RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16137
(448 letters)
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 396 bits (1018), Expect = e-130
Identities = 125/310 (40%), Positives = 177/310 (57%), Gaps = 38/310 (12%)
Query: 158 NTSNPDLSRVQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQD 217
+ S S V+ +A D I+Q D+A +A L F+E YF+I YPLPKQD
Sbjct: 211 SVSKITKSGVKVSVYAVPDKINQA--------DYALDAAVTLLEFYEDYFSIPYPLPKQD 262
Query: 218 MVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMK 277
+ AIPDF +GAMENWGL TYRESALLFD +SS ++ I T+AHELAHQWFGNLVTM+
Sbjct: 263 LAAIPDFQSGAMENWGLTTYRESALLFDAEKSSASSKLGITMTVAHELAHQWFGNLVTME 322
Query: 278 WWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVS 337
WW DLWLNEGFA +M +++ + P K+ D +D+L+SSHPVS
Sbjct: 323 WWNDLWLNEGFAKFMEFVSVSVTH--P----ELKVGD-YFFGKCFDAMEVDALNSSHPVS 375
Query: 338 VPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWE 397
P+ NP++I ++FD +SY KG+ ++ M+ +LS F+ G+ YL K+ Y+N + +DLW+
Sbjct: 376 TPVENPAQIREMFDDVSYDKGACILNMLREYLSADAFKSGIVQYLQKHSYKNTKNEDLWD 435
Query: 398 SLTEAGHRSKV-------------------LPQNLTVKEIMDSWTLQTGYPIVDVTREYG 438
S+ V + + VK +M++WTLQ G+P++ +T
Sbjct: 436 SMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKGFPLITITVRGR 495
Query: 439 KGGKIVRFSQ 448
V Q
Sbjct: 496 N----VHMKQ 501
Score = 71.0 bits (174), Expect = 3e-13
Identities = 27/166 (16%), Positives = 46/166 (27%), Gaps = 48/166 (28%)
Query: 4 KFKNRSTKPGWMWDVFQKSAPMSPYLVTSIISTNYYL---------------------IL 42
K ++TK +WD P + L
Sbjct: 422 KHSYKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTL 481
Query: 43 QTGYPIVDVTREYGKGGKIVRFSQRRFLALPNLKKEDSSQCWWIPITLMTSKSADFSDSK 102
Q G+P++ +T V Q ++ + D+ W +P+T +TSKS
Sbjct: 482 QKGFPLITITVRGRN----VHMKQEHYMKGSD-GAPDTGYLWHVPLTFITSKSDMVHR-- 534
Query: 103 PIWLPCDQQKSAGKQADQHDIISNEKMELREEMGESDWLIVNKQMT 148
L D++ E +W+ N M
Sbjct: 535 -FLLKTKT-----------DVLILP--------EEVEWIKFNVGMN 560
Score = 35.1 bits (81), Expect = 0.049
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 6 KNRSTKPGWMWDVFQKSAPMSPYLVTSIIS 35
K+ + G + D F + MS YLV IIS
Sbjct: 178 KSVTVAEGLIEDHFDVTVKMSTYLVAFIIS 207
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 395 bits (1017), Expect = e-129
Identities = 127/310 (40%), Positives = 179/310 (57%), Gaps = 38/310 (12%)
Query: 158 NTSNPDLSRVQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQD 217
+ S S V+ +A D +Q +A +A + L+F+E+YF+I YPL K D
Sbjct: 273 SLSGFTSSGVKVSIYASPDKRNQT--------HYALQASLKLLDFYEKYFDIYYPLSKLD 324
Query: 218 MVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMK 277
++AIPDF+ GAMENWGLITYRE++LLFD SS ++ + IAHELAHQWFGNLVTM+
Sbjct: 325 LIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTME 384
Query: 278 WWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVS 337
WW D+WLNEGFA YM A+N Y P + D L+ + DSL+SS P+S
Sbjct: 385 WWNDIWLNEGFAKYMELIAVNATY--P----ELQFDD-YFLNVCFEVITKDSLNSSRPIS 437
Query: 338 VPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWE 397
P P++I ++FD +SY KG+ ++ M+ FL + FQ+G+ YL K+ YRNA+ DDLW
Sbjct: 438 KPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWS 497
Query: 398 SLTEA-------------------GHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYG 438
SL+ + + L +N VKE+M +WTLQ G P++ V ++
Sbjct: 498 SLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQDGC 557
Query: 439 KGGKIVRFSQ 448
+R Q
Sbjct: 558 S----LRLQQ 563
Score = 67.9 bits (166), Expect = 3e-12
Identities = 30/171 (17%), Positives = 50/171 (29%), Gaps = 52/171 (30%)
Query: 4 KFKNRSTKPGWMWDVFQKSAPMSPYLVTSIISTNYYL---------------------IL 42
KF R+ K +W S S + + ++ + L
Sbjct: 484 KFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTL 543
Query: 43 QTGYPIVDVTREYGKGGKIVRFSQRRFL-----ALPNLKKEDSSQCWWIPITLMTSKSAD 97
Q G P++ V ++ +R Q RFL P + W IP+T TS S
Sbjct: 544 QKGIPLLVVKQDGCS----LRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNV 599
Query: 98 FSDSKPIWLPCDQQKSAGKQADQHDIISNEKMELREEMGESDWLIVNKQMT 148
L + ++L E ++ W+ N
Sbjct: 600 IHR---HILKSKT----------------DTLDLPE---KTSWVKFNVDSN 628
Score = 35.2 bits (81), Expect = 0.048
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 6 KNRSTKPGWMWDVFQKSAPMSPYLVTSIIS 35
K + G + D F+ + MS YLV I+
Sbjct: 240 KTIELEGGLLEDHFETTVKMSTYLVAYIVC 269
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 387 bits (996), Expect = e-128
Identities = 99/284 (34%), Positives = 157/284 (55%), Gaps = 29/284 (10%)
Query: 165 SRVQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDF 224
+ + +D + + + + + F+E YF I Y LPK ++++P+F
Sbjct: 178 RDIDLILASLKD----------IRSKYPLDMARKSVEFYENYFGIPYALPKMHLISVPEF 227
Query: 225 SAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWL 284
AGAMENWG IT+RE + + S++ + + AN IAHE+AHQWFG+LVTMKWW DLWL
Sbjct: 228 GAGAMENWGAITFREIYMDIAEN-SAVTVKRNSANVIAHEIAHQWFGDLVTMKWWNDLWL 286
Query: 285 NEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPS 344
NE FAT+M+ + ++ + P W +S DSL ++HP+ V + +P
Sbjct: 287 NESFATFMSYKTMDTLF--P----EWSFWGDFFVSRTSGALRSDSLKNTHPIEVDVRDPD 340
Query: 345 EIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGH 404
EI+QIFD ISY KG+ ++RM+ + + F++G+S YLN +++ NAE DLW ++ +
Sbjct: 341 EISQIFDEISYGKGASILRMIEDYAGYEEFRKGISKYLNDHKFGNAEGSDLWTAIEDVSG 400
Query: 405 RSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYGKGGKIVRFSQ 448
+ VK +M+ W GYP++ + R K + Q
Sbjct: 401 K--------PVKRVMEYWIKNPGYPVIKLKRNGRK----ITMYQ 432
Score = 61.2 bits (149), Expect = 4e-10
Identities = 18/146 (12%), Positives = 38/146 (26%), Gaps = 43/146 (29%)
Query: 4 KFKNRSTKPGWMWDVFQKSAPMSPYLVTSIISTNYYLILQTGYPIVDVTREYGKGGKIVR 63
K + + +W + + V ++ I GYP++ + R K +
Sbjct: 380 DHKFGNAEGSDLWTAIEDVSGKP---VKRVMEY---WIKNPGYPVIKLKRNGRK----IT 429
Query: 64 FSQRRFLALPNLKKEDSSQCWWIPITLMTSKSADFSDSKPIWLPCDQQKSAGKQADQHDI 123
Q RFL + W +P+ + + I
Sbjct: 430 MYQTRFLL-----NGEEEGRWPVPVNIKKKDGVER-----IL------------------ 461
Query: 124 ISNEKMELREEMGESDWLIVNKQMTA 149
+E + + +N
Sbjct: 462 -----LEDEASIEADGLIKINADSAG 482
Score = 34.3 bits (79), Expect = 0.080
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 8 RSTKPGWMWDVFQKSAPMSPYLVTSIIS 35
R FQ + MS YL+ I
Sbjct: 141 RIEVSERKVVEFQDTPRMSTYLLYVGIG 168
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 304 bits (781), Expect = 9e-98
Identities = 56/286 (19%), Positives = 105/286 (36%), Gaps = 32/286 (11%)
Query: 167 VQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIP-DFS 225
+ W+ ++ +++ + L E Y + D++ +P F
Sbjct: 222 PRTLVWSEKEQVEKS--------AYEFSETESMLKIAEDLG-GPYVWGQYDLLVLPPSFP 272
Query: 226 AGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLN 285
G MEN L + L D S++N IAH+++H W GNLVT K W WLN
Sbjct: 273 YGGMENPCLTFVTPTLLAGDK---------SLSNVIAHQISHSWTGNLVTNKTWDHFWLN 323
Query: 286 EGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSE 345
EG Y+ + L + + +HP + + + ++
Sbjct: 324 EGHTVYLERHICGRLFGE------KFRHFNALGGWGELQNSVKTFGETHPFTKLVVDLTD 377
Query: 346 IAQ--IFDAISYKKGSFLIRMMNSFLSGK-VFQQGVSNYLNKYQYRNAEQDDLWESLTEA 402
I + ++ Y+KG L+ + L G +F + Y+ K+ Y++ DD + L
Sbjct: 378 IDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSY 437
Query: 403 GHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYGKGGKIVRFSQ 448
++ + ++W G P + + + SQ
Sbjct: 438 FKD----KVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQ 479
Score = 38.6 bits (90), Expect = 0.004
Identities = 10/81 (12%), Positives = 22/81 (27%), Gaps = 2/81 (2%)
Query: 4 KFKNRSTKPGWMWDVFQKSAPMSPYLVTSIISTNYYLILQTGYPIVDVTREYGKGGKIVR 63
KF +S D ++ + + + G P + + +
Sbjct: 419 KFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAW--LYSPGLPPIKPNYDMTLTNACIA 476
Query: 64 FSQRRFLALPNLKKEDSSQCW 84
SQR A + ++
Sbjct: 477 LSQRWITAKEDDLNSFNATDL 497
Score = 29.8 bits (67), Expect = 2.0
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 1 MVIKFKNRSTKPGWMWDVFQKSAPMSPYLVTSIIS 35
+ P F + P+ YL+ ++
Sbjct: 179 IRDGETPDPEDPSRKIYKFIQKVPIPCYLIALVVG 213
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 304 bits (780), Expect = 2e-97
Identities = 51/276 (18%), Positives = 92/276 (33%), Gaps = 32/276 (11%)
Query: 167 VQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQD-MVAIPDFS 225
+ + + + E E Y D +V + +
Sbjct: 221 PRSTVYTEPFRLKDCQ--------WEFENDVEKFIQTAEKIIFEYEWGTYDILVNVDSYP 272
Query: 226 AGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLN 285
G ME+ + + L D S + IAHELAH W GNLVT W WLN
Sbjct: 273 YGGMESPNMTFATPTLLAHDR---------SNIDVIAHELAHSWSGNLVTNCSWNHFWLN 323
Query: 286 EGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVP---IGN 342
EG+ Y+ + + + + L +DS+ S + +
Sbjct: 324 EGWTVYLERRIIGAIHGE------PTRHFSALIGWSDLQNSIDSMKDPERFSTLVQNLND 377
Query: 343 PSEIAQIFDAISYKKGSFLIRMMNSFLSGK-VFQQGVSNYLNKYQYRNAEQDDLWESLTE 401
++ F + Y+KG L+ + + L GK F + +Y K+ ++ + ++L E
Sbjct: 378 NTDPDDAFSTVPYEKGFNLLFHLETILGGKAEFDPFIRHYFKKFAKKSLDTFQFLDTLYE 437
Query: 402 AGHRSKVLPQNLTVKEIMDSWTLQTGYPIVDVTREY 437
+ + ++W + G P
Sbjct: 438 FYPE----KKEILDSVDWETWLYKPGMPPRPHFITA 469
Score = 33.3 bits (76), Expect = 0.17
Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 3/92 (3%)
Query: 4 KFKNRSTKPGWMWDVFQKSAPMSPYLVTSIISTNYYLILQTGYPIVDVTREYGKGGKIVR 63
KF +S D + P ++ S+ + + + G P + +
Sbjct: 420 KFAKKSLDTFQFLDTLYEFYPEKKEILDSVDWETW--LYKPGMPPRPHFITA-LADNVYQ 476
Query: 64 FSQRRFLALPNLKKEDSSQCWWIPITLMTSKS 95
+ + +LK + + + I + S
Sbjct: 477 LADKWVEMAQHLKTTEDFRSEFNAIDIKDFNS 508
Score = 30.2 bits (68), Expect = 1.4
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 9 STKPGWMWDVFQKSAPMSPYLVTSIIS 35
T F++ P+ YL+
Sbjct: 186 DTSKDTNIYRFEQKVPIPAYLIGIASG 212
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 292 bits (750), Expect = 3e-93
Identities = 57/277 (20%), Positives = 105/277 (37%), Gaps = 28/277 (10%)
Query: 170 RTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIP-DFSAGA 228
+A ++D + ++ E+ + +Y + D++ +P F G
Sbjct: 224 GIYAESYILDAAV--------AEFDDTQAMIDKAEQMY-GKYRWGRYDLLMLPPSFPFGG 274
Query: 229 MENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLNEGF 288
MEN L + + D S+ N IAHELAH W GNLVT + W DLWLNEGF
Sbjct: 275 MENPRLSFITPTVVAGDK---------SLVNLIAHELAHSWSGNLVTNESWRDLWLNEGF 325
Query: 289 ATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSEIAQ 348
+Y+ + + + + L + + +L LD+ + + + +P +
Sbjct: 326 TSYVENRIMEAVFGTDRAVMEQALGAQDLNAEILE---LDASDTQLYIDLKGRDPDD--- 379
Query: 349 IFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHRSKV 408
F + Y KG + + + F V Y + + +++ D+ + L
Sbjct: 380 AFSGVPYVKGQLFLMYLEEKFGRERFDAFVLEYFDSHAFQSLGTDNFVKYLKANLTDKYP 439
Query: 409 LPQNLTVKEIMDSWTLQTGYPIVDVTREYGKGGKIVR 445
N+ ++ W + G P I +
Sbjct: 440 ---NIVSDNEINEWIFKAGLPSYAPQPTSNAFKVIDK 473
Score = 32.8 bits (75), Expect = 0.24
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 7/76 (9%)
Query: 41 ILQTGYPIVDVTREYGKGGKIVRFSQRRFLALPNLKKEDSSQCWWIPITLMTSKSADFSD 100
I + G P I + Q L L E W + F +
Sbjct: 451 IFKAGLPSYAPQPTSNAFKVIDK--QINQLVTDELTLEQLPTAQWTLHEWL-----HFIN 503
Query: 101 SKPIWLPCDQQKSAGK 116
+ P+ L + + K
Sbjct: 504 NLPVDLDHQRMVNLDK 519
Score = 28.6 bits (64), Expect = 5.2
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 7 NRSTKPGWMWDVFQKSAPMSPYLV 30
N F + PYL+
Sbjct: 184 NEPGTERDGDYFFSMPQAIPPYLI 207
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 250 bits (640), Expect = 7e-75
Identities = 64/283 (22%), Positives = 107/283 (37%), Gaps = 18/283 (6%)
Query: 166 RVQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFS 225
+V+ ++ + ++ +A E + + F E YF + Y L + ++VA+ DF+
Sbjct: 212 KVELYVFSEEKYVSKL--------QWALECLKKSMAFDEDYFGLEYDLSRLNLVAVSDFN 263
Query: 226 AGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLN 285
GAMEN GL + ++LL S + I + HE HQ+ GN VT++ W L L
Sbjct: 264 VGAMENKGLNIFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLK 323
Query: 286 EGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSE 345
EG + + + F DS SHP+
Sbjct: 324 EGLTVHRENLFSEEMTKT------VTTRLSHVDLLRSVQFLEDSSPLSHPIRPES--YVS 375
Query: 346 IAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHR 405
+ + Y KGS ++RM + L + +++G Y+ K A +D ++ +A
Sbjct: 376 MENFYTTTVYDKGSEVMRMYLTILGEEYYKKGFDIYIKKNDGNTATCEDFNYAMEQAY-- 433
Query: 406 SKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYGKGGKIVRFSQ 448
N W Q+G P V Y K
Sbjct: 434 KMKKADNSANLNQYLLWFSQSGTPHVSFKYNYDAEKKQYSIHV 476
Score = 39.5 bits (92), Expect = 0.002
Identities = 19/148 (12%), Positives = 41/148 (27%), Gaps = 8/148 (5%)
Query: 16 WDVFQKSAPMSPYLVTSIISTNYYLILQTGYPIVDVTREYGKGGKIVRFSQRRFLALPNL 75
+++ M ++ ++ Q+G P V Y K ++
Sbjct: 426 NYAMEQAYKMKKADNSANLNQYLLWFSQSGTPHVSFKYNYDAEKKQYSIHVNQYTKPDEN 485
Query: 76 KKEDSSQCWWIPITLMTSKSAD-FSDSKPIWLPCDQQKSAGKQADQHDIISNEKMELREE 134
+KE I + L+ ++ + L + I S +
Sbjct: 486 QKEKKPLFIPISVGLINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFR------ 539
Query: 135 MGESDWLIVNKQMTALALTFRQSNTSNP 162
G S + + Q+T S+
Sbjct: 540 -GFSAPVYIEDQLTDEERILLLKYDSDA 566
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 221 bits (564), Expect = 3e-64
Identities = 66/283 (23%), Positives = 113/283 (39%), Gaps = 25/283 (8%)
Query: 166 RVQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFS 225
V+ + +V FA E+ + + E F + Y L +VA+ DF+
Sbjct: 204 NVKIEFYTTEADKPKV--------GFAVESLKNAMKWDETRFGLEYDLDIFMVVAVGDFN 255
Query: 226 AGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLN 285
GAMEN GL + +L D ++ + I + + HE H W GN VT + W L L
Sbjct: 256 MGAMENKGLNIFNTKFVLADSRTATDTDFEGIESVVGHEYFHNWTGNRVTCRDWFQLSLK 315
Query: 286 EGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSE 345
EG + + DR +R FP D+ ++HPV + E
Sbjct: 316 EGLTVFRDQEFSGDRASR------AVRRIENIRLLRQHQFPEDAGPTAHPVRPA--SYEE 367
Query: 346 IAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHR 405
+ + Y+KG+ ++RM ++ L + FQ+G+ Y ++ + DD ++ +A
Sbjct: 368 MNNFYTMTVYEKGAEVVRMYHTLLGEEGFQKGMKLYFQRHDGQAVTCDDFRAAMADANGI 427
Query: 406 SKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYGKGGKIVRFSQ 448
NL + W Q G P+++ + Q
Sbjct: 428 ------NL---DQFALWYSQAGTPVLEAEGRLKNNIFELTVKQ 461
Score = 33.3 bits (76), Expect = 0.19
Identities = 23/163 (14%), Positives = 45/163 (27%), Gaps = 21/163 (12%)
Query: 43 QTGYPIVDVTREYGKGGKIVRFSQRRFLALPNLKKEDSSQCWWIPITL----------MT 92
Q G P+++ + Q +P Q IP+ +
Sbjct: 438 QAGTPVLEAEGRLKNNIFELTVKQT----VPPTPDMTDKQPMMIPVKVGLLNRNGEAVAF 493
Query: 93 SKSADFSDSKPIWLPCDQQKSAGKQADQHDIISNEKMELREEMGESDWLIVNKQMTALAL 152
+ + L +Q + + + S + G S + +N + L
Sbjct: 494 DYQGKRATEAVLLLTEAEQTFLLEGVTEAVVPSLLR-------GFSAPVHLNYPYSDDDL 546
Query: 153 TFRQSNTSNPDLSRVQFRTWARRDVIDQVHILFDSQVDFAAEA 195
++ S+ +T RR V + L D E
Sbjct: 547 LLLLAHDSDAFTRWEAAQTLYRRAVAANLATLSDGVELPKHEK 589
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 210 bits (536), Expect = 2e-60
Identities = 68/285 (23%), Positives = 117/285 (41%), Gaps = 27/285 (9%)
Query: 166 RVQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFS 225
V + R +D+ +A + + + E F + Y L +VA+ F+
Sbjct: 229 EVALELYVDRGNLDRA--------PWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFN 280
Query: 226 AGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLN 285
GAMEN GL + +L ++ + I I HE H W GN VT + W L L
Sbjct: 281 MGAMENKGLNIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLK 340
Query: 286 EGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSE 345
EG + + +D +R + L F D+ +HP+ E
Sbjct: 341 EGLTVFRDQEFSSDLGSR------AVNRINNVRTMRGLQFAEDASPMAHPIRPD--MVIE 392
Query: 346 IAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEAGHR 405
+ + Y+KG+ +IRM+++ L + FQ+G+ Y ++ A DD +++ +A +
Sbjct: 393 MNNFYTLTVYEKGAEVIRMIHTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNV 452
Query: 406 SKVLPQNLTVKEIMDSWTLQTGYPIVDVTREYGKGGKI--VRFSQ 448
+L+ W Q+G PIV V +Y + + SQ
Sbjct: 453 ------DLS---HFRRWYSQSGTPIVTVKDDYNPETEQYTLTISQ 488
Score = 28.0 bits (62), Expect = 8.2
Identities = 10/55 (18%), Positives = 18/55 (32%)
Query: 43 QTGYPIVDVTREYGKGGKIVRFSQRRFLALPNLKKEDSSQCWWIPITLMTSKSAD 97
Q+G PIV V +Y + + + + E I L ++
Sbjct: 463 QSGTPIVTVKDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKV 517
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 61.7 bits (150), Expect = 1e-10
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 27/105 (25%)
Query: 45 GYPIVDVTREYGKGGKIVRFSQRRFLALPNLKKEDSSQCWWIPITLMTSKSADFSDSKPI 104
G+P++ +T V Q ++ + D+ W +P+T +TSKS
Sbjct: 1 GFPLITITVRGRN----VHMKQEHYMKGSD-GAPDTGYLWHVPLTFITSKSDMVHR---F 52
Query: 105 WLPCDQQKSAGKQADQHDIISNEKMELREEMGESDWLIVNKQMTA 149
L + +W+ N M
Sbjct: 53 LLKTKTDVLILPEEV-------------------EWIKFNVGMNG 78
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 3e-08
Identities = 73/414 (17%), Positives = 117/414 (28%), Gaps = 138/414 (33%)
Query: 87 PITLMTSKSADFSDSKP--IWLPCDQQKSAGKQADQHDIISNEKMELREEMGESDWLIVN 144
P+TL + S + P + Q L+E+ N
Sbjct: 8 PLTL-SHGSLEHVLLVPTASFFIASQ--------------------LQEQF--------N 38
Query: 145 KQMTALALTFRQSN--TSNPDL-SR-VQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFL 200
K + F + T+ +L + + + V V Q D L
Sbjct: 39 KILPEPTEGFAADDEPTTPAELVGKFLGY-------VSSLVEPSKVGQFDQVLNLC---L 88
Query: 201 NFFERYF----NI-----------RYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFD 245
FE + +I L K + +A M SAL F
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-FR 147
Query: 246 DVRSSIHNEYSIANTIAHELAHQWF---GNLVTMKWWTDLWLNEGFATY---------MA 293
V +I F GN T ++ +L + + TY +
Sbjct: 148 AVGEGNAQLVAI------------FGGQGN--TDDYFEEL--RDLYQTYHVLVGDLIKFS 191
Query: 294 AQALND--RYNRPGSKHSWKLLDGEA-LSNVLLIFPLDSLSSSHPVSVP-IG-------- 341
A+ L++ R K + L+ L N D L S P+S P IG
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-PISCPLIGVIQLAHYV 250
Query: 342 --------NPSEIAQIFDAIS-YKKG---SFLIRMMNSFLSGKVFQQGVSNYLNKYQYRN 389
P E+ + + +G + I +S+ S F V +
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES---FFVSVRKAI------- 300
Query: 390 AEQDDLWESLTEAGHRS-KVLPQ-NLTVKEIMDSWTLQTGYP-----IVDVTRE 436
L G R + P +L + DS G P I ++T+E
Sbjct: 301 -------TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Score = 46.2 bits (109), Expect = 2e-05
Identities = 58/357 (16%), Positives = 111/357 (31%), Gaps = 128/357 (35%)
Query: 92 TSKSADFSDSKPIWLPCDQQKSAGKQADQHDIISNEKMELREEMGESDWLIVNKQMTALA 151
TSK+A + +W +AD H ++ G S IV L
Sbjct: 1638 TSKAA-----QDVW----------NRADNH---------FKDTYGFSILDIVINNPVNLT 1673
Query: 152 LTFRQSNTSNPDLSRVQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRY 211
+ F +R + ++F++ VD + F E + +
Sbjct: 1674 IHFGGEK--------------GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 212 PLPKQDM-------VAIPDFSAG-----AMENWGLITYRESALLFDDVRSSI--HN--EY 255
K + A+ +++ GLI ++ H+ EY
Sbjct: 1720 RSEKGLLSATQFTQPAL--TLMEKAAFEDLKSKGLI----------PADATFAGHSLGEY 1767
Query: 256 SIANTIAHELAHQWFGNLVTMKWWTDLWLNEGFATYM----AAQALNDRYNRPGSKHSWK 311
+ A LA A M + + R
Sbjct: 1768 A-A------LAS--------------------LADVMSIESLVEVVFYR----------- 1789
Query: 312 LLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSG 371
G + + P D L S+ + I NP +A F + + +++ + +G
Sbjct: 1790 ---GMTMQVAV---PRDELGRSNYGMIAI-NPGRVAASFSQEALQ---YVVERVGK-RTG 1838
Query: 372 KVFQQGVSNYLNK--YQYRNA-EQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWTLQ 425
+ + + NY N QY A + L +++T + K+ Q + + E+ S +L+
Sbjct: 1839 WLVE--IVNY-NVENQQYVAAGDLRAL-DTVTNVLNFIKL--QKIDIIELQKSLSLE 1889
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 6e-06
Identities = 79/522 (15%), Positives = 134/522 (25%), Gaps = 172/522 (32%)
Query: 1 MVIKFKNRSTKP--GWMWDVFQKSAPMSPYLVTSIISTNYYLILQTGYPIV---DVTRE- 54
MV KF + ++ + P ++T + L + +V+R
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTE-QRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQ 135
Query: 55 --------------------YGKGG--KIVRFSQRRFLALPNLKKEDSSQC-----WWIP 87
G G K +AL +W+
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTW-------VALDVCLSYKVQCKMDFKIFWL- 187
Query: 88 ITLMTSKSADFSDSKPIWLPCDQQKSAGKQADQHDIISNEKMELREEMGESDWLIVNKQM 147
L S + + + + Q + D SN K+ + E L+ +K
Sbjct: 188 -NLKNCNSPE-TVLEMLQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 148 -TALALTFRQSNTSNP------DLS-RVQFRTWARRD--VIDQV------HILFDSQVDF 191
L L N N +LS ++ T R V D + HI D
Sbjct: 244 ENCL-LVLL--NVQNAKAWNAFNLSCKILLTT---RFKQVTDFLSAATTTHISLDHHSMT 297
Query: 192 AAEAGPEFLNFFERYFNIRYP-LPKQDMVAIPDFSA--GAM--------ENWGLIT---- 236
E + +Y + R LP++ + P + +NW +
Sbjct: 298 LTP--DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 237 -------------------YRESALLFDDVRSSIH--------NEYSIANTIAHELAHQW 269
+ ++ S + ++L
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY- 414
Query: 270 FGNLVTMKWWT-------DLWLNEGFATYMAAQALN----DRYNRPGSKHSWKLLDGEAL 318
+LV K ++L AL+ D YN P + S L+
Sbjct: 415 --SLVE-KQPKESTISIPSIYLELK-VKLENEYALHRSIVDHYNIPKTFDSDDLIPP--- 467
Query: 319 SNVLLIFPLDSLSSSHPVSVPIG------NPSEIAQIFDAISYKKGSFLIRMMN-SFLSG 371
LD SH IG E +F + FL + FL
Sbjct: 468 -------YLDQYFYSH-----IGHHLKNIEHPERMTLFRMV------FL----DFRFLEQ 505
Query: 372 KVFQQGVSNY-----------LNKYQYRNAEQDDLWESLTEA 402
K+ + L Y+ + D +E L A
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Score = 40.2 bits (93), Expect = 0.001
Identities = 48/386 (12%), Positives = 106/386 (27%), Gaps = 136/386 (35%)
Query: 104 IWLPCDQQKSAGKQA-------------------------------DQHDIISN------ 126
W +Q+ ++ +Q D + N
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 127 --------EKMELRE---EMGESDWLIVN------KQ-MTALALTFRQSNTSNPDLSRVQ 168
++LR+ E+ + ++++ K + + ++
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF--KI- 184
Query: 169 FRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAIPDFSAGA 228
F W + + + + P + + + NI+ + +I
Sbjct: 185 F--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-----HSIQAELRRL 237
Query: 229 MENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGN----LVTMKWWTDLWL 284
+++ Y L+ +V++ A F L+T +
Sbjct: 238 LKSK---PYENCLLVLLNVQN--------AKAWNA------FNLSCKILLTTR------- 273
Query: 285 NEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPVSVPIGNPS 344
+ +++A + HS L E S LL+ LD P V NP
Sbjct: 274 FKQVTDFLSAAT---TTHISLDHHSMTLTPDEVKS--LLLKYLDCRPQDLPREVLTTNPR 328
Query: 345 EIAQI-------------FDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYRNAE 391
++ I + ++ K L ++ S L N L +YR
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDK---LTTIIESSL----------NVLEPAEYR--- 372
Query: 392 QDDLWESLTEAGHRSKVLPQNLTVKE 417
+++ L+ V P + +
Sbjct: 373 --KMFDRLS-------VFPPSAHIPT 389
Score = 32.1 bits (72), Expect = 0.49
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 9/69 (13%)
Query: 200 LNFFERYFNIRYPLPKQDMVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIAN 259
L F++ Y P ++ + AI DF EN LI + + L +R ++ E
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEEN--LICSKYTDL----LRIALMAEDE--- 577
Query: 260 TIAHELAHQ 268
I E Q
Sbjct: 578 AIFEEAHKQ 586
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 34.6 bits (78), Expect = 0.071
Identities = 17/91 (18%), Positives = 23/91 (25%), Gaps = 11/91 (12%)
Query: 218 MVAIPDFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFG------ 271
MV F N + L+ N + + HE H W
Sbjct: 228 MVVGNGFGGLEHRNSTALLCSRKDLISAHQYEMNDNYQTFLSLCCHEYFHSWNIKTLKPK 287
Query: 272 -----NLVTMKWWTDLWLNEGFATYMAAQAL 297
L + LW EG +Y L
Sbjct: 288 AFLPYQLEKESYTEQLWFYEGMTSYFDDYLL 318
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A
{Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Length = 499
Score = 30.5 bits (69), Expect = 1.1
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 21/107 (19%)
Query: 173 ARRDVIDQVHIL---FDSQVDFAAEAGPEFLNFFERYFNIRYP------LPKQDMVA-IP 222
A V QV I+ + ++ + +R P LPK+++ +
Sbjct: 47 AEMGV--QVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDKFLPKEELWPYLH 104
Query: 223 DFSAGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQW 269
++ + + RE V + Y L +
Sbjct: 105 EYVNKIINFY-----REEGKFPQ-V---VTTHYGDGGLAGVLLKNIK 142
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket,
protein-peptide complex, homodimer, transport protein;
1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB:
1zsz_A 1twb_A 1zsz_B
Length = 111
Score = 27.4 bits (61), Expect = 4.7
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 21 KSAPMSPYLVTSI---ISTNY---YLILQTGYPIVDVTREYGKGGKIV 62
KS+P PYL+ + + N YL++ Y V+V EY K G+IV
Sbjct: 4 KSSPKRPYLLRAYYDWLVDNSFTPYLVVDATYLGVNVPVEYVKDGQIV 51
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 28.4 bits (64), Expect = 4.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 41 ILQTGYPIVDVTREYGKGGKI 61
IL TG +VD+ Y KGGKI
Sbjct: 136 ILVTGIKVVDLLAPYAKGGKI 156
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding
protein, homodimer, transport protein; 1.80A
{Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A
1zsz_C
Length = 129
Score = 27.1 bits (60), Expect = 6.1
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 21 KSAPMSPYLVTSI---ISTNY---YLILQTGYPIVDVTREYGKGGKIV 62
KS+P PYL+ + + N YL++ Y V+V EY K G+IV
Sbjct: 4 KSSPKRPYLLRAYYDWLVDNSFTPYLVVDATYLGVNVPVEYVKDGQIV 51
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 28.1 bits (63), Expect = 6.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 41 ILQTGYPIVDVTREYGKGGKI 61
IL+TG +VD+ Y KGGKI
Sbjct: 134 ILETGIKVVDLLAPYIKGGKI 154
>3vhj_A BFPC; type IV pilus biogenesis, BFPD, membrane, membrane protein;
1.90A {Escherichia coli}
Length = 172
Score = 27.5 bits (60), Expect = 6.8
Identities = 12/108 (11%), Positives = 29/108 (26%), Gaps = 7/108 (6%)
Query: 105 WLPCDQQKSAGKQADQH-DIISNEKMELREEMGESDWLIVNKQ------MTALALTFRQS 157
W ++ + ++ ++S++ + + + +K L
Sbjct: 22 WGSSQDTETTNQALNKSLTLMSSKLYSVIGRFQGEQFAVGDKNIGHKRGQVTLLSAIDFD 81
Query: 158 NTSNPDLSRVQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFER 205
+S L W V + FD +A F +
Sbjct: 82 GSSFCGLFPADNELWLVIGVDKDGMVHFDKSFHSKDDAKKFFFDHVAY 129
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 28.1 bits (63), Expect = 6.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 41 ILQTGYPIVDVTREYGKGGKI 61
I +TG +V++ Y +GGKI
Sbjct: 148 IFETGIKVVNLLAPYRRGGKI 168
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA
decay protein, RNA-binding protein, N domain, MIF4G
domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Length = 248
Score = 27.6 bits (61), Expect = 7.2
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 10/71 (14%)
Query: 199 FLNFFERY---------FNIRYPLPKQDMVAIPDFSAGAMENWGLI-TYRESALLFDDVR 248
FL +F+RY + +P P I D L + ES D+
Sbjct: 178 FLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLE 237
Query: 249 SSIHNEYSIAN 259
+ + N
Sbjct: 238 REFLIKLGLVN 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.412
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,945,348
Number of extensions: 407624
Number of successful extensions: 1000
Number of sequences better than 10.0: 1
Number of HSP's gapped: 947
Number of HSP's successfully gapped: 70
Length of query: 448
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 351
Effective length of database: 3,993,456
Effective search space: 1401703056
Effective search space used: 1401703056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)