BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16142
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/166 (51%), Positives = 107/166 (64%), Gaps = 35/166 (21%)
Query: 274 PTANGPFTDLPVSGVRGVIAKRLLQSKQ---------------VIKLREQMNKALEKRGA 318
P G FTD+P+S +R VIA+RL+QSKQ V+ +R+++NK LE R +
Sbjct: 6 PVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGR-S 64
Query: 319 KLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKK 378
K+S+NDFIIKA+ALA +VPEANSSW DT IR+ H VDVSVAV+T GL TPIVF+A K
Sbjct: 65 KISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIK 124
Query: 379 GLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
G+ I +NDV +LA KA+EGKLQPHEFQ
Sbjct: 125 GVETI-------------------ANDVVSLATKAREGKLQPHEFQ 151
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 39/46 (84%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDR 84
+GGT +ISNLGMFGIKNFSAIINPPQACILA+G+ +LV N++
Sbjct: 151 QGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEK 196
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 69/81 (85%)
Query: 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
+V LPALSPTM MGT+ W KK G+KL+EGDLLAEIETDKAT+GFE EEGYLAKILVP
Sbjct: 29 QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 88
Query: 144 GSKDVPIGKLVCIIVENESDV 164
G++DVP+G +CIIVE E+D+
Sbjct: 89 GTRDVPLGTPLCIIVEKEADI 109
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 69/81 (85%)
Query: 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
+V LPALSPTM MGT+ W KK G+KL+EGDLLAEIETDKAT+GFE EEGYLAKILVP
Sbjct: 11 QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 70
Query: 144 GSKDVPIGKLVCIIVENESDV 164
G++DVP+G +CIIVE E+D+
Sbjct: 71 GTRDVPLGTPLCIIVEKEADI 91
>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex
Length = 87
Score = 119 bits (299), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/81 (70%), Positives = 68/81 (83%)
Query: 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
+V LPALSPTM MGT+ W KK G+KL+EGDLLAEIETD AT+GFE EEGYLAKILVP
Sbjct: 7 QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPE 66
Query: 144 GSKDVPIGKLVCIIVENESDV 164
G++DVP+G +CIIVE E+D+
Sbjct: 67 GTRDVPLGTPLCIIVEKEADI 87
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 66/81 (81%)
Query: 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
+V LP+LSPTM+ GTI W KKEGDK+NEGDL+AE+ETDKAT+GFE+ EE Y+AKILV
Sbjct: 9 KVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAE 68
Query: 144 GSKDVPIGKLVCIIVENESDV 164
G++DVPIG ++CI V D+
Sbjct: 69 GTRDVPIGAIICITVGKPEDI 89
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 57/80 (71%)
Query: 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
++ +P+LSPTME G IV W KKEG+ ++ GD L EIETDKA + + ++G LAKI+V
Sbjct: 9 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 68
Query: 144 GSKDVPIGKLVCIIVENESD 163
GSK++ +G L+ +IVE D
Sbjct: 69 GSKNIRLGSLIGLIVEEGED 88
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 57/80 (71%)
Query: 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143
++ +P+LSPTME G IV W KKEG+ ++ GD L EIETDKA + + ++G LAKI+V
Sbjct: 5 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 64
Query: 144 GSKDVPIGKLVCIIVENESD 163
GSK++ +G L+ +IVE D
Sbjct: 65 GSKNIRLGSLIGLIVEEGED 84
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 35/152 (23%)
Query: 283 LPVSGVRGVIAKRLLQSKQ---------------VIKLREQMNKALEKR-GAKLSINDFI 326
+P++ +R +A+RLL++K ++ LR+Q +A EKR G +L F
Sbjct: 7 VPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFY 66
Query: 327 IKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISND 386
+KA A +R PE N+S + ++ DVS+AV+T +GL TP++ D D G+ DI
Sbjct: 67 VKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADI--- 123
Query: 387 SRSLISFRRPVKFSEESNDVKTLAAKAKEGKL 418
+K LA K ++GKL
Sbjct: 124 ----------------EKKIKELAVKGRDGKL 139
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 40 GGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQR 76
GG +I+N G+FG + IINPPQ+ IL + ++ R
Sbjct: 146 GGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDR 182
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 105/233 (45%), Gaps = 48/233 (20%)
Query: 220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLS---------KASKAGAVAAPSK 270
RV A P ++ A EKG+D+ + G+G G + D+ + A AAP+
Sbjct: 128 RVIAMPSVRKYAREKGVDIRLV-QGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAA 186
Query: 271 SAKPTANGPF--TDLPVSGVRGVIAKRLLQSKQ------------VIKL---REQMNKAL 313
+ T G F T +SG+R IAK ++ SK V KL R++
Sbjct: 187 AKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIA 246
Query: 314 EKRGAKLSINDFIIKATALASRRVPEANSSWQDTF--IREYHSVDVSVAVNTDKGLFTPI 371
++G KL+ +++KA A R P N+S D I + H ++ +A +TD+GL P+
Sbjct: 247 AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPV 306
Query: 372 VFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
+ AD+K + + + ++ LA KA++GKL P E +
Sbjct: 307 IKHADRKPIFAL-------------------AQEINELAEKARDGKLTPGEMK 340
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 87 LPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS 145
LP + + G IV W K GD++NE D+L E++ DKA + +P +G + +ILVP G+
Sbjct: 7 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT 65
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQR-LVREGNDRVALPALS 91
KG + +I+N+G G + F+ +IN P+ IL +G ++++ +VR+G + VA P L+
Sbjct: 340 KGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDG-EIVAAPMLA 392
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 39/174 (22%)
Query: 271 SAKP-TANGPF--TDLPVSGVRGVIAKRLLQSKQ------------VIKL---REQMNKA 312
+AKP T G F T +SG+R IAK ++ SK V KL R++
Sbjct: 2 AAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAI 61
Query: 313 LEKRGAKLSINDFIIKATALASRRVPEANSSWQDTF--IREYHSVDVSVAVNTDKGLFTP 370
++G KL+ +++KA A R P N+S D I + H ++ +A +TD+GL P
Sbjct: 62 AAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVP 121
Query: 371 IVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
++ AD+K + + + ++ LA KA++GKL P E +
Sbjct: 122 VIKHADRKPIFAL-------------------AQEINELAEKARDGKLTPGEMK 156
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQR-LVREGNDRVALPALS 91
KG + +I+N+G G + F+ +IN P+ IL +G ++++ +VR+G + VA P L+
Sbjct: 156 KGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDG-EIVAAPMLA 208
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 16/136 (11%)
Query: 282 DLPVSGVRGVIAKRLLQSKQ---------------VIKLREQMNKALEKR-GAKLSINDF 325
++P++GVR IAK + SKQ +++ R + + +K G L+ F
Sbjct: 20 EIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAF 79
Query: 326 IIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISN 385
IKA A A + P+ NS+W I E+ ++++S+A+ L+ P++ +AD+K + I+
Sbjct: 80 FIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAR 139
Query: 386 DSRSLISFRRPVKFSE 401
+ L R K S+
Sbjct: 140 EISELAGKARNGKLSQ 155
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLV 78
+GGT ++++ G FG IIN PQA IL V S+ +R V
Sbjct: 159 EGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPV 198
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 87 LPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS 145
LP + + G IV W K GD++NE D+L E++ DKA + +P +G + +ILVP G+
Sbjct: 6 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT 64
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 301 QVIKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTF--IREYHSVDVS 358
+++KLRE++ RG KLS F +KA +L + P N+S + I S ++
Sbjct: 66 ELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIG 125
Query: 359 VAVNTDKGLFTPIVFDADKKGLVDISNDSRSL 390
+A++T++GL P V + + + +I+ + L
Sbjct: 126 IAMDTEQGLIVPNVKNVQIRSIFEIATELNRL 157
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 40 GGTVSISNLGMFGIKNFSAIINPPQACILAVGSL 73
GGT ++SN+G G +I PP+ I A+G++
Sbjct: 173 GGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTI 206
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 87 LPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSK 146
LP + + G IV W KEGD + + L E+ TDK T+ +P G + KIL G +
Sbjct: 6 LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREG-Q 64
Query: 147 DVPIG 151
VP+G
Sbjct: 65 VVPVG 69
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPALSPT 93
+G T ++SN G G+ + +IN P+A IL +G++ R V G + VA P ++ T
Sbjct: 154 RGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLT 208
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 23/88 (26%)
Query: 341 NSSWQDTF----IREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRP 396
NS+W D+ + + V + T++GL P+V DA K ++R L S
Sbjct: 86 NSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDK-------NTRELAS---- 134
Query: 397 VKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
V L A+EG L P E +
Sbjct: 135 --------RVAELITGAREGTLTPAELR 154
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 77/157 (49%), Gaps = 36/157 (22%)
Query: 283 LPVSGVRGVIAKRLLQSKQVI---KLREQMN--------KALEKRGAKLSINDFIIKATA 331
L + G+R +I ++ ++KQ++ + E+++ + + R K+++ F+ +
Sbjct: 9 LEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTVTGFLARIVP 68
Query: 332 LASRRVPEANSSWQDT----FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDS 387
++ P N+ + +T +++Y+ ++ +AV+T GL ++ DAD+K +V+I
Sbjct: 69 SILKQYPYLNAIYDETRRVYILKKYY--NIGIAVDTPDGLNVFVIKDADRKSMVEI---- 122
Query: 388 RSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
S ++ A++A+E KLQ E Q
Sbjct: 123 ---------------SAEISDKASRARENKLQLDEVQ 144
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 314 EKRGAKLSINDFIIKATALASRRVPEANSSWQDT---FIREYHSVDVSVAVNTDKGLFTP 370
EK G KL++ ++KA A + +P+ NSS + IR+ + V + AV+T GL P
Sbjct: 64 EKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKY-VHIGFAVDTPDGLLVP 122
Query: 371 IVFDADKK 378
++ + D+K
Sbjct: 123 VIRNVDQK 130
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREG---NDRVALPALSPTME 95
+G +IS+LG G F+ I+N P+ IL V S + V +G R+ LP LS + +
Sbjct: 157 QGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLP-LSLSYD 215
Query: 96 MGTIVSWAKKEGDKLNEGDLLAEIE 120
I A K GDLLA+I
Sbjct: 216 CRVINGAAAARFTK-RLGDLLADIR 239
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 314 EKRGAKLSINDFIIKATALASRRVPEANSSWQDT---FIREYHSVDVSVAVNTDKGLFTP 370
EK G KL++ ++KA A + +P+ NSS + IR+ + V + AV+T GL P
Sbjct: 64 EKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKY-VHIGFAVDTPDGLLVP 122
Query: 371 IVFDADKK 378
++ + D+K
Sbjct: 123 VIRNVDQK 130
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREG---NDRVALPALSPTME 95
+G +I++LG G F+ I+N P+ IL V S + V +G R+ LP LS + +
Sbjct: 157 QGACFTIASLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLP-LSLSYD 215
Query: 96 MGTIVSWAKKEGDKLNEGDLLAEIE 120
I A K GDLLA+I
Sbjct: 216 HRVINGAAAARFTK-RLGDLLADIR 239
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 314 EKRGAKLSINDFIIKATALASRRVPEANSSWQDT---FIREYHSVDVSVAVNTDKGLFTP 370
EK G KL++ ++KA A + +P+ NSS + IR+ + V + AV+T GL P
Sbjct: 64 EKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKY-VHIGFAVDTPDGLLVP 122
Query: 371 IVFDADKK 378
++ + D+K
Sbjct: 123 VIRNVDQK 130
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREG---NDRVALPALSPTME 95
+G +IS+LG G F+ I+N P+ IL V S + V +G R+ LP LS + +
Sbjct: 157 QGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLP-LSLSYD 215
Query: 96 MGTIVSWAKKEGDKLNEGDLLAEIE 120
I A K GDLLA+I
Sbjct: 216 HRVIDGAAAARFTK-RLGDLLADIR 239
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
Length = 243
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 314 EKRGAKLSINDFIIKATALASRRVPEANSSWQDT---FIREYHSVDVSVAVNTDKGLFTP 370
+K G KL++ ++KA A + +P+ NSS + IR+ + V + AV+T GL P
Sbjct: 64 KKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKY-VHIGFAVDTPDGLLVP 122
Query: 371 IVFDADKK 378
++ + D+K
Sbjct: 123 VIRNVDQK 130
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREG---NDRVALPALSPTME 95
+G +IS+LG G F+ I+N P+ IL V S + V +G R+ LP LS + +
Sbjct: 157 QGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLP-LSLSYD 215
Query: 96 MGTIVSWAKKEGDKLNEGDLLAEIE 120
I A K GDLLA+I
Sbjct: 216 HRVINGAAAARFTK-RLGDLLADIR 239
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
+ +P L ++ T+ +W KK GD + ++L EIETDK + +G L +L G
Sbjct: 5 ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64
Query: 145 S 145
+
Sbjct: 65 T 65
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 88 PALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKIL 140
P ++ GT+ +W KK G+ + +L+ +IETDK M +G +A+I+
Sbjct: 7 PTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV 59
>pdb|3M8L|A Chain A, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
pdb|3M8L|C Chain C, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
Length = 534
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 283 LPVSGVRG----VIAKRLLQSKQVIKLREQMNKALEKRGAKLSINDFIIKATALASRRVP 338
LP +G RG + + ++ VIK + N + +LS+N++++ + A R+
Sbjct: 425 LPEAGARGGNHPIFYRNSMKLGYVIKSIDVFNSQILHTSRQLSLNNYLLSPDSFAVYRII 484
Query: 339 EANSSWQD 346
++N SW D
Sbjct: 485 DSNGSWFD 492
>pdb|3M8L|B Chain B, Crystal Structure Analysis Of The Feline Calicivirus
Capsid Protein
Length = 530
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 283 LPVSGVRG----VIAKRLLQSKQVIKLREQMNKALEKRGAKLSINDFIIKATALASRRVP 338
LP +G RG + + ++ VIK + N + +LS+N++++ + A R+
Sbjct: 421 LPEAGARGGNHPIFYRNSMKLGYVIKSIDVFNSQILHTSRQLSLNNYLLSPDSFAVYRII 480
Query: 339 EANSSWQD 346
++N SW D
Sbjct: 481 DSNGSWFD 488
>pdb|3SJS|A Chain A, Crystal Structure Of Ure3-Binding Protein From Entamoeba
Histolytica, (D127a,N129a) Mutant, Native Form
pdb|3SIA|A Chain A, Crystal Structure Of Ure3-Binding Protein, (D127a,N129a)
Mutant, Iodide Phased
Length = 220
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 372 VFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHE 422
+FD D G + S F KF E + ++ + A+A+ G L+PHE
Sbjct: 95 IFDTDFNGHI-------SFYEFMAMYKFMELAYNLFVMNARARSGTLEPHE 138
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 98 TIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKI 139
T+ W KEGD +++ D + E+++DKA++ + +G + K+
Sbjct: 20 TVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61
>pdb|2EQ8|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
Length = 40
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS 260
A+P +RLA E G+DL+ + G+GL G IT D+ +A+
Sbjct: 2 AAPSIRRLARELGVDLTRL-RGTGLAGRITEEDVRRAA 38
>pdb|1S1I|M Chain M, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 146
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 291 VIAKRLLQSKQVIKLR-EQMNKALEKRGAKLSINDFIIKATALASRRVP 338
V+AK+LL ++++ +R E++N + E KL +DF+ KATA R P
Sbjct: 21 VVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGP 69
>pdb|1W4I|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 62
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 217 GGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSK 258
G V A P A+RLA E G+DLS + G+G G IT D+ +
Sbjct: 1 GSREVAAMPAARRLAKELGIDLSKV-KGTGPGGVITVEDVKR 41
>pdb|3JYW|M Chain M, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 178
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 291 VIAKRLLQSKQVIKLR-EQMNKALEKRGAKLSINDFIIKATALASRRVP 338
V+AK+LL ++++ +R E++N + E KL +DF+ KATA R P
Sbjct: 16 VVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGP 64
>pdb|3IZS|K Chain K, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|P Chain P, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|P Chain P, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit
Length = 199
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 291 VIAKRLLQSKQVIKLR-EQMNKALEKRGAKLSINDFIIKATALASRRVP 338
V+AK+LL ++++ +R E++N + E KL +DF+ KATA R P
Sbjct: 22 VVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGP 70
>pdb|2LAV|A Chain A, Nmr Solution Structure Of Human Vaccinia-Related Kinase 1
Length = 361
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 244 GSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGP-FTDL 283
G G FG I AD++ + G+ A +P+ NGP FT+L
Sbjct: 44 GQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTEL 84
>pdb|2KTY|A Chain A, Solution Structure Of Human Vaccinia Related Kinase-1
pdb|2KUL|A Chain A, Solution Structure Of Human Vaccinia Related Kinase
1(Vrk1)
Length = 368
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 244 GSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGP-FTDL 283
G G FG I AD++ + G+ A +P+ NGP FT+L
Sbjct: 44 GQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTEL 84
>pdb|3OP5|A Chain A, Human Vaccinia-Related Kinase 1
pdb|3OP5|B Chain B, Human Vaccinia-Related Kinase 1
pdb|3OP5|C Chain C, Human Vaccinia-Related Kinase 1
pdb|3OP5|D Chain D, Human Vaccinia-Related Kinase 1
Length = 364
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 244 GSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGP-FTDL 283
G G FG I AD++ + G+ A +P+ NGP FT+L
Sbjct: 44 GQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTEL 84
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 107 GDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSK 146
G +N GD+L IE K ++G +A++LV AG +
Sbjct: 1114 GQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ 1153
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 107 GDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSK 146
G +N GD+L IE K ++G +A++LV AG +
Sbjct: 1114 GQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ 1153
>pdb|1W4J|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4K|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 51
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 217 GGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSK 258
G V A P A+RLA E G+D S + G+G G IT D+ +
Sbjct: 1 GSREVAAMPAARRLAKELGIDASKV-KGTGPGGVITVEDVKR 41
>pdb|2JKU|A Chain A, Crystal Structure Of The N-Terminal Region Of The Biotin
Acceptor Domain Of Human Propionyl-Coa Carboxylase
Length = 94
Score = 28.9 bits (63), Expect = 6.1, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 57 SAIINPPQACILAVGSLSQRLVREGNDRVALPALSPTMEM-----GTIVSWAKKEGDKLN 111
S + +P ++AV V EG + + A+ M GT+ S + GD +
Sbjct: 26 SVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVG 85
Query: 112 EGDLLAEIE 120
EGDLL E+E
Sbjct: 86 EGDLLVELE 94
>pdb|3VEF|A Chain A, Rhodococcus Jostii Rha1 Dypb N246h Variant In Complex With
Heme
pdb|3VEF|B Chain B, Rhodococcus Jostii Rha1 Dypb N246h Variant In Complex With
Heme
pdb|3VEF|C Chain C, Rhodococcus Jostii Rha1 Dypb N246h Variant In Complex With
Heme
Length = 353
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 233 EKGLDLSSIGAGSGLFGSITSADLSKA---SKAGAVAAPSKSAKPTANGPFT-DLPVSGV 288
++ LD S+ G+ F + S D+ ++ AGA +AP +P A GP+ L + G+
Sbjct: 291 DRVLDFSTAATGTLFF--VPSRDVLESLGDEPAGAESAPEDPVEPAAAGPYDLSLKIGGL 348
Query: 289 RGV 291
+GV
Sbjct: 349 KGV 351
>pdb|3VED|A Chain A, Rhodococcus Jostii Rha1 Dypb D153h Variant In Complex With
Heme
pdb|3VED|B Chain B, Rhodococcus Jostii Rha1 Dypb D153h Variant In Complex With
Heme
pdb|3VED|C Chain C, Rhodococcus Jostii Rha1 Dypb D153h Variant In Complex With
Heme
Length = 353
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 233 EKGLDLSSIGAGSGLFGSITSADLSKA---SKAGAVAAPSKSAKPTANGPFT-DLPVSGV 288
++ LD S+ G+ F + S D+ ++ AGA +AP +P A GP+ L + G+
Sbjct: 291 DRVLDFSTAATGTLFF--VPSRDVLESLGDEPAGAESAPEDPVEPAAAGPYDLSLKIGGL 348
Query: 289 RGV 291
+GV
Sbjct: 349 KGV 351
>pdb|3QNR|A Chain A, Dypb From Rhodococcus Jostii Rha1, Crystal Form 1
pdb|3QNR|B Chain B, Dypb From Rhodococcus Jostii Rha1, Crystal Form 1
pdb|3QNR|C Chain C, Dypb From Rhodococcus Jostii Rha1, Crystal Form 1
pdb|3QNS|A Chain A, Dypb From Rhodococcus Jostii Rha1, Crystal Form 2
Length = 353
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 233 EKGLDLSSIGAGSGLFGSITSADLSKA---SKAGAVAAPSKSAKPTANGPFT-DLPVSGV 288
++ LD S+ G+ F + S D+ ++ AGA +AP +P A GP+ L + G+
Sbjct: 291 DRVLDFSTAATGTLFF--VPSRDVLESLGDEPAGAESAPEDPVEPAAAGPYDLSLKIGGL 348
Query: 289 RGV 291
+GV
Sbjct: 349 KGV 351
>pdb|3VEE|A Chain A, Rhodococcus Jostii Rha1 Dypb N246a Variant In Complex With
Heme
pdb|3VEE|B Chain B, Rhodococcus Jostii Rha1 Dypb N246a Variant In Complex With
Heme
pdb|3VEE|C Chain C, Rhodococcus Jostii Rha1 Dypb N246a Variant In Complex With
Heme
pdb|4HOV|A Chain A, Dypb N246a In Complex With Manganese
pdb|4HOV|B Chain B, Dypb N246a In Complex With Manganese
pdb|4HOV|C Chain C, Dypb N246a In Complex With Manganese
Length = 353
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 233 EKGLDLSSIGAGSGLFGSITSADLSKA---SKAGAVAAPSKSAKPTANGPFT-DLPVSGV 288
++ LD S+ G+ F + S D+ ++ AGA +AP +P A GP+ L + G+
Sbjct: 291 DRVLDFSTAATGTLFF--VPSRDVLESLGDEPAGAESAPEDPVEPAAAGPYDLSLKIGGL 348
Query: 289 RGV 291
+GV
Sbjct: 349 KGV 351
>pdb|3VEG|A Chain A, Rhodococcus Jostii Rha1 Dypb R244l Variant In Complex With
Heme
pdb|3VEG|B Chain B, Rhodococcus Jostii Rha1 Dypb R244l Variant In Complex With
Heme
pdb|3VEG|C Chain C, Rhodococcus Jostii Rha1 Dypb R244l Variant In Complex With
Heme
Length = 353
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 233 EKGLDLSSIGAGSGLFGSITSADLSKA---SKAGAVAAPSKSAKPTANGPFT-DLPVSGV 288
++ LD S+ G+ F + S D+ ++ AGA +AP +P A GP+ L + G+
Sbjct: 291 DRVLDFSTAATGTLFF--VPSRDVLESLGDEPAGAESAPEDPVEPAAAGPYDLSLKIGGL 348
Query: 289 RGV 291
+GV
Sbjct: 349 KGV 351
>pdb|3VEC|A Chain A, Rhodococcus Jostii Rha1 Dypb D153a Variant In Complex With
Heme
pdb|3VEC|B Chain B, Rhodococcus Jostii Rha1 Dypb D153a Variant In Complex With
Heme
pdb|3VEC|C Chain C, Rhodococcus Jostii Rha1 Dypb D153a Variant In Complex With
Heme
Length = 353
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 233 EKGLDLSSIGAGSGLFGSITSADLSKA---SKAGAVAAPSKSAKPTANGPFT-DLPVSGV 288
++ LD S+ G+ F + S D+ ++ AGA +AP +P A GP+ L + G+
Sbjct: 291 DRVLDFSTAATGTLFF--VPSRDVLESLGDEPAGAESAPEDPVEPAAAGPYDLSLKIGGL 348
Query: 289 RGV 291
+GV
Sbjct: 349 KGV 351
>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd)
Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid
Dehydrogenase
Length = 58
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 218 GTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADL 256
G + A+P +RLA E + LS + GSG G I D+
Sbjct: 5 GRKTLATPAVRRLAMENNIKLSEV-VGSGKDGRILKEDI 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,642,380
Number of Sequences: 62578
Number of extensions: 410903
Number of successful extensions: 1236
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1165
Number of HSP's gapped (non-prelim): 83
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (25.0 bits)