RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16137
         (448 letters)



>d3b7sa3 d.92.1.13 (A:209-460) Leukotriene A4 hydrolase catalytic
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 252

 Score =  145 bits (366), Expect = 2e-41
 Identities = 51/271 (18%), Positives = 97/271 (35%), Gaps = 32/271 (11%)

Query: 167 VQFRTWARRDVIDQVHILFDSQVDFAAEAGPEFLNFFERYFNIRYPLPKQDMVAI-PDFS 225
            +   W+ ++ +++          +        L   E      Y   + D++ + P F 
Sbjct: 8   PRTLVWSEKEQVEKS--------AYEFSETESMLKIAEDLG-GPYVWGQYDLLVLPPSFP 58

Query: 226 AGAMENWGLITYRESALLFDDVRSSIHNEYSIANTIAHELAHQWFGNLVTMKWWTDLWLN 285
            G MEN  L     + L           + S++N IAH+++H W GNLVT K W   WLN
Sbjct: 59  YGGMENPCLTFVTPTLL---------AGDKSLSNVIAHQISHSWTGNLVTNKTWDHFWLN 109

Query: 286 EGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIFPLDSLSSSHPV--SVPIGNP 343
           EG   Y+        +       +             L   + +   +HP    V     
Sbjct: 110 EGHTVYLERHICGRLFGEKFRHFNAL------GGWGELQNSVKTFGETHPFTKLVVDLTD 163

Query: 344 SEIAQIFDAISYKKGSFLIRMMNSF-LSGKVFQQGVSNYLNKYQYRNAEQDDLWESLTEA 402
            +    + ++ Y+KG  L+  +       ++F   +  Y+ K+ Y++   DD  + L   
Sbjct: 164 IDPDVAYSSVPYEKGFALLFYLEQLLGGPEIFLGFLKAYVEKFSYKSITTDDWKDFLYSY 223

Query: 403 GHRSKVLPQNLTVKEIMDSWTLQTGYPIVDV 433
                    ++  +   ++W    G P +  
Sbjct: 224 FKDKV----DVLNQVDWNAWLYSPGLPPIKP 250


>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB
          {Haemophilus influenzae [TaxId: 727]}
          Length = 106

 Score = 28.1 bits (63), Expect = 0.86
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)

Query: 22 SAPMSPYLVTS----IISTNY--YLILQTGYPIVDVTREYGKGGKIV 62
          S+P  PYL+ +    ++  ++  YL++   Y  V+V  EY K G+IV
Sbjct: 1  SSPKRPYLLRAYYDWLVDNSFTPYLVVDATYLGVNVPVEYVKDGQIV 47


>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal
           domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 208

 Score = 27.5 bits (60), Expect = 2.7
 Identities = 5/31 (16%), Positives = 9/31 (29%)

Query: 1   MVIKFKNRSTKPGWMWDVFQKSAPMSPYLVT 31
           +          P      F +  P+  YL+ 
Sbjct: 173 IRDGETPDPEDPSRKIYKFIQKVPIPCYLIA 203


>d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp.
           [TaxId: 512]}
          Length = 318

 Score = 27.5 bits (59), Expect = 3.9
 Identities = 21/164 (12%), Positives = 44/164 (26%), Gaps = 1/164 (0%)

Query: 266 AHQWFGNLVTMKWWTDLWLNEGFATYMAAQALNDRYNRPGSKHSWKLLDGEALSNVLLIF 325
              W         W + +L +G++TY+  Q+   R     S  +   L     S++  +F
Sbjct: 71  GMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLGKAPASSLPDLF 130

Query: 326 PLDSLSSSHPVSVPIGNPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKY 385
                ++          P             +     +M+  +L            L+K 
Sbjct: 131 AAGHEAAWAIFRFGPRYPDAFK-DTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKL 189

Query: 386 QYRNAEQDDLWESLTEAGHRSKVLPQNLTVKEIMDSWTLQTGYP 429
             +      L  S +              +  I+     +   P
Sbjct: 190 AIKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKP 233


>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB
          {Escherichia coli [TaxId: 562]}
          Length = 108

 Score = 25.4 bits (56), Expect = 7.3
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 24 PMSPYLVTS----IISTNY--YLILQTGYPIVDVTREYGKGGKIV 62
          P  PYL+ +    ++      +L++    P V V  EY + G+IV
Sbjct: 5  PRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIV 49


>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of
          F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
          Length = 285

 Score = 26.3 bits (58), Expect = 7.5
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 41 ILQTGYPIVDVTREYGKGGKIVRFSQR 67
           +QTG   VD     G+G + +    R
Sbjct: 51 PMQTGIKAVDSLVPIGRGQRELIIGDR 77


>d1w7ba_ a.65.1.1 (A:) Annexin II {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 319

 Score = 26.1 bits (57), Expect = 9.8
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 342 NPSEIAQIFDAISYKKGSFLIRMMNSFLSGKVFQQGVSNYLNKYQYR-NAEQDDLWESLT 400
           +   + ++FD         ++  +   + G   +    N +   Q +     D L++S+ 
Sbjct: 201 SVPHLQKVFDRYKSYSPYDMLESIRKEVKGD-LENAFLNLVQCIQNKPLYFADRLYDSMK 259

Query: 401 EAGHRSKVL 409
             G R KVL
Sbjct: 260 GKGTRDKVL 268


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,725,496
Number of extensions: 79136
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 9
Length of query: 448
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,199,356
Effective search space: 431768160
Effective search space used: 431768160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)