RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16139
(466 letters)
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural
genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus
horikoshii}
Length = 440
Score = 215 bits (549), Expect = 3e-65
Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 15/310 (4%)
Query: 7 IYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFR 66
+ A+ A + + V + +K+I++ + IK VY+I GKA MA IE +
Sbjct: 13 LVGEAIKAADPYRAVLNAVKVSDDKIIVQGKEFEIKGKVYVIALGKAACEMARAIEDILD 72
Query: 67 PQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTED 126
+ G+ +G LK I++ E + +PDE S + + + E+
Sbjct: 73 VED--GVAVTKYGYGKELKR-------IKVIEAG-HPIPDEKSILGAKEALSILNRAREN 122
Query: 127 DVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLA 186
D+V +LISGGGSA P+ +SLED T LL++SGA I E+N VRK +S VKGG+LA
Sbjct: 123 DIVFILISGGGSALFELPEEGISLEDLKLTTDLLLKSGAKIHEINTVRKHISKVKGGKLA 182
Query: 187 EIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTIL 246
+++ + LIISD+VGD L+ IASGPTV + + DA+ I+ Y + KV +SV +
Sbjct: 183 KMIKGTG-IVLIISDVVGDNLEAIASGPTVKDPTTFEDAKRILELYDIWEKVPESVRLHI 241
Query: 247 S----HETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDIC 302
E + NVHN +I +N + +A+ LGF+ I+++ +EG D
Sbjct: 242 ERGLRGEVEETLKEDLPNVHNFLIASNSISCEAIAREAQRLGFKAYIMTTTLEGEAKDAG 301
Query: 303 RGYVDLVAWI 312
+V I
Sbjct: 302 LFIGSIVQEI 311
>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31),
structural genomics, center for structural genomics,
JCSG; 2.53A {Thermotoga maritima} SCOP: c.118.1.1
Length = 429
Score = 203 bits (518), Expect = 8e-61
Identities = 94/311 (30%), Positives = 153/311 (49%), Gaps = 25/311 (8%)
Query: 2 QEIKLIYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEI 61
+ I + ++ AV ++ + + V L+ GKA MA
Sbjct: 21 KLAIEIVKKSIEAVFPDRAVKETLPKLN------------LDRVILVAVGKAAWRMAKAA 68
Query: 62 EAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVK 121
+ + KG++ +G + EI E + +PDE + + T+ + V
Sbjct: 69 YEVLGKKIRKGVVVTKYGHS------EGPIDDFEIYEAG-HPVPDENTIKTTRRVLELVD 121
Query: 122 HCTEDDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVK 181
E+D VL L+SGGGS+ P +SLE+ K L++SGA+I+E+N VRK LS VK
Sbjct: 122 QLNENDTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINTVRKHLSQVK 181
Query: 182 GGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKS 241
GG+ AE V+PA +V+L++SD++GD L IASGP + DA ++ KYG+ + S+S
Sbjct: 182 GGRFAERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGI--ETSES 239
Query: 242 VMTILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDI 301
V + ETP K+ NV H+IGN + AK A+ GF I+++ ++ +
Sbjct: 240 VKRAILQETP----KHLSNVEIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREA 295
Query: 302 CRGYVDLVAWI 312
R ++ +
Sbjct: 296 GRFIASIMKEV 306
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.1 bits (181), Expect = 4e-14
Identities = 67/505 (13%), Positives = 152/505 (30%), Gaps = 141/505 (27%)
Query: 7 IYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVL--IKNNVYLI-----GFGKAVLGMAV 59
+Y + N + A ++ + + ++ + L ++ ++ G GK + + V
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 60 ----EIEAMFRPQRLKGILSVPFG----SVG-------ILKPQFNKNSEIEIRECARN-- 102
+++ F ++ +L+ +I+ +R+
Sbjct: 171 CLSYKVQCKM-----------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 103 --NLPDEAS-----------------C-------QNTQLIQNFVKHC-----TEDDVVLV 131
N+ C QN + F C T V
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 132 LISGGGSACLSSPKSPLSLEDKLKTIKLLVQS-GANIKELNKVRKKLSDVKGGQLAEIV- 189
+S + +S ++L + LL++ ++L + + + +AE +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 190 -YPATL----------VSLIISDIVG--DP------LQDIASGPTVLNED---------- 220
AT ++ II + +P ++ V
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS----VFPPSAHIPTILLSL 394
Query: 221 LW-----SDARDIV---IKYGLQNKVSK----SVMTILSHETPHQDTKYFENVHNHIIGN 268
+W SD +V KY L K K S+ +I + +Y +H I+ +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY--ALHRSIV-D 451
Query: 269 NRAALLGAKWKAES-----------LGFQTVILSSDIEGLGDDICRGYVDLVAWIDQ-LR 316
+ +G + + + ++D +++Q +R
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRMVFLDF-RFLEQKIR 508
Query: 317 KQRT--IQVGKDKNNIKEQDMEQNLQQVA-NQATIDELTKKMKVKNNKKKKKSFDYKSPH 373
T G N + Q ++ + N + L + + K + S +
Sbjct: 509 HDSTAWNASGSILNTL--QQLKFYKPYICDNDPKYERLVN--AILDFLPKIEENLICSKY 564
Query: 374 CNQFLIQIELNSVFVALIEMSAKLV 398
+ L++I L + A+ E + K V
Sbjct: 565 TD--LLRIALMAEDEAIFEEAHKQV 587
Score = 46.4 bits (109), Expect = 2e-05
Identities = 64/481 (13%), Positives = 146/481 (30%), Gaps = 139/481 (28%)
Query: 71 KGILSVPFGSVGILKPQFNKNSEI-EIRECARN-----------NLPDEAS--------- 109
K ILSV + F N + ++++ ++ D S
Sbjct: 19 KDILSV-------FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 110 -CQNTQLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSP-------LSLEDKLKT----- 156
+ +++Q FV+ + ++ S + + P + D+L
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLM-----SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 157 IKLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTV 216
K V ++ K+R+ L +++ PA V + G SG T
Sbjct: 127 AKYNVSR---LQPYLKLRQALLELR---------PAKNVLI-----DGVL----GSGKTW 165
Query: 217 LNEDLWSDARDIVIKYGLQNKV----------SKSVMTILS----------HETPHQDTK 256
+ D+ ++ + K+ ++V+ +L +
Sbjct: 166 VALDV---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 257 YFENVH------NHIIGNNR--AALL-------GAKWKAESLGFQTVILSSDIEGLGDDI 301
+H ++ + LL W A +L + ++ + + D +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK-QVTDFL 281
Query: 302 ---CRGYVDLVAWIDQLRKQRTIQVGKDKNNIKEQDMEQNLQQVANQA-TIDELTKKMKV 357
++ L L + + + QD+ + T + +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-------PREVLTTNPRRLSIIA 334
Query: 358 KNNKKKKKSFD-YKSPHCNQFLIQIELNSVFVALIEMSAKLVRFNDASVVFQDIVK---- 412
++ + ++D +K +C++ IE + ++E + F+ S VF
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMFDRLS-VFPPSAHIPTI 390
Query: 413 ---KLGLDKEELDLDIAENYLVKIKKMGFTDENEVRRAL--------RKAANEPN-HACL 460
+ D + D+ + N L K + E ++ K NE H +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 461 L 461
+
Sbjct: 450 V 450
Score = 41.4 bits (96), Expect = 6e-04
Identities = 37/268 (13%), Positives = 77/268 (28%), Gaps = 75/268 (27%)
Query: 248 HETPHQDTKYFENVHNH--IIGNNRAALLGAKWKAESLGFQTV------ILSS----DIE 295
H H D + E+ + + I+ A + ++ + V ILS I
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFV------DNFDCKDVQDMPKSILSKEEIDHII 55
Query: 296 GLGDDICRGYVDLVAWIDQLRKQRTIQ--VG--------------KDKNNIKEQDMEQNL 339
D + + W +++ +Q V K + +
Sbjct: 56 MSKDAVSGTL--RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 340 QQVANQATIDELTKKMKVKNNKKKKKSFDYKSPHCNQFLIQIELNSVFVALIEM--SAK- 396
+Q +++ K V + K Q L+++ V + + S K
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLK--------LRQALLELRPAK-NVLIDGVLGSGKT 164
Query: 397 -LVRFNDASVVFQDIVK----------KLG-LDKEELDLDIAENYLVKIKKMGFT----- 439
+ V V+ L + E L++ + L +I +
Sbjct: 165 WVA----LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 440 -----DENEVRRALRKAANEPNHA-CLL 461
+ ++ LR+ + CLL
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLL 248
Score = 32.5 bits (73), Expect = 0.35
Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 24/159 (15%)
Query: 314 QLRKQRTIQVGKD--KNNIKEQDMEQNLQQVANQATIDELTKKMKVKNNKKKKKSF---- 367
Q + + + V +D +N +D++ + + ++ ID + + K+
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI---IMSKDAVSGTLRLFWTL 71
Query: 368 -DYKSPHCNQFLIQI-ELNSVFVALIEMSAKLVRFNDASVVFQDIVKKLGLDKEELDLDI 425
+ +F+ ++ +N F+ MS S++ + +++ D+ D +
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQV 125
Query: 426 AENYLVKIKKMGFTDENEVRRALRKAANEPNHACLLLVG 464
Y V + ++R+AL + N +L+ G
Sbjct: 126 FAKYNVSRLQP----YLKLRQALLELRPAKN---VLIDG 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.009
Identities = 57/364 (15%), Positives = 116/364 (31%), Gaps = 136/364 (37%)
Query: 8 YEAAVSAVNGQNLI-QANVHL-EKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMF 65
Y+ + +A Q++ +A+ H + I D ++ NN V + F
Sbjct: 1636 YKTSKAA---QDVWNRADNHFKDTYGFSILD---IVINN-------------PVNLTIHF 1676
Query: 66 RPQRLKGI----LSVPFGSVGILKPQFNKNSEIEIRECARNNL--PDEASC---QNTQ-- 114
++ K I ++ F ++ K + K + EI E + + ++ Q TQ
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFK-EINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 115 -----------LIQNFVKHCTEDDVV----LVLISGGG--SACLSSPKSPLSLEDKLKTI 157
L + D L G +A L+S +S+E ++
Sbjct: 1736 LTLMEKAAFEDLKSKGLI--PADATFAGHSL------GEYAA-LASLADVMSIESLVE-- 1784
Query: 158 KLLVQSGANIKELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDI-ASGPTV 216
+V R G ++ P D +G + A P
Sbjct: 1785 --VV----------FYR--------GMTMQVAVPR--------DELGRSNYGMIAINPGR 1816
Query: 217 LNEDLWSDARDIVIKYGLQNKVSKSVMTILSHETPHQDTKYF-ENVHNHIIGNNRAALLG 275
+ +A V++ +V K T + E V N+ N
Sbjct: 1817 VAASFSQEALQYVVE-----RVGK-------------RTGWLVEIV-NY---NVE----- 1849
Query: 276 AKWKAESLGFQTVILSSDIEGLGDDICRGYVDLVAWIDQLRKQRTIQVGKDKNNIKEQDM 335
Q V + D+ L D + ++ ++ Q+ I + + + ++ +++
Sbjct: 1850 --------NQQYVA-AGDLRAL-D-------TVTNVLNFIKLQK-IDIIELQKSLSLEEV 1891
Query: 336 EQNL 339
E +L
Sbjct: 1892 EGHL 1895
Score = 36.6 bits (84), Expect = 0.019
Identities = 33/261 (12%), Positives = 80/261 (30%), Gaps = 75/261 (28%)
Query: 160 LVQSGANIKEL-NKVRKKLSDVKGGQLAEIV--YPATLV-------SLII----SDIVGD 205
L ++ +++ N+ D G + +IV P L I S ++ +
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 206 PLQDIASGPTVLNEDLWSDARDIVIKY--GLQNK----------VSKSVMTILSHETPHQ 253
+ D + +++ + + GL + + K+ L +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 254 DTKYF------ENVHNHIIGNNRAALLGAKWKAESLGFQTVI-------LSSDIEGLGDD 300
F E AAL A+ + ++++ ++ + D+
Sbjct: 1755 ADATFAGHSLGEY----------AALASL---ADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 301 ICRGYVDLVAWIDQLRKQRTIQVGKDK--NNIKEQDMEQN--LQQVAN------Q----- 345
+ R ++A + R + + E+ ++ L ++ N Q
Sbjct: 1802 LGRSNYGMIA----INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 346 --ATIDELTKKMKVKNNKKKK 364
+D +T + K +K
Sbjct: 1858 DLRALDTVTNVL--NFIKLQK 1876
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin
associated domain, UBA domain, ubiquitin proteosome
pathway, DNA binding protein; NMR {Homo sapiens} SCOP:
a.5.2.1
Length = 49
Score = 32.4 bits (74), Expect = 0.020
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 427 ENYLVKIKKMGFTDENEVRRALRKAANEPNHAC-LLLVGEP 466
E L +I MG+ + V ALR + N P+ A LL G P
Sbjct: 9 ETMLTEIMSMGY-ERERVVAALRASYNNPHRAVEYLLTGIP 48
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.27
Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 59/208 (28%)
Query: 267 GNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYVDLVAWIDQL------RKQRT 320
G+ R +W+ E+ G S + G V++ AWI +
Sbjct: 832 GSART-----RWEMEAFG----EFSLE----------GCVEM-AWIMGFISYHNGNLKGR 871
Query: 321 IQVG----KDKNNIKEQDMEQNL-QQVANQATIDELTKKMKVKNNKKKKKSFDYKSPHCN 375
G K K + ++D++ + + I + ++ F+ +P
Sbjct: 872 PYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPEL-----------FNGYNPEKK 920
Query: 376 QFLIQIELN---SVFVALIEMSAKLVRFNDASVVFQDIVKKL-----GLDKEELDLDIAE 427
+ + ++ + F A E + + + V +I + L L + A
Sbjct: 921 EMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKAL 980
Query: 428 NYLVKIK---KMGF------TDENEVRR 446
+ + G+ ++ + +
Sbjct: 981 RFDRLVAGQIPTGWNAKTYGISDDIISQ 1008
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin
specific protease 5, USP 5, UBA domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 29.3 bits (66), Expect = 0.34
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 427 ENYLVKIKKMGFTDENEVRRALRKAANEPNHACLLLVGEP 466
E+ + I MGF+ ++ +ALR N A +
Sbjct: 10 EDCVTTIVSMGFS-RDQALKALRATNNSLERAVDWIFSHI 48
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei
methyltransferase; cobalamin-independent, surface
entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A
3pph_A 3ppc_A
Length = 789
Score = 32.2 bits (73), Expect = 0.47
Identities = 18/99 (18%), Positives = 36/99 (36%), Gaps = 1/99 (1%)
Query: 245 ILSHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRG 304
+L + P F+ ++ ++G + L+ + + I + + G D R
Sbjct: 243 VLVLDLPEAVQSKFKEAYDALVGADVPELILTTYFGDVRPNLKAIENLPVAGFHFDFVRV 302
Query: 305 YVDLVAWIDQLRKQRTIQVGK-DKNNIKEQDMEQNLQQV 342
L L+ +T+ G D NI + D + V
Sbjct: 303 PEQLDEVASILKDGQTLSAGVVDGRNIWKTDFAKASAVV 341
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 28.3 bits (64), Expect = 1.3
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 96 IRECARNNLPDEASCQNT 113
+ EC ++ C NT
Sbjct: 5 MDECKEPDVCKHGQCINT 22
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.5
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 15/78 (19%)
Query: 309 VAWIDQLRKQRTIQVGKDKNNIKEQDMEQNLQQVANQATIDELTKKMKVKNNKKKKKSFD 368
+A D+L + + +I++ EQ + +D +K M+ + +K KK +
Sbjct: 74 IAQADRLTQ--------EPESIRKWREEQRKRL----QELDAASKVMEQEWREKAKKDLE 121
Query: 369 --YKSPHCNQFLIQIELN 384
+ Q N
Sbjct: 122 EWNQR-QSEQVEKNKINN 138
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex,
signaling protein; NMR {Saccharomyces cerevisiae} SCOP:
a.5.2.1
Length = 58
Score = 27.0 bits (60), Expect = 1.9
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 430 LVKIKKMGFTDENEVRRALRKAANEPNHACLLLVGEP 466
L ++ MGF D + ALR++ A L+
Sbjct: 21 LRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 29.3 bits (66), Expect = 2.7
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 380 QIELNSVFVALIEMSAKLVRFNDASVVFQDIVKKLGLDKEELDLDIAE--NYLVKIKKMG 437
+ +N + + + LG+ +E+ ++ YL + K G
Sbjct: 425 NLLVNQFVK--WDPKEDKHIEVSMPKKLEKMADFLGVSVQEVYDEMLSRKRYLELMLKRG 482
Query: 438 FTDENEVRRALRKAANEP 455
+ EV R + P
Sbjct: 483 IRNYKEVTRYIHAYYRNP 500
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 28.8 bits (64), Expect = 4.1
Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Query: 302 CRGYVDLVAWIDQLRKQRTIQVGKDKNNIKEQDMEQNLQQVANQATIDELTKKMKVKNNK 361
C Y +I + +++ Q K +N + L++ +
Sbjct: 288 CEKYKK---YISEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIEY 344
Query: 362 KKKKSFDYKSPHCN 375
K + S C+
Sbjct: 345 KTYYPYGDYSSICS 358
>2aen_A Hemagglutinin, outer capsid protein VP4, VP8* core; neutralization
antigen, spike protein; 1.60A {Human rotavirus A} PDB:
2dwr_A
Length = 164
Score = 27.6 bits (61), Expect = 6.3
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 335 MEQNLQQVANQATIDELTKKMKVKNNKKKKKSFD-YKSPHCNQFLIQIELNS 385
+E ++ Q Q + K+ V+NN K K F+ +K F + L S
Sbjct: 49 VEPHVSQTNRQYILFGENKQFNVENNSDKWKFFEMFKGSSQGDFSNRRTLTS 100
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine,
hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3
c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Length = 612
Score = 28.3 bits (62), Expect = 6.4
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 198 IISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVS-----KSVMTI-LSHETP 251
I +P+ + T W+ AR+ +I +N S+ + +P
Sbjct: 224 IHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSP 283
Query: 252 HQDTKYFENVHNHIIGNN 269
H + + V ++G +
Sbjct: 284 HATPEEYSQVFEMLLGGD 301
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 28.2 bits (64), Expect = 6.7
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 407 FQDIVKKLGLDKEELDLDIAENYLVKIKKMGFTD----------ENEVRRALRKAAN 453
+++V+ E + ++L ++K+ GF D E E+ R LR +
Sbjct: 466 IEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEI-RKLRDQYD 521
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 27.5 bits (62), Expect = 8.3
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 127 DVVLVLISGGGSACLSSPKSPL---SLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGG 183
+++ L + S L D + K++++ K + K L VK
Sbjct: 209 EMLQALFKYD-----INIYSANLENVLLDDAEIAKMIIEKHVEYKSDSY-TKDLDIVKNN 262
Query: 184 QLAEIVYPATLVSLIISDIV 203
+L EI+ + L+ + V
Sbjct: 263 KLDEIISKNKELRLMYVNCV 282
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 27.3 bits (61), Expect = 8.7
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 127 DVVLVLISGGGSACLSSPKSPL--------SLEDKLKTIKLLVQSGANIKELNK 172
+ L L G S KS + + E + K L+ GA+IK K
Sbjct: 20 EDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK 73
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl
transfer, transferase; 1.53A {Streptomyces wedmorensis}
PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Length = 286
Score = 27.6 bits (61), Expect = 9.5
Identities = 23/194 (11%), Positives = 51/194 (26%), Gaps = 45/194 (23%)
Query: 112 NTQLIQNFVKHCTE----DDVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANI 167
+ + F ++ +VLISGGG+ G
Sbjct: 45 DDDAVTRFARNFARLAETYRGRMVLISGGGAF------------------------GHGA 80
Query: 168 KELNKVRKKLSDVKGGQLAEIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARD 227
+ S + V L + A + +
Sbjct: 81 IRDHDSTHAFSLAGLTEATFEVKKRWAEKLRGIGV-------DAFPLQLAAMCTLRNGIP 133
Query: 228 IVIKYGLQNKVSKSVMTILSHETPHQDTKYFENVHNHIIGNNR-AALLGAKWKAESLGFQ 286
+ L++ + + +L D + E+ ++R +L +
Sbjct: 134 QLRSEVLRDVLDHGALPVL-----AGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLR--- 185
Query: 287 TVILSSDIEGLGDD 300
V+ +D++G+ D
Sbjct: 186 -VVTLTDVDGIVTD 198
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.374
Gapped
Lambda K H
0.267 0.0688 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,851,112
Number of extensions: 424791
Number of successful extensions: 1371
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1357
Number of HSP's successfully gapped: 68
Length of query: 466
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 369
Effective length of database: 3,993,456
Effective search space: 1473585264
Effective search space used: 1473585264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.6 bits)