv 99 (205)
T PF04450_consen 24 PDAEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDM--DGVAYTSGDDDHKEIHFSARYIAKYPA--DGDVRDEIIGV 99 (205)
T ss_pred cCHHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECC--CeeEEEecCCCccEEEEeHHHHhhccc--ccchHHHHHHH
Confidence 345556666777777777533 22233333332 333 222222 234444433311111 12234667899
Q ss_pred HHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccccCCCCCcchhhhhhHHHHHHHhhccccccCCCCcccccC
Q psy16137 261 IAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPI 340 (448)
Q Consensus 261 laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 340 (448)
|.||++|-|=.+--... --||.||+|.|+..++ |..++.|.. |...
T Consensus 100 l~HE~~H~~Q~~~~~~~---P~~liEGIADyVRl~a-------G~~~~~w~~----------------------p~~~-- 145 (205)
T PF04450_consen 100 LYHEMVHCWQWDGRGTA---PGGLIEGIADYVRLKA-------GYAPPHWKR----------------------PGGG-- 145 (205)
T ss_pred HHHHHHHHhhcCCCCCC---ChhheecHHHHHHHHc-------CCCCccccC----------------------CCCC--
Confidence 99999997755543322 3599999999999886 333232211 1000
Q ss_pred CChhhhhhcccccccchhhHHHHHHHH-hhcHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcccCCCCCCCCCHHHHH
Q psy16137 341 GNPSEIAQIFDAISYKKGSFLIRMMNS-FLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRSKVLPQNLTVKEIM 419 (448)
Q Consensus 341 ~~~~~~~~~~~~~~Y~Kg~~vl~mL~~-~iG~~~f~~~l~~yl~~~~~~~~~~~df~~~l~~~~~~~~~~~~~~~l~~~~ 419 (448)
..++ -.|.-.+.+|.-|+. ..|+.. -+-|.+=+++..+ +.+++|+.+ .|+++++++
T Consensus 146 -------~~wd-~gY~~TA~FL~wle~~~~~~gf-V~~LN~~m~~~~y---~~~~~~~~l-----------~G~~v~~LW 202 (205)
T PF04450_consen 146 -------DSWD-DGYRTTARFLDWLEDNRYGKGF-VRRLNEAMRRDKY---SSDDFWKEL-----------LGKPVDELW 202 (205)
T ss_pred -------CCcc-cccHHHHHHHHHHHhcccCccH-HHHHHHHHhhCCC---CcHhHHHHH-----------HCcCHHHHH
Confidence 0111 357788889999999 666444 3334444444433 567776665 566788877
Q ss_pred HH
Q psy16137 420 DS 421 (448)
Q Consensus 420 ~~ 421 (448)
+.
T Consensus 203 ~e 204 (205)
T PF04450_consen 203 AE 204 (205)
T ss_pred hh
Confidence 64
No 20
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=96.31 E-value=0.0023 Score=52.52 Aligned_cols=38 Identities=37% Similarity=0.380 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCccCcc--cchhHHHhHHHHHHHHHhh
Q psy16137 259 NTIAHELAHQWFGNLVTMK--WWTDLWLNEGFATYMAAQA 296 (448)
Q Consensus 259 ~~laHElaHqWfG~~vt~~--~w~d~Wl~EG~a~y~~~~~ 296 (448)
.+++||.+||=.-|.=-.. .-.-.||.||||+|++..-
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~ 42 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPG 42 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCc
Confidence 5899999999865532221 1123899999999999766
No 21
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=95.97 E-value=0.0022 Score=67.37 Aligned_cols=49 Identities=16% Similarity=0.134 Sum_probs=39.6
Q ss_pred CcccccCCCCCchHHHHHHHHhCCCC--CCchhhh-hccchhhhcccCceEEEEE
Q psy16137 1 MVIKFKNRSTKPGWMWDVFQKSAPMS--PYLVTSI-ISTNYYLILQTGYPIVDVT 52 (448)
Q Consensus 1 ~l~~~~y~~~~~~dLw~~l~~~~~~~--~~~v~~~-m~~~~~w~~q~G~Pvv~v~ 52 (448)
+|++|+|+|++++|||++|.++.... ..++..+ |+. |+.|+|+|++++.
T Consensus 400 Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~---Wl~~~G~P~~~~~ 451 (601)
T TIGR02411 400 YFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDT---WLYSPGLPPVKPN 451 (601)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHH---HhcCCCCCCcCCC
Confidence 47899999999999999999875332 1345555 899 9999999998875
No 22
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=95.40 E-value=0.1 Score=46.58 Aligned_cols=94 Identities=20% Similarity=0.136 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCccEEEeCCCCCC-----ccccccchhcccceeee-cCCCCCHHHHHHHHHHHHHHHHHHH
Q psy16137 196 GPEFLNFFERYFNIRYPLPKQDMVAIPDFSAG-----AMENWGLITYRESALLF-DDVRSSIHNEYSIANTIAHELAHQW 269 (448)
Q Consensus 196 ~~~~l~~~e~~~g~~yP~~k~~~v~~p~~~~~-----~me~~gli~~~e~~ll~-~~~~~~~~~~~~~~~~laHElaHqW 269 (448)
+.+.+.-..+.| |-+.+++.++|.-+.+ .+...|...+....+++ -+.. .....+..++|||+.|.+
T Consensus 5 i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~~---~~~~~l~~~iaHE~hH~~ 77 (195)
T PF10026_consen 5 IEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPND---YSLEELPALIAHEYHHNC 77 (195)
T ss_pred HHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCCc---ccHHHHHHHHHHHHHHHH
Confidence 344444444444 4457777766533222 22233444555554544 2322 234477889999999986
Q ss_pred hCCccC----cccchhHHHhHHHHHHHHHhh
Q psy16137 270 FGNLVT----MKWWTDLWLNEGFATYMAAQA 296 (448)
Q Consensus 270 fG~~vt----~~~w~d~Wl~EG~a~y~~~~~ 296 (448)
--..+. ...--|.-+.||+|.+++..+
T Consensus 78 r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~ 108 (195)
T PF10026_consen 78 RYEQIGWDPEDTTLLDSLIMEGLAEYFAEEL 108 (195)
T ss_pred HHhccCCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence 433332 123447889999999999887
No 23
>PRK04860 hypothetical protein; Provisional
Probab=91.36 E-value=0.41 Score=41.08 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCccEEEeCCCCCCccccccchhcccceeeecCCCCCHHHHHHHHHHHHHHHHHHH
Q psy16137 191 FAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQW 269 (448)
Q Consensus 191 ~~~~~~~~~l~~~e~~~g~~yP~~k~~~v~~p~~~~~~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~laHElaHqW 269 (448)
.+...+...+..-+++||.|+|-+++.+=. ....+|+. ...+..+-++|..-.......+..+|.||+||.|
T Consensus 4 ~~~~~~~~~~~~a~~~f~~~f~~p~~~f~~--R~rtaG~~-----~l~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 4 AVMRRLRECLAQANLYFKRTFPEPKVSYTQ--RGTSAGTA-----WLQSNEIRLNPVLLLENQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCEEEEee--cchhhcch-----hHhcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHH
Confidence 344556677777888999888776654422 12223332 2223333333332222245567789999999987
No 24
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=85.75 E-value=0.67 Score=44.50 Aligned_cols=39 Identities=41% Similarity=0.450 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccc
Q psy16137 255 YSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRY 301 (448)
Q Consensus 255 ~~~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~ 301 (448)
..++.+|.||+|||=+. | -+|.=+||+||++.+... ++.
T Consensus 163 ~~LA~LIfHELaHq~~Y--v----~~dt~FNEsfAtfVe~~G--~~~ 201 (337)
T PF10023_consen 163 GELARLIFHELAHQTLY--V----KGDTAFNESFATFVEREG--ARR 201 (337)
T ss_pred hHHHHHHHHHHhhceee--c----CCCchhhHHHHHHHHHHH--HHH
Confidence 36789999999999322 1 236779999999999887 544
No 25
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=85.41 E-value=1.1 Score=37.91 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=31.6
Q ss_pred HHhcCCCCCCCccEEEeCCCCCCccccccchhcccceeeecCCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy16137 205 RYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFG 271 (448)
Q Consensus 205 ~~~g~~yP~~k~~~v~~p~~~~~~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~laHElaHqWfG 271 (448)
.+|+-++|-++ +..-.... ..+|.-......+.+++..........+..+|.|||||.+..
T Consensus 13 ~~F~~~l~~~~--i~w~~r~~----~~~G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 13 RVFGRKLPHPK--VVWNKRLR----KTGGRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHCCCCCCCE--EEEehhhh----hhhHHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHHH
Confidence 78886777552 22211111 123333333444444433322122346678999999999864
No 26
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=84.88 E-value=0.74 Score=42.03 Aligned_cols=41 Identities=37% Similarity=0.351 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccc
Q psy16137 253 NEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRY 301 (448)
Q Consensus 253 ~~~~~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~ 301 (448)
+...++.+|-||+|||=+.-- +|.=+||+||+..+... +++
T Consensus 193 dd~~lA~LIFHELAHQk~Y~~------~DtAFNEsFAtaVEt~G--vr~ 233 (376)
T COG4324 193 DDTYLASLIFHELAHQKIYVN------NDTAFNESFATAVETSG--VRK 233 (376)
T ss_pred ChHHHHHHHHHHHhhheEeec------CcchHhHHHHHHHHHHh--HHH
Confidence 345678999999999965321 36678999999999776 544
No 27
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=82.78 E-value=3.3 Score=37.07 Aligned_cols=72 Identities=24% Similarity=0.251 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCccEEEeCCCCCCccccccchhcccceeeecCCCCCHHHHHHHHHHHHHHHHHHH
Q psy16137 190 DFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQW 269 (448)
Q Consensus 190 ~~~~~~~~~~l~~~e~~~g~~yP~~k~~~v~~p~~~~~~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~laHElaHqW 269 (448)
+.+.......+..++..+|.+ .+++.+=-.-. ..|....-|.|+++-..+.+++. -+..+++||+||--
T Consensus 108 ~~~~~~l~~~~~~~~~~~~~~--~~~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~~--------~idYVvvHEL~Hl~ 176 (205)
T PF01863_consen 108 KQAKEYLPERLKKYAKKLGLP--PPKIKIRDMKS-RWGSCSSKGNITLNWRLVMAPPE--------VIDYVVVHELCHLR 176 (205)
T ss_pred HHHHHHHHHHHHHHHHHcCCC--cceEEEeehhh-ccccCCCCCcEEeecccccCCcc--------HHHHHHHHHHHHhc
Confidence 455566777888888888864 34444333222 24544555677777665544432 45679999999987
Q ss_pred hCC
Q psy16137 270 FGN 272 (448)
Q Consensus 270 fG~ 272 (448)
.-|
T Consensus 177 ~~n 179 (205)
T PF01863_consen 177 HPN 179 (205)
T ss_pred cCC
Confidence 544
No 28
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=81.15 E-value=1.7 Score=36.95 Aligned_cols=75 Identities=17% Similarity=0.277 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCC--ccEEEeCCCCCCccccccchhcccceeeecCCCCCH-HHHHHHHHHHHHHH
Q psy16137 189 VDFAAEAGPEFLNFFERYFNIRYPLPK--QDMVAIPDFSAGAMENWGLITYRESALLFDDVRSSI-HNEYSIANTIAHEL 265 (448)
Q Consensus 189 ~~~~~~~~~~~l~~~e~~~g~~yP~~k--~~~v~~p~~~~~~me~~gli~~~e~~ll~~~~~~~~-~~~~~~~~~laHEl 265 (448)
+..+...+.++.+||++.|| .-++.. ..++..-.++. ...|+ ....+.+.|.+..... ........++||||
T Consensus 69 ~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~-~~~NA---fW~g~~m~yGdG~~~~f~~~~~~lDVvaHEl 143 (150)
T PF01447_consen 69 AVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGK-NYNNA---FWNGSQMVYGDGDGQIFKPFASSLDVVAHEL 143 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESS-STT-E---EE-SSSEEEE---SSSBS-GGG-HHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCC-CccCc---cccCCEEEEECCCCcccccCccccceeeecc
Confidence 45666778999999999999 666653 33443322211 11111 1112334444332201 11111246999999
Q ss_pred HHH
Q psy16137 266 AHQ 268 (448)
Q Consensus 266 aHq 268 (448)
+|-
T Consensus 144 tHG 146 (150)
T PF01447_consen 144 THG 146 (150)
T ss_dssp HHH
T ss_pred ccc
Confidence 996
No 29
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=74.84 E-value=4.2 Score=36.11 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccc
Q psy16137 258 ANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRY 301 (448)
Q Consensus 258 ~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~ 301 (448)
..++|||+.|-|.-- .--.--+..+-||+++-+++.+ ++.
T Consensus 94 gsiLAHE~mHa~Lrl--~g~~~L~~~vEEGiCqvla~~w--L~~ 133 (212)
T PF12315_consen 94 GSILAHELMHAWLRL--NGFPNLSPEVEEGICQVLAYLW--LES 133 (212)
T ss_pred hhHHHHHHHHHHhcc--cCCCCCChHHHHHHHHHHHHHH--Hhh
Confidence 469999999999622 1111126799999999999999 544
No 30
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=74.38 E-value=11 Score=32.04 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q psy16137 253 NEYSIANTIAHELAHQWFGN 272 (448)
Q Consensus 253 ~~~~~~~~laHElaHqWfG~ 272 (448)
....+..+|.|||+|.|...
T Consensus 56 ~~~~~~~tL~HEm~H~~~~~ 75 (157)
T PF10263_consen 56 PEEELIDTLLHEMAHAAAYV 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 35677899999999999743
No 31
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=73.98 E-value=1.1e+02 Score=33.44 Aligned_cols=218 Identities=11% Similarity=0.141 Sum_probs=109.3
Q ss_pred CCceEEEEEccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHhcCCC-C-------CCCccEEEeCCCCCCccccccchh
Q psy16137 165 SRVQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRY-P-------LPKQDMVAIPDFSAGAMENWGLIT 236 (448)
Q Consensus 165 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~g~~y-P-------~~k~~~v~~p~~~~~~me~~gli~ 236 (448)
.+-.|.+..||...+.+..--..++....+.=..++++|.++.|... | +.+=-++=....+.|| .-
T Consensus 141 e~~~i~lLVP~~Dk~~l~~~~~~~l~~L~~~Y~~i~~~Yd~l~Gl~~~~~~~~~~n~~~kYF~KAD~~G~G~------AY 214 (775)
T PF03272_consen 141 ELDYIQLLVPPADKPNLNNKDFKSLDELIDFYNDIFKFYDDLTGLSDDPSDPVDKNFNNKYFAKADKSGPGA------AY 214 (775)
T ss_pred ECCEEEEEeCcchHHHHhhhcccCHHHHHHHHHHHHHHHHhhhCCCCCCCcccccccccceEEEecCCCCCC------cc
Confidence 35567888887766652210123366777778889999999999422 1 1111122222222222 12
Q ss_pred cccceeeecCCCCCHHHHHHH-----HHHHHHHHHHHHhCCccCcc-cchhHHHhHHHHHHHHHhhccccccCCCCCcch
Q psy16137 237 YRESALLFDDVRSSIHNEYSI-----ANTIAHELAHQWFGNLVTMK-WWTDLWLNEGFATYMAAQALNDRYNRPGSKHSW 310 (448)
Q Consensus 237 ~~e~~ll~~~~~~~~~~~~~~-----~~~laHElaHqWfG~~vt~~-~w~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~~~ 310 (448)
|+...+. ....+.. ..+ .-.+-|||+|.+=+..+... .+.+.| +-=+|.++++..++.++.. ...|
T Consensus 215 Y~~~w~a--~ss~s~~--~~L~~~~~nW~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~---~~~w 286 (775)
T PF03272_consen 215 YGSNWTA--QSSSSLS--FYLNPSPTNWGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQ---TDGW 286 (775)
T ss_pred cccccee--cCchhHH--HHhCCCCCCchhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhh---hccc
Confidence 2222111 1111111 111 23789999999988877333 455777 5667888887772211111 0112
Q ss_pred hh--hhhH-HHHHHHhhccccccCCCCcccccCCChhhhhhcccccccchhhHHHHHHHHhhcHHHHHHHHHHHHHHhCC
Q psy16137 311 KL--LDGE-ALSNVLLIFPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQY 387 (448)
Q Consensus 311 ~~--~~~~-~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~~~~Y~Kg~~vl~mL~~~iG~~~f~~~l~~yl~~~~~ 387 (448)
-+ .++. ....+...+. ...|.. +.+ .-.|=.++..|+...-|++.|++.-+.|-+.. .
T Consensus 287 ly~~G~r~~~e~~i~~~i~-----~~~~~~----~w~---------~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~~-~ 347 (775)
T PF03272_consen 287 LYDYGQRERVEREIIALID-----NNKPFD----SWD---------LRERLIFLTWLMNTKAGKDAFTEMNQEYRQLN-T 347 (775)
T ss_pred eecCCchHHHHHHHHHHHh-----cCCCcc----ccc---------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc-c
Confidence 11 0111 1111111111 111211 111 12455556668888999999998888777652 2
Q ss_pred CCCC--HHHHHHHHHHhcccCCCCCCCCCHHHHHHHH
Q psy16137 388 RNAE--QDDLWESLTEAGHRSKVLPQNLTVKEIMDSW 422 (448)
Q Consensus 388 ~~~~--~~df~~~l~~~~~~~~~~~~~~~l~~~~~~W 422 (448)
.... .-.+++.+.... ++.|+..+++-|
T Consensus 348 ~~~~~~~~~i~d~l~~~~-------~~~D~~p~~~l~ 377 (775)
T PF03272_consen 348 NGFNPNDHQIFDWLASLY-------SGYDFTPYFQLV 377 (775)
T ss_pred CCCCcccccHHHHHHHhh-------cCCchHhHHHHh
Confidence 2222 223334444442 466888999888
No 32
>COG2719 SpoVR Uncharacterized conserved protein [Function unknown]
Probab=73.76 E-value=35 Score=33.93 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=41.8
Q ss_pred HHhHHHHHHHHHhhccccccCCCCCcchhhhhhHHHHHHHhhccccccCCCCcccccCCChhhhhhcccc-cccchhhHH
Q psy16137 283 WLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSEIAQIFDA-ISYKKGSFL 361 (448)
Q Consensus 283 Wl~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~~-~~Y~Kg~~v 361 (448)
-||||+|+|-.+.+ +..++ .+.+..+.++++-+++.- ......|... | .|+. ..|.-|..+
T Consensus 269 VMNEGWAtfWHyti--ln~ly----dE~~~~~~~~lEfL~~h~---~Vv~qp~~~~----p-----~ys~iNPYyLGf~m 330 (495)
T COG2719 269 VMNEGWATFWHYTI--LNHLY----DEGKLTERAMLEFLKSHT---NVVFQPPYNS----P-----SYSGINPYYLGFAM 330 (495)
T ss_pred HhhhhHHHHHHHHH--HHhhh----hhcccChHHHHHHHHhcC---CeeecCCCCC----c-----cccCCChHHHhHHH
Confidence 69999999999999 88777 555666677777665421 1111222222 1 2222 357888888
Q ss_pred HHHH
Q psy16137 362 IRMM 365 (448)
Q Consensus 362 l~mL 365 (448)
+.-+
T Consensus 331 ~~DI 334 (495)
T COG2719 331 FQDI 334 (495)
T ss_pred HHHH
Confidence 8888
No 33
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=72.44 E-value=2.5 Score=40.86 Aligned_cols=29 Identities=48% Similarity=0.626 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhh
Q psy16137 256 SIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQA 296 (448)
Q Consensus 256 ~~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~ 296 (448)
..-.+++||+|||= | ...|.=|+|++++.
T Consensus 195 ~~P~T~~HElAHq~-G-----------~a~E~EANFiayLa 223 (318)
T PF12725_consen 195 SLPFTICHELAHQL-G-----------FASEDEANFIAYLA 223 (318)
T ss_pred cccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHH
Confidence 34569999999994 2 34888899999998
No 34
>PRK04351 hypothetical protein; Provisional
Probab=72.35 E-value=5.7 Score=33.69 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCCCCccEEEeCCC-CCCccccccchhcccceeeecCCCCCHHHHHHHHHHHHHHHHHH
Q psy16137 202 FFERYFNIRYPLPKQDMVAIPDF-SAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQ 268 (448)
Q Consensus 202 ~~e~~~g~~yP~~k~~~v~~p~~-~~~~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~laHElaHq 268 (448)
+-+.+|+.|+|. .+..-.-. ..||. -.+....+-++|..-...+...+..+|+||++|-
T Consensus 13 ~s~~~F~~~f~~---~v~~n~RlrttgG~-----~~l~~~~I~lnp~ll~~~~~~~l~~vv~HElcH~ 72 (149)
T PRK04351 13 ISLEYFGKPFRH---QAYFNKRLRTTGGR-----YLLKDHHIEFNPKMLEEYGLEELIGIIKHELCHY 72 (149)
T ss_pred HHHHHhCCCCCc---EEEEeccchhhhhe-----eecCCCeEEeCHHHHhhccHHHHHhhHHHHHHHH
Confidence 456788977762 33332211 12222 1233334444433322223567789999999995
No 35
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=70.53 E-value=21 Score=31.50 Aligned_cols=15 Identities=47% Similarity=0.592 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy16137 255 YSIANTIAHELAHQW 269 (448)
Q Consensus 255 ~~~~~~laHElaHqW 269 (448)
...+.++||||+|+.
T Consensus 129 ~~~a~~~AHElGH~l 143 (194)
T cd04269 129 LLFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHHhhc
Confidence 345789999999996
No 36
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=69.72 E-value=9 Score=30.39 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=21.0
Q ss_pred cceeeecCCCCCHHHHHHHHHHHHHHHHHHHhCCccC
Q psy16137 239 ESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVT 275 (448)
Q Consensus 239 e~~ll~~~~~~~~~~~~~~~~~laHElaHqWfG~~vt 275 (448)
...++.+++.+ ......+++|||+|.+++..-.
T Consensus 28 ~~~I~in~~~~----~~~~~f~laHELgH~~~~~~~~ 60 (122)
T PF06114_consen 28 NPIIFINSNLS----PERQRFTLAHELGHILLHHGDE 60 (122)
T ss_dssp TTEEEEESSS-----HHHHHHHHHHHHHHHHHHH-HH
T ss_pred CCEEEECCCCC----HHHHHHHHHHHHHHHHhhhccc
Confidence 44566666532 2233579999999999877653
No 37
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=63.36 E-value=13 Score=32.98 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=20.1
Q ss_pred ccccccchhcccceeeecCCCCCHHHHHHHHHHHHHHHHHH
Q psy16137 228 AMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQ 268 (448)
Q Consensus 228 ~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~laHElaHq 268 (448)
|+...|-+--+........+.. ......+.++||||+|.
T Consensus 104 G~a~~~~~C~~~~s~~i~~~~~--~~~~~~a~~~AHelGH~ 142 (199)
T PF01421_consen 104 GLAYVGGMCSPSRSCGIVEDHS--RSGLSFAVIIAHELGHN 142 (199)
T ss_dssp EEE-TT-TTSTTTSEEEEE-SS--SSHHHHHHHHHHHHHHH
T ss_pred eeEeCCCCCCcCCCCcEeeecc--chhHHHHHHHHHHHHHh
Confidence 5666665544433222222221 12445678999999995
No 38
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=62.84 E-value=20 Score=26.73 Aligned_cols=63 Identities=27% Similarity=0.287 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCCCCccEEEeCCCC--CCccccccchhcccceeeecCCC---CCHHHHHHHHHHHHHHHHHHH
Q psy16137 199 FLNFFERYFNIRYPLPKQDMVAIPDFS--AGAMENWGLITYRESALLFDDVR---SSIHNEYSIANTIAHELAHQW 269 (448)
Q Consensus 199 ~l~~~e~~~g~~yP~~k~~~v~~p~~~--~~~me~~gli~~~e~~ll~~~~~---~~~~~~~~~~~~laHElaHqW 269 (448)
+...+|..||.+ ++...+-.-|.-. ...+..- -++.... +.+.+.. ++..+ ..+++||++|-+
T Consensus 6 ~r~~~e~~~G~d--l~~Vrvh~~~~a~~~~~~~~A~-A~T~G~~-I~f~~g~~~~~s~~~----~~llaHEl~Hv~ 73 (79)
T PF13699_consen 6 IRSRLERAFGAD--LSDVRVHTGPAASRAAAALGAR-AFTVGND-IYFAPGKYNPDSPEG----RALLAHELAHVV 73 (79)
T ss_pred HHHHHHHHhCCC--ccceEEEeCCchhhhhhccCCe-EEEECCE-EEEcCCCcCCCCCCc----chhHhHHHHHHH
Confidence 456789999955 7777776543211 1122221 2344444 3332221 11111 369999999964
No 39
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=62.04 E-value=6.8 Score=39.33 Aligned_cols=58 Identities=26% Similarity=0.244 Sum_probs=36.5
Q ss_pred CCCCCccEEEeCCCCCCccccccc-hhcccceeeecCCCCCHHHHHHHHHHHHHHHHHHHhCCcc
Q psy16137 211 YPLPKQDMVAIPDFSAGAMENWGL-ITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLV 274 (448)
Q Consensus 211 yP~~k~~~v~~p~~~~~~me~~gl-i~~~e~~ll~~~~~~~~~~~~~~~~~laHElaHqWfG~~v 274 (448)
-|-..++++.|.+-...+...+|. |.+....++..+ ....++.|||||++|-==++++
T Consensus 89 ~~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae------~esElagViAHEigHv~qrH~a 147 (484)
T COG4783 89 LVKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE------NESELAGVIAHEIGHVAQRHLA 147 (484)
T ss_pred CCCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC------CHHHHHHHHHHHHHHHhhhhHH
Confidence 455667888887666666666553 334444444433 2456789999999995444443
No 40
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=60.07 E-value=9.5 Score=38.23 Aligned_cols=101 Identities=17% Similarity=0.250 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCC--ccEEEeCCCCCCccccccchhcccceeeecCCCCCHHHHH-HHHHHHHHHH
Q psy16137 189 VDFAAEAGPEFLNFFERYFNIRYPLPK--QDMVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEY-SIANTIAHEL 265 (448)
Q Consensus 189 ~~~~~~~~~~~l~~~e~~~g~~yP~~k--~~~v~~p~~~~~~me~~gli~~~e~~ll~~~~~~~~~~~~-~~~~~laHEl 265 (448)
+..+...+..+.+||.+.|| .--++. ++++..-.++. ..+| .......++|.+..-...... -...++||||
T Consensus 271 ~~dAh~~~g~vyD~yk~~fg-r~S~Dn~g~~l~s~vHyG~-~ynN---AfWdG~qMvyGDGDG~~f~~~S~sLDVvAHEl 345 (507)
T COG3227 271 AVDAHYNAGKVYDYYKNTFG-RNSYDNNGMPLVSTVHYGK-NYNN---AFWDGDQMVYGDGDGSFFTPFSGSLDVVAHEL 345 (507)
T ss_pred hHHHHhhcchHHHHHHHHhc-ccCcCCCCCceEEEEeecc-cccc---ccccCceeEeecCCcceecccccccceehhhh
Confidence 56777789999999999999 434433 44444333321 1122 122233444444322111111 1136999999
Q ss_pred HHHH---hCCccCcccchhHHHhHHHHHHHHHhh
Q psy16137 266 AHQW---FGNLVTMKWWTDLWLNEGFATYMAAQA 296 (448)
Q Consensus 266 aHqW---fG~~vt~~~w~d~Wl~EG~a~y~~~~~ 296 (448)
.|.- --+++.-..- -=|||+|+.-+...+
T Consensus 346 THGvtq~tA~L~Y~~qs--GALNEsfSDvfG~~i 377 (507)
T COG3227 346 THGVTQQTAGLIYRGQS--GALNESFSDVFGTLI 377 (507)
T ss_pred cchhhhhccCceecCCC--CchhhHHHHHHHHHH
Confidence 9954 3444443322 248999999988665
No 41
>PRK03982 heat shock protein HtpX; Provisional
Probab=59.77 E-value=13 Score=35.46 Aligned_cols=20 Identities=40% Similarity=0.456 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q psy16137 253 NEYSIANTIAHELAHQWFGN 272 (448)
Q Consensus 253 ~~~~~~~~laHElaHqWfG~ 272 (448)
+...+..++|||++|-=-++
T Consensus 121 ~~~El~AVlAHElgHi~~~h 140 (288)
T PRK03982 121 NEDELEGVIAHELTHIKNRD 140 (288)
T ss_pred CHHHHHHHHHHHHHHHHcCC
Confidence 45568899999999986555
No 42
>PRK03001 M48 family peptidase; Provisional
Probab=59.18 E-value=16 Score=34.73 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q psy16137 253 NEYSIANTIAHELAHQWFGN 272 (448)
Q Consensus 253 ~~~~~~~~laHElaHqWfG~ 272 (448)
+...+..++|||++|-=-++
T Consensus 120 ~~~El~aVlAHElgHi~~~h 139 (283)
T PRK03001 120 SEREIRGVMAHELAHVKHRD 139 (283)
T ss_pred CHHHHHHHHHHHHHHHhCCC
Confidence 34567899999999975444
No 43
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=58.85 E-value=20 Score=32.62 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCccEEEeCCCCCCccccccchhcccceeeecCCCCCHHHHHHHHHHHHHHHHHHH
Q psy16137 190 DFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQW 269 (448)
Q Consensus 190 ~~~~~~~~~~l~~~e~~~g~~yP~~k~~~v~~p~~~~~~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~laHElaHqW 269 (448)
+.+.+.....+..+.+.+|.++.- +.+-.+- -..|+-...|.|.+.-.... .....+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~--~~ik~~k-~~WGScs~~~~i~~~~~l~~--------~p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRA--IKLKNMK-RRWGSCSKAGEIRFNWRLVM--------APEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc--eeeeecc-ceeeeecCCCcEEeehhhhc--------CCHHHHHHHHHHHHHHHh
Confidence 466677788888888888866542 2222211 12333333343333322111 123456789999999998
Q ss_pred hCC
Q psy16137 270 FGN 272 (448)
Q Consensus 270 fG~ 272 (448)
..|
T Consensus 188 e~n 190 (223)
T COG1451 188 EKN 190 (223)
T ss_pred hhh
Confidence 877
No 44
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=58.66 E-value=22 Score=32.19 Aligned_cols=13 Identities=46% Similarity=0.501 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q psy16137 257 IANTIAHELAHQW 269 (448)
Q Consensus 257 ~~~~laHElaHqW 269 (448)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 3689999999985
No 45
>PRK05457 heat shock protein HtpX; Provisional
Probab=58.41 E-value=17 Score=34.58 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCc
Q psy16137 253 NEYSIANTIAHELAHQWFGNL 273 (448)
Q Consensus 253 ~~~~~~~~laHElaHqWfG~~ 273 (448)
+.+.+..++|||++|.=-|+.
T Consensus 130 ~~~El~aVlAHElgHi~~~d~ 150 (284)
T PRK05457 130 SRDEVEAVLAHEISHIANGDM 150 (284)
T ss_pred CHHHHHHHHHHHHHHHHcCCH
Confidence 456778999999999866553
No 46
>PRK04897 heat shock protein HtpX; Provisional
Probab=56.96 E-value=15 Score=35.23 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q psy16137 253 NEYSIANTIAHELAHQWFGN 272 (448)
Q Consensus 253 ~~~~~~~~laHElaHqWfG~ 272 (448)
+.+.+..++|||++|-=-|+
T Consensus 133 ~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 133 NREELEGVIGHEISHIRNYD 152 (298)
T ss_pred CHHHHHHHHHHHHHHHhcCC
Confidence 34567889999999965444
No 47
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=56.23 E-value=8.3 Score=34.86 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCccCc
Q psy16137 253 NEYSIANTIAHELAHQWFGNLVTM 276 (448)
Q Consensus 253 ~~~~~~~~laHElaHqWfG~~vt~ 276 (448)
+...+..+|+||++|---++....
T Consensus 85 ~~~el~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 85 SEDELAAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp SHHHHHHHHHHHHHHHHTTHCCCC
T ss_pred cHHHHHHHHHHHHHHHHcCCcchH
Confidence 345677899999999998776555
No 48
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=52.93 E-value=87 Score=27.63 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhCC
Q psy16137 249 SSIHNEYSIANTIAHELAHQWFGN 272 (448)
Q Consensus 249 ~~~~~~~~~~~~laHElaHqWfG~ 272 (448)
........+..++.||+||.++|+
T Consensus 74 ~~fl~~~~i~~t~lHELaH~~~~~ 97 (186)
T PF08325_consen 74 GGFLPYETILGTMLHELAHNVHGP 97 (186)
T ss_pred CCEeeHHHHHHHHHHHHHhcccCC
Confidence 445567788999999999999887
No 49
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=52.04 E-value=14 Score=29.02 Aligned_cols=12 Identities=58% Similarity=1.182 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHH
Q psy16137 258 ANTIAHELAHQW 269 (448)
Q Consensus 258 ~~~laHElaHqW 269 (448)
..+++||++|-|
T Consensus 80 ~~TL~HEL~H~W 91 (141)
T PHA02456 80 RDTLAHELNHAW 91 (141)
T ss_pred HHHHHHHHHHHH
Confidence 458999999999
No 50
>KOG3607|consensus
Probab=52.00 E-value=38 Score=36.55 Aligned_cols=92 Identities=21% Similarity=0.277 Sum_probs=50.4
Q ss_pred ceEEEEEccchhhhhhhhcchhhHHHHHHHHHHHHHHHHHhcCCCCCCCccEEEeCCC--CCCccccccchhcccceeee
Q psy16137 167 VQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDF--SAGAMENWGLITYRESALLF 244 (448)
Q Consensus 167 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~g~~yP~~k~~~v~~p~~--~~~~me~~gli~~~e~~ll~ 244 (448)
+.+.+|...+.... .+.+.+.+...+.|=..++....|.+--.++..-.+ ...|+...|-+--.....-.
T Consensus 241 v~lE~Wt~~dki~~--------~~~~~~tL~~F~~wr~~~l~~r~~hD~a~L~~~~~~~~~~~G~a~~~~mCs~~~s~gv 312 (716)
T KOG3607|consen 241 VGLEIWTDGNKIDV--------SEDLRETLHNFLKWRKSYLTTRLPHDAAHLLSGILFYGKYVGLAYFGGMCSPGHSGGV 312 (716)
T ss_pred EEEEecCCCCeecc--------cccHHHHHHHHHHHHHhhccccCCCCceEEEEeeeccCceeceeecccccCcccccce
Confidence 44678888877766 556666777777777777764556665555553222 12244444432211111111
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Q psy16137 245 DDVRSSIHNEYSIANTIAHELAHQ 268 (448)
Q Consensus 245 ~~~~~~~~~~~~~~~~laHElaHq 268 (448)
.+...+ .....+.++||||+|-
T Consensus 313 ~~~~~~--~~~~~a~v~AhelgH~ 334 (716)
T KOG3607|consen 313 NKFHSD--ILLAFAVVLAHELGHN 334 (716)
T ss_pred eecCcc--cchhHHHHHHHHHHhh
Confidence 111111 1445678999999996
No 51
>PRK01345 heat shock protein HtpX; Provisional
Probab=51.35 E-value=21 Score=34.42 Aligned_cols=21 Identities=33% Similarity=0.359 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCc
Q psy16137 253 NEYSIANTIAHELAHQWFGNL 273 (448)
Q Consensus 253 ~~~~~~~~laHElaHqWfG~~ 273 (448)
+.+.+..++|||++|.=-++.
T Consensus 120 ~~dEL~aVlAHElgHi~~~d~ 140 (317)
T PRK01345 120 SPEEVAGVMAHELAHVKNRDT 140 (317)
T ss_pred CHHHHHHHHHHHHHHHHcCCH
Confidence 345678999999999865554
No 52
>PRK03072 heat shock protein HtpX; Provisional
Probab=51.05 E-value=21 Score=33.97 Aligned_cols=21 Identities=29% Similarity=0.571 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCc
Q psy16137 253 NEYSIANTIAHELAHQWFGNL 273 (448)
Q Consensus 253 ~~~~~~~~laHElaHqWfG~~ 273 (448)
+.+.+..++|||++|-=-|+.
T Consensus 123 ~~~El~aVlAHElgHi~~~d~ 143 (288)
T PRK03072 123 NERELRGVLGHELSHVYNRDI 143 (288)
T ss_pred CHHHHHHHHHHHHHHHhcCCH
Confidence 345678999999999655443
No 53
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=50.71 E-value=67 Score=29.05 Aligned_cols=41 Identities=27% Similarity=0.131 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCccC-----cccchhHHHhHHHHHHHHHhhcc
Q psy16137 258 ANTIAHELAHQWFGNLVT-----MKWWTDLWLNEGFATYMAAQALN 298 (448)
Q Consensus 258 ~~~laHElaHqWfG~~vt-----~~~w~d~Wl~EG~a~y~~~~~~~ 298 (448)
..++|||+.|-++....- ...+...=..|..|++++..+|+
T Consensus 73 rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FAa~lLm 118 (213)
T COG2856 73 RFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFAAELLM 118 (213)
T ss_pred HHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHHHHHhC
Confidence 469999999999977642 22334455688889998888743
No 54
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=49.32 E-value=57 Score=23.66 Aligned_cols=45 Identities=7% Similarity=0.169 Sum_probs=37.2
Q ss_pred hHHHHHHHHhhcHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhcc
Q psy16137 359 SFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGH 404 (448)
Q Consensus 359 ~~vl~mL~~~iG~~~f~~~l~~yl~~~~~~~~~~~df~~~l~~~~~ 404 (448)
+.+|.+|...++.+.+... ..++++++.+-++-++|.+.+...++
T Consensus 12 ~~L~~~l~~~l~~~~~~~l-~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 12 PMLFSALSKHLPPSKMDLL-QKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred HHHHHHHHHHCCHHHHHHH-HHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 5689999999999886654 55667777888999999999998865
No 55
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=49.04 E-value=12 Score=32.60 Aligned_cols=13 Identities=54% Similarity=0.639 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q psy16137 257 IANTIAHELAHQW 269 (448)
Q Consensus 257 ~~~~laHElaHqW 269 (448)
-..++||||+||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 3568999999998
No 56
>PRK02391 heat shock protein HtpX; Provisional
Probab=46.79 E-value=30 Score=33.07 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhCCc
Q psy16137 254 EYSIANTIAHELAHQWFGNL 273 (448)
Q Consensus 254 ~~~~~~~laHElaHqWfG~~ 273 (448)
...+..+++||++|---++.
T Consensus 130 ~~El~aVlaHElgHi~~~di 149 (296)
T PRK02391 130 PDELEAVLAHELSHVKNRDV 149 (296)
T ss_pred HHHHHHHHHHHHHHHHcCCH
Confidence 45678899999999765553
No 57
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=46.42 E-value=21 Score=33.87 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=35.3
Q ss_pred HHhcCCCCCCCccEEEeCCCCCCccccc---cchhcccceeeecCCCCCHHHHHHHHHHHHHHHHHHHhCCccC
Q psy16137 205 RYFNIRYPLPKQDMVAIPDFSAGAMENW---GLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVT 275 (448)
Q Consensus 205 ~~~g~~yP~~k~~~v~~p~~~~~~me~~---gli~~~e~~ll~~~~~~~~~~~~~~~~~laHElaHqWfG~~vt 275 (448)
..-+.++ -+++.++-.|.....++... |.|.+.+..+ + ..+.+.+..+++||++|.=-++.+.
T Consensus 110 ~~~~~~~-~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~gLl--~-----~l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 110 RQAGIPH-MPEVYILETPQPNAFALGGGPKNGRVVVTTGLL--D-----LLNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHCCCCC-CCeeEEecCCCccceecCCCCCCeeEEecHHHH--h-----hCCHHHHHHHHHHHHHHHhcccHHH
Confidence 3445332 45665555544333344442 4555444322 1 2245567889999999987776654
No 58
>PRK02870 heat shock protein HtpX; Provisional
Probab=43.22 E-value=31 Score=33.62 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16137 253 NEYSIANTIAHELAHQ 268 (448)
Q Consensus 253 ~~~~~~~~laHElaHq 268 (448)
+...+..+++||++|-
T Consensus 169 ~~dEL~aVlAHELgHi 184 (336)
T PRK02870 169 DRDELQAVMAHELSHI 184 (336)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4566789999999996
No 59
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=43.18 E-value=1.2e+02 Score=29.63 Aligned_cols=84 Identities=15% Similarity=0.131 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCCCCCCccEEEeCCCCCCccccccchhcccceeeecCCCCCHHHHHHHHHHHHHHHHHH---------
Q psy16137 198 EFLNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQ--------- 268 (448)
Q Consensus 198 ~~l~~~e~~~g~~yP~~k~~~v~~p~~~~~~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~laHElaHq--------- 268 (448)
.+-++..+|++.. --++.+.+.++....+|-..+-|.++.+. .....++..++.||+.=+
T Consensus 117 ~~~~~~~~y~~~~--~~~~~V~~sddl~a~A~v~~~~l~I~~~~---------~fs~~~l~~L~~HEigvH~lt~~Ng~~ 185 (349)
T PF08014_consen 117 RLQERLKKYFGKE--GFEVKVELSDDLLARAMVSGDRLKINKNA---------MFSERDLEALLHHEIGVHLLTTLNGRA 185 (349)
T ss_pred HHHHHHHHHhccc--CceEEEEEcCCcchhhcccCCeeEEcCCC---------CcCHHHHHHHHHHhhhhhhcccccccc
Confidence 3334555666632 23555555677777777555444444332 123456678999999433
Q ss_pred ----HhCCccCcccchhHHHhHHHHHHHHHhh
Q psy16137 269 ----WFGNLVTMKWWTDLWLNEGFATYMAAQA 296 (448)
Q Consensus 269 ----WfG~~vt~~~w~d~Wl~EG~a~y~~~~~ 296 (448)
|++...-+. .=..||+|.+.+++.
T Consensus 186 QPl~~l~~Glp~~----~~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 186 QPLKILSLGLPGY----TPTQEGLAVLSEYLS 213 (349)
T ss_pred CCcHHhCCCCCCC----CCCchHHHHHHHHHh
Confidence 332222111 123799999999776
No 60
>KOG2719|consensus
Probab=43.15 E-value=42 Score=33.54 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=33.9
Q ss_pred HHhcCCCCCCCccEEEeCCCCCCccccc---cchhcccceeeecCCCC--CHHHHHHHHHHHHHHHHHHHhCC
Q psy16137 205 RYFNIRYPLPKQDMVAIPDFSAGAMENW---GLITYRESALLFDDVRS--SIHNEYSIANTIAHELAHQWFGN 272 (448)
Q Consensus 205 ~~~g~~yP~~k~~~v~~p~~~~~~me~~---gli~~~e~~ll~~~~~~--~~~~~~~~~~~laHElaHqWfG~ 272 (448)
+-.| +|.+++.++-... ..+..|+ |+ .-.....+||.-.. ...+.+++..+++||++|---|+
T Consensus 228 ~s~g--fp~~k~~vi~~s~--rs~hsNAyfyG~-~~~KRIvIyDtLl~~~~~~~~eel~AVl~HELGHW~~~H 295 (428)
T KOG2719|consen 228 DSVG--FPLSKYRVIDGSK--RSSHSNAYFYGL-CKNKRIVIYDTLLLEEEHLNNEELVAVLAHELGHWKLNH 295 (428)
T ss_pred HhcC--CCceEEEEEecCC--CCCCCCeeeeec-cccceEEEehhhhhhhhccccHHHHHHHHHHhhHHHHhh
Confidence 4445 8889998776411 1222232 33 11233445553321 11235678899999999965443
No 61
>COG5504 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=42.92 E-value=1e+02 Score=28.48 Aligned_cols=90 Identities=21% Similarity=0.159 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccEEEeCCCC--------CCccccccchhcccceeeecCCCCCHHHHHHHHHHHHHHH
Q psy16137 194 EAGPEFLNFFERYFNIRYPLPKQDMVAIPDFS--------AGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHEL 265 (448)
Q Consensus 194 ~~~~~~l~~~e~~~g~~yP~~k~~~v~~p~~~--------~~~me~~gli~~~e~~ll~~~~~~~~~~~~~~~~~laHEl 265 (448)
..+.+.+..+...+. .+-.+.+++=+.|.-+ .|+-..+|.|. +...|+. +..++..+|+||+
T Consensus 79 ~~~ek~l~~~~~k~~-~pnv~~v~f~V~~~dp~irlqkg~kggg~~~~ki~-----l~l~p~~----~~~~v~aliaHE~ 148 (280)
T COG5504 79 SNCEKYLPELIVKWY-GPNVPIVDFPVTPGDPQIRLQKGRKGGGGIPGKIM-----LWLVPSS----TITSVPALIAHEY 148 (280)
T ss_pred HHHHHHHHHHHHhhc-CCCCceeeecccCCCchHHHhhcccCCCCcCceEE-----EEEecCC----CccchHHHHHHHH
Confidence 455566666655554 2344555554443222 22334555443 2223332 3345678999999
Q ss_pred HHHH-------hCCccCcccchhHHHhHHHHHHHHHhh
Q psy16137 266 AHQW-------FGNLVTMKWWTDLWLNEGFATYMAAQA 296 (448)
Q Consensus 266 aHqW-------fG~~vt~~~w~d~Wl~EG~a~y~~~~~ 296 (448)
=|-- =+..||. -|.-+-||||+++.+..
T Consensus 149 HH~~R~~~i~~~eg~vtL---le~lV~EGLAE~av~E~ 183 (280)
T COG5504 149 HHNCRLRYIDYGEGSVTL---LEALVMEGLAEHAVFEL 183 (280)
T ss_pred HhhheecccccCCCceeH---HHHHHHHHHHHHHHHHH
Confidence 9963 2333333 27889999999966554
No 62
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=42.89 E-value=78 Score=27.57 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy16137 253 NEYSIANTIAHELAHQW 269 (448)
Q Consensus 253 ~~~~~~~~laHElaHqW 269 (448)
....+..+|+|||.|.|
T Consensus 67 ~~~~l~~~l~HELIHay 83 (173)
T PF09768_consen 67 SQGHLEDTLTHELIHAY 83 (173)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34556789999999998
No 63
>PRK01265 heat shock protein HtpX; Provisional
Probab=42.79 E-value=34 Score=33.12 Aligned_cols=20 Identities=30% Similarity=0.347 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q psy16137 253 NEYSIANTIAHELAHQWFGN 272 (448)
Q Consensus 253 ~~~~~~~~laHElaHqWfG~ 272 (448)
+.+.+..++|||++|-=-++
T Consensus 136 ~~~El~aVlAHElgHik~~d 155 (324)
T PRK01265 136 NRDEIKAVAGHELGHLKHRD 155 (324)
T ss_pred CHHHHHHHHHHHHHHHHccc
Confidence 44567889999999954333
No 64
>KOG2661|consensus
Probab=42.71 E-value=60 Score=31.18 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCc
Q psy16137 253 NEYSIANTIAHELAHQWFGNL 273 (448)
Q Consensus 253 ~~~~~~~~laHElaHqWfG~~ 273 (448)
+...++.+|+||+|||=-++.
T Consensus 271 ~ddglAtvLgHE~aHaVarH~ 291 (424)
T KOG2661|consen 271 DDDGLATVLGHEIAHAVARHA 291 (424)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 445678899999999976654
No 65
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=40.03 E-value=1.6e+02 Score=24.80 Aligned_cols=37 Identities=8% Similarity=0.032 Sum_probs=23.8
Q ss_pred ceEEEEEccchhh---hhhhhcchhhHHHHHHHHHHHHHHHHHhcCCC
Q psy16137 167 VQFRTWARRDVID---QVHILFDSQVDFAAEAGPEFLNFFERYFNIRY 211 (448)
Q Consensus 167 ~~i~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~e~~~g~~y 211 (448)
.+|++|..+.... . .....+.+.+++...++..++.+
T Consensus 2 ~~i~~~i~~~~~~~~~~--------~~~~~~~v~~A~~~W~~~~~l~F 41 (156)
T cd04279 2 SPIRVYIDPTPAPPDSR--------AQSWLQAVKQAAAEWENVGPLKF 41 (156)
T ss_pred CCeEEEEcCCCCccccc--------hHHHHHHHHHHHHHHHHhCCeEE
Confidence 4678888775431 2 34566778888888888765443
No 66
>PF04293 SpoVR: SpoVR like protein; InterPro: IPR007390 One of the family members P37875 from SWISSPROT is Bacillus subtilis stage V sporulation protein R, which is involved in spore cortex formation []. Little is known about cortex biosynthesis, except that it depends on several sigma E controlled genes, including spoVR [].
Probab=38.79 E-value=90 Score=31.37 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.3
Q ss_pred HHhHHHHHHHHHhhcccccc
Q psy16137 283 WLNEGFATYMAAQALNDRYN 302 (448)
Q Consensus 283 Wl~EG~a~y~~~~~~~~~~~ 302 (448)
=||||+|+|--+.+ +..+
T Consensus 263 IMNEGWAsywH~~i--m~~l 280 (426)
T PF04293_consen 263 IMNEGWASYWHYRI--MREL 280 (426)
T ss_pred hhccchHHHHHHHH--Hhhc
Confidence 38999999999999 6555
No 67
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=38.51 E-value=1.5e+02 Score=21.51 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHhcCCCCceEEEE
Q psy16137 377 GVSNYLNKYQYRNAEQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVT 434 (448)
Q Consensus 377 ~l~~yl~~~~~~~~~~~df~~~l~~~~~~~~~~~~~~~l~~~~~~W~~~~g~P~l~v~ 434 (448)
.++..++.+.++.++..++.....+. +.++...||+.-.|.
T Consensus 18 ~l~~~~~~~~g~~l~~~~l~~~~~~l-----------------~~~y~~~GY~~s~v~ 58 (76)
T PF08479_consen 18 ELQAILAPYIGRCLTLADLQQLADAL-----------------TNYYREKGYITSRVY 58 (76)
T ss_dssp HHHHHHGGGTTSBB-HHHHHHHHHHH-----------------HHHHHHTT-TT-EEE
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHH-----------------HHHHHHcCceEEEEE
Confidence 45666777788888888888766555 778888999965544
No 68
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=38.38 E-value=35 Score=28.75 Aligned_cols=14 Identities=43% Similarity=0.546 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHH
Q psy16137 255 YSIANTIAHELAHQ 268 (448)
Q Consensus 255 ~~~~~~laHElaHq 268 (448)
..+..+|.||+||-
T Consensus 59 ~f~~~vV~HELaHl 72 (156)
T COG3091 59 DFIEQVVPHELAHL 72 (156)
T ss_pred HHHHHHHHHHHHHH
Confidence 35667888888884
No 69
>PRK11767 SpoVR family protein; Provisional
Probab=37.84 E-value=2.2e+02 Score=29.29 Aligned_cols=87 Identities=17% Similarity=0.157 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhhccccccCCCCCcchhhhhhHHHHHHHhhccccccCCCCcccc
Q psy16137 259 NTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSV 338 (448)
Q Consensus 259 ~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 338 (448)
-.|+.+.|. +|---.-. --||||+|+|--+.+ +..++ .+..+.+.+.++-+...-. ....|-
T Consensus 254 l~IVR~ea~-YF~PQ~qT-----KIMNEGWAsyWH~~i--m~~l~----d~~~l~~~~~lef~~~H~~----Vv~qp~-- 315 (498)
T PRK11767 254 LRIVRKIAQ-YFYPQRQT-----QVMNEGWATFWHYTI--LNHLY----DEGLVTDGFMLEFLHSHTN----VVFQPP-- 315 (498)
T ss_pred HHHHHHHHH-hccchhhh-----hHHhhHhHHHHHHHH--HHHhh----hcCCCCcHHHHHHHHhcCC----eeecCC--
Confidence 355556554 33332222 268999999999999 77775 2222334444444332110 000110
Q ss_pred cCCChhhhhhccc-ccccchhhHHHHHHHHhh
Q psy16137 339 PIGNPSEIAQIFD-AISYKKGSFLIRMMNSFL 369 (448)
Q Consensus 339 ~~~~~~~~~~~~~-~~~Y~Kg~~vl~mL~~~i 369 (448)
.++| .+. -..|.=|..++.-|+..-
T Consensus 316 -~~~p-----~~~giNPY~LGf~m~~DIer~~ 341 (498)
T PRK11767 316 -YNSP-----YYSGINPYALGFAMFQDIRRIC 341 (498)
T ss_pred -CCCC-----CCCCCCcHHHHHHHHHHHHHHH
Confidence 0111 111 125888888998887766
No 70
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=36.96 E-value=33 Score=26.29 Aligned_cols=31 Identities=16% Similarity=0.372 Sum_probs=22.2
Q ss_pred HHHHhhcHHHHHHHHHHHHHHhCCCCCCHHH
Q psy16137 364 MMNSFLSGKVFQQGVSNYLNKYQYRNAEQDD 394 (448)
Q Consensus 364 mL~~~iG~~~f~~~l~~yl~~~~~~~~~~~d 394 (448)
.++..||++.|....+.|+..+.-.+.+-.+
T Consensus 54 ~~~~llG~~~f~~la~~y~~~~p~~s~~l~~ 84 (94)
T PF09836_consen 54 VVRALLGEEFFDALARAYIRAHPSRSPDLND 84 (94)
T ss_dssp TGGGGS-HHHHHHHHHHHHHSGGGG-S-GGG
T ss_pred HHHHHhCHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 4567789999999999999998755544433
No 71
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=28.89 E-value=41 Score=29.65 Aligned_cols=16 Identities=44% Similarity=0.594 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy16137 254 EYSIANTIAHELAHQW 269 (448)
Q Consensus 254 ~~~~~~~laHElaHqW 269 (448)
......++||||+|.+
T Consensus 139 ~~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 139 TYNGAITFAHEIGHNL 154 (196)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred CCceehhhHHhHHHhc
Confidence 3455689999999987
No 72
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=26.56 E-value=1.4e+02 Score=26.16 Aligned_cols=14 Identities=50% Similarity=0.577 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q psy16137 256 SIANTIAHELAHQW 269 (448)
Q Consensus 256 ~~~~~laHElaHqW 269 (448)
....++|||++|..
T Consensus 132 ~~~~~~aHElGH~l 145 (192)
T cd04267 132 LTALTMAHELGHNL 145 (192)
T ss_pred eehhhhhhhHHhhc
Confidence 44679999999975
No 73
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=26.13 E-value=1.5e+02 Score=28.16 Aligned_cols=99 Identities=15% Similarity=0.077 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCC--------CCccEEEeCCCCCCcccccc-chhcccceeeecCCCCCHHHHHH-
Q psy16137 187 SQVDFAAEAGPEFLNFFERYFNIRYPL--------PKQDMVAIPDFSAGAMENWG-LITYRESALLFDDVRSSIHNEYS- 256 (448)
Q Consensus 187 ~~~~~~~~~~~~~l~~~e~~~g~~yP~--------~k~~~v~~p~~~~~~me~~g-li~~~e~~ll~~~~~~~~~~~~~- 256 (448)
.+.+..++...++++...++.|.+.+. .+..+|.-.....+.|-..| -|.+..... ........
T Consensus 143 ~d~~~ll~~~D~ii~~~~el~Gl~~~~~~~~~~~~~~~r~v~~v~~~~g~m~a~g~~i~~~~~~~------~~~l~~~~~ 216 (307)
T PF13402_consen 143 EDPEELLRFWDRIIDAEYELAGLDKSSPGPENNPMPNNRFVFDVQISAGYMHASGYPIGFPPNWM------NELLNPNPL 216 (307)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTT-BSS--GGGB--S--EEEEEETT----SEEEETTEEEEETT--------HHHH-HHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCcccCCccccCcccceEEEeccccccceeecCCcEEeeCcHH------hcccCHhHc
Confidence 346788889999999999999987732 22367776766666665333 222222100 00111111
Q ss_pred --HHHHHHHHHHHHHhCCccCcccchhHHHhHHHHHHHHHhh
Q psy16137 257 --IANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYMAAQA 296 (448)
Q Consensus 257 --~~~~laHElaHqWfG~~vt~~~w~d~Wl~EG~a~y~~~~~ 296 (448)
-.--+.||+.|+-= ..+-.|.. +.|.-...++...
T Consensus 217 ~~~~WG~~HE~GH~~Q---~~~~~~~g--~~EvTnNi~sl~~ 253 (307)
T PF13402_consen 217 RKGGWGPWHELGHNHQ---QGPWTWSG--MGEVTNNIYSLYV 253 (307)
T ss_dssp HHH-HHHHHHHHHHH----BGGG--TT---TTTTHHHHHHHH
T ss_pred CCCCeeehhhhhhhcC---ccccccCC--CCchhhHHHHHHH
Confidence 13378999999841 11112332 5666666666655
No 74
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=25.97 E-value=64 Score=30.69 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=17.7
Q ss_pred ceeeecCCCCCHHHHHHHHHHHHHHHHHH
Q psy16137 240 SALLFDDVRSSIHNEYSIANTIAHELAHQ 268 (448)
Q Consensus 240 ~~ll~~~~~~~~~~~~~~~~~laHElaHq 268 (448)
..++.++......+.+....++.||++|-
T Consensus 179 p~I~lP~~~~~~~~~~el~~il~HEl~Hi 207 (299)
T PF05569_consen 179 PVIVLPESLLEDLSEEELRAILLHELAHI 207 (299)
T ss_pred eEEEecCccccccCHHHHHHHHHHHHHHH
Confidence 34555554332233445568999999994
No 75
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=24.43 E-value=33 Score=24.42 Aligned_cols=22 Identities=14% Similarity=0.397 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHhcCCCCceEEE
Q psy16137 411 QNLTVKEIMDSWTLQTGYPIVDV 433 (448)
Q Consensus 411 ~~~~l~~~~~~W~~~~g~P~l~v 433 (448)
+..++..|+..|+.+ +.|.+.-
T Consensus 45 t~~dln~Flk~W~~G-~~~~Le~ 66 (70)
T PF07735_consen 45 TNEDLNKFLKHWING-SNPRLEY 66 (70)
T ss_pred CHHHHHHHHHHHHcC-CCcCCcE
Confidence 677999999999999 8887653
No 76
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=24.27 E-value=1e+02 Score=20.89 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Q psy16137 371 GKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAG 403 (448)
Q Consensus 371 ~~~f~~~l~~yl~~~~~~~~~~~df~~~l~~~~ 403 (448)
++..+..++.++...-..+++..++.+.|++..
T Consensus 2 d~~i~~~i~~iL~~~dl~~vT~k~vr~~Le~~~ 34 (54)
T PF08766_consen 2 DEEIREAIREILREADLDTVTKKQVREQLEERF 34 (54)
T ss_dssp HHHHHHHHHHHHTTS-GGG--HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCCHhHhhHHHHHHHHHHHH
Confidence 567888999999999888999999999999984
No 77
>PF14891 Peptidase_M91: Effector protein
Probab=23.88 E-value=54 Score=28.52 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHH
Q psy16137 256 SIANTIAHELAHQW 269 (448)
Q Consensus 256 ~~~~~laHElaHqW 269 (448)
.-..+|+|||+|-|
T Consensus 102 ~p~v~L~HEL~HA~ 115 (174)
T PF14891_consen 102 PPFVVLYHELIHAY 115 (174)
T ss_pred HHHHHHHHHHHHHH
Confidence 34579999999998
No 78
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=21.24 E-value=2e+02 Score=24.17 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCC
Q psy16137 189 VDFAAEAGPEFLNFFERYFNIRY 211 (448)
Q Consensus 189 ~~~~~~~~~~~l~~~e~~~g~~y 211 (448)
.+...+.+..++..+++..++.+
T Consensus 20 ~~~~~~~v~~a~~~w~~~~~i~f 42 (167)
T cd00203 20 SAQIQSLILIAMQIWRDYLNIRF 42 (167)
T ss_pred HHHHHHHHHHHHHHHHhhhCceE
Confidence 35667788888999988877665
No 79
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=20.14 E-value=60 Score=29.02 Aligned_cols=13 Identities=62% Similarity=0.624 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q psy16137 257 IANTIAHELAHQW 269 (448)
Q Consensus 257 ~~~~laHElaHqW 269 (448)
.+.++||||+|.-
T Consensus 140 ~a~~~aHElGH~L 152 (207)
T cd04273 140 SAFTIAHELGHVL 152 (207)
T ss_pred eEEeeeeechhhc
Confidence 3579999999973
Done!