RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16139
         (466 letters)



>d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical
           protein TM1585) {Thermotoga maritima [TaxId: 2336]}
          Length = 414

 Score =  227 bits (581), Expect = 1e-70
 Identities = 97/306 (31%), Positives = 154/306 (50%), Gaps = 25/306 (8%)

Query: 7   IYEAAVSAVNGQNLIQANVHLEKNKLIIRDQTVLIKNNVYLIGFGKAVLGMAVEIEAMFR 66
           I + ++ AV     ++    L K             + V L+  GKA   MA     +  
Sbjct: 11  IVKKSIEAVFPDRAVKE--TLPKLN----------LDRVILVAVGKAAWRMAKAAYEVLG 58

Query: 67  PQRLKGILSVPFGSVGILKPQFNKNSEIEIRECARNNLPDEASCQNTQLIQNFVKHCTED 126
            +  KG++   +G             + EI E A + +PDE + + T+ +   V    E+
Sbjct: 59  KKIRKGVVVTKYGHSE------GPIDDFEIYE-AGHPVPDENTIKTTRRVLELVDQLNEN 111

Query: 127 DVVLVLISGGGSACLSSPKSPLSLEDKLKTIKLLVQSGANIKELNKVRKKLSDVKGGQLA 186
           D VL L+SGGGS+    P   +SLE+  K    L++SGA+I+E+N VRK LS VKGG+ A
Sbjct: 112 DTVLFLLSGGGSSLFELPLEGVSLEEIQKLTSALLKSGASIEEINTVRKHLSQVKGGRFA 171

Query: 187 EIVYPATLVSLIISDIVGDPLQDIASGPTVLNEDLWSDARDIVIKYGLQNKVSKSVMTIL 246
           E V+PA +V+L++SD++GD L  IASGP   +     DA  ++ KYG+  + S+SV   +
Sbjct: 172 ERVFPAKVVALVLSDVLGDRLDVIASGPAWPDSSTSEDALKVLEKYGI--ETSESVKRAI 229

Query: 247 SHETPHQDTKYFENVHNHIIGNNRAALLGAKWKAESLGFQTVILSSDIEGLGDDICRGYV 306
             ETP    K+  NV  H+IGN +     AK  A+  GF   I+++ ++    +  R   
Sbjct: 230 LQETP----KHLSNVEIHLIGNVQKVCDEAKSLAKEKGFNAEIITTSLDCEAREAGRFIA 285

Query: 307 DLVAWI 312
            ++  +
Sbjct: 286 SIMKEV 291


>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 41

 Score = 31.9 bits (73), Expect = 0.008
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 427 ENYLVKIKKMGFTDENEVRRALRKAANEPNHACLLL 462
           E  L +I  MG+ +   V  ALR + N P+ A   L
Sbjct: 5   ETMLTEIMSMGY-ERERVVAALRASYNNPHRAVEYL 39


>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 73

 Score = 31.3 bits (71), Expect = 0.029
 Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 427 ENYLVKIKKMGFTDENEVRRALRKAANEPNHACLLLVGEP 466
           ++ +  +   GF  E+  R+AL+ +  +   A   +    
Sbjct: 30  QSSVDTLLSFGF-AEDVARKALKASGGDIEKATDWVFNNS 68


>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 61

 Score = 27.8 bits (62), Expect = 0.46
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 430 LVKIKKMGFTDENEVRRALRKAANEPNHACLLLVG 464
           L ++K +GF + +   +AL     + + A  +L+G
Sbjct: 26  LEELKALGFANRDANLQALVATDGDIHAAIEMLLG 60


>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 43

 Score = 27.0 bits (60), Expect = 0.49
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 94  IEIRECARNNLPDEASCQNT 113
           +++ EC   ++     C NT
Sbjct: 3   VDMDECKEPDVCKHGQCINT 22


>d1udxa3 d.242.1.1 (A:341-416) Obg GTP-binding protein C-terminal
           domain {Thermus thermophilus [TaxId: 274]}
          Length = 76

 Score = 26.9 bits (60), Expect = 1.1
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 391 IEMSAKLVRFNDASVV--FQDIVKKLGLDKEELDLDIAENYLVKIKKMGFTDENEV 444
           +E     ++ +        Q++ ++ G++       +    LV+I  + F    EV
Sbjct: 21  VERYLARIKGDLMEAAGYLQEVFRRQGVEAALRAKGVRAGDLVRIGGLEFEYIPEV 76


>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 44

 Score = 24.9 bits (55), Expect = 2.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 430 LVKIKKMGFTDENEVRRALRKAANEPNHACLLLVG 464
           L ++  MGF D +    ALR++      A   L+ 
Sbjct: 9   LRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLN 43


>d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit
           {Thermotoga maritima [TaxId: 2336]}
          Length = 123

 Score = 26.5 bits (58), Expect = 3.8
 Identities = 10/111 (9%), Positives = 37/111 (33%)

Query: 37  QTVLIKNNVYLIGFGKAVLGMAVEIEAMFRPQRLKGILSVPFGSVGILKPQFNKNSEIEI 96
           + V+ +     +   +  L  +++   +   +  + +      +V  L  +     E+  
Sbjct: 1   KRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLVSKSPDYGEVVD 60

Query: 97  RECARNNLPDEASCQNTQLIQNFVKHCTEDDVVLVLISGGGSACLSSPKSP 147
               +    D     N + I++ +KH   +++ +  +       ++     
Sbjct: 61  EVEVQKEGEDLVIAFNPKFIEDVLKHIETEEIEMNFVDSTSPCQINPLDIS 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,645,886
Number of extensions: 78342
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 10
Length of query: 466
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 377
Effective length of database: 1,185,626
Effective search space: 446981002
Effective search space used: 446981002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.9 bits)