Query psy16142
Match_columns 426
No_of_seqs 320 out of 2732
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 21:55:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0557|consensus 100.0 5.5E-60 1.2E-64 476.1 23.8 319 79-425 35-382 (470)
2 PLN02744 dihydrolipoyllysine-r 100.0 2.7E-58 5.8E-63 483.5 29.9 326 78-425 108-451 (539)
3 PRK05704 dihydrolipoamide succ 100.0 2.3E-58 5.1E-63 473.7 28.4 295 83-425 3-320 (407)
4 TIGR01347 sucB 2-oxoglutarate 100.0 8.2E-58 1.8E-62 468.8 28.6 294 84-425 2-316 (403)
5 TIGR02927 SucB_Actino 2-oxoglu 100.0 1E-57 2.2E-62 488.4 28.9 322 83-425 136-497 (590)
6 TIGR01349 PDHac_trf_mito pyruv 100.0 4.1E-56 9E-61 460.8 29.8 317 85-425 2-347 (435)
7 COG0508 AceF Pyruvate/2-oxoglu 100.0 3.2E-56 7E-61 457.5 25.6 296 83-426 3-319 (404)
8 TIGR01348 PDHac_trf_long pyruv 100.0 1.3E-55 2.9E-60 468.7 29.0 311 83-425 117-461 (546)
9 PLN02528 2-oxoisovalerate dehy 100.0 1.9E-54 4E-59 446.2 26.9 294 85-425 1-327 (416)
10 PRK11854 aceF pyruvate dehydro 100.0 5.6E-52 1.2E-56 448.2 28.7 307 82-425 206-548 (633)
11 PRK11855 dihydrolipoamide acet 100.0 2.3E-50 5E-55 429.8 28.5 307 83-425 120-462 (547)
12 PRK11856 branched-chain alpha- 100.0 2.3E-48 5.1E-53 401.7 28.5 301 84-425 4-325 (411)
13 PLN02226 2-oxoglutarate dehydr 100.0 7.2E-48 1.6E-52 397.5 24.9 269 83-425 92-376 (463)
14 PTZ00144 dihydrolipoamide succ 100.0 4.6E-47 1E-51 388.8 24.4 272 82-425 44-331 (418)
15 KOG0558|consensus 100.0 1.7E-47 3.7E-52 371.2 19.6 291 83-425 65-385 (474)
16 KOG0559|consensus 100.0 1.6E-45 3.6E-50 359.0 20.0 282 82-425 72-370 (457)
17 PRK14843 dihydrolipoamide acet 100.0 3.8E-41 8.2E-46 339.4 18.6 188 218-425 46-262 (347)
18 PRK11857 dihydrolipoamide acet 100.0 6.6E-41 1.4E-45 332.5 18.1 185 221-425 2-220 (306)
19 PF00198 2-oxoacid_dh: 2-oxoac 100.0 1.3E-29 2.8E-34 243.0 15.1 129 278-425 2-146 (231)
20 PRK12270 kgd alpha-ketoglutara 99.9 2.1E-24 4.6E-29 233.5 20.6 127 280-425 115-265 (1228)
21 PF00364 Biotin_lipoyl: Biotin 99.6 3.7E-16 8E-21 124.1 4.5 73 84-157 2-74 (74)
22 PRK14843 dihydrolipoamide acet 99.6 2.1E-16 4.6E-21 159.9 1.2 98 20-117 234-346 (347)
23 PRK14875 acetoin dehydrogenase 99.6 2.7E-15 5.9E-20 150.9 8.1 77 83-160 3-79 (371)
24 TIGR02927 SucB_Actino 2-oxoglu 99.6 7.9E-16 1.7E-20 165.8 1.7 101 20-120 469-589 (590)
25 PRK11857 dihydrolipoamide acet 99.6 7.7E-16 1.7E-20 153.4 1.2 98 20-117 192-304 (306)
26 PLN02226 2-oxoglutarate dehydr 99.5 8.1E-16 1.7E-20 159.8 0.9 98 20-117 348-460 (463)
27 PRK06748 hypothetical protein; 99.5 7.3E-15 1.6E-19 118.8 5.9 62 97-159 13-75 (83)
28 KOG0559|consensus 99.5 1.4E-15 3E-20 149.9 0.6 98 20-117 342-454 (457)
29 PF00198 2-oxoacid_dh: 2-oxoac 99.5 7.4E-16 1.6E-20 148.0 -1.3 98 20-117 118-230 (231)
30 PTZ00144 dihydrolipoamide succ 99.5 2.4E-15 5.1E-20 155.2 0.9 98 20-117 303-415 (418)
31 TIGR01347 sucB 2-oxoglutarate 99.5 2.6E-15 5.6E-20 154.9 0.5 98 20-117 288-400 (403)
32 PRK05704 dihydrolipoamide succ 99.5 3E-15 6.5E-20 154.7 0.5 98 20-117 292-404 (407)
33 PLN02528 2-oxoisovalerate dehy 99.5 3E-15 6.6E-20 155.1 0.5 98 20-117 299-412 (416)
34 TIGR01349 PDHac_trf_mito pyruv 99.5 6.8E-15 1.5E-19 153.3 1.0 98 20-117 319-434 (435)
35 PLN02744 dihydrolipoyllysine-r 99.5 9E-15 2E-19 154.9 1.4 98 20-117 423-538 (539)
36 TIGR01348 PDHac_trf_long pyruv 99.5 1E-14 2.2E-19 156.1 1.2 98 20-117 433-545 (546)
37 COG0511 AccB Biotin carboxyl c 99.4 2.1E-13 4.6E-18 121.4 5.0 61 97-158 79-139 (140)
38 PRK11892 pyruvate dehydrogenas 99.4 2E-12 4.2E-17 135.7 10.9 83 83-165 3-85 (464)
39 PRK05889 putative acetyl-CoA c 99.4 7.5E-13 1.6E-17 104.2 5.3 61 97-158 11-71 (71)
40 KOG0558|consensus 99.3 3.8E-13 8.1E-18 132.2 1.8 98 20-117 357-470 (474)
41 PF02817 E3_binding: e3 bindin 99.3 1.4E-12 3E-17 90.7 3.6 38 220-258 2-39 (39)
42 COG0508 AceF Pyruvate/2-oxoglu 99.3 5.6E-13 1.2E-17 137.8 2.1 98 20-117 290-402 (404)
43 PRK08225 acetyl-CoA carboxylas 99.2 9.8E-12 2.1E-16 97.4 5.3 61 97-158 10-70 (70)
44 cd06663 Biotinyl_lipoyl_domain 99.2 1.1E-11 2.5E-16 97.4 5.7 72 85-157 2-73 (73)
45 PRK11854 aceF pyruvate dehydro 99.2 2.3E-11 4.9E-16 132.6 6.8 74 84-160 4-77 (633)
46 PRK12270 kgd alpha-ketoglutara 99.2 6.2E-12 1.3E-16 137.7 2.3 97 20-116 237-354 (1228)
47 PRK06549 acetyl-CoA carboxylas 99.2 4.2E-11 9E-16 105.0 5.5 60 97-157 70-129 (130)
48 PRK05641 putative acetyl-CoA c 99.1 1.3E-10 2.7E-15 104.9 5.3 60 97-157 93-152 (153)
49 TIGR00531 BCCP acetyl-CoA carb 99.1 1.2E-10 2.5E-15 105.6 4.9 75 83-158 81-156 (156)
50 KOG0557|consensus 99.1 3.3E-11 7.1E-16 123.2 1.2 98 20-117 354-469 (470)
51 PRK06302 acetyl-CoA carboxylas 99.0 1.6E-10 3.6E-15 104.6 4.9 76 82-158 79-155 (155)
52 PRK11856 branched-chain alpha- 99.0 4.2E-11 9.1E-16 124.4 0.9 99 19-117 296-409 (411)
53 PRK07051 hypothetical protein; 99.0 3.6E-10 7.8E-15 91.1 5.5 57 101-158 23-79 (80)
54 PLN02983 biotin carboxyl carri 99.0 2.6E-10 5.7E-15 109.8 5.2 57 101-158 217-273 (274)
55 PRK14042 pyruvate carboxylase 99.0 6.1E-10 1.3E-14 119.9 6.0 62 97-159 534-595 (596)
56 PRK11855 dihydrolipoamide acet 99.0 8.6E-10 1.9E-14 118.5 6.6 76 84-161 4-79 (547)
57 cd06850 biotinyl_domain The bi 98.9 1E-09 2.2E-14 83.9 5.0 60 97-157 8-67 (67)
58 COG4770 Acetyl/propionyl-CoA c 98.9 8.1E-10 1.8E-14 115.4 4.5 69 81-158 576-644 (645)
59 TIGR02712 urea_carbox urea car 98.8 4.6E-09 1E-13 121.6 5.3 61 97-158 1141-1201(1201)
60 TIGR01108 oadA oxaloacetate de 98.8 4.8E-09 1E-13 113.1 4.0 57 97-154 526-582 (582)
61 PRK14040 oxaloacetate decarbox 98.7 1.3E-08 2.7E-13 110.1 5.5 60 97-157 533-592 (593)
62 TIGR01235 pyruv_carbox pyruvat 98.7 1.5E-08 3.4E-13 116.4 5.5 61 97-158 1083-1143(1143)
63 cd06849 lipoyl_domain Lipoyl d 98.7 4.9E-08 1.1E-12 74.2 6.2 72 85-157 3-74 (74)
64 PRK09282 pyruvate carboxylase 98.6 8.3E-08 1.8E-12 103.9 7.4 61 97-158 531-591 (592)
65 PRK12999 pyruvate carboxylase; 98.6 1.1E-07 2.4E-12 109.7 7.7 61 97-158 1085-1145(1146)
66 COG1038 PycA Pyruvate carboxyl 98.4 3.2E-07 6.8E-12 99.2 5.5 61 97-158 1088-1148(1149)
67 KOG0369|consensus 98.1 3.9E-06 8.4E-11 89.4 4.9 69 81-158 1107-1175(1176)
68 KOG0238|consensus 98.0 5.2E-06 1.1E-10 86.3 4.3 61 97-158 610-670 (670)
69 cd06848 GCS_H Glycine cleavage 97.8 1.5E-05 3.3E-10 66.3 2.6 46 100-145 33-78 (96)
70 KOG0368|consensus 97.5 8.7E-05 1.9E-09 84.9 5.2 66 95-162 692-757 (2196)
71 TIGR03077 not_gcvH glycine cle 97.5 6E-05 1.3E-09 64.5 2.1 42 104-145 38-79 (110)
72 PRK00624 glycine cleavage syst 97.3 0.00016 3.5E-09 62.2 2.4 36 105-140 41-76 (114)
73 PF13533 Biotin_lipoyl_2: Biot 97.2 0.00038 8.2E-09 51.0 3.9 35 126-161 3-37 (50)
74 PRK01202 glycine cleavage syst 97.1 0.00046 1E-08 60.6 3.9 59 100-160 42-107 (127)
75 PRK13380 glycine cleavage syst 97.0 0.00038 8.3E-09 62.4 2.2 49 97-145 44-93 (144)
76 TIGR00998 8a0101 efflux pump m 96.9 0.0014 3E-08 65.8 5.2 36 126-162 205-240 (334)
77 PRK09783 copper/silver efflux 96.8 0.0019 4.2E-08 67.3 6.0 66 96-162 131-245 (409)
78 TIGR01730 RND_mfp RND family e 96.7 0.0015 3.2E-08 64.7 4.4 65 96-161 34-169 (322)
79 TIGR00527 gcvH glycine cleavag 96.7 0.00079 1.7E-08 59.1 2.0 41 104-144 44-84 (127)
80 PRK10559 p-hydroxybenzoic acid 96.6 0.0027 5.9E-08 63.7 5.0 65 96-161 55-189 (310)
81 PRK10476 multidrug resistance 96.5 0.0031 6.8E-08 64.0 5.2 35 126-161 209-243 (346)
82 PRK05889 putative acetyl-CoA c 96.5 0.0055 1.2E-07 47.9 5.0 35 126-161 3-37 (71)
83 PRK03598 putative efflux pump 96.2 0.0051 1.1E-07 62.0 4.7 35 126-161 204-238 (331)
84 PRK15136 multidrug efflux syst 96.1 0.0072 1.6E-07 62.6 5.2 36 126-162 216-251 (390)
85 PRK09578 periplasmic multidrug 96.0 0.0075 1.6E-07 62.2 4.9 65 96-161 71-208 (385)
86 PRK06748 hypothetical protein; 95.9 0.013 2.8E-07 47.7 4.6 33 128-161 7-40 (83)
87 PF01597 GCV_H: Glycine cleava 95.5 0.0082 1.8E-07 52.3 2.3 39 104-142 39-77 (122)
88 PRK09859 multidrug efflux syst 95.4 0.02 4.4E-07 59.0 4.9 64 96-160 69-205 (385)
89 PRK12784 hypothetical protein; 95.4 0.029 6.4E-07 44.6 4.6 64 96-160 13-77 (84)
90 PRK15030 multidrug efflux syst 95.3 0.021 4.6E-07 59.2 4.9 64 96-160 73-209 (397)
91 cd06850 biotinyl_domain The bi 95.2 0.029 6.4E-07 42.2 4.3 32 128-160 2-33 (67)
92 PRK08225 acetyl-CoA carboxylas 95.2 0.04 8.8E-07 42.7 5.0 34 127-161 3-36 (70)
93 COG0509 GcvH Glycine cleavage 95.1 0.011 2.4E-07 51.9 1.8 38 103-140 46-83 (131)
94 PRK11578 macrolide transporter 95.1 0.026 5.5E-07 57.9 4.7 34 127-161 185-221 (370)
95 COG0511 AccB Biotin carboxyl c 95.1 0.031 6.7E-07 49.8 4.5 36 124-160 69-104 (140)
96 PRK11556 multidrug efflux syst 94.7 0.034 7.3E-07 58.2 4.3 63 96-159 95-230 (415)
97 PF13437 HlyD_3: HlyD family s 94.4 0.064 1.4E-06 44.5 4.6 34 127-161 1-34 (105)
98 TIGR03309 matur_yqeB selenium- 94.4 0.06 1.3E-06 52.5 4.9 56 100-161 175-230 (256)
99 PRK06549 acetyl-CoA carboxylas 94.0 0.094 2E-06 46.2 5.0 36 125-161 61-96 (130)
100 TIGR02971 heterocyst_DevB ABC 93.9 0.077 1.7E-06 53.2 5.0 33 127-161 206-238 (327)
101 PF00302 CAT: Chloramphenicol 93.7 0.73 1.6E-05 43.8 10.7 83 319-421 47-132 (206)
102 PF13375 RnfC_N: RnfC Barrel s 93.6 0.12 2.6E-06 43.6 4.7 46 97-143 39-84 (101)
103 PF12700 HlyD_2: HlyD family s 93.6 0.034 7.3E-07 55.2 1.6 33 128-161 137-194 (328)
104 PF13533 Biotin_lipoyl_2: Biot 93.5 0.03 6.4E-07 40.9 0.8 30 96-125 10-39 (50)
105 PF00364 Biotin_lipoyl: Biotin 93.4 0.11 2.3E-06 41.0 3.9 35 127-162 2-42 (74)
106 PRK05641 putative acetyl-CoA c 92.8 0.16 3.5E-06 46.0 4.7 35 126-161 85-119 (153)
107 PF00529 HlyD: HlyD family sec 92.7 0.083 1.8E-06 51.8 2.9 34 126-160 2-35 (305)
108 PRK07051 hypothetical protein; 92.4 0.19 4.2E-06 40.2 4.1 37 124-161 2-45 (80)
109 cd06250 M14_PaAOTO_like An unc 92.1 0.18 3.9E-06 51.8 4.6 57 98-157 298-358 (359)
110 TIGR00998 8a0101 efflux pump m 92.0 0.16 3.4E-06 51.0 3.9 35 125-160 42-76 (334)
111 cd06253 M14_ASTE_ASPA_like_3 A 91.7 0.22 4.9E-06 49.8 4.6 56 99-157 239-297 (298)
112 PRK10476 multidrug resistance 90.4 0.3 6.4E-06 49.6 4.2 40 118-160 43-82 (346)
113 COG3608 Predicted deacylase [G 90.4 0.35 7.6E-06 49.0 4.6 61 96-159 263-326 (331)
114 TIGR02971 heterocyst_DevB ABC 90.3 0.28 6.2E-06 49.1 3.9 41 119-160 7-50 (327)
115 COG4845 Chloramphenicol O-acet 90.2 1.4 3.1E-05 41.6 8.0 76 303-385 40-116 (219)
116 cd06251 M14_ASTE_ASPA_like_1 A 90.2 0.41 9E-06 47.5 4.9 55 100-157 230-286 (287)
117 TIGR02994 ectoine_eutE ectoine 90.1 0.39 8.4E-06 48.8 4.6 55 100-157 266-324 (325)
118 cd06252 M14_ASTE_ASPA_like_2 A 89.9 0.48 1E-05 47.8 5.1 58 98-158 253-314 (316)
119 TIGR01730 RND_mfp RND family e 89.7 0.34 7.3E-06 47.8 3.8 35 125-160 26-60 (322)
120 PRK10559 p-hydroxybenzoic acid 89.2 0.37 8E-06 48.4 3.7 35 126-161 48-82 (310)
121 PRK15136 multidrug efflux syst 89.2 0.37 8E-06 50.0 3.7 35 125-160 61-95 (390)
122 PRK03598 putative efflux pump 88.4 0.49 1.1E-05 47.6 4.0 35 125-160 43-77 (331)
123 PRK13757 chloramphenicol acety 87.6 3.6 7.8E-05 39.5 9.1 83 318-420 51-135 (219)
124 TIGR00999 8a0102 Membrane Fusi 87.3 0.81 1.8E-05 44.0 4.6 36 125-161 88-123 (265)
125 TIGR01843 type_I_hlyD type I s 87.3 0.57 1.2E-05 48.2 3.8 43 118-161 36-78 (423)
126 TIGR03794 NHPM_micro_HlyD NHPM 87.0 0.67 1.5E-05 48.4 4.1 36 125-161 58-93 (421)
127 TIGR01000 bacteriocin_acc bact 87.0 0.61 1.3E-05 49.3 3.8 36 125-161 59-94 (457)
128 PF12700 HlyD_2: HlyD family s 86.8 0.64 1.4E-05 46.0 3.7 35 124-160 20-54 (328)
129 PRK11578 macrolide transporter 86.7 0.73 1.6E-05 47.2 4.1 40 118-159 55-94 (370)
130 TIGR00531 BCCP acetyl-CoA carb 86.2 0.97 2.1E-05 41.0 4.2 35 126-161 81-122 (156)
131 PRK09859 multidrug efflux syst 86.1 0.85 1.8E-05 47.0 4.3 44 115-160 52-95 (385)
132 PLN02983 biotin carboxyl carri 86.0 0.97 2.1E-05 44.4 4.3 37 125-162 197-240 (274)
133 PRK11556 multidrug efflux syst 86.0 0.86 1.9E-05 47.7 4.3 44 115-160 78-121 (415)
134 PRK15030 multidrug efflux syst 85.9 0.85 1.8E-05 47.3 4.2 41 118-160 59-99 (397)
135 PRK14042 pyruvate carboxylase 85.9 1 2.2E-05 49.4 4.8 35 126-161 526-560 (596)
136 PRK09578 periplasmic multidrug 85.7 0.75 1.6E-05 47.4 3.7 42 117-160 56-97 (385)
137 cd06254 M14_ASTE_ASPA_like_4 A 85.7 0.69 1.5E-05 45.9 3.2 31 125-157 223-253 (288)
138 TIGR01235 pyruv_carbox pyruvat 85.2 1.5 3.2E-05 51.7 6.0 62 98-161 1048-1109(1143)
139 PF05896 NQRA: Na(+)-transloca 84.6 0.83 1.8E-05 44.8 3.1 41 100-143 41-83 (257)
140 TIGR01108 oadA oxaloacetate de 83.4 1.5 3.3E-05 48.0 4.8 37 125-162 517-553 (582)
141 PRK06302 acetyl-CoA carboxylas 83.4 1.5 3.4E-05 39.7 4.2 35 126-161 80-121 (155)
142 PRK09783 copper/silver efflux 83.4 1.3 2.8E-05 46.2 4.2 44 116-160 113-158 (409)
143 COG4770 Acetyl/propionyl-CoA c 81.8 1.6 3.5E-05 47.0 4.2 34 126-160 576-609 (645)
144 PRK14040 oxaloacetate decarbox 81.8 1.9 4.1E-05 47.4 4.8 36 125-161 524-559 (593)
145 TIGR03794 NHPM_micro_HlyD NHPM 80.8 2 4.3E-05 44.9 4.4 33 126-159 254-286 (421)
146 TIGR01843 type_I_hlyD type I s 80.5 2.1 4.6E-05 43.9 4.5 36 124-160 270-306 (423)
147 COG1566 EmrA Multidrug resista 80.4 1.8 3.9E-05 44.4 3.9 37 125-162 208-244 (352)
148 KOG3373|consensus 79.7 1 2.2E-05 41.0 1.5 42 104-145 88-129 (172)
149 PRK09282 pyruvate carboxylase 79.7 2.4 5.1E-05 46.6 4.7 36 125-161 522-557 (592)
150 PRK09439 PTS system glucose-sp 78.8 2.6 5.7E-05 38.8 4.0 21 138-159 105-125 (169)
151 cd00210 PTS_IIA_glc PTS_IIA, P 78.6 3.3 7.2E-05 36.2 4.4 21 138-159 83-103 (124)
152 TIGR00830 PTBA PTS system, glu 78.2 3.4 7.3E-05 36.0 4.3 21 138-159 83-103 (121)
153 COG1566 EmrA Multidrug resista 77.5 2.7 5.9E-05 43.2 4.1 36 125-161 53-88 (352)
154 TIGR01936 nqrA NADH:ubiquinone 77.4 1.9 4.1E-05 45.8 3.0 44 97-141 38-81 (447)
155 TIGR02712 urea_carbox urea car 77.0 3.1 6.6E-05 49.5 4.9 37 125-162 1132-1168(1201)
156 PF07831 PYNP_C: Pyrimidine nu 76.8 1.2 2.6E-05 35.4 1.0 27 95-121 29-55 (75)
157 PF09891 DUF2118: Uncharacteri 76.7 2.1 4.6E-05 38.6 2.7 45 96-140 88-133 (150)
158 COG2190 NagE Phosphotransferas 76.4 3.4 7.3E-05 37.6 3.9 25 134-159 86-110 (156)
159 PF00358 PTS_EIIA_1: phosphoen 76.3 3.2 6.9E-05 36.7 3.7 21 138-159 87-107 (132)
160 PRK05352 Na(+)-translocating N 75.0 2.1 4.5E-05 45.4 2.6 44 97-141 39-82 (448)
161 PRK14875 acetoin dehydrogenase 74.3 3.5 7.5E-05 41.2 3.9 29 132-161 15-43 (371)
162 cd06663 Biotinyl_lipoyl_domain 74.2 5.3 0.00012 30.7 4.1 29 132-161 12-40 (73)
163 PRK12784 hypothetical protein; 73.7 4.2 9.1E-05 32.6 3.3 39 123-162 2-41 (84)
164 TIGR01945 rnfC electron transp 73.5 2.7 5.8E-05 44.4 2.9 42 98-140 41-82 (435)
165 PF04952 AstE_AspA: Succinylgl 72.8 5.5 0.00012 39.1 4.9 58 98-158 229-290 (292)
166 COG0845 AcrA Membrane-fusion p 72.5 4.1 9E-05 40.0 3.9 35 125-160 66-100 (372)
167 PRK12999 pyruvate carboxylase; 71.1 4.8 0.0001 47.6 4.5 36 125-161 1076-1111(1146)
168 PRK05035 electron transport co 70.5 4.7 0.0001 45.1 4.1 43 97-140 46-88 (695)
169 cd06849 lipoyl_domain Lipoyl d 68.1 9.8 0.00021 27.7 4.3 30 130-160 11-40 (74)
170 COG4656 RnfC Predicted NADH:ub 65.5 3.9 8.4E-05 43.8 2.1 42 97-140 42-83 (529)
171 TIGR01000 bacteriocin_acc bact 62.5 7.8 0.00017 41.0 3.7 35 125-160 316-351 (457)
172 PF00529 HlyD: HlyD family sec 61.9 3 6.5E-05 40.7 0.4 32 95-126 8-39 (305)
173 TIGR03309 matur_yqeB selenium- 61.6 9.1 0.0002 37.6 3.7 57 101-159 134-196 (256)
174 COG1038 PycA Pyruvate carboxyl 60.5 6.7 0.00015 44.2 2.8 34 126-160 1080-1113(1149)
175 PF01551 Peptidase_M23: Peptid 59.3 15 0.00033 29.7 4.2 24 136-160 52-75 (96)
176 cd06255 M14_ASTE_ASPA_like_5 A 57.8 13 0.00028 37.0 4.2 34 125-160 231-264 (293)
177 KOG0369|consensus 57.7 8.4 0.00018 42.6 2.9 34 126-160 1107-1140(1176)
178 cd06255 M14_ASTE_ASPA_like_5 A 57.5 10 0.00022 37.8 3.4 42 98-139 240-283 (293)
179 KOG0238|consensus 57.1 9.4 0.0002 40.9 3.1 34 126-160 602-635 (670)
180 COG1726 NqrA Na+-transporting 57.0 8.7 0.00019 39.4 2.7 52 101-158 42-95 (447)
181 PF07831 PYNP_C: Pyrimidine nu 56.5 15 0.00033 29.1 3.5 29 131-162 30-58 (75)
182 cd06251 M14_ASTE_ASPA_like_1 A 55.0 16 0.00034 36.3 4.2 34 125-160 219-252 (287)
183 TIGR02644 Y_phosphoryl pyrimid 54.9 16 0.00035 38.3 4.4 40 120-160 328-398 (405)
184 TIGR02645 ARCH_P_rylase putati 54.7 18 0.0004 38.8 4.8 42 119-161 407-472 (493)
185 cd06254 M14_ASTE_ASPA_like_4 A 53.5 17 0.00037 36.0 4.3 20 100-119 234-253 (288)
186 cd06253 M14_ASTE_ASPA_like_3 A 53.5 16 0.00034 36.6 4.0 34 125-160 229-262 (298)
187 cd06250 M14_PaAOTO_like An unc 53.1 17 0.00037 37.4 4.3 33 126-160 290-322 (359)
188 PRK04350 thymidine phosphoryla 52.8 20 0.00044 38.5 4.8 42 119-161 399-464 (490)
189 PF14821 Thr_synth_N: Threonin 52.3 13 0.00028 29.8 2.5 47 362-413 23-78 (79)
190 TIGR03327 AMP_phos AMP phospho 51.7 21 0.00045 38.5 4.7 41 120-161 409-473 (500)
191 TIGR02643 T_phosphoryl thymidi 50.5 22 0.00047 37.7 4.6 39 122-161 336-405 (437)
192 PRK05820 deoA thymidine phosph 49.8 21 0.00045 37.9 4.3 40 121-161 336-406 (440)
193 PRK06078 pyrimidine-nucleoside 49.7 19 0.00042 38.0 4.1 39 121-160 331-400 (434)
194 TIGR02994 ectoine_eutE ectoine 48.8 22 0.00048 36.1 4.3 33 125-159 255-287 (325)
195 cd06252 M14_ASTE_ASPA_like_2 A 48.5 23 0.0005 35.7 4.3 34 125-160 244-277 (316)
196 COG3608 Predicted deacylase [G 48.5 24 0.00051 36.0 4.3 41 116-160 249-289 (331)
197 PRK10255 PTS system N-acetyl g 48.0 21 0.00044 39.8 4.1 33 126-159 536-603 (648)
198 PRK09824 PTS system beta-gluco 47.5 23 0.0005 39.3 4.4 33 126-159 516-583 (627)
199 TIGR01995 PTS-II-ABC-beta PTS 46.9 24 0.00052 39.0 4.5 33 126-159 500-567 (610)
200 COG4072 Uncharacterized protei 45.3 20 0.00044 31.8 2.8 43 96-138 99-142 (161)
201 PF06898 YqfD: Putative stage 41.3 30 0.00064 36.0 3.9 37 119-156 183-226 (385)
202 PF02666 PS_Dcarbxylase: Phosp 40.6 24 0.00052 33.1 2.8 68 85-156 134-202 (202)
203 PRK05305 phosphatidylserine de 38.5 22 0.00049 33.6 2.3 49 103-156 155-204 (206)
204 PRK11892 pyruvate dehydrogenas 38.2 34 0.00073 36.6 3.8 30 131-161 14-43 (464)
205 TIGR00164 PS_decarb_rel phosph 37.9 22 0.00047 33.2 2.0 47 104-155 136-182 (189)
206 TIGR01042 V-ATPase_V1_A V-type 36.9 45 0.00097 36.7 4.5 56 103-161 123-181 (591)
207 PF02749 QRPTase_N: Quinolinat 35.9 54 0.0012 26.5 3.8 24 136-160 46-69 (88)
208 PF02749 QRPTase_N: Quinolinat 35.5 13 0.00028 30.1 0.1 24 99-122 46-69 (88)
209 COG0213 DeoA Thymidine phospho 35.2 56 0.0012 34.4 4.6 42 119-161 330-402 (435)
210 PF13437 HlyD_3: HlyD family s 34.7 21 0.00045 29.2 1.3 25 97-121 8-32 (105)
211 cd01134 V_A-ATPase_A V/A-type 34.2 54 0.0012 34.0 4.3 56 103-161 54-112 (369)
212 KOG0368|consensus 31.9 33 0.00072 41.4 2.6 48 111-159 671-718 (2196)
213 TIGR02876 spore_yqfD sporulati 30.7 50 0.0011 34.4 3.5 31 125-156 186-223 (382)
214 PRK06078 pyrimidine-nucleoside 30.5 27 0.00059 37.0 1.5 30 94-123 372-401 (434)
215 COG1155 NtpA Archaeal/vacuolar 30.2 60 0.0013 35.2 4.0 57 104-162 122-180 (588)
216 COG2190 NagE Phosphotransferas 29.2 41 0.00089 30.6 2.3 29 96-124 85-113 (156)
217 TIGR00830 PTBA PTS system, glu 28.5 14 0.00031 32.1 -0.8 28 96-123 78-105 (121)
218 PRK14844 bifunctional DNA-dire 28.1 47 0.001 42.6 3.1 35 100-136 2422-2456(2836)
219 cd06405 PB1_Mekk2_3 The PB1 do 28.0 25 0.00054 28.1 0.6 20 388-407 11-30 (79)
220 smart00549 TAFH TAF homology. 27.8 17 0.00036 30.2 -0.5 38 388-425 10-47 (92)
221 PF00358 PTS_EIIA_1: phosphoen 27.8 13 0.00029 32.8 -1.1 29 96-124 82-110 (132)
222 PF05896 NQRA: Na(+)-transloca 27.8 37 0.0008 33.4 1.8 30 127-157 31-60 (257)
223 TIGR01995 PTS-II-ABC-beta PTS 27.0 38 0.00082 37.5 2.0 29 96-124 542-570 (610)
224 KOG1668|consensus 26.3 20 0.00044 34.6 -0.2 28 100-127 180-207 (231)
225 TIGR02644 Y_phosphoryl pyrimid 26.2 34 0.00075 35.9 1.4 28 94-121 370-397 (405)
226 PF03869 Arc: Arc-like DNA bin 25.4 2.3E+02 0.0049 20.6 5.2 37 303-341 13-49 (50)
227 COG0845 AcrA Membrane-fusion p 25.0 32 0.0007 33.6 0.9 27 95-121 73-99 (372)
228 cd06848 GCS_H Glycine cleavage 24.6 85 0.0018 25.7 3.2 30 132-162 27-57 (96)
229 PRK11637 AmiB activator; Provi 24.6 84 0.0018 32.9 4.0 25 136-161 378-402 (428)
230 cd00210 PTS_IIA_glc PTS_IIA, P 24.0 31 0.00067 30.1 0.5 28 96-123 78-105 (124)
231 PF01333 Apocytochr_F_C: Apocy 23.6 50 0.0011 28.6 1.6 17 127-143 4-20 (118)
232 PRK09824 PTS system beta-gluco 23.4 47 0.001 36.9 1.8 28 96-123 558-585 (627)
233 PRK09439 PTS system glucose-sp 22.9 21 0.00046 32.9 -0.8 28 96-123 100-127 (169)
234 PRK03934 phosphatidylserine de 22.4 49 0.0011 32.6 1.6 54 99-157 212-265 (265)
235 COG1725 Predicted transcriptio 22.0 35 0.00077 29.9 0.5 18 224-241 35-52 (125)
236 PRK14698 V-type ATP synthase s 21.6 1.2E+02 0.0025 35.9 4.6 54 104-160 124-180 (1017)
237 TIGR02643 T_phosphoryl thymidi 20.6 45 0.00098 35.4 1.0 28 93-120 375-402 (437)
238 PRK05820 deoA thymidine phosph 20.5 46 0.001 35.3 1.0 29 92-120 375-403 (440)
239 PF13375 RnfC_N: RnfC Barrel s 20.1 79 0.0017 26.5 2.2 28 130-158 35-62 (101)
No 1
>KOG0557|consensus
Probab=100.00 E-value=5.5e-60 Score=476.06 Aligned_cols=319 Identities=55% Similarity=0.820 Sum_probs=254.7
Q ss_pred cccCceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 79 REGNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 79 v~~~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
...+..|.||.|+.+|++|.|++|.+++||.++.||+||||||||++|+++++++|+|++|++++|.+.|+||++||+|.
T Consensus 35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 45678899999999999999999999999999999999999999999999999999999999999966899999999999
Q ss_pred cCCcchhcccCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcC
Q psy16142 159 ENESDVAAFKDFKDDAP--PAAGASAPAPPPPKVAAAPPPPP-PKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKG 235 (426)
Q Consensus 159 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~g 235 (426)
+.++++..+..+.++.. ...+.. +++++++....++.| +.+.+.. ..+..+...+++.+||++|+||.|+|
T Consensus 115 e~e~di~~~k~~k~~~s~~~~~~~~--~~~~app~~~~~~~Ps~~~~~~~----~~p~~~~~~~r~~asP~Ak~la~e~~ 188 (470)
T KOG0557|consen 115 EDEDDIAAFKLPKDEASSGEQSPSA--APPPAPPKVAKPEAPSAPSKPST----SQPVKAKNGGRVFASPLAKKLAEEKG 188 (470)
T ss_pred cccccHHHhhccccccccccCCccc--CCCCCCCcccccCCCCCCccccc----cccCCcCCCCceecChHHHHHHHHhC
Confidence 99988877754433210 000111 111111111111100 0000100 00111112458899999999999999
Q ss_pred CCCcCccCCCCCCCcccchhhhhhhhcCC---CCCC---CCCC---C-CCCCCCceeecCCchhhHHHHHHHhhHHH---
Q psy16142 236 LDLSSIGAGSGLFGSITSADLSKASKAGA---VAAP---SKSA---K-PTANGPFTDLPVSGVRGVIAKRLLQSKQV--- 302 (426)
Q Consensus 236 IDl~~v~~gtG~~GrI~~~DV~~~~~~~~---~~~~---~~~~---~-~~~~~~~~~~~ls~~Rk~iA~~m~~S~~~--- 302 (426)
+|++.| .||||+|||++.||+++.+... ...+ ..+. + +...+.++++|++.||+.|++||.+|++.
T Consensus 189 l~ls~i-~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh 267 (470)
T KOG0557|consen 189 LELSSI-PGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPH 267 (470)
T ss_pred CccccC-cCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCe
Confidence 999999 9999999999999999754211 0000 0000 1 12234489999999999999999999877
Q ss_pred ------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeC-CceEEcCCCcEEEEeecCCceEe
Q psy16142 303 ------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQD-TFIREYHSVDVSVAVNTDKGLFT 369 (426)
Q Consensus 303 ------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~-~~i~~~~~v~i~iAv~~~~GL~~ 369 (426)
+++|+++| +++.+.++|++|||+||++.||+++|++|++|.+ ..|+++++|||++||+|++||++
T Consensus 268 ~yvt~~~~~d~ll~~r~~ln--~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLit 345 (470)
T KOG0557|consen 268 YYVTVDVNLDKLLALREKLN--FEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLIT 345 (470)
T ss_pred EEEeeeeehHHHHHHHHHhh--hcccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccc
Confidence 78888888 5667889999999999999999999999999988 79999999999999999999999
Q ss_pred ecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 370 PIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 370 pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
|+|+|++.++|.+|++ ++++|+.|||+|||+||||||
T Consensus 346 Pii~na~~kgl~~is~-------------------~vkel~~kAr~~kL~Pee~qg 382 (470)
T KOG0557|consen 346 PIIQNADAKGLSTISS-------------------KVKELAQKAREGKLQPEEFQG 382 (470)
T ss_pred hhhhhcccccHHHHHH-------------------HHHHHHHHHhhccCCcccccC
Confidence 9999999999999999 999999999999999999998
No 2
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=2.7e-58 Score=483.46 Aligned_cols=326 Identities=44% Similarity=0.751 Sum_probs=243.9
Q ss_pred ccccCceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 78 VREGNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 78 ~v~~~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
+++.+..+.||.+|.+|+++++.+|++++||.|++||.|++|||||+++|++|+.+|+|.+|++++|++.|++|++|+++
T Consensus 108 ~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i 187 (539)
T PLN02744 108 DLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAIT 187 (539)
T ss_pred cCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEE
Confidence 45667899999999999999999999999999999999999999999999999999999999999995259999999999
Q ss_pred EcCCcchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCC
Q psy16142 158 VENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLD 237 (426)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gID 237 (426)
.+++++.+.+.............+++.+.+..+ .......+...+... .+.+........++++||+||+||+|+|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~ASP~aRrLAre~GVD 265 (539)
T PLN02744 188 VEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPP-KEEEVEKPASSPEPK-ASKPSAPPSSGDRIFASPLARKLAEDNNVP 265 (539)
T ss_pred ccCccccccccccccccccccccccccCCCCCc-ccccccCCCCCcccc-cccccccccccccccCCchhHHHHHHcCCC
Confidence 654433211110000000000000000000000 000000000000000 000000011123567999999999999999
Q ss_pred CcCccCCCCCCCcccchhhhhhhhcCC-CCC-CCCCCCCCCCCCceeecCCchhhHHHHHHHhhHHH-------------
Q psy16142 238 LSSIGAGSGLFGSITSADLSKASKAGA-VAA-PSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQV------------- 302 (426)
Q Consensus 238 l~~v~~gtG~~GrI~~~DV~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ls~~Rk~iA~~m~~S~~~------------- 302 (426)
|+.| +|||++|||+++||++|..... ..+ +.+.....+...++++||++|||.||++|++||++
T Consensus 266 Ls~V-~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt 344 (539)
T PLN02744 266 LSSI-KGTGPDGRIVKADIEDYLASGGKGATAPPSTDSKAPALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVD 344 (539)
T ss_pred HHHC-CCCCCCCcccHHHHHHHhhccccccCCCCCcccCCCCCccccccchhHHHHHHHHHHHHHhhCCeEEEEEEEEcH
Confidence 9999 9999999999999999753211 110 00000001111245689999999999999999987
Q ss_pred --HHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCC
Q psy16142 303 --IKLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKG 379 (426)
Q Consensus 303 --~~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~ 379 (426)
+++|+++++..+. .|.|+|+++||+||++.||++||.+|++|+++.|+++++|||||||++++||+||||+|+|+||
T Consensus 345 ~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~s 424 (539)
T PLN02744 345 KLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYVPVVKDADKKG 424 (539)
T ss_pred HHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCCCeEECcCCCcccCC
Confidence 8899999876654 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 380 LVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 380 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
|.||++ ++++|++|||+|+|+++||+|
T Consensus 425 l~eIa~-------------------ei~~L~~kAr~~kL~~~dl~G 451 (539)
T PLN02744 425 LSTIAE-------------------EVKQLAQKARENSLKPEDYEG 451 (539)
T ss_pred HHHHHH-------------------HHHHHHHHHHcCCCChhhcCC
Confidence 999999 999999999999999999998
No 3
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=2.3e-58 Score=473.69 Aligned_cols=295 Identities=35% Similarity=0.542 Sum_probs=237.4
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..+.||.+|.++++|++.+|++++||.|++||.||+|||||++++|+||++|+|.++++++|+ .|++|++|++|+..++
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~-~V~~G~~l~~i~~~~~ 81 (407)
T PRK05704 3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGD-TVTVGQVLGRIDEGAA 81 (407)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEecCCc
Confidence 368999999999999999999999999999999999999999999999999999999999999 8999999999976543
Q ss_pred chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCcc
Q psy16142 163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIG 242 (426)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~ 242 (426)
+.... + .+.. .+ + +. +.+. . .+. .+. .......+||+||+||+|+||||++|
T Consensus 82 ~~~~~-------~--~~~~--~~-~-~~--~~~~---~-~~~-----~~~---~~~~~~~asP~aR~lA~e~gidl~~v- 133 (407)
T PRK05704 82 AGAAA-------A--AAAA--AA-A-AA--AAPA---Q-AQA-----AAA---AEQSNDALSPAARKLAAENGLDASAV- 133 (407)
T ss_pred ccccC-------C--CCCC--CC-C-CC--CCCC---C-CCC-----Ccc---CCCccccCCchhhhHHhhcCCChhhC-
Confidence 21100 0 0000 00 0 00 0000 0 000 000 00123568999999999999999999
Q ss_pred CCCCCCCcccchhhhhhhhcCC-CCC-CCC-C--CCCC--CCCCceeecCCchhhHHHHHHHhhHHH-------------
Q psy16142 243 AGSGLFGSITSADLSKASKAGA-VAA-PSK-S--AKPT--ANGPFTDLPVSGVRGVIAKRLLQSKQV------------- 302 (426)
Q Consensus 243 ~gtG~~GrI~~~DV~~~~~~~~-~~~-~~~-~--~~~~--~~~~~~~~~ls~~Rk~iA~~m~~S~~~------------- 302 (426)
+|||++|||+++||++|..... ... ++. . ..+. .....+.+||++|||+||++|++||++
T Consensus 134 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~ 213 (407)
T PRK05704 134 KGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMT 213 (407)
T ss_pred CCCCCCCcccHHHHHHHhhcccccCCCCCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHH
Confidence 9999999999999999742211 000 000 0 0000 011235689999999999999999987
Q ss_pred --HHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCC
Q psy16142 303 --IKLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKG 379 (426)
Q Consensus 303 --~~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~ 379 (426)
+++|+++++.+.+ .|.|+|+++||+||++.||++||.+|++|+++.|++++++||||||++++||+||||+|+|+||
T Consensus 214 ~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~s 293 (407)
T PRK05704 214 PVMDLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLS 293 (407)
T ss_pred HHHHHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcCCCcccCC
Confidence 7889999876544 4899999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 380 LVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 380 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
|.||++ ++++|++|||+|+|+++||+|
T Consensus 294 l~eIa~-------------------~~~~l~~~ar~g~L~~~d~~g 320 (407)
T PRK05704 294 FAEIEK-------------------KIAELAKKARDGKLSIEELTG 320 (407)
T ss_pred HHHHHH-------------------HHHHHHHHHHcCCCChHHcCC
Confidence 999999 999999999999999999998
No 4
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=8.2e-58 Score=468.80 Aligned_cols=294 Identities=33% Similarity=0.558 Sum_probs=237.2
Q ss_pred eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCcc
Q psy16142 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESD 163 (426)
Q Consensus 84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~~ 163 (426)
.++||.+|.++++|++.+|++++||.|+.||.|++|||||+++||+||++|+|.++++++|+ .|++|++|++|+.+++.
T Consensus 2 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~-~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 2 EIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGD-TVESGQVLAILEEGNDA 80 (403)
T ss_pred eEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEecCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999 89999999999754321
Q ss_pred hhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCccC
Q psy16142 164 VAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGA 243 (426)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~~ 243 (426)
.. . .+ ++.. .+.+.+. +.+ ..+ .+. ...+++.+||+||+||+|+||||+.| .
T Consensus 81 -~~---~----~~-~~~~--~~~~~~~--~~~-----~~~------~~~---~~~~~~~asP~aR~lA~e~gvdl~~v-~ 132 (403)
T TIGR01347 81 -TA---A----PP-AKSG--EEKEETP--AAS-----AAA------APT---AAANRPSLSPAARRLAKEHGIDLSAV-P 132 (403)
T ss_pred -cc---c----cc-cccc--CCCCCCC--CCC-----CCC------CCc---CccccccCCchhhhHHHHcCCChhhC-C
Confidence 00 0 00 0000 0000000 000 000 000 11235679999999999999999999 9
Q ss_pred CCCCCCcccchhhhhhhhcCC--CCCCCCC--CCCC-CCCCceeecCCchhhHHHHHHHhhHHH---------------H
Q psy16142 244 GSGLFGSITSADLSKASKAGA--VAAPSKS--AKPT-ANGPFTDLPVSGVRGVIAKRLLQSKQV---------------I 303 (426)
Q Consensus 244 gtG~~GrI~~~DV~~~~~~~~--~~~~~~~--~~~~-~~~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~ 303 (426)
|||++|||+++||+++..... +...... ..+. .....+.+||++|||+||++|++||++ +
T Consensus 133 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~ 212 (403)
T TIGR01347 133 GTGVTGRVTKEDIIKKTEAPASAQAPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVM 212 (403)
T ss_pred CCCCCCcccHHHHHHhhhcccccCCCCCCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHH
Confidence 999999999999999743210 1100000 0000 111245689999999999999999977 7
Q ss_pred HHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHH
Q psy16142 304 KLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVD 382 (426)
Q Consensus 304 ~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~ 382 (426)
++|+++++.+.+ .|.|+|+++||+||++.||++||.||++|+++.|++++++||||||++++||+||||||||+|||.+
T Consensus 213 ~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~e 292 (403)
T TIGR01347 213 ELRKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFAD 292 (403)
T ss_pred HHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHH
Confidence 899999876544 4899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 383 ISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 383 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
|++ ++++|++|||+|+|+++||+|
T Consensus 293 Ia~-------------------~~~~l~~~ar~gkL~~~d~~g 316 (403)
T TIGR01347 293 IEK-------------------EIADLGKKARDGKLTLEDMTG 316 (403)
T ss_pred HHH-------------------HHHHHHHHHHcCCCChhhcCC
Confidence 999 999999999999999999998
No 5
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=1e-57 Score=488.40 Aligned_cols=322 Identities=29% Similarity=0.461 Sum_probs=239.5
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..+.||.+|.+|++|++.+|++++||.|++||.||+|||||++++|+||++|+|.+|++++|+ .|++|++|++|+.+++
T Consensus 136 ~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~ 214 (590)
T TIGR02927 136 TDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDD-TVDVGAEIAKIGDAGA 214 (590)
T ss_pred eEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCC-EecCCCEEEEEecCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999 8999999999976543
Q ss_pred chhcccCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC-CCCCCCCCCC-CC-CCCCCCCCCCccccChHHHHHHHHcCCCC
Q psy16142 163 DVAAFKDFKDDAPPAAGA-SAPAPPPPKVAAAPPPP-PPKAAPAPSP-TP-VPSQKTSGGTRVYASPLAKRLAAEKGLDL 238 (426)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~p~~~~-~~-~~~~~~~~~~~~~asP~aR~lA~e~gIDl 238 (426)
+................. +...+.....+...... .+.+.+...+ .+ .+........++++||+||+||+|+||||
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl 294 (590)
T TIGR02927 215 AAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDL 294 (590)
T ss_pred ccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCH
Confidence 321100000000000000 00000000000000000 0000000000 00 00000011236789999999999999999
Q ss_pred cCccCCCCCCCcccchhhhhhhhcCC---C--CC------CCC---C-CCCCC---CCCceeecCCchhhHHHHHHHhhH
Q psy16142 239 SSIGAGSGLFGSITSADLSKASKAGA---V--AA------PSK---S-AKPTA---NGPFTDLPVSGVRGVIAKRLLQSK 300 (426)
Q Consensus 239 ~~v~~gtG~~GrI~~~DV~~~~~~~~---~--~~------~~~---~-~~~~~---~~~~~~~~ls~~Rk~iA~~m~~S~ 300 (426)
++| .|||++|||+++||++|..... . .. +.. . ..+.. ...++.+||++|||.||++|++||
T Consensus 295 ~~v-~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S~ 373 (590)
T TIGR02927 295 NSV-KGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREAL 373 (590)
T ss_pred HHC-CCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHHh
Confidence 999 9999999999999999753210 0 00 000 0 00000 012457899999999999999999
Q ss_pred HH---------------HHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeC--CceEEcCCCcEEEEee
Q psy16142 301 QV---------------IKLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVDVSVAVN 362 (426)
Q Consensus 301 ~~---------------~~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~--~~i~~~~~v~i~iAv~ 362 (426)
++ ++||+++++.+.+ .|.||||++||+||+++||++||.||++|++ +.|++|+++||||||+
T Consensus 374 ~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~ 453 (590)
T TIGR02927 374 QASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVD 453 (590)
T ss_pred ccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEE
Confidence 88 8999999876544 4899999999999999999999999999974 4799999999999999
Q ss_pred cCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 363 TDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 363 ~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
+++||+||||||+|+|||.+|++ ++++|++|||+|||+++||+|
T Consensus 454 t~~GL~vPvIk~a~~~sl~~ia~-------------------~i~~l~~kAr~gkL~p~e~~G 497 (590)
T TIGR02927 454 TDAGLLSPVIHNAGDLSLGEIAK-------------------AIADIAARARNGKLKPDDLAG 497 (590)
T ss_pred CCCCcEecccCCcccCCHHHHHH-------------------HHHHHHHHHHcCCCChHHhCC
Confidence 99999999999999999999999 999999999999999999998
No 6
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=4.1e-56 Score=460.80 Aligned_cols=317 Identities=50% Similarity=0.784 Sum_probs=237.2
Q ss_pred EeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCcc-ccCCcEEEEEEcCCcc
Q psy16142 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKD-VPIGKLVCIIVENESD 163 (426)
Q Consensus 85 i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~-v~vG~~l~~i~~~~~~ 163 (426)
+.||.++.++.++++.+|++++||.|+.||.||+|||||++++++||++|+|.++++++|+ . |++|++|++|++.+++
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~-~~v~vG~~l~~i~~~~~~ 80 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGT-KDVPVNKPIAVLVEEKED 80 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCC-EEecCCCEEEEEeccCCc
Confidence 5799999999999999999999999999999999999999999999999999999999998 8 9999999999764432
Q ss_pred hhcccCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCccccChHHHHHHHHcCCCCcC
Q psy16142 164 VAAFKDFK-DDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQ--KTSGGTRVYASPLAKRLAAEKGLDLSS 240 (426)
Q Consensus 164 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~asP~aR~lA~e~gIDl~~ 240 (426)
........ .+...+.+.....++..+...+.++..+ .+.......+.. ......++++||+||+||+||||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~ 158 (435)
T TIGR01349 81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAP--QKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSA 158 (435)
T ss_pred cccccccccccccccCCCCcccccCCCCcCCCCCCCc--cccccccccccccccccccccccCCHHHHHHHHHcCCCHhH
Confidence 21000000 0000000000000000000000000000 000000000000 001122567999999999999999999
Q ss_pred ccCCCCCCCcccchhhhhhhhcC-CCCC-C-CCC--C---CCC--CCCCceeecCCchhhHHHHHHHhhHHH--------
Q psy16142 241 IGAGSGLFGSITSADLSKASKAG-AVAA-P-SKS--A---KPT--ANGPFTDLPVSGVRGVIAKRLLQSKQV-------- 302 (426)
Q Consensus 241 v~~gtG~~GrI~~~DV~~~~~~~-~~~~-~-~~~--~---~~~--~~~~~~~~~ls~~Rk~iA~~m~~S~~~-------- 302 (426)
| +|||++|||+++||++|.... ..+. + ..+ . .+. .....+.+||++|||.|+++|++||++
T Consensus 159 v-~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~ 237 (435)
T TIGR01349 159 V-AGSGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSI 237 (435)
T ss_pred C-CCCCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 9 999999999999999974321 0000 0 000 0 000 111245689999999999999999987
Q ss_pred -------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCc
Q psy16142 303 -------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDA 375 (426)
Q Consensus 303 -------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a 375 (426)
+++|+++++...+ |.|+|+++||+||+++||++||.||++|+++.|++|++|||||||++++||+||||+|+
T Consensus 238 evd~t~l~~~r~~~~~~~~~-~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a 316 (435)
T TIGR01349 238 ECNVDKLLALRKELNAMASE-VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIVRNA 316 (435)
T ss_pred EEEhHHHHHHHHHHHhhhhc-CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEECCCCCc
Confidence 7889998876544 88999999999999999999999999999989999999999999999999999999999
Q ss_pred CCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 376 DKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 376 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
|+|||.||++ ++++|++|||+|+|+++||+|
T Consensus 317 ~~~sl~eia~-------------------~i~~l~~~ar~~~L~~~d~~g 347 (435)
T TIGR01349 317 DAKGLSTISN-------------------EIKDLAKRARNNKLKPEEFQG 347 (435)
T ss_pred ccCCHHHHHH-------------------HHHHHHHHHhcCCCChhhcCC
Confidence 9999999999 999999999999999999998
No 7
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=3.2e-56 Score=457.47 Aligned_cols=296 Identities=43% Similarity=0.685 Sum_probs=243.1
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
.+|+||+||++|++|+|++|++++||.|++||.|++|||||+++||+||++|+|.+|++++|+ +|++|++|++|+.+++
T Consensus 3 ~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~-~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 3 IEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGD-TVPVGAVIARIEEEGA 81 (404)
T ss_pred ceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCC-EEcCCCeEEEEecCCC
Confidence 468999999999999999999999999999999999999999999999999999999999999 7999999999988765
Q ss_pred chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCcc
Q psy16142 163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIG 242 (426)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~ 242 (426)
+.... +.. .+++..+ . +. ..+. +.+. ...++.++||++|+||+|+||||+++
T Consensus 82 ~~~a~-----------~~~--~~~~~~~--~-~~----~~~~----~~~~---~~~~~~~asP~~r~la~e~gidl~~v- 133 (404)
T COG0508 82 DAPAA-----------AEA--PPEPAAA--A-PA----SAPA----TAAS---AAAGRVLASPAVRRLAREAGIDLSKV- 133 (404)
T ss_pred ccccc-----------Ccc--cCCcccc--C-cC----cccC----cccc---ccccccccCcchhhhhhhcCCCHHHc-
Confidence 42000 000 0000000 0 00 0000 0000 01156789999999999999999999
Q ss_pred CCCCCCCcccchhhhhhhhcCC--CCCCCC-CCCC-CCCCCceeecCCchhhHHHHHHHhhHHH---------------H
Q psy16142 243 AGSGLFGSITSADLSKASKAGA--VAAPSK-SAKP-TANGPFTDLPVSGVRGVIAKRLLQSKQV---------------I 303 (426)
Q Consensus 243 ~gtG~~GrI~~~DV~~~~~~~~--~~~~~~-~~~~-~~~~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~ 303 (426)
.|||++|||+++|+..+..... ...... ...+ .....++++||+++||.|+++|..|+++ +
T Consensus 134 ~gtG~~gri~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~ 213 (404)
T COG0508 134 KGTGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLM 213 (404)
T ss_pred CCcCCCCceeccchhhhcccccccccccccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHH
Confidence 8999999999999998643220 000000 0001 2335578899999999999999999988 8
Q ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeCC--ceEEcCCCcEEEEeecCCceEeecccCcCCCCHH
Q psy16142 304 KLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDT--FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLV 381 (426)
Q Consensus 304 ~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~--~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~ 381 (426)
.+|+++++.+.+.|.|+|+++|++||++.||++||.+|++|+++ .|++++++|||+||++++||+||||+|||+||+.
T Consensus 214 ~lr~~~~~~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~ 293 (404)
T COG0508 214 ALRKKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLA 293 (404)
T ss_pred HHHHHhhhhhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHH
Confidence 99999998776569999999999999999999999999888875 7999999999999999999999999999999999
Q ss_pred HHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccCC
Q psy16142 382 DISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQVR 426 (426)
Q Consensus 382 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~~ 426 (426)
+|++ ++++|+.|||+|||+++||||.
T Consensus 294 ~i~~-------------------~i~~la~~aR~~kl~~~e~~gg 319 (404)
T COG0508 294 EIAK-------------------EIKDLAKKARDGKLTPEEMQGG 319 (404)
T ss_pred HHHH-------------------HHHHHHHHHHhcCcCHHHhCCc
Confidence 9999 9999999999999999999983
No 8
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=1.3e-55 Score=468.72 Aligned_cols=311 Identities=31% Similarity=0.488 Sum_probs=237.4
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..+.||.+|. |++|+|.+|++++||.|++||.|++|||||++++|+||++|+|.++++++|+ .|++|++|++|+.+++
T Consensus 117 ~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 117 QEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGD-SVPTGDLILTLSVAGS 194 (546)
T ss_pred eEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCC-EecCCCEEEEEecCCC
Confidence 6889999999 9999999999999999999999999999999999999999999999999999 8999999999976443
Q ss_pred chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCcc-ccChHHHHHHHHcCCCCcC
Q psy16142 163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP-SQKTSGGTRV-YASPLAKRLAAEKGLDLSS 240 (426)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~-~asP~aR~lA~e~gIDl~~ 240 (426)
+..... . . ..+.+.. +.+.+.. ..+...+ .+.....+.+ ........++ ++||+||+||+||||||+.
T Consensus 195 ~~~~~~-~-~--~~~~~~~---~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~ 264 (546)
T TIGR01348 195 TPATAP-A-P--ASAQPAA---QSPAATQ-PEPAAAP--AAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSA 264 (546)
T ss_pred Cccccc-C-c--ccccccC---CCCcccc-ccccCCC--CCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhh
Confidence 211000 0 0 0000000 0000000 0000000 0000000000 0000112244 6999999999999999999
Q ss_pred ccCCCCCCCcccchhhhhhhhcCC---CCCCC--C-C---C--CCC---C-CCCceeecCCchhhHHHHHHHhhHHH---
Q psy16142 241 IGAGSGLFGSITSADLSKASKAGA---VAAPS--K-S---A--KPT---A-NGPFTDLPVSGVRGVIAKRLLQSKQV--- 302 (426)
Q Consensus 241 v~~gtG~~GrI~~~DV~~~~~~~~---~~~~~--~-~---~--~~~---~-~~~~~~~~ls~~Rk~iA~~m~~S~~~--- 302 (426)
| .|||++|||+++||++|..... ...+. . + . .+. . ...++.+||++|||.||++|++|+++
T Consensus 265 v-~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh 343 (546)
T TIGR01348 265 V-KGTGIKGRILREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPH 343 (546)
T ss_pred C-CCCCCCCeEeHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCE
Confidence 9 9999999999999999742211 00000 0 0 0 000 0 01235689999999999999999887
Q ss_pred ------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeC--CceEEcCCCcEEEEeecCCceE
Q psy16142 303 ------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVDVSVAVNTDKGLF 368 (426)
Q Consensus 303 ------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~--~~i~~~~~v~i~iAv~~~~GL~ 368 (426)
+++|+++++..+..|.|+||++||+||++.||++||.+|++|++ +.|+++++|||||||++++||+
T Consensus 344 ~~~~~evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~ 423 (546)
T TIGR01348 344 VTHFDKADITEMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLL 423 (546)
T ss_pred EEEEEEEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeE
Confidence 88999999876667899999999999999999999999999984 4699999999999999999999
Q ss_pred eecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 369 TPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 369 ~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
||||+|+|+|||.+|++ ++++|++|||+|||+++||+|
T Consensus 424 vPvi~~a~~~sl~~ia~-------------------~~~~l~~~ar~g~L~~~d~~g 461 (546)
T TIGR01348 424 VPVIKDVDRKGITELAL-------------------ELSDLAKKARDGKLTPDEMQG 461 (546)
T ss_pred ECCcCCcccCCHHHHHH-------------------HHHHHHHHHhcCCCCHHHhCC
Confidence 99999999999999999 999999999999999999987
No 9
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=1.9e-54 Score=446.19 Aligned_cols=294 Identities=24% Similarity=0.363 Sum_probs=232.9
Q ss_pred EeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCcch
Q psy16142 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENESDV 164 (426)
Q Consensus 85 i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~~~ 164 (426)
+.||+++.++.++++.+|++++||.|++||.|+++||||+.++++|+++|+|.++++++|+ .|++|++|++|+.++++.
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~~~ 79 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGD-IVKVGETLLKIMVEDSQH 79 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEeccCCcc
Confidence 4689999999999999999999999999999999999999999999999999999999999 899999999997543321
Q ss_pred hcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCccCC
Q psy16142 165 AAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAG 244 (426)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~~g 244 (426)
... . +++. + +. . ...++ ...+ . ... ......++||+||+||+++||||+.| +|
T Consensus 80 ~~~-~--------~~~~---~-~~-~-~~~~~---~~~~-~----~~~---~~~~~~~asP~aR~lA~e~gvdl~~v-~g 132 (416)
T PLN02528 80 LRS-D--------SLLL---P-TD-S-SNIVS---LAES-D----ERG---SNLSGVLSTPAVRHLAKQYGIDLNDI-LG 132 (416)
T ss_pred ccc-c--------CCCC---C-CC-C-ccCCC---CCCC-C----ccc---cccCCccCChHHHHHHHHhCCCHHHC-CC
Confidence 100 0 0000 0 00 0 00000 0000 0 000 00113569999999999999999999 99
Q ss_pred CCCCCcccchhhhhhhhcCC----CC-CC--CCCCC-------CC-CCC--CceeecCCchhhHHHHHHHhhHHH-----
Q psy16142 245 SGLFGSITSADLSKASKAGA----VA-AP--SKSAK-------PT-ANG--PFTDLPVSGVRGVIAKRLLQSKQV----- 302 (426)
Q Consensus 245 tG~~GrI~~~DV~~~~~~~~----~~-~~--~~~~~-------~~-~~~--~~~~~~ls~~Rk~iA~~m~~S~~~----- 302 (426)
||++|||+++||++|..... .. .+ ..+.. +. ... ..+.+||++|||+||++|++|+..
T Consensus 133 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~ip~~~~ 212 (416)
T PLN02528 133 TGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAAKVPHFHY 212 (416)
T ss_pred CCCCCcEeHHHHHHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcCcCCeEEE
Confidence 99999999999999743210 00 00 00000 00 001 135689999999999999999833
Q ss_pred ---------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeCC--ceEEcCCCcEEEEeecCCceEeec
Q psy16142 303 ---------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDT--FIREYHSVDVSVAVNTDKGLFTPI 371 (426)
Q Consensus 303 ---------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~--~i~~~~~v~i~iAv~~~~GL~~pv 371 (426)
+++|+++++.....|.|+||++||+||+++||++||.+|++|+++ .|++|+++||||||++++||+|||
T Consensus 213 ~~eid~~~l~~~r~~~~~~~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPv 292 (416)
T PLN02528 213 VEEINVDALVELKASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPN 292 (416)
T ss_pred EEEEEhHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecc
Confidence 788999987655568999999999999999999999999999865 699999999999999999999999
Q ss_pred ccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 372 VFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 372 i~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
|+|+|+|||.+|++ ++++|++|||+|+|+++||+|
T Consensus 293 i~~a~~~sl~eI~~-------------------~~~~l~~~ar~gkL~~~dl~g 327 (416)
T PLN02528 293 IKNVQSLSLLEITK-------------------ELSRLQHLAAENKLNPEDITG 327 (416)
T ss_pred cCCcccCCHHHHHH-------------------HHHHHHHHHHcCCCCHHHhCC
Confidence 99999999999999 999999999999999999997
No 10
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=5.6e-52 Score=448.20 Aligned_cols=307 Identities=30% Similarity=0.427 Sum_probs=233.8
Q ss_pred CceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...+.||.+| +++|++.+|++++||.|++||.||+|||||++++|+||++|+|.+|++++|+ .|++|++|+.|+.++
T Consensus 206 ~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~-~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 206 VKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGD-KVKTGSLIMRFEVEG 282 (633)
T ss_pred ceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCC-EecCCCEEEEEecCC
Confidence 3578999999 8999999999999999999999999999999999999999999999999999 899999999997544
Q ss_pred cchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCc
Q psy16142 162 SDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSI 241 (426)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v 241 (426)
+..... . .+. .++ .+.+.+.....+. ..+... ............++++||+||+||+++||||+.|
T Consensus 283 ~~~~~~----~-~~~-~~~---~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v 348 (633)
T PRK11854 283 AAPAAA----P-AKQ-EAA---APAPAAAKAEAPA----AAPAAK-AEGKSEFAENDAYVHATPLVRRLAREFGVNLAKV 348 (633)
T ss_pred CCcccc----c-ccc-CCC---CCCccccccCCCC----CCCccc-ccccccccccCCccCCCchhHHHHHHhCCChhhc
Confidence 321100 0 000 000 0000000000000 000000 0000000011235679999999999999999999
Q ss_pred cCCCCCCCcccchhhhhhhhcC---CCCCC---CCC-C----C--CC-C---CCCceeecCCchhhHHHHHHHhhHHH--
Q psy16142 242 GAGSGLFGSITSADLSKASKAG---AVAAP---SKS-A----K--PT-A---NGPFTDLPVSGVRGVIAKRLLQSKQV-- 302 (426)
Q Consensus 242 ~~gtG~~GrI~~~DV~~~~~~~---~~~~~---~~~-~----~--~~-~---~~~~~~~~ls~~Rk~iA~~m~~S~~~-- 302 (426)
+|||++|||+++||++|.... ....+ ... . . +. . .+..+.+||++|||.||++|.+||++
T Consensus 349 -~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip 427 (633)
T PRK11854 349 -KGTGRKGRILKEDVQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIP 427 (633)
T ss_pred -CCCCCCCeEeHHHHHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCC
Confidence 999999999999999874221 00000 000 0 0 00 0 11235689999999999999999987
Q ss_pred -------------HHHHHHHHHHHH--HhCCcccHHHHHHHHHHHHhhhcccccceee--CCceEEcCCCcEEEEeecCC
Q psy16142 303 -------------IKLREQMNKALE--KRGAKLSINDFIIKATALASRRVPEANSSWQ--DTFIREYHSVDVSVAVNTDK 365 (426)
Q Consensus 303 -------------~~lr~~~~~~~~--~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~--~~~i~~~~~v~i~iAv~~~~ 365 (426)
+++|+++++... ++|.++|+++||+||+++||++||+||++|+ ++.|++|+++||||||++++
T Consensus 428 ~~~~~~evD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~ 507 (633)
T PRK11854 428 HVTQFDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPN 507 (633)
T ss_pred eEEEEeEEEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCC
Confidence 788888875432 3489999999999999999999999999996 45799999999999999999
Q ss_pred ceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 366 GLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 366 GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
||+||||+|++++||.+|++ ++++|++++|+|+|+++||+|
T Consensus 508 GL~vPvi~~a~~~sl~~i~~-------------------~~~~l~~~ar~~~l~~~~~~g 548 (633)
T PRK11854 508 GLVVPVFKDVNKKGIIELSR-------------------ELMDISKKARDGKLTAGDMQG 548 (633)
T ss_pred ceEEeeECCCccCCHHHHHH-------------------HHHHHHHHHHcCCCChHHcCC
Confidence 99999999999999999999 999999999999999999987
No 11
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=2.3e-50 Score=429.78 Aligned_cols=307 Identities=33% Similarity=0.491 Sum_probs=236.2
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..+.||.+|. |++|++.+|++++||.|++||.|++||+||+.++|+||++|+|.++++++|+ .|.+|++|++|...++
T Consensus 120 ~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~-~v~~G~~l~~i~~~~~ 197 (547)
T PRK11855 120 VEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGD-KVSVGSLLVVIEVAAA 197 (547)
T ss_pred eEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCC-EecCCCEEEEEecCCC
Confidence 5789999999 9999999999999999999999999999999999999999999999999999 8999999999976432
Q ss_pred chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc-ccChHHHHHHHHcCCCCcCc
Q psy16142 163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRV-YASPLAKRLAAEKGLDLSSI 241 (426)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~asP~aR~lA~e~gIDl~~v 241 (426)
+.... ... ... .+.. ...+ .+...+.. . ..+.. ..+.. ....++. ++||+||+||+||||||+.|
T Consensus 198 ~~~~~--~~~-~~~-~~~~--~~~~--~~~~~~~~-~-~~~~~---~~~~~-~~~~~~~~~asP~aR~lA~e~gidl~~v 263 (547)
T PRK11855 198 APAAA--AAP-AAA-APAA--AAAA--APAPAPAA-A-AAPAA---AAPAA-AAAPGKAPHASPAVRRLARELGVDLSQV 263 (547)
T ss_pred ccccc--cCC-CCC-CCcc--cccc--CCCCCCcc-c-ccCCc---ccccc-ccccCCcccCChHHHHHHHHhCCCHHHC
Confidence 21000 000 000 0000 0000 00000000 0 00000 00000 0111233 79999999999999999999
Q ss_pred cCCCCCCCcccchhhhhhhhcCC-C-CCC-----CC----C---CCCCC----CCCceeecCCchhhHHHHHHHhhHHH-
Q psy16142 242 GAGSGLFGSITSADLSKASKAGA-V-AAP-----SK----S---AKPTA----NGPFTDLPVSGVRGVIAKRLLQSKQV- 302 (426)
Q Consensus 242 ~~gtG~~GrI~~~DV~~~~~~~~-~-~~~-----~~----~---~~~~~----~~~~~~~~ls~~Rk~iA~~m~~S~~~- 302 (426)
.|||++|||+++||++|..... . ..+ .. . ..+.. ...++.+||++|||.||++|++||++
T Consensus 264 -~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~i 342 (547)
T PRK11855 264 -KGTGKKGRITKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTI 342 (547)
T ss_pred -cCCCCCCcEeHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcC
Confidence 9999999999999998743210 0 000 00 0 00000 01245689999999999999999987
Q ss_pred --------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceee--CCceEEcCCCcEEEEeecCCc
Q psy16142 303 --------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQ--DTFIREYHSVDVSVAVNTDKG 366 (426)
Q Consensus 303 --------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~--~~~i~~~~~v~i~iAv~~~~G 366 (426)
+++|+++++.+++.|.++||++||+||+++||++||+||++|+ ++.|++|+++|||+||++++|
T Consensus 343 P~~~~~~evd~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~g 422 (547)
T PRK11855 343 PHVTQFDEADITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNG 422 (547)
T ss_pred CeEEEEEEEEChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCc
Confidence 7889999876666789999999999999999999999999998 457999999999999999999
Q ss_pred eEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 367 LFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 367 L~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
|++|||+|++++||.+|++ ++++|++++|+|+|.++||+|
T Consensus 423 l~vpvi~~~~~~sl~~i~~-------------------~~~~l~~~ar~~~l~~~~~~g 462 (547)
T PRK11855 423 LVVPVIKDVDKKSLLEIAR-------------------EIAELAKKARDGKLKPDDMQG 462 (547)
T ss_pred cEeCCcCCCccCCHHHHHH-------------------HHHHHHHHHHcCCCChHhcCC
Confidence 9999999999999999999 999999999999999999987
No 12
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=2.3e-48 Score=401.68 Aligned_cols=301 Identities=43% Similarity=0.667 Sum_probs=231.2
Q ss_pred eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc-
Q psy16142 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES- 162 (426)
Q Consensus 84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~- 162 (426)
.+.||.++.++.++++.+|++++||.|+.||.|++|||||+.++++||++|+|.++++++|+ .|.+|++|++|...++
T Consensus 4 ~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~-~v~~G~~l~~i~~~~~~ 82 (411)
T PRK11856 4 EFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGD-VVPVGSVIAVIEEEGEA 82 (411)
T ss_pred eEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCC-EeCCCCEEEEEecCCCC
Confidence 58899999999999999999999999999999999999999999999999999999999999 8999999999976543
Q ss_pred chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCcc
Q psy16142 163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIG 242 (426)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~ 242 (426)
+...... .. .. .+.+.+.....+.. ...+... ..+. .....+.++||++|+||+||||||++|
T Consensus 83 ~~~~~~~---~~-----~~--~~~~~~~~~~~~~~--~~~~~~~--~~~~--~~~~~~~~asP~~r~la~~~gidl~~i- 145 (411)
T PRK11856 83 EAAAAAE---AA-----PE--APAPEPAPAAAAAA--AAAPAAA--AAPA--APAAAAAKASPAVRKLARELGVDLSTV- 145 (411)
T ss_pred ccccccC---CC-----CC--CCCCCCCCCCCCCC--CCCCCcc--cCcc--cccCCcccCChHHHHHHHHcCCCHHHC-
Confidence 2111000 00 00 00000000000000 0000000 0000 001123468999999999999999999
Q ss_pred CCCCCCCcccchhhhhhhhcCCCC-C-CCCCC--CC-CCCCCceeecCCchhhHHHHHHHhhHHH---------------
Q psy16142 243 AGSGLFGSITSADLSKASKAGAVA-A-PSKSA--KP-TANGPFTDLPVSGVRGVIAKRLLQSKQV--------------- 302 (426)
Q Consensus 243 ~gtG~~GrI~~~DV~~~~~~~~~~-~-~~~~~--~~-~~~~~~~~~~ls~~Rk~iA~~m~~S~~~--------------- 302 (426)
+|||++|||+++||+++....... . ..... .+ ......+.+||+++||.||++|.+||++
T Consensus 146 ~gsG~~Gri~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l 225 (411)
T PRK11856 146 KGSGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTAL 225 (411)
T ss_pred cCCCCCCeEEHHHHHHHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHH
Confidence 999999999999999874321110 0 00000 00 1112356789999999999999999877
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHH
Q psy16142 303 IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVD 382 (426)
Q Consensus 303 ~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~ 382 (426)
+++|+++++ .+.++||++||+||+++||++||+||++|+++.+++|++||||+||++++||++|||++++++++.+
T Consensus 226 ~~~~k~~~~----~~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~e 301 (411)
T PRK11856 226 LALRKQLKA----IGVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFE 301 (411)
T ss_pred HHHHHHHHh----hccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHH
Confidence 555555542 2479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 383 ISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 383 i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
|++ +++++++++|+|+|.++||+|
T Consensus 302 i~~-------------------~~~~~~~~ar~~~l~~~~~~~ 325 (411)
T PRK11856 302 LAR-------------------EIKDLAEKAREGKLKPEELQG 325 (411)
T ss_pred HHH-------------------HHHHHHHHHHcCCCCHHHhCC
Confidence 999 999999999999999999986
No 13
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=7.2e-48 Score=397.48 Aligned_cols=269 Identities=29% Similarity=0.430 Sum_probs=208.6
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..++||++|+++++|+|.+|++++||.|++||+||+|||||++++|+||++|+|.+|++++|+ .|++|++|++|+..++
T Consensus 92 ~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd-~V~vG~~L~~I~~~~~ 170 (463)
T PLN02226 92 VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGD-TVEPGTKVAIISKSED 170 (463)
T ss_pred eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCC-EecCCCEEEEeccCCc
Confidence 578999999999999999999999999999999999999999999999999999999999999 8999999999975332
Q ss_pred chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCcc
Q psy16142 163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIG 242 (426)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~ 242 (426)
..+ . .. ... +++. . ..+. +.. +.+ . ....++.++|++|+.+
T Consensus 171 ~~~---~-----~~--~~~---~~~~-~--~~~~------~~~---~~~-~--~~~~~v~asp~~r~~~----------- 211 (463)
T PLN02226 171 AAS---Q-----VT--PSQ---KIPE-T--TDPK------PSP---PAE-D--KQKPKVESAPVAEKPK----------- 211 (463)
T ss_pred ccc---c-----cC--ccC---CCCC-C--CCCC------CCC---ccc-c--ccccCCCcchhhcccc-----------
Confidence 110 0 00 000 0000 0 0000 000 000 0 0012456788887533
Q ss_pred CCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCCCCCceeecCCchhhHHHHHHHhhHHH---------------HHHHH
Q psy16142 243 AGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQV---------------IKLRE 307 (426)
Q Consensus 243 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~ 307 (426)
.++|+.+.- .+ ... . .. ......+.+||++|||.||++|++||++ +++|+
T Consensus 212 ~~~~~~~~~--------~~----~~~-~-~~-~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~ 276 (463)
T PLN02226 212 APSSPPPPK--------QS----AKE-P-QL-PPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS 276 (463)
T ss_pred CCCCCCCCc--------cc----ccC-c-cc-ccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHH
Confidence 122332210 00 000 0 00 0011235689999999999999999987 88999
Q ss_pred HHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhc
Q psy16142 308 QMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISND 386 (426)
Q Consensus 308 ~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~ 386 (426)
++++.+.+ .|.|+|+++||+||+++||++||.+|++|+++.|++|++|||||||++++||+||||+|+|+|||.||++
T Consensus 277 ~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~- 355 (463)
T PLN02226 277 QYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEK- 355 (463)
T ss_pred HHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCCEEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHH-
Confidence 99876655 4899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 387 SRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
++++|++|||+|+|+++||+|
T Consensus 356 ------------------ei~~L~~kAR~gkL~~~dl~G 376 (463)
T PLN02226 356 ------------------TINGLAKKANEGTISIDEMAG 376 (463)
T ss_pred ------------------HHHHHHHHHHcCCCCHHHhCC
Confidence 999999999999999999998
No 14
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=4.6e-47 Score=388.84 Aligned_cols=272 Identities=28% Similarity=0.453 Sum_probs=204.5
Q ss_pred CceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
-..++||.+|.+|++|+|.+|++++||.|++||+|++|||||++++|+||++|+|.++++++|+ .|++|++|++|+..+
T Consensus 44 i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~-~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 44 IKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGD-TVEVGAPLSEIDTGG 122 (418)
T ss_pred ceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCC-EecCCCEEEEEcCCC
Confidence 3578999999999999999999999999999999999999999999999999999999999999 899999999997543
Q ss_pred cchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCc
Q psy16142 162 SDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSI 241 (426)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v 241 (426)
+.... +. .+.. .+.+. .+.+..+....| ........+..++|.+|+. .
T Consensus 123 ~~~~~--------~~-~~~~--~~~~~---~~~~~~~~~~~p--------~~~~~a~~~~~a~p~vr~~----------~ 170 (418)
T PTZ00144 123 APPAA--------AP-AAAA--AAKAE---KTTPEKPKAAAP--------TPEPPAASKPTPPAAAKPP----------E 170 (418)
T ss_pred ccccc--------cc-cccC--CCCCc---cCCCCCCCCCCC--------ccccccccccCCchhhhcc----------c
Confidence 31100 00 0000 00000 000000000000 0000001123455666531 0
Q ss_pred cCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCCCCCceeecCCchhhHHHHHHHhhHHH---------------HHHH
Q psy16142 242 GAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQV---------------IKLR 306 (426)
Q Consensus 242 ~~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr 306 (426)
. .+...... . ..+......+.+||++|||+||++|++||++ +++|
T Consensus 171 -~----------------~~~~~~~~--~-~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r 230 (418)
T PTZ00144 171 -P----------------APAAKPPP--T-PVARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELR 230 (418)
T ss_pred -c----------------CCCCCCCC--C-CccccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHH
Confidence 0 00000000 0 0000011134579999999999999999987 7899
Q ss_pred HHHHHHHHHh-CCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHh
Q psy16142 307 EQMNKALEKR-GAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISN 385 (426)
Q Consensus 307 ~~~~~~~~~~-~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~ 385 (426)
+++++.+.+. |.|+|+++||+||++.||++||.+|++|+++.|++|+++||||||++++||+||||+|||+|||.||++
T Consensus 231 ~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ 310 (418)
T PTZ00144 231 KEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEK 310 (418)
T ss_pred HHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCEEEEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHH
Confidence 9998766554 899999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 386 DSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
++++|++|||+|+|+++||+|
T Consensus 311 -------------------ei~~L~~~ar~g~L~~~e~~G 331 (418)
T PTZ00144 311 -------------------ELADLAEKARNNKLTLEDMTG 331 (418)
T ss_pred -------------------HHHHHHHHHHcCCCCHHHhCC
Confidence 999999999999999999998
No 15
>KOG0558|consensus
Probab=100.00 E-value=1.7e-47 Score=371.24 Aligned_cols=291 Identities=24% Similarity=0.396 Sum_probs=237.9
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..+++.++|+++.+.++.+|++++||.|++.|.||||++||++++|.+.++|+|++|+-..++ ...||++|..++.++.
T Consensus 65 v~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~dd-ia~VGk~Lvd~eve~~ 143 (474)
T KOG0558|consen 65 VQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDD-IAKVGKPLVDLEVEDS 143 (474)
T ss_pred EEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchh-hhHhCcceeeeeeccC
Confidence 456888999999999999999999999999999999999999999999999999999999999 8999999999986542
Q ss_pred chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCcc
Q psy16142 163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIG 242 (426)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~ 242 (426)
..... . ..+ + + ..+.+.. + ..........++|++||||.|+||||+.|
T Consensus 144 ~ds~e-------------~--s~e-s------~---~vs~~~~-----~-~~~~~~~~tlaTPaVRrlA~e~~idla~v- 191 (474)
T KOG0558|consen 144 QDSPE-------------D--SDE-S------P---AVSLGES-----K-QGEESLLKTLATPAVRRLAKENGIDLAEV- 191 (474)
T ss_pred cCCcc-------------c--CCc-c------c---cccCCCC-----c-hhhhhccccccCHHHHHHHHHhCCceEee-
Confidence 11000 0 000 0 0 0000000 0 00011234568999999999999999999
Q ss_pred CCCCCCCcccchhhhhhhhcCCC--CCCC-------CCCCC-----CCCCCceeecCCchhhHHHHHHHhhHHH------
Q psy16142 243 AGSGLFGSITSADLSKASKAGAV--AAPS-------KSAKP-----TANGPFTDLPVSGVRGVIAKRLLQSKQV------ 302 (426)
Q Consensus 243 ~gtG~~GrI~~~DV~~~~~~~~~--~~~~-------~~~~~-----~~~~~~~~~~ls~~Rk~iA~~m~~S~~~------ 302 (426)
+|||++|||+|+||+++..+.+. ..+. ++..| ..-.....+|+.+.+|+|-+.|+++...
T Consensus 192 ~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~alkiPHF~y~ 271 (474)
T KOG0558|consen 192 TGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEALKIPHFGYV 271 (474)
T ss_pred eccCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999998532110 0000 00111 1112245689999999999999999766
Q ss_pred --------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeC--CceEEcCCCcEEEEeecCCceEeecc
Q psy16142 303 --------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVDVSVAVNTDKGLFTPIV 372 (426)
Q Consensus 303 --------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~--~~i~~~~~v~i~iAv~~~~GL~~pvi 372 (426)
+++|+.++....++|+|+||++|++||+.+||-+||.+|++++. +.|+++.+.|||||+||+.||+||.|
T Consensus 272 dEIn~~sLvklr~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNi 351 (474)
T KOG0558|consen 272 DEINCDSLVKLRQELKENAKERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNI 351 (474)
T ss_pred cccChHHHHHHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCc
Confidence 89999999988889999999999999999999999999999987 47999999999999999999999999
Q ss_pred cCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 373 FDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 373 ~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
+|++.+|+.||++ |+.+|.+..+.|+|+++|+.|
T Consensus 352 KN~q~~si~eIak-------------------eLnrLq~~g~~~qls~~D~t~ 385 (474)
T KOG0558|consen 352 KNVQSLSIFEIAK-------------------ELNRLQELGANGQLSPEDLTG 385 (474)
T ss_pred cccchhhHHHHHH-------------------HHHHHHHhhhcCCcChhhccC
Confidence 9999999999999 999999999999999999987
No 16
>KOG0559|consensus
Probab=100.00 E-value=1.6e-45 Score=359.00 Aligned_cols=282 Identities=31% Similarity=0.460 Sum_probs=205.8
Q ss_pred CceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...+..|.+++++++|++..|++++||+|++++.+++|||||.+++|.||.+|+|.+++|++|+ +|.+|+.|+.|....
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gd-tV~~g~~la~i~~ga 150 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGD-TVTPGQKLAKISPGA 150 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCC-cccCCceeEEecCCC
Confidence 4568899999999999999999999999999999999999999999999999999999999999 899999999998753
Q ss_pred cchhcccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcC
Q psy16142 162 SDVAAFKD-FKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSS 240 (426)
Q Consensus 162 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~ 240 (426)
++...... ++..++..+++.+..+.+ .+.+ .+..+.|...+++.+.. .....++ +...-..+-+
T Consensus 151 Apa~~~~~apa~~~pk~~~a~~a~p~~----~s~~-~p~~~apv~e~p~~p~~----~~P~~~~-a~k~~v~~~~----- 215 (457)
T KOG0559|consen 151 APAKGGASAPAKAEPKTAPAAAAPPKP----SSKP-PPKEAAPVAESPPAPSS----PEPVPAS-AKKPSVAQPK----- 215 (457)
T ss_pred CCccccccCCCccCCCCCCCCCCCCCc----cCCC-CccccCCCCCCCCCCCC----CCCCCcc-ccCccccCCC-----
Confidence 33211100 000000000000000000 0000 00001111100001100 0000011 0000000000
Q ss_pred ccCCCCCCCcccchhhhhhhhcCCCCCCCCCCCCCCCCCceeecCCchhhHHHHHHHhhHHH---------------HHH
Q psy16142 241 IGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQV---------------IKL 305 (426)
Q Consensus 241 v~~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~l 305 (426)
.++... ..+...+.+++|++||+.||.||.+|+++ +++
T Consensus 216 --------------------------~~p~~~-~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~m 268 (457)
T KOG0559|consen 216 --------------------------PPPSEG-ATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEM 268 (457)
T ss_pred --------------------------CCcccc-cCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence 000000 01234567899999999999999999877 899
Q ss_pred HHHHHHHH-HHhCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHH
Q psy16142 306 REQMNKAL-EKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDIS 384 (426)
Q Consensus 306 r~~~~~~~-~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~ 384 (426)
|+++++.+ +++|+|+.|+++|+||++.||++.|.+|+.++++.|+|+++|||+|||+|++||+||||||+++|++.||.
T Consensus 269 Rk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE 348 (457)
T KOG0559|consen 269 RKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIE 348 (457)
T ss_pred HHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCCeeEEeecceeEEEeecCCceeeeeecccccccHHHHH
Confidence 99998754 77999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 385 NDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
+ ++..|..|||+|+|..+||.|
T Consensus 349 ~-------------------~i~~L~~KAr~g~laiedM~g 370 (457)
T KOG0559|consen 349 K-------------------TIAGLGKKARDGKLAIEDMAG 370 (457)
T ss_pred H-------------------HHHHHHHhhccCceeeeeccC
Confidence 9 999999999999999999987
No 17
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=3.8e-41 Score=339.44 Aligned_cols=188 Identities=29% Similarity=0.462 Sum_probs=159.8
Q ss_pred CCccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhhhcCC--C--CCCCC---C-CCCC---CCCCceeecCC
Q psy16142 218 GTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGA--V--AAPSK---S-AKPT---ANGPFTDLPVS 286 (426)
Q Consensus 218 ~~~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~~~~~--~--~~~~~---~-~~~~---~~~~~~~~~ls 286 (426)
..++++||+||+||+|+||||++| +|||++|||+++||+++..... . .++.. . ..+. .....+.+||+
T Consensus 46 ~~~~~asP~aR~lA~e~gidl~~v-~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 124 (347)
T PRK14843 46 TNVVRISPLAKRIALEHNIAWQEI-QGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMT 124 (347)
T ss_pred cccccCCchhhHHHHHcCCCHhhC-CCCCCCCcccHHHHHHHHhccccCccccCCCCCccccCCCcccccCCcceeeeCc
Confidence 345679999999999999999999 9999999999999999842211 0 10000 0 0000 11224568999
Q ss_pred chhhHHHHHHHhhHHH---------------HHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeC--Cc
Q psy16142 287 GVRGVIAKRLLQSKQV---------------IKLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQD--TF 348 (426)
Q Consensus 287 ~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~--~~ 348 (426)
+|||.||++|++||++ +++|+++++.+.+ .|.|+|+++||+||++.||++||.||++|++ +.
T Consensus 125 ~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~ 204 (347)
T PRK14843 125 PMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKT 204 (347)
T ss_pred HHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCe
Confidence 9999999999999987 8899999875543 4889999999999999999999999999985 46
Q ss_pred eEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 349 IREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 349 i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
|++|+++||||||++++||+||||||||+|||.||++ ++++|++|||+|||+++||+|
T Consensus 205 i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~-------------------~i~~l~~~Ar~~kL~~~d~~G 262 (347)
T PRK14843 205 IITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVV-------------------AFKDVIGRTLDGKLAPSELQN 262 (347)
T ss_pred EEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHH-------------------HHHHHHHHHHcCCCCHHHhCC
Confidence 9999999999999999999999999999999999999 999999999999999999998
No 18
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=6.6e-41 Score=332.45 Aligned_cols=185 Identities=28% Similarity=0.434 Sum_probs=157.9
Q ss_pred cccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhhhcC----CCCCCC--C--CC-----CC---CCCCCceeec
Q psy16142 221 VYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAG----AVAAPS--K--SA-----KP---TANGPFTDLP 284 (426)
Q Consensus 221 ~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~~~~----~~~~~~--~--~~-----~~---~~~~~~~~~~ 284 (426)
+++||+||+||+|+||||++| +|||++|||+++||+++.... .+..+. + .. .+ ......+.+|
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v-~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLL-KGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREK 80 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHC-CCCCCCCceeHHHHHHHhhccccccCCccccccccccccccccCCcccccCCCceecc
Confidence 468999999999999999999 999999999999999974211 100000 0 00 00 0111245689
Q ss_pred CCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhcccccceeeCC-
Q psy16142 285 VSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEANSSWQDT- 347 (426)
Q Consensus 285 ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~- 347 (426)
|++||++||++|++||++ +++|+++++.+.+ .|.|+||++||+||++.||++||.+|++|+++
T Consensus 81 ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~ 160 (306)
T PRK11857 81 VAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEAT 160 (306)
T ss_pred CcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCC
Confidence 999999999999999987 7899999876544 58999999999999999999999999999853
Q ss_pred -ceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 348 -FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 348 -~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
.|+++++|||||||++++||+||||+|+|+|||.||++ ++++|++|||+|||+++||+|
T Consensus 161 ~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~-------------------~i~~l~~~Ar~~kL~~~dl~g 220 (306)
T PRK11857 161 SELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAK-------------------EISRLAKAARERKIKPDEMKG 220 (306)
T ss_pred CEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHH-------------------HHHHHHHHHHcCCCChhhcCC
Confidence 79999999999999999999999999999999999999 999999999999999999997
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=99.96 E-value=1.3e-29 Score=243.02 Aligned_cols=129 Identities=46% Similarity=0.731 Sum_probs=114.9
Q ss_pred CCceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccc
Q psy16142 278 GPFTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANS 342 (426)
Q Consensus 278 ~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~ 342 (426)
+.++++|++++||+||++|++||++ +++|+++++.....+.++|+++|++||++.||++||.+|+
T Consensus 2 ~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa 81 (231)
T PF00198_consen 2 GEETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNA 81 (231)
T ss_dssp SSCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred CCcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhcc
Confidence 3568899999999999999999977 8899999887776677999999999999999999999999
Q ss_pred eeeCCc-eEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcc
Q psy16142 343 SWQDTF-IREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH 421 (426)
Q Consensus 343 ~~~~~~-i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~ 421 (426)
+|+++. |++++++||||||++++||+||||+|+++|||.||++ ++++|++|||+|+|+++
T Consensus 82 ~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~-------------------e~~~l~~~ar~g~l~~~ 142 (231)
T PF00198_consen 82 SWDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAK-------------------ELRDLAERAREGKLTPE 142 (231)
T ss_dssp EEETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHH-------------------HHHHHHHHHHTT---GG
T ss_pred ccccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHH-------------------HHhhhhccchhhhhhhh
Confidence 999887 9999999999999999999999999999999999999 99999999999999999
Q ss_pred cccC
Q psy16142 422 EFQV 425 (426)
Q Consensus 422 e~~~ 425 (426)
||+|
T Consensus 143 d~~g 146 (231)
T PF00198_consen 143 DLQG 146 (231)
T ss_dssp GGSS
T ss_pred hhhc
Confidence 9998
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.92 E-value=2.1e-24 Score=233.51 Aligned_cols=127 Identities=24% Similarity=0.359 Sum_probs=119.3
Q ss_pred ceeecCCchhhHHHHHHHhhHHH--------------HHHHHHHHHHHH-HhCCcccHHHHHHHHHHHHhhhccccccee
Q psy16142 280 FTDLPVSGVRGVIAKRLLQSKQV--------------IKLREQMNKALE-KRGAKLSINDFIIKATALASRRVPEANSSW 344 (426)
Q Consensus 280 ~~~~~ls~~Rk~iA~~m~~S~~~--------------~~lr~~~~~~~~-~~~~~~s~~~~~~ka~~~al~~~p~~n~~~ 344 (426)
.+..||++++++||++|..|+.. +++|..+|+++. .+|.|+||++||+||+++||++||.+|++|
T Consensus 115 ~~~~~LrG~a~aiAkNM~aSL~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy 194 (1228)
T PRK12270 115 DEVTPLRGAAAAVAKNMDASLEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRHY 194 (1228)
T ss_pred cceeecccHHHHHHHHHHhhhccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhcee
Confidence 46789999999999999999876 889999998876 479999999999999999999999999999
Q ss_pred e--CCc--eEEcCCCcEEEEeecC-----CceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHc
Q psy16142 345 Q--DTF--IREYHSVDVSVAVNTD-----KGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKE 415 (426)
Q Consensus 345 ~--~~~--i~~~~~v~i~iAv~~~-----~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 415 (426)
+ ++. |+++++|||||||+++ +||+||+|++||+|++.+|.. ++++|+.|||+
T Consensus 195 ~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~-------------------ay~dLV~KAR~ 255 (1228)
T PRK12270 195 AEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWA-------------------AYEDIVRRARD 255 (1228)
T ss_pred eccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHH-------------------HHHHHHHHHHc
Confidence 8 444 9999999999999999 689999999999999999999 99999999999
Q ss_pred CCCCcccccC
Q psy16142 416 GKLQPHEFQV 425 (426)
Q Consensus 416 ~~l~~~e~~~ 425 (426)
|||+++||+|
T Consensus 256 gKLt~eD~~G 265 (1228)
T PRK12270 256 GKLTADDFQG 265 (1228)
T ss_pred CCCCHHHhCC
Confidence 9999999998
No 21
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.61 E-value=3.7e-16 Score=124.13 Aligned_cols=73 Identities=45% Similarity=0.740 Sum_probs=70.6
Q ss_pred eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
.+.+|.+|..+..+++.+|++++||.|++||.||+||+||+.++|+||++|+|.++++++|+ .|.+|++|++|
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~-~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGD-TVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTE-EEETTSEEEEE
T ss_pred EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCC-EECCCCEEEEC
Confidence 57899999999989999999999999999999999999999999999999999999999999 89999999986
No 22
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=99.59 E-value=2.1e-16 Score=159.93 Aligned_cols=98 Identities=26% Similarity=0.348 Sum_probs=87.6
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA 89 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~ 89 (426)
++|.+|+.++++|+.+||+ +||||||||+|+||+++|+|||||||+||+|+|++.++|++.++... ++..
T Consensus 234 ~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~~tpIInpPq~aIlgvG~i~~~pv~~~g~i~~r~~m~ 313 (347)
T PRK14843 234 MSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMS 313 (347)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccceeccccCCceEEEecCCcceeeEEECCeEEEEeEEE
Confidence 8999999999999999999 99999999999999999999999999999999999999998765332 5556
Q ss_pred CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
|++++| |+...+|+..+.+.+|.+..|+
T Consensus 314 lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll 346 (347)
T PRK14843 314 LGLTIDHRVVDGMAGAKFMKDLKELIETPISML 346 (347)
T ss_pred EEEecchhhhCcHHHHHHHHHHHHHhcCHHHhh
Confidence 777766 8899999999999999887654
No 23
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.58 E-value=2.7e-15 Score=150.91 Aligned_cols=77 Identities=30% Similarity=0.649 Sum_probs=74.0
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.+++||++|.+|++|+|.+|++++||.|++||.|++||+||++++|+||.+|+|.++++++|+ .|.+|++|+.++..
T Consensus 3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~-~v~~g~~l~~i~~~ 79 (371)
T PRK14875 3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGE-TLPVGALLAVVADA 79 (371)
T ss_pred eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCC-EeCCCCEEEEEecC
Confidence 478999999999999999999999999999999999999999999999999999999999999 89999999999653
No 24
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.55 E-value=7.9e-16 Score=165.80 Aligned_cols=101 Identities=26% Similarity=0.280 Sum_probs=89.1
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhcccccccccccc---Cc--e--
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREG---ND--R-- 84 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~---~~--~-- 84 (426)
++|.+|+.++++|+.+||+ +||||||||+|+||+++|+|||||||+||||+|++.++|++.+ +. .
T Consensus 469 ~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~~~~~g~~~~~~ 548 (590)
T TIGR02927 469 LSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGIDSIAI 548 (590)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEEEEeccCCCcccEEE
Confidence 8999999999999999999 9999999999999999999999999999999999999998852 21 1
Q ss_pred EeccCCCCCcc-----cceeeecccccCCccccCcchhhhh
Q psy16142 85 VALPALSPTME-----MGTIVSWAKKEGDKLNEGDLLAEIE 120 (426)
Q Consensus 85 i~mP~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~~ve 120 (426)
.+|..|++++| |+...+|+..+.++++.+..+..+|
T Consensus 549 ~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~~~~~~~~~ 589 (590)
T TIGR02927 549 RQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEEAAFEADLE 589 (590)
T ss_pred EeeEEEeeeccchhcCcHHHHHHHHHHHHHHhCcccccccC
Confidence 25556777766 8889999999999999987776654
No 25
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.55 E-value=7.7e-16 Score=153.41 Aligned_cols=98 Identities=22% Similarity=0.335 Sum_probs=87.4
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA 89 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~ 89 (426)
++|.+|++++++|..++|+ +||||||||+|++|+.+++|||||||+||+|+|++.++|++.++... ++..
T Consensus 192 ~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pvv~~g~i~~r~~m~ 271 (306)
T PRK11857 192 LSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVKNGQIVAGKVMH 271 (306)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccceecccCCCccceeecccceEEeEEECCEEEEeeeeE
Confidence 8999999999999999999 99999999999999999999999999999999999999998665433 4445
Q ss_pred CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
|++++| |+...+|+....+.+|.++.|.
T Consensus 272 lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~ 304 (306)
T PRK11857 272 LTVAADHRWIDGATIGRFASRVKELLEKPEILG 304 (306)
T ss_pred EeEecchhhhCcHHHHHHHHHHHHHhcCHHhhh
Confidence 666666 8899999999999999988664
No 26
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.55 E-value=8.1e-16 Score=159.84 Aligned_cols=98 Identities=23% Similarity=0.316 Sum_probs=88.0
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA 89 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~ 89 (426)
++|.+|++++++|+.++|+ +||||||||+|++|+.+|+|||||||+||+|+|++.++|++.++... ++..
T Consensus 348 ~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g~i~~r~~m~ 427 (463)
T PLN02226 348 MNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMY 427 (463)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEECCEEEEEeEEE
Confidence 8999999999999999998 99999999999999999999999999999999999999998765433 4555
Q ss_pred CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
|++++| |+...+|+..+.+.+|.++.|+
T Consensus 428 lsLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LL 460 (463)
T PLN02226 428 VALTYDHRLIDGREAVYFLRRVKDVVEDPQRLL 460 (463)
T ss_pred EeEecchhhhCcHHHHHHHHHHHHHhcCHHHHh
Confidence 677766 8899999999999999988654
No 27
>PRK06748 hypothetical protein; Validated
Probab=99.54 E-value=7.3e-15 Score=118.77 Aligned_cols=62 Identities=26% Similarity=0.348 Sum_probs=60.2
Q ss_pred ceeeecccccCCccccCcchhhhhc-ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIET-DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vet-dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
|++.+|++++||.|++||.|++||| ||+.++|+||.+|+|.++++++|+ .|++|++|++|++
T Consensus 13 G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd-~V~vG~~la~I~~ 75 (83)
T PRK06748 13 GKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQ-AIADQKLLITVRD 75 (83)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCC-EECCCCEEEEEEC
Confidence 9999999999999999999999999 899999999999999999999999 8999999999964
No 28
>KOG0559|consensus
Probab=99.53 E-value=1.4e-15 Score=149.87 Aligned_cols=98 Identities=27% Similarity=0.331 Sum_probs=90.0
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA 89 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~ 89 (426)
+++.+|..++..|..|||+ .||||||||.|.||+.|.||||||||.+|||+..+..+|.+.++..+ +|.+
T Consensus 342 Mn~adIE~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v~G~Vv~RPMMY 421 (457)
T KOG0559|consen 342 MNFADIEKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVVGGQVVPRPMMY 421 (457)
T ss_pred ccHHHHHHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceeeCCEeeeccceE
Confidence 8899999999999999999 99999999999999999999999999999999999999998887665 5667
Q ss_pred CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
+.++|| |-+.+.|++++.+.||.++.|+
T Consensus 422 vALTYDHRliDGREAVtFLr~iK~~VEDP~~ml 454 (457)
T KOG0559|consen 422 VALTYDHRLIDGREAVTFLRKIKEAVEDPRKML 454 (457)
T ss_pred EEeeccccccccHHHHHHHHHHHHHhhCHHHHh
Confidence 788877 6677899999999999998775
No 29
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=99.53 E-value=7.4e-16 Score=148.04 Aligned_cols=98 Identities=36% Similarity=0.519 Sum_probs=80.2
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA 89 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~ 89 (426)
++|.+|++++++|+.+||+ +||||||||+|++|+.+|+|||||||+||+++|++.++|++.++... ++..
T Consensus 118 ~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~~~pii~~pq~ail~vG~i~~~p~~~~~~~~~~~~~~ 197 (231)
T PF00198_consen 118 KSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVESFTPIINPPQVAILGVGAIRDRPVVEDGEVVVRPVMN 197 (231)
T ss_dssp S-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SCEE----TTSSEEEEEEEEEEEEEEETTCEEEEEEEE
T ss_pred ccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcceeEccCCcccceEEEecceEEEEEEEeccceeeEEEE
Confidence 8999999999999999999 89999999999999999999999999999999999999998766543 3445
Q ss_pred CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
+++++| |+...+|+..+.+.++.++.|+
T Consensus 198 lslt~DHRvidG~~aa~Fl~~l~~~le~p~~ll 230 (231)
T PF00198_consen 198 LSLTFDHRVIDGAEAARFLKDLKELLENPERLL 230 (231)
T ss_dssp EEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHC
T ss_pred eEEeccceEEcHHHHHHHHHHHHHHHhCHHHHh
Confidence 555555 8889999999999999887664
No 30
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.51 E-value=2.4e-15 Score=155.17 Aligned_cols=98 Identities=31% Similarity=0.374 Sum_probs=87.1
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA 89 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~ 89 (426)
++|.+|++++++|+.++|+ +||||||||+|++|+.+|+|||||||+||+|+|++.++|++.++... ++..
T Consensus 303 ~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~~g~i~~r~~m~ 382 (418)
T PTZ00144 303 KSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMY 382 (418)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEECCEEEEEeEEE
Confidence 8999999999999999999 99999999999999999999999999999999999999998765432 4445
Q ss_pred CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
|++++| |+...+|+....+.+|.++.|+
T Consensus 383 lsLs~DHRviDGa~AA~FL~~lk~~LE~P~~ll 415 (418)
T PTZ00144 383 LALTYDHRLIDGRDAVTFLKKIKDLIEDPARML 415 (418)
T ss_pred EEEecchhhhChHHHHHHHHHHHHHhcCHHHHh
Confidence 666665 8899999999999999988654
No 31
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.50 E-value=2.6e-15 Score=154.92 Aligned_cols=98 Identities=24% Similarity=0.292 Sum_probs=87.0
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA 89 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~ 89 (426)
++|.+|++++++|+.++|+ +||||||||+|+||+.+|+|||||||+||||+|++.++|++.++... ++..
T Consensus 288 ~sl~eIa~~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g~i~~r~~m~ 367 (403)
T TIGR01347 288 MSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNGQIEIRPMMY 367 (403)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEECCeEEEEEEEE
Confidence 8999999999999999999 89999999999999999999999999999999999999998665332 4445
Q ss_pred CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
|++++| |+...+|+....+.++.++.|+
T Consensus 368 lsLt~DHRviDGa~aa~Fl~~l~~~le~p~~ll 400 (403)
T TIGR01347 368 LALSYDHRLIDGKEAVTFLVTIKELLEDPRRLL 400 (403)
T ss_pred EEEEecchhhChHHHHHHHHHHHHHhcCHHHHH
Confidence 666666 8899999999999999988664
No 32
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.50 E-value=3e-15 Score=154.67 Aligned_cols=98 Identities=26% Similarity=0.340 Sum_probs=87.0
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA 89 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~ 89 (426)
++|.+|++++++|+.+||+ +||||||||+|++|+.+|+|||||||+||||+|++.++|++.++... ++..
T Consensus 292 ~sl~eIa~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g~i~~r~~~~ 371 (407)
T PRK05704 292 LSFAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNGQIVIRPMMY 371 (407)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECCEEEEEEEEE
Confidence 8999999999999999999 99999999999999999999999999999999999999988655332 4445
Q ss_pred CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
|++++| |+...+|+....+.++.++.|+
T Consensus 372 lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll 404 (407)
T PRK05704 372 LALSYDHRIIDGKEAVGFLVTIKELLEDPERLL 404 (407)
T ss_pred EEEEechhhhCcHHHHHHHHHHHHHhhCHHHHh
Confidence 666665 8899999999999999988664
No 33
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=99.50 E-value=3e-15 Score=155.12 Aligned_cols=98 Identities=19% Similarity=0.276 Sum_probs=87.1
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhcccccccccccc-Cce--Eecc
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREG-NDR--VALP 88 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~-~~~--i~mP 88 (426)
++|.+|++++++|+.++|+ +||||||||+|++|+.+|+|||||||+||||+|++.++|++.+ +.. .++.
T Consensus 299 ~sl~eI~~~~~~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m 378 (416)
T PLN02528 299 LSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIM 378 (416)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEE
Confidence 8999999999999999998 9999999999999999999999999999999999999998853 322 2555
Q ss_pred CCCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 89 ALSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 89 ~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
.|++++| |+...+|++...+.++.+..|+
T Consensus 379 ~lslt~DHRviDGa~aa~Fl~~lk~~le~P~~ll 412 (416)
T PLN02528 379 TVTIGADHRVLDGATVARFCNEWKSYVEKPELLM 412 (416)
T ss_pred EEeEeccchhcCcHHHHHHHHHHHHHHhCHHHHH
Confidence 6677766 8888999999999999988765
No 34
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=99.48 E-value=6.8e-15 Score=153.33 Aligned_cols=98 Identities=35% Similarity=0.491 Sum_probs=87.1
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCc---e--Ee
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGND---R--VA 86 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~---~--i~ 86 (426)
++|.+|++++++|+.++|+ +||||||||+|++|+.+|+|||||||+||||+|++.++|++.++. . .+
T Consensus 319 ~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~~~~~~~i~~~~ 398 (435)
T TIGR01349 319 KGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVAS 398 (435)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEeCCccceeEEee
Confidence 8999999999999999999 899999999999999999999999999999999999999885543 2 25
Q ss_pred ccCCCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 87 LPALSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 87 mP~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
|..|++++| |+...+|+..+.+.+|.++.|+
T Consensus 399 ~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll 434 (435)
T TIGR01349 399 IMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEML 434 (435)
T ss_pred eEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhh
Confidence 556777766 8889999999999999887654
No 35
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=99.47 E-value=9e-15 Score=154.86 Aligned_cols=98 Identities=32% Similarity=0.471 Sum_probs=86.5
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCc-ccccccceeeeCCccchhhhccccccccccc--cCce--Ee
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLG-MFGIKNFSAIINPPQACILAVGSLSQRLVRE--GNDR--VA 86 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G-~~G~~~~tpIInppq~aIlgvg~~~~~p~v~--~~~~--i~ 86 (426)
++|.+|++++++|+.+||+ +||||||||+| +||+.+|||||||||+||||+|++.++|++. ++.. .+
T Consensus 423 ~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~i~~r~ 502 (539)
T PLN02744 423 KGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFAS 502 (539)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccCCeEEEee
Confidence 8999999999999999998 99999999998 8999999999999999999999999998863 4322 25
Q ss_pred ccCCCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 87 LPALSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 87 mP~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
+..|++++| |+...+|+....+.+|.++.|+
T Consensus 503 ~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~ll 538 (539)
T PLN02744 503 FMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESML 538 (539)
T ss_pred eeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhh
Confidence 556777766 8899999999999999988664
No 36
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.46 E-value=1e-14 Score=156.07 Aligned_cols=98 Identities=22% Similarity=0.263 Sum_probs=86.9
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA 89 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~ 89 (426)
++|.+|++++++|+.+||+ +||||||||+|+||+.+|+|||||||+|||++|+++++|++.++... .+..
T Consensus 433 ~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~~~~~~~~m~ 512 (546)
T TIGR01348 433 KGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLP 512 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECCEEEEEEEEE
Confidence 8999999999999999999 89999999999999999999999999999999999999988654322 4555
Q ss_pred CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
|++++| |+...+|+..+.+.+|.++.|+
T Consensus 513 ltls~DHRviDGa~aa~Fl~~~~~~le~P~~ll 545 (546)
T TIGR01348 513 LSLSYDHRVIDGADAARFTTYICESLADIRRLL 545 (546)
T ss_pred EeEeccchhcChHHHHHHHHHHHHHHhCHHhhh
Confidence 666666 8888999999999999887664
No 37
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.40 E-value=2.1e-13 Score=121.38 Aligned_cols=61 Identities=33% Similarity=0.465 Sum_probs=59.5
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
|++.+.++++||.|++||.||+||+|||+++|+||.+|+|.+|++++|+ .|..|++|+.|+
T Consensus 79 Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~-~Ve~G~~L~~I~ 139 (140)
T COG0511 79 GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGD-PVEYGDPLAVIE 139 (140)
T ss_pred eEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCC-ccCCCCEEEEec
Confidence 8899999999999999999999999999999999999999999999999 899999999985
No 38
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.37 E-value=2e-12 Score=135.73 Aligned_cols=83 Identities=49% Similarity=0.822 Sum_probs=76.3
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..+.||.++.+++++++.+|++++||.|+.||.|++|||||++++++||.+|+|.++++++|++.|++|++|++|+++++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 36889999999999999999999999999999999999999999999999999999999999526999999999987655
Q ss_pred chh
Q psy16142 163 DVA 165 (426)
Q Consensus 163 ~~~ 165 (426)
+..
T Consensus 83 ~~~ 85 (464)
T PRK11892 83 SAS 85 (464)
T ss_pred ccc
Confidence 433
No 39
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.36 E-value=7.5e-13 Score=104.22 Aligned_cols=61 Identities=25% Similarity=0.451 Sum_probs=59.3
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
|++.+|++++||.|++||.|+++|+||++++|.||.+|+|.++++++|+ .|..|++|++|+
T Consensus 11 G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~-~V~~G~~l~~i~ 71 (71)
T PRK05889 11 ASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGD-VIQAGDLIAVIS 71 (71)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCC-EECCCCEEEEEC
Confidence 8999999999999999999999999999999999999999999999999 899999999883
No 40
>KOG0558|consensus
Probab=99.32 E-value=3.8e-13 Score=132.23 Aligned_cols=98 Identities=20% Similarity=0.282 Sum_probs=86.9
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE------
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV------ 85 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i------ 85 (426)
.+|+||++++++|....+. .||||||||+|.+|++|..|+|+|||++|.++|++...|.+....++
T Consensus 357 ~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~a~IM 436 (474)
T KOG0558|consen 357 LSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYPASIM 436 (474)
T ss_pred hhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCCEEEeEEE
Confidence 8999999999999999988 99999999999999999999999999999999999999999765443
Q ss_pred --eccCCCCCcccceeeecccccCCccccCcchh
Q psy16142 86 --ALPALSPTMEMGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 86 --~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
.....+.-+||+++.+|......++|.+..++
T Consensus 437 ~VswsADHRViDGaTmarFsn~WK~YlE~Pa~ml 470 (474)
T KOG0558|consen 437 MVSWSADHRVIDGATMARFSNQWKEYLENPALML 470 (474)
T ss_pred EEEeecCceeeccHHHHHHHHHHHHHhhCHHHHh
Confidence 22344555779999999999999999988765
No 41
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.31 E-value=1.4e-12 Score=90.68 Aligned_cols=38 Identities=50% Similarity=0.721 Sum_probs=33.9
Q ss_pred ccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhh
Q psy16142 220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSK 258 (426)
Q Consensus 220 ~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~ 258 (426)
++.+||+||+||+|+|||+++| .|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v-~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQV-KGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGS-SSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccc-cccCCCCcEeHHHhhC
Confidence 4678999999999999999999 9999999999999984
No 42
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.31 E-value=5.6e-13 Score=137.77 Aligned_cols=98 Identities=33% Similarity=0.437 Sum_probs=87.6
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCce--EeccC
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDR--VALPA 89 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~--i~mP~ 89 (426)
+++.+|..++.+|+.++|+ +||||||||+|++|+.+|+||||+||++|||+|.+..+|.+.++.. .+|..
T Consensus 290 ~~~~~i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~~~~i~~~~mm~ 369 (404)
T COG0508 290 KSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRPMMY 369 (404)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEecCceeeEeeEe
Confidence 8999999999999999999 9999999999999999999999999999999999999998876422 25667
Q ss_pred CCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 90 LSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
|++++| |....+|++.+.+.++.+..|+
T Consensus 370 lsls~DHRviDGa~aa~Fl~~ik~~le~p~~ll 402 (404)
T COG0508 370 LSLSYDHRVIDGAEAARFLVALKELLEDPERLL 402 (404)
T ss_pred ecccccccccccHHHHHHHHHHHHHhcChhhhh
Confidence 777776 7788999999999999887765
No 43
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.24 E-value=9.8e-12 Score=97.43 Aligned_cols=61 Identities=28% Similarity=0.337 Sum_probs=59.3
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
|.+.+|+++.||.|++||.|+++|+||+.+++.||.+|+|.++++++|+ .|..|++|++|+
T Consensus 10 G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~-~V~~g~~l~~ie 70 (70)
T PRK08225 10 GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGD-FVNEGDVLLEIE 70 (70)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCC-EECCCCEEEEEC
Confidence 8999999999999999999999999999999999999999999999999 899999999984
No 44
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.24 E-value=1.1e-11 Score=97.44 Aligned_cols=72 Identities=42% Similarity=0.664 Sum_probs=67.7
Q ss_pred EeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 85 i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
+.+|.++..+..+.+.+|++++|+.|+.||.|+.+|+||+.++|.||.+|+|.+++++.|+ .+..|+.|+.|
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~-~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGT-KVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEC
Confidence 4578888888889999999999999999999999999999999999999999999999999 79999999874
No 45
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.19 E-value=2.3e-11 Score=132.64 Aligned_cols=74 Identities=27% Similarity=0.450 Sum_probs=71.5
Q ss_pred eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.+.||.|+ +++|.|.+|++++||.|++||+|++|||||++++|+||.+|+|.++++++|+ .|++|++|++|+.+
T Consensus 4 ~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~-~V~~G~~l~~i~~~ 77 (633)
T PRK11854 4 EIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGD-KVETGALIMIFESA 77 (633)
T ss_pred eEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCC-EEeCCCEEEEEecc
Confidence 57899999 8999999999999999999999999999999999999999999999999999 89999999999765
No 46
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=99.18 E-value=6.2e-12 Score=137.74 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=83.8
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhcccccccccccc--------Cc
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREG--------ND 83 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~--------~~ 83 (426)
+++.+|.+++++|+.|||+ +||||||||+|++|+.+|+|||||||+||+|+|++...+.+.. -.
T Consensus 237 l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~ 316 (1228)
T PRK12270 237 MDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELG 316 (1228)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecCCcccccceeeeecCCceEEEeccccccCceecCcccccccccc
Confidence 8999999999999999999 9999999999999999999999999999999999988777632 12
Q ss_pred eEeccCCCCCcc-----cceeeecccccCCccccCcch
Q psy16142 84 RVALPALSPTME-----MGTIVSWAKKEGDKLNEGDLL 116 (426)
Q Consensus 84 ~i~mP~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L 116 (426)
.-+|..|..++| |+...+|++.+.+.++-.|-.
T Consensus 317 i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLeG~d~F 354 (1228)
T PRK12270 317 ISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLLGEDGF 354 (1228)
T ss_pred eeeeEEeeeeccceeeccHhHHHHHHHHHHHHhcccch
Confidence 236777777777 788899999999999844433
No 47
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.15 E-value=4.2e-11 Score=105.04 Aligned_cols=60 Identities=27% Similarity=0.290 Sum_probs=58.8
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
|++.+|++++||.|++||.|+++|+||+.++|.||++|+|.++++++|+ .|..|++|+.|
T Consensus 70 G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd-~V~~G~~L~~I 129 (130)
T PRK06549 70 GTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQ-VVNPGDGLITI 129 (130)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCC-EeCCCCEEEEe
Confidence 8999999999999999999999999999999999999999999999999 89999999987
No 48
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.08 E-value=1.3e-10 Score=104.89 Aligned_cols=60 Identities=28% Similarity=0.443 Sum_probs=58.8
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
|++.+|++++||.|++||.|+++|+|||+++|.||.+|+|.++++++|+ .|..|++|+.|
T Consensus 93 G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd-~V~~Gq~L~~I 152 (153)
T PRK05641 93 GKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGD-TVDTGQPLIEL 152 (153)
T ss_pred eEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCC-EECCCCEEEEe
Confidence 8999999999999999999999999999999999999999999999999 89999999987
No 49
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.07 E-value=1.2e-10 Score=105.62 Aligned_cols=75 Identities=23% Similarity=0.276 Sum_probs=62.2
Q ss_pred ceEeccCCCCCcc-cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 83 DRVALPALSPTME-MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 83 ~~i~mP~lg~s~d-~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
..+.-|..|..+. ...-..|++++||.|++||.||.||+||+.++|+|+++|+|.+|+++.|+ .|..|++|++|+
T Consensus 81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~-~V~~Gq~L~~i~ 156 (156)
T TIGR00531 81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQ-PVEYGQPLIVIE 156 (156)
T ss_pred CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCC-EECCCCEEEEEC
Confidence 3455554443322 12224699999999999999999999999999999999999999999999 899999999873
No 50
>KOG0557|consensus
Probab=99.07 E-value=3.3e-11 Score=123.21 Aligned_cols=98 Identities=34% Similarity=0.481 Sum_probs=83.7
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhcccccccccc--c--------c
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVR--E--------G 81 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v--~--------~ 81 (426)
..|.+|..++.+|+.+||. +||||||||+|+||++.|+.||||||.|||++|...+..+. . .
T Consensus 354 kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~~~ 433 (470)
T KOG0557|consen 354 KGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVIN 433 (470)
T ss_pred ccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccceee
Confidence 7789999999999999999 99999999999999999999999999999999988766442 1 1
Q ss_pred CceEeccCCCCCcccceeeecccccCCccccCcchh
Q psy16142 82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
.+.+.+..-+..++|+...+|+....+.+|.+..|+
T Consensus 434 ~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~l 469 (470)
T KOG0557|consen 434 AMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLL 469 (470)
T ss_pred eeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhh
Confidence 234555666677779999999999999999887664
No 51
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.05 E-value=1.6e-10 Score=104.55 Aligned_cols=76 Identities=25% Similarity=0.313 Sum_probs=65.0
Q ss_pred CceEeccCCCCCcc-cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 82 NDRVALPALSPTME-MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 82 ~~~i~mP~lg~s~d-~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
...|.-|..|..|. ...-..|++++||.|++||.||.||+||+.++|+||++|+|.+++++.|+ .|..|++|++|+
T Consensus 79 ~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~-~V~~Gq~L~~i~ 155 (155)
T PRK06302 79 GHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQ-PVEFGQPLFVIE 155 (155)
T ss_pred CCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCC-EeCCCCEEEEeC
Confidence 34566676665443 23345799999999999999999999999999999999999999999999 899999999873
No 52
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=99.04 E-value=4.2e-11 Score=124.36 Aligned_cols=99 Identities=34% Similarity=0.494 Sum_probs=84.4
Q ss_pred cccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--ecc
Q psy16142 19 HFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALP 88 (426)
Q Consensus 19 ~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP 88 (426)
++++.+|.+++++++.++|+ +||||||||+|++|..+++|+||+||+||+++|++.+.|++.++... .+.
T Consensus 296 ~~sl~ei~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~~g~~~~~~~m 375 (411)
T PRK11856 296 KKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDGEIVVRKVM 375 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEECCEEEEEEEE
Confidence 58999999999999999998 79999999999999999999999999999999999999887654322 233
Q ss_pred CCCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 89 ALSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 89 ~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
.|+.++| |..+.+|+....+.++.+..|+
T Consensus 376 ~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll 409 (411)
T PRK11856 376 PLSLSFDHRVIDGADAARFLKALKELLENPALLL 409 (411)
T ss_pred EEeEEeehhhcCcHHHHHHHHHHHHHHhCHHHHh
Confidence 3555544 8888999999999998887664
No 53
>PRK07051 hypothetical protein; Validated
Probab=99.03 E-value=3.6e-10 Score=91.09 Aligned_cols=57 Identities=26% Similarity=0.348 Sum_probs=55.2
Q ss_pred ecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 101 SWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 101 ~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
.|++++||.|+.||.++++|+||+.++|.||.+|+|.++++++|+ .|..|++|++|+
T Consensus 23 ~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~-~V~~G~~l~~i~ 79 (80)
T PRK07051 23 PPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGE-PVEAGQVLARIE 79 (80)
T ss_pred CCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcC-EECCCCEEEEEe
Confidence 499999999999999999999999999999999999999999999 899999999985
No 54
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.02 E-value=2.6e-10 Score=109.77 Aligned_cols=57 Identities=26% Similarity=0.369 Sum_probs=55.2
Q ss_pred ecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 101 SWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 101 ~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
.|++++||.|++||.|++||+||+.++|+|+++|+|.+|++++|+ .|.+|++|++|+
T Consensus 217 ~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD-~V~vGqpL~~IE 273 (274)
T PLN02983 217 PPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGK-PVSVDTPLFVIE 273 (274)
T ss_pred cceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCC-EeCCCCEEEEec
Confidence 399999999999999999999999999999999999999999999 899999999984
No 55
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=98.96 E-value=6.1e-10 Score=119.86 Aligned_cols=62 Identities=26% Similarity=0.453 Sum_probs=60.3
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
|.+.+|++++||.|++||.|++||+|||+++|.||.+|+|.++++++|+ .|.+|++|+.|+.
T Consensus 534 G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd-~V~~G~~L~~I~~ 595 (596)
T PRK14042 534 GSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGD-KVTPGQVLIRVEV 595 (596)
T ss_pred eEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcC-EECCCCEEEEEeC
Confidence 8999999999999999999999999999999999999999999999999 8999999999964
No 56
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.95 E-value=8.6e-10 Score=118.54 Aligned_cols=76 Identities=32% Similarity=0.566 Sum_probs=72.4
Q ss_pred eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.++||.++. +.+|++..|++++||.|+.||.|++||+||+.++|.|+++|+|.++++++|+ .|.+|++|++|+..+
T Consensus 4 ~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd-~V~~G~~L~~i~~~~ 79 (547)
T PRK11855 4 EFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGD-TVSVGGLLAVIEAAG 79 (547)
T ss_pred eeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCC-EecCCceeeEecccc
Confidence 578999999 9999999999999999999999999999999999999999999999999999 899999999997543
No 57
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=98.94 E-value=1e-09 Score=83.85 Aligned_cols=60 Identities=38% Similarity=0.576 Sum_probs=57.6
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
|.+.+|+++.|+.|++||.|+.++++|+..+|.||++|+|.+++++.|+ .|..|++|+.|
T Consensus 8 G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~-~V~~G~~l~~i 67 (67)
T cd06850 8 GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGD-QVEAGQLLVVI 67 (67)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCC-EECCCCEEEEC
Confidence 7888999999999999999999999999999999999999999999999 89999999875
No 58
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.91 E-value=8.1e-10 Score=115.39 Aligned_cols=69 Identities=35% Similarity=0.581 Sum_probs=64.7
Q ss_pred cCceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 81 GNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 81 ~~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
+....+|| |+|..+.++.|+.|.+||+|+++|+|||++.|.||.+|+|+++.+.+|+ .|..|++|++|+
T Consensus 576 ~~l~aPMp--------G~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd-~V~~g~vLve~~ 644 (645)
T COG4770 576 GELLAPMP--------GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGD-QVAVGTVLVEFE 644 (645)
T ss_pred CceecCCC--------ceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCC-ccccCceEEEec
Confidence 33455888 9999999999999999999999999999999999999999999999999 899999999985
No 59
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.78 E-value=4.6e-09 Score=121.61 Aligned_cols=61 Identities=28% Similarity=0.440 Sum_probs=59.4
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
|.+.+|++++||.|++||.|++||+|||+++|.||.+|+|+++++++|+ .|.+|++|+.|+
T Consensus 1141 G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~-~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1141 GNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGD-MVDAGDIVAVLE 1201 (1201)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCC-EeCCCCEEEEeC
Confidence 8999999999999999999999999999999999999999999999999 899999999884
No 60
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.75 E-value=4.8e-09 Score=113.14 Aligned_cols=57 Identities=30% Similarity=0.527 Sum_probs=55.6
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLV 154 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l 154 (426)
|.|.+|++++||.|++||+|++||+|||+++|.||.+|+|.++++++|+ .|.+|++|
T Consensus 526 G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd-~V~~G~~l 582 (582)
T TIGR01108 526 GSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGD-AVSVGQVL 582 (582)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCC-EeCCCCCC
Confidence 9999999999999999999999999999999999999999999999999 89999975
No 61
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.71 E-value=1.3e-08 Score=110.07 Aligned_cols=60 Identities=27% Similarity=0.429 Sum_probs=58.9
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
|.+.+|++++||.|++||.|+++|+|||+++|.||.+|+|.++++++|+ .|..|++|++|
T Consensus 533 G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~G~~L~~I 592 (593)
T PRK14040 533 GNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGD-AVAVGDTLLTL 592 (593)
T ss_pred EEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEe
Confidence 8999999999999999999999999999999999999999999999999 89999999987
No 62
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.68 E-value=1.5e-08 Score=116.44 Aligned_cols=61 Identities=26% Similarity=0.511 Sum_probs=59.3
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
|.+.+|++++||.|++||.|++||+|||+++|.||.+|+|.++++++|+ .|.+|++|++|+
T Consensus 1083 G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~-~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGE-QIDAKDLLLVLE 1143 (1143)
T ss_pred cEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCC-EECCCCEEEEeC
Confidence 8999999999999999999999999999999999999999999999999 899999999884
No 63
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.67 E-value=4.9e-08 Score=74.22 Aligned_cols=72 Identities=53% Similarity=0.918 Sum_probs=67.8
Q ss_pred EeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 85 i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
+.+|.++.+...+.+..|++..|+.+..++.++.++++|+.+.+.++.+|++.+..+.+|+ .+..|++|++|
T Consensus 3 ~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~-~v~~g~~l~~~ 74 (74)
T cd06849 3 IKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGD-TVPVGQVIAVI 74 (74)
T ss_pred EECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcC-EeCCCCEEEEC
Confidence 5678888888889999999999999999999999999999999999999999999999999 89999999874
No 64
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.59 E-value=8.3e-08 Score=103.91 Aligned_cols=61 Identities=34% Similarity=0.507 Sum_probs=59.5
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
|.+.+|++++||.|++||+|+++|+||++++|.||.+|+|.++++++|+ .|..|++|+.|+
T Consensus 531 G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~-~V~~G~~L~~i~ 591 (592)
T PRK09282 531 GTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGD-RVNPGDVLMEIE 591 (592)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCC-EeCCCCEEEEec
Confidence 7999999999999999999999999999999999999999999999999 899999999985
No 65
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.55 E-value=1.1e-07 Score=109.75 Aligned_cols=61 Identities=36% Similarity=0.569 Sum_probs=59.6
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
|.+.+|++++||.|++||.|+++|+|||+++|.||.+|+|.++++++|+ .|..|++|+.|+
T Consensus 1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~-~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGD-QVEAGDLLVELE 1145 (1146)
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCC-EECCCCEEEEEc
Confidence 8999999999999999999999999999999999999999999999999 899999999985
No 66
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.39 E-value=3.2e-07 Score=99.24 Aligned_cols=61 Identities=33% Similarity=0.564 Sum_probs=59.2
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
|.+++..++.||.|++||.|+.+|+|||+..|.||.+|+|.+++|+.|+ .|..|+.|..++
T Consensus 1088 G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd-~i~~gDLLi~~~ 1148 (1149)
T COG1038 1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGD-QIDGGDLLVVVE 1148 (1149)
T ss_pred CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCC-ccccCceEEEcc
Confidence 8999999999999999999999999999999999999999999999999 899999999874
No 67
>KOG0369|consensus
Probab=98.06 E-value=3.9e-06 Score=89.44 Aligned_cols=69 Identities=30% Similarity=0.490 Sum_probs=63.7
Q ss_pred cCceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 81 GNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 81 ~~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
.++-.+|| |++.+..+++|+.|++||+|+++.+|||++.|.||.+|+|+++.+..|+ .+..|+.+++++
T Consensus 1107 g~igAPMp--------G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~-~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1107 GHIGAPMP--------GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGT-KVEGGDLIVELE 1175 (1176)
T ss_pred ccccCCCC--------CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCC-cccccceEEEcc
Confidence 34445777 8999999999999999999999999999999999999999999999999 799999999885
No 68
>KOG0238|consensus
Probab=97.99 E-value=5.2e-06 Score=86.29 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=58.9
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
|.|.+++++.||.|.+||.++++++|||+..+.||.+|+|+.+.++.|+ +|.-|.+|.+++
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~-~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGA-TVGDGAVLVEFE 670 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCc-ccCCCceEEEeC
Confidence 8999999999999999999999999999999999999999999999999 899999998873
No 69
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=97.76 E-value=1.5e-05 Score=66.32 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=42.3
Q ss_pred eecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCC
Q psy16142 100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS 145 (426)
Q Consensus 100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~ 145 (426)
.-|+.++|+.|+.|+.+++||++|+..+|.||.+|+|.++..+.++
T Consensus 33 ~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~ 78 (96)
T cd06848 33 FVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD 78 (96)
T ss_pred EEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence 3478888999999999999999999999999999999999877776
No 70
>KOG0368|consensus
Probab=97.54 E-value=8.7e-05 Score=84.88 Aligned_cols=66 Identities=20% Similarity=0.438 Sum_probs=61.5
Q ss_pred ccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 95 EMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 95 d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..|.+.+|+++.|+.|+.||+.++||.|||.|.+.|+.+|+| +...++|+ .+.+|++|+.+..++.
T Consensus 692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~-~i~aG~vlakL~lDdp 757 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGD-AIEAGSVLAKLTLDDP 757 (2196)
T ss_pred CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCC-ccCccceeEEeecCCh
Confidence 368999999999999999999999999999999999999999 78899999 8999999999986543
No 71
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.46 E-value=6e-05 Score=64.49 Aligned_cols=42 Identities=19% Similarity=0.382 Sum_probs=37.5
Q ss_pred cccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCC
Q psy16142 104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS 145 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~ 145 (426)
.++|+.|++||.+++||++|+..+|.||.+|+|.+++-+..+
T Consensus 38 p~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~ 79 (110)
T TIGR03077 38 PSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED 79 (110)
T ss_pred CCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 377999999999999999999999999999999999654443
No 72
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.26 E-value=0.00016 Score=62.21 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=34.5
Q ss_pred ccCCccccCcchhhhhcccccceeecCCCeEEEEEe
Q psy16142 105 KEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKIL 140 (426)
Q Consensus 105 ~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~ 140 (426)
++|+.|++||.+++||++|+..+|.||.+|+|.++.
T Consensus 41 ~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 41 SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 779999999999999999999999999999999884
No 73
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.25 E-value=0.00038 Score=51.00 Aligned_cols=35 Identities=17% Similarity=0.429 Sum_probs=32.0
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
..|.+|.+|+|.++++++|+ .|+.|++|++|+..+
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~-~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQ-QVKKGDVLLVLDSPD 37 (50)
T ss_pred EEEeCCCCEEEEEEEecCCC-EEcCCCEEEEECcHH
Confidence 57899999999999999999 899999999997643
No 74
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.12 E-value=0.00046 Score=60.56 Aligned_cols=59 Identities=22% Similarity=0.329 Sum_probs=46.9
Q ss_pred eecccccCCccccCcchhhhhcccccceeecCCCeEEEEE---eecCCCcccc---CCc-EEEEEEcC
Q psy16142 100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKI---LVPAGSKDVP---IGK-LVCIIVEN 160 (426)
Q Consensus 100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i---~v~~G~~~v~---vG~-~l~~i~~~ 160 (426)
+.| .++|+.|++||.++.||++|+..+|.||.+|+|.++ +....+ .+. .|+ -|+.+...
T Consensus 42 v~l-p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~-~ln~~p~~~gWl~~v~~~ 107 (127)
T PRK01202 42 VEL-PEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPE-LVNEDPYGEGWLFKIKPS 107 (127)
T ss_pred EEc-CCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcH-hhcCCCCCCceEEEEEeC
Confidence 343 378999999999999999999999999999999999 444444 344 444 78888654
No 75
>PRK13380 glycine cleavage system protein H; Provisional
Probab=96.99 E-value=0.00038 Score=62.37 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=41.4
Q ss_pred ceeeeccc-ccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCC
Q psy16142 97 GTIVSWAK-KEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS 145 (426)
Q Consensus 97 g~i~~w~v-~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~ 145 (426)
|.|..+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++....-+
T Consensus 44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 45555544 58999999999999999999999999999999998766443
No 76
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=96.85 E-value=0.0014 Score=65.82 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=32.4
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..|.||.+|+|..+.+.+|+ .|..|++|+.|.+.+.
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~~~ 240 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQ-VVSPGQPLMAVVPAEQ 240 (334)
T ss_pred cEEEcCCCcEEEEEecCCCC-EeCCCCeeEEEEcCCc
Confidence 46999999999999999999 8999999999986543
No 77
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=96.80 E-value=0.0019 Score=67.30 Aligned_cols=66 Identities=20% Similarity=0.325 Sum_probs=56.4
Q ss_pred cceeeecc-cccCCccccCcchhhhhcc------------------------------------------------cccc
Q psy16142 96 MGTIVSWA-KKEGDKLNEGDLLAEIETD------------------------------------------------KATM 126 (426)
Q Consensus 96 ~g~i~~w~-v~vGd~Ve~gd~L~~vetd------------------------------------------------K~~~ 126 (426)
.|.|.+.+ +++||.|++||+|++|++. ....
T Consensus 131 ~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~~ 210 (409)
T PRK09783 131 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTRF 210 (409)
T ss_pred CEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCcE
Confidence 57888988 9999999999999999731 0134
Q ss_pred eeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 127 GFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 127 ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
.|.||++|+|.+..+.+|+ .|..|++|+.|...+.
T Consensus 211 ~I~AP~dGvV~~~~v~~G~-~V~~g~~L~~I~d~~~ 245 (409)
T PRK09783 211 TLKAPIDGVITAFDLRAGM-NIAKDNVVAKIQGMDP 245 (409)
T ss_pred EEECCCCeEEEEEECCCCC-EECCCCeEEEEEcCCe
Confidence 7999999999999999999 8999999999976543
No 78
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=96.75 E-value=0.0015 Score=64.73 Aligned_cols=65 Identities=28% Similarity=0.511 Sum_probs=56.0
Q ss_pred cceeeecccccCCccccCcchhhhhcccc---------------------------------------------------
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKA--------------------------------------------------- 124 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~--------------------------------------------------- 124 (426)
+|.+.+++++.||.|++||+|+.+++.-.
T Consensus 34 ~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~ 113 (322)
T TIGR01730 34 AGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEA 113 (322)
T ss_pred cEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 48899999999999999999998864211
Q ss_pred --------------------cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 --------------------TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 --------------------~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.||.+|+|..+.+.+|+ .|..|++|+.|...+
T Consensus 114 ~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 114 AQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGA-YVTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCc-eeCCCCcEEEEEcCC
Confidence 236999999999999999999 899999999997543
No 79
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=96.72 E-value=0.00079 Score=59.08 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=36.6
Q ss_pred cccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCC
Q psy16142 104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G 144 (426)
.++|+.|++|+.++.||++|+..+|.||.+|+|.++.-..-
T Consensus 44 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~ 84 (127)
T TIGR00527 44 PEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALE 84 (127)
T ss_pred CCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhh
Confidence 36899999999999999999999999999999988864433
No 80
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=96.58 E-value=0.0027 Score=63.74 Aligned_cols=65 Identities=17% Similarity=0.355 Sum_probs=55.7
Q ss_pred cceeeecccccCCccccCcchhhhhccc----------------------------------------------------
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDK---------------------------------------------------- 123 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK---------------------------------------------------- 123 (426)
.|.|.++++++||.|++||+|+.++...
T Consensus 55 ~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~a 134 (310)
T PRK10559 55 SGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQTV 134 (310)
T ss_pred ceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999886521
Q ss_pred ------------------ccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 124 ------------------ATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 124 ------------------~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
-...|.||++|+|.++.+++|+ .|..|++|+.|...+
T Consensus 135 ~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~-~V~~g~~l~~Iv~~~ 189 (310)
T PRK10559 135 LHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGE-FITRGSTAVALVKQN 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCC-EecCCCeeEEEEeCC
Confidence 0246899999999999999999 899999999987543
No 81
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=96.53 E-value=0.0031 Score=63.97 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=31.8
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
..|.||++|+|.++.+.+|+ .|..|++|+.|...+
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~-~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGE-FAAPMQPIFTLIDTD 243 (346)
T ss_pred CEEECCCCcEEEeeecCCCC-CcCCCCeEEEEecCC
Confidence 36899999999999999999 899999999997654
No 82
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=96.47 E-value=0.0055 Score=47.94 Aligned_cols=35 Identities=9% Similarity=0.191 Sum_probs=31.9
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
-.|.||.+|+|.++++++|+ .|+.|++|+.++...
T Consensus 3 ~~v~a~~~G~i~~~~v~~Gd-~V~~g~~l~~ve~~K 37 (71)
T PRK05889 3 EDVRAEIVASVLEVVVNEGD-QIGKGDTLVLLESMK 37 (71)
T ss_pred cEEeCCCCEEEEEEEeCCCC-EECCCCEEEEEEecc
Confidence 35899999999999999999 899999999997754
No 83
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=96.24 E-value=0.0051 Score=62.02 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=31.7
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
..|.||++|+|..+.+.+|+ .|..|++|+.|...+
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~-~V~~G~~l~~I~~~~ 238 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGT-MLNAGSTVFTLSLTR 238 (331)
T ss_pred CEEECCCCeEEEeccCCCCC-CcCCCCeEEEEecCC
Confidence 47999999999999999999 899999999997543
No 84
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=96.11 E-value=0.0072 Score=62.62 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=32.3
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..|.||.+|+|..+.+++|+ .|..|++|+.|.+.+.
T Consensus 216 t~I~AP~dG~V~~~~v~~G~-~V~~g~pl~~Iv~~~~ 251 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGA-QISPTTPLMAVVPATN 251 (390)
T ss_pred CEEECCCCeEEEEEecCCCC-EeCCCCeEEEEEeCCc
Confidence 36999999999999999999 8999999999976543
No 85
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=96.04 E-value=0.0075 Score=62.16 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=54.4
Q ss_pred cceeeecccccCCccccCcchhhhhcccc---------------------------------------------------
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKA--------------------------------------------------- 124 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~--------------------------------------------------- 124 (426)
.|.|.++++++||.|++||+|+.+++.-.
T Consensus 71 ~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~ 150 (385)
T PRK09578 71 AGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQ 150 (385)
T ss_pred cEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999998865311
Q ss_pred --------------------cceeecCCCeEEEEEeecCCCccccCC--cEEEEEEcCC
Q psy16142 125 --------------------TMGFETPEEGYLAKILVPAGSKDVPIG--KLVCIIVENE 161 (426)
Q Consensus 125 --------------------~~ei~a~~~G~v~~i~v~~G~~~v~vG--~~l~~i~~~~ 161 (426)
...|.||++|+|.+.++.+|+ .|..| ++|+.|...+
T Consensus 151 a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~-~V~~g~~~~l~~i~~~~ 208 (385)
T PRK09578 151 AKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGA-LVGQDQATPLTTVEQLD 208 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCC-eecCCCCcceEEEEecC
Confidence 137999999999999999999 89885 5898886543
No 86
>PRK06748 hypothetical protein; Validated
Probab=95.90 E-value=0.013 Score=47.68 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=31.0
Q ss_pred eecCCCeEEEEEeecCCCccccCCcEEEEEEc-CC
Q psy16142 128 FETPEEGYLAKILVPAGSKDVPIGKLVCIIVE-NE 161 (426)
Q Consensus 128 i~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~-~~ 161 (426)
|.||..|+|.++++++|| .|..|++|+.++. +.
T Consensus 7 v~sp~~G~I~~w~vk~GD-~V~~gd~l~~IETMdK 40 (83)
T PRK06748 7 VYSPCYGKVEKLFVRESS-YVYEWEKLALIETIDK 40 (83)
T ss_pred EecCCcEEEEEEEeCCCC-EECCCCEEEEEEcCCC
Confidence 889999999999999999 8999999999988 53
No 87
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=95.53 E-value=0.0082 Score=52.26 Aligned_cols=39 Identities=33% Similarity=0.481 Sum_probs=32.4
Q ss_pred cccCCccccCcchhhhhcccccceeecCCCeEEEEEeec
Q psy16142 104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVP 142 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~ 142 (426)
.++|+.+++|+.++.||+.|...++.||.+|+|.++.-.
T Consensus 39 p~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~ 77 (122)
T PF01597_consen 39 PKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEE 77 (122)
T ss_dssp B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GH
T ss_pred ccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccc
Confidence 578999999999999999999999999999999888533
No 88
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=95.36 E-value=0.02 Score=59.03 Aligned_cols=64 Identities=27% Similarity=0.332 Sum_probs=53.9
Q ss_pred cceeeecccccCCccccCcchhhhhccc----------------------------------------------------
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDK---------------------------------------------------- 123 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK---------------------------------------------------- 123 (426)
.|.|.+.++++||.|++||+|++|+..-
T Consensus 69 ~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~ 148 (385)
T PRK09859 69 GGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNE 148 (385)
T ss_pred cEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence 4889999999999999999999997420
Q ss_pred -------------------ccceeecCCCeEEEEEeecCCCccccCCc--EEEEEEcC
Q psy16142 124 -------------------ATMGFETPEEGYLAKILVPAGSKDVPIGK--LVCIIVEN 160 (426)
Q Consensus 124 -------------------~~~ei~a~~~G~v~~i~v~~G~~~v~vG~--~l~~i~~~ 160 (426)
-...|.||++|+|.+.++..|+ .|..|+ +|+.|...
T Consensus 149 a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~-~V~~g~~~~l~~i~~~ 205 (385)
T PRK09859 149 AEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGA-LVTANQADSLVTVQRL 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCC-eECCCCCcceEEEEec
Confidence 1147999999999999999999 899985 68887553
No 89
>PRK12784 hypothetical protein; Provisional
Probab=95.35 E-value=0.029 Score=44.58 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=57.0
Q ss_pred cceeeecccccCCccccCcchhhhhccc-ccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDK-ATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK-~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.|.+-+.++.++++|.+.+.|+.|+++- .-..|.--++|.|..+.|.+|+ .|..+.+|+.++++
T Consensus 13 ~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq-~i~~dtlL~~~edD 77 (84)
T PRK12784 13 EGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQ-QIHTDTLLVRLEDD 77 (84)
T ss_pred ccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCc-eecCCcEEEEEeec
Confidence 4788899999999999999999999974 4445888999999999999999 79999999999763
No 90
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=95.30 E-value=0.021 Score=59.15 Aligned_cols=64 Identities=25% Similarity=0.332 Sum_probs=53.1
Q ss_pred cceeeecccccCCccccCcchhhhhccc----------------------------------------------------
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDK---------------------------------------------------- 123 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK---------------------------------------------------- 123 (426)
.|.|.++++++||.|++||+|++|+...
T Consensus 73 sG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~ 152 (397)
T PRK15030 73 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ 152 (397)
T ss_pred cEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence 3899999999999999999999986421
Q ss_pred -------------------ccceeecCCCeEEEEEeecCCCccccCCcE--EEEEEcC
Q psy16142 124 -------------------ATMGFETPEEGYLAKILVPAGSKDVPIGKL--VCIIVEN 160 (426)
Q Consensus 124 -------------------~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~--l~~i~~~ 160 (426)
-...|.||++|+|.+..+++|+ .|..|++ |+.|...
T Consensus 153 a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~-~V~~g~~~~l~~i~~~ 209 (397)
T PRK15030 153 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGA-LVQNGQATALATVQQL 209 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCC-EECCCCCceEEEEEec
Confidence 0136899999999999999999 8999985 6776543
No 91
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=95.25 E-value=0.029 Score=42.17 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=29.7
Q ss_pred eecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 128 FETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 128 i~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
+.||.+|+|.++++++|+ .|+.|++|+.++..
T Consensus 2 v~a~~~G~v~~~~v~~G~-~v~~g~~l~~i~~~ 33 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGD-KVEAGQPLAVLEAM 33 (67)
T ss_pred ccCCccEEEEEEEeCCCC-EECCCCEEEEEEcc
Confidence 689999999999999999 89999999999753
No 92
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.19 E-value=0.04 Score=42.73 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=31.3
Q ss_pred eeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 127 GFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 127 ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.|.||..|+|.++++++|+ .|..|++|+.++...
T Consensus 3 ~i~a~~~G~i~~~~v~~G~-~V~~g~~l~~ve~~k 36 (70)
T PRK08225 3 KVYASMAGNVWKIVVKVGD-TVEEGQDVVILESMK 36 (70)
T ss_pred eEeCCCCEEEEEEEeCCCC-EECCCCEEEEEEcCC
Confidence 5889999999999999999 899999999998754
No 93
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=95.13 E-value=0.011 Score=51.92 Aligned_cols=38 Identities=24% Similarity=0.357 Sum_probs=35.3
Q ss_pred ccccCCccccCcchhhhhcccccceeecCCCeEEEEEe
Q psy16142 103 AKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKIL 140 (426)
Q Consensus 103 ~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~ 140 (426)
+.++|+.|++|+.++.||+-|+..+|.||.+|+|.++.
T Consensus 46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 45889999999999999999999999999999998775
No 94
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=95.09 E-value=0.026 Score=57.88 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=28.6
Q ss_pred eeecCCCeEEEEEeecCCCccccCC---cEEEEEEcCC
Q psy16142 127 GFETPEEGYLAKILVPAGSKDVPIG---KLVCIIVENE 161 (426)
Q Consensus 127 ei~a~~~G~v~~i~v~~G~~~v~vG---~~l~~i~~~~ 161 (426)
.|.||++|+|..+.+..|+ .|..| ++|+.|...+
T Consensus 185 ~I~AP~dG~V~~~~~~~G~-~V~~~~~~~~l~~i~~~~ 221 (370)
T PRK11578 185 RIVAPMAGEVTQITTLQGQ-TVIAAQQAPNILTLADMS 221 (370)
T ss_pred EEECCCCcEEEeeecCCCc-EeecccCCceEEEEecCC
Confidence 7999999999999999999 89766 4788876543
No 95
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.07 E-value=0.031 Score=49.84 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=32.8
Q ss_pred ccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 124 ATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 124 ~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
....|.||..|++.+++|++|| .|+.||+||+|+.-
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd-~V~~Gq~l~IiEAM 104 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGD-TVKAGQTLAIIEAM 104 (140)
T ss_pred cCceEecCcceEEEEEeeccCC-EEcCCCEEEEEEee
Confidence 3567999999999999999999 89999999999863
No 96
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=94.68 E-value=0.034 Score=58.16 Aligned_cols=63 Identities=25% Similarity=0.440 Sum_probs=52.6
Q ss_pred cceeeecccccCCccccCcchhhhhccc----------------------------------------------------
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDK---------------------------------------------------- 123 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK---------------------------------------------------- 123 (426)
.|.|.++++++||.|++||+|++|....
T Consensus 95 sG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~ 174 (415)
T PRK11556 95 DGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSE 174 (415)
T ss_pred cEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence 4899999999999999999999985421
Q ss_pred -------------------ccceeecCCCeEEEEEeecCCCccccCCc--EEEEEEc
Q psy16142 124 -------------------ATMGFETPEEGYLAKILVPAGSKDVPIGK--LVCIIVE 159 (426)
Q Consensus 124 -------------------~~~ei~a~~~G~v~~i~v~~G~~~v~vG~--~l~~i~~ 159 (426)
-...|.||++|+|..+.+..|+ .|..|+ +|+.|..
T Consensus 175 a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~-~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 175 TEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGN-QISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCc-eecCCCCceeEEEec
Confidence 0237999999999999999999 899984 6777754
No 97
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.42 E-value=0.064 Score=44.52 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=31.2
Q ss_pred eeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 127 GFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 127 ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
+|.||++|+|..+.+++|+ .|..|++|+.|...+
T Consensus 1 ~i~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~~ 34 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQPGE-VVSAGQPLAEIVDTD 34 (105)
T ss_pred CEECCCCEEEEEEeCCCCC-EECCCCEEEEEEccc
Confidence 4889999999999999999 899999999998753
No 98
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=94.36 E-value=0.06 Score=52.51 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=48.6
Q ss_pred eecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.+..++.||.|++||+|+.|+. .+|.||.+|+|..+ +++|- .|..|.-|+.|++-.
T Consensus 175 ~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~-~V~~G~Ki~dIDPR~ 230 (256)
T TIGR03309 175 VTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGL-TVTEGLKIGDVDPRG 230 (256)
T ss_pred EeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCC-CcCCCCEEEEECCCC
Confidence 4558999999999999999975 69999999999765 78898 799999999996643
No 99
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.03 E-value=0.094 Score=46.25 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=32.9
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.||.+|+|.++++++|+ .|..|++|+.++...
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd-~V~~Gq~L~~lEamK 96 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGD-QVTENQPLLILEAMK 96 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCC-EECCCCEEEEEeccC
Confidence 567999999999999999999 899999999998653
No 100
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=93.93 E-value=0.077 Score=53.20 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=28.5
Q ss_pred eeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 127 GFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 127 ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.|.||++|+|..+.+.+|+ .|.. ++|+.|...+
T Consensus 206 ~i~AP~dG~V~~~~~~~G~-~v~~-~~l~~i~~~~ 238 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGE-VIGS-EGILEMGDTS 238 (327)
T ss_pred EEECCCCeEEEEEecCCCC-ccCC-CccEEEecCC
Confidence 5789999999999999998 8886 8888887644
No 101
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=93.66 E-value=0.73 Score=43.77 Aligned_cols=83 Identities=20% Similarity=0.181 Sum_probs=63.3
Q ss_pred cccHHHHHHHHHHHHhhhcccccceeeCC-ceEEcCCCcEEEEeec-CCceEeecccCcCCCCHHHHHhccccccccccC
Q psy16142 319 KLSINDFIIKATALASRRVPEANSSWQDT-FIREYHSVDVSVAVNT-DKGLFTPIVFDADKKGLVDISNDSRSLISFRRP 396 (426)
Q Consensus 319 ~~s~~~~~~ka~~~al~~~p~~n~~~~~~-~i~~~~~v~i~iAv~~-~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~ 396 (426)
++++...++.++.+|+.++|+|+-++.++ .+.+|+.+|.+.+|-. +++.+.-+.-. -.-++.++.+
T Consensus 47 ~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~~~~~tFs~~~~~-y~~df~~F~~----------- 114 (206)
T PF00302_consen 47 GLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFHKDDETFSFCWTE-YDEDFEEFYA----------- 114 (206)
T ss_dssp T--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEETTTTEEEEEEE----SSHHHHHH-----------
T ss_pred CCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEeCCCCeEEEEEec-CCCCHHHHHH-----------
Confidence 68999999999999999999999999987 9999999999999975 45666544222 2348899999
Q ss_pred cCCccchHHHHHHHHHHHcC-CCCcc
Q psy16142 397 VKFSEESNDVKTLAAKAKEG-KLQPH 421 (426)
Q Consensus 397 ~~~~~~~~~~~~l~~~a~~~-~l~~~ 421 (426)
+.....+++++. .|.++
T Consensus 115 --------~~~~~~~~~~~~~~~~~~ 132 (206)
T PF00302_consen 115 --------NYEADIERYKESKGLFPK 132 (206)
T ss_dssp --------HHHHHHHHHTTS-SSSTT
T ss_pred --------HHHHHHHHHhccccccCC
Confidence 888888888764 45443
No 102
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=93.56 E-value=0.12 Score=43.56 Aligned_cols=46 Identities=26% Similarity=0.298 Sum_probs=39.1
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecC
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPA 143 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~ 143 (426)
|.-.+-++++||.|..||.|++.+. -+...|.|+.+|+|..|.-..
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~~ 84 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKRP 84 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeeeE
Confidence 4556889999999999999999975 668899999999999885443
No 103
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=93.55 E-value=0.034 Score=55.16 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=26.4
Q ss_pred eecCCCeEEE-------------------------EEeecCCCccccCCcEEEEEEcCC
Q psy16142 128 FETPEEGYLA-------------------------KILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 128 i~a~~~G~v~-------------------------~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
|.||++|+|. ++.+.+|+ .|..|++|+.|....
T Consensus 137 i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~-~v~~g~~l~~i~~~~ 194 (328)
T PF12700_consen 137 IKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQ-YVAAGQPLFTIADLS 194 (328)
T ss_dssp EE-SSSEEEE------------EES----------E-TT-TT--EETSTTCSEEEEEES
T ss_pred cccchhhhccccccccccccccccccccccccccceeccCCCC-EECCCceeeeeccCC
Confidence 9999999999 99999999 899999999997543
No 104
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=93.50 E-value=0.03 Score=40.92 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=26.5
Q ss_pred cceeeecccccCCccccCcchhhhhccccc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKAT 125 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~ 125 (426)
.|.|..|++++|+.|++||+|+++++....
T Consensus 10 ~G~V~~v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 10 SGRVESVYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred CEEEEEEEecCCCEEcCCCEEEEECcHHHH
Confidence 389999999999999999999999876543
No 105
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=93.43 E-value=0.11 Score=41.02 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=29.5
Q ss_pred eeecCCCeEEEE------EeecCCCccccCCcEEEEEEcCCc
Q psy16142 127 GFETPEEGYLAK------ILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 127 ei~a~~~G~v~~------i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
+|.+|..|.+.+ +++++|+ .|..|++|+.|+....
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~-~V~~G~~l~~iet~K~ 42 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGD-KVKKGDPLAEIETMKM 42 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTE-EESTTSEEEEEESSSE
T ss_pred EEECCCCccEEEecceeEEEECCCC-EEEcCceEEEEEcCcc
Confidence 577888776555 9999999 8999999999987654
No 106
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=92.85 E-value=0.16 Score=46.02 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=32.0
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
..|.||..|+|.++++++|| .|..|++|+.++...
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd-~V~~Gq~l~~iEamK 119 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQ-QVKVGQGLLILEAMK 119 (153)
T ss_pred CEEECCCCeEEEEEEeCCCC-EEcCCCEEEEEeecc
Confidence 56999999999999999999 899999999997643
No 107
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=92.71 E-value=0.083 Score=51.79 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=24.0
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..|.++..|+|.+|+|++|+ .|+.|++|+.|++.
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~-~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQ-RVKKGQVLARLDPT 35 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTE-EE-TTSECEEE--H
T ss_pred EEEeCCCCeEEEEEEccCcC-EEeCCCEEEEEEee
Confidence 46889999999999999999 89999999999854
No 108
>PRK07051 hypothetical protein; Validated
Probab=92.37 E-value=0.19 Score=40.20 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=33.0
Q ss_pred ccceeecCCCeEEEE-------EeecCCCccccCCcEEEEEEcCC
Q psy16142 124 ATMGFETPEEGYLAK-------ILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 124 ~~~ei~a~~~G~v~~-------i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
+..++.||..|++.. +++++|+ .|..|++|+.++...
T Consensus 2 ~~~~~~ap~~g~~~~~~~~~~~~~v~~Gd-~V~~g~~l~~ve~~k 45 (80)
T PRK07051 2 AQHEIVSPLPGTFYRRPSPDAPPYVEVGD-AVAAGDVVGLIEVMK 45 (80)
T ss_pred CccEEeCCCceEEEecCCCCCCCccCCCC-EECCCCEEEEEEEcc
Confidence 356799999999999 9999999 899999999998753
No 109
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=92.10 E-value=0.18 Score=51.84 Aligned_cols=57 Identities=26% Similarity=0.394 Sum_probs=39.2
Q ss_pred eeeecccccCCccccCcchhhhh----cccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 98 TIVSWAKKEGDKLNEGDLLAEIE----TDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 98 ~i~~w~v~vGd~Ve~gd~L~~ve----tdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
=+..+.++.||.|++||.|++|= .+....+|.||.+|+| +.....- .|..|+.|+.|
T Consensus 298 Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv--~~~~~~~-~V~~G~~l~~I 358 (359)
T cd06250 298 GMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLL--FARASRR-FVRAGDELAKI 358 (359)
T ss_pred eEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEE--EEecCCc-cccCCCeEEEe
Confidence 34567788888888888888762 1233444688888888 4445555 67888888765
No 110
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=91.95 E-value=0.16 Score=50.97 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=32.5
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.+.|.|+.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~-~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTD-YVKQGDVLVRLDPT 76 (334)
T ss_pred eEEEcccCceEEEEEEeCCCC-EEcCCCEEEEECch
Confidence 678999999999999999999 89999999999754
No 111
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=91.70 E-value=0.22 Score=49.80 Aligned_cols=56 Identities=30% Similarity=0.322 Sum_probs=33.9
Q ss_pred eeecccccCCccccCcchhhhhc---ccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 99 IVSWAKKEGDKLNEGDLLAEIET---DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 99 i~~w~v~vGd~Ve~gd~L~~vet---dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
+..+.++.||.|++||.|.+|=. +....++.||.+|+|.. ....- .|..|+.|+.|
T Consensus 239 l~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~--~~~~p-~v~~G~~l~~i 297 (298)
T cd06253 239 IFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFT--LREYP-LVYEGSLVARI 297 (298)
T ss_pred EEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEE--eecCC-eecCCceEEEe
Confidence 34555677777777777776622 33455677777777733 33444 56677776654
No 112
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=90.44 E-value=0.3 Score=49.58 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=34.8
Q ss_pred hhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 118 EIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 118 ~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.|+++ .+.|.++.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus 43 ~v~~~--~v~v~~~v~G~V~~v~V~~G~-~VkkGq~L~~ld~~ 82 (346)
T PRK10476 43 YIDAD--VVHVASEVGGRIVELAVTENQ-AVKKGDLLFRIDPR 82 (346)
T ss_pred EEEee--eEEEcccCceEEEEEEeCCCC-EEcCCCEEEEECcH
Confidence 34554 678999999999999999999 89999999999754
No 113
>COG3608 Predicted deacylase [General function prediction only]
Probab=90.44 E-value=0.35 Score=48.99 Aligned_cols=61 Identities=25% Similarity=0.369 Sum_probs=48.5
Q ss_pred cceeeecccccCCccccCcchhhhhc---ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIET---DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vet---dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
.+=+++++++.||.|++||.|+.|-. -+...||.|+.+|+|...... + .|+.|+.++.+..
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~-~--~v~~Gdl~~~v~~ 326 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSL-R--LVQPGDLLKVVGR 326 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeec-c--ccCCCCeeeeecc
Confidence 34567999999999999999998744 488999999999999776433 3 4788877777654
No 114
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=90.29 E-value=0.28 Score=49.12 Aligned_cols=41 Identities=20% Similarity=0.427 Sum_probs=34.2
Q ss_pred hhcccccceeecCCC---eEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 119 IETDKATMGFETPEE---GYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 119 vetdK~~~ei~a~~~---G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
|+...-...|.++.+ |+|.+|+|++|+ .|+.|++|+.|+..
T Consensus 7 v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~-~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 7 LEPEGEVVAVAAPSSGGTDRIKKLLVAEGD-RVQAGQVLAELDSR 50 (327)
T ss_pred EeecCceEEecCCCCCCCcEEEEEEccCCC-EecCCcEEEEecCc
Confidence 333333457889999 999999999999 89999999999765
No 115
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=90.22 E-value=1.4 Score=41.62 Aligned_cols=76 Identities=13% Similarity=0.109 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCC-ceEeecccCcCCCCHH
Q psy16142 303 IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDK-GLFTPIVFDADKKGLV 381 (426)
Q Consensus 303 ~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~-GL~~pvi~~a~~~~l~ 381 (426)
..+|..+++ .+++++.+++.|+.+++.+|++|+-+++++...+++.++..+.|-.++ +++.-+--+ -+.+..
T Consensus 40 tn~~~~vk~------~~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~~~e~Fs~l~~e-~~~~~~ 112 (219)
T COG4845 40 TNFYGYVKE------NGLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHGETETFSVLWTE-YQEDYE 112 (219)
T ss_pred hHHHHHHHH------cCCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcCCCcEEEEEecc-ccccHH
Confidence 445555543 278999999999999999999999999999999999999999999855 566644333 556777
Q ss_pred HHHh
Q psy16142 382 DISN 385 (426)
Q Consensus 382 ~i~~ 385 (426)
++.+
T Consensus 113 dF~q 116 (219)
T COG4845 113 DFAQ 116 (219)
T ss_pred HHHH
Confidence 7777
No 116
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=90.17 E-value=0.41 Score=47.53 Aligned_cols=55 Identities=25% Similarity=0.279 Sum_probs=31.4
Q ss_pred eecccccCCccccCcchhhhhcc--cccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 100 VSWAKKEGDKLNEGDLLAEIETD--KATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 100 ~~w~v~vGd~Ve~gd~L~~vetd--K~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
..+.++.||.|++||+|+.|-.- ....+|.||.+|+|..+ ...- .|..|+.|+.|
T Consensus 230 ~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~--~~~~-~v~~G~~l~~i 286 (287)
T cd06251 230 LRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGR--NNLP-LVNEGDALFHI 286 (287)
T ss_pred EEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEe--cCCC-ccCCCCEEEEe
Confidence 34566677777777777666221 22356777777777333 2333 46666666654
No 117
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=90.13 E-value=0.39 Score=48.78 Aligned_cols=55 Identities=18% Similarity=0.387 Sum_probs=39.7
Q ss_pred eecccccCCccccCcchhhhhc----ccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 100 VSWAKKEGDKLNEGDLLAEIET----DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 100 ~~w~v~vGd~Ve~gd~L~~vet----dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
..+.++.||.|++||.|.+|=. .....+|.||.+|+|.. ....- .|..|+.|+.|
T Consensus 266 ~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~--~~~~~-~V~~Gd~l~~i 324 (325)
T TIGR02994 266 IEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAA--RHFPG-LIKSGDCIAVL 324 (325)
T ss_pred EEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEE--EeCCC-ccCCCCEEEEe
Confidence 4677888888888888887732 23456788888888854 34444 68888888765
No 118
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=89.93 E-value=0.48 Score=47.79 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=42.1
Q ss_pred eeeecccccCCccccCcchhhhhc----ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 98 TIVSWAKKEGDKLNEGDLLAEIET----DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 98 ~i~~w~v~vGd~Ve~gd~L~~vet----dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
=+..+.++.||.|++||+|.+|-. .....+|.||.+|+|.-. ...- .|..|+.|+.|.
T Consensus 253 G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~--~~~~-~v~~G~~l~~i~ 314 (316)
T cd06252 253 GLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAAR--RPPG-LVRRGDCLAVLA 314 (316)
T ss_pred eEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEe--eCCC-ccCCCCEEEEEe
Confidence 345677889999999999998732 234567999999998543 3343 588888888774
No 119
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=89.70 E-value=0.34 Score=47.85 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=32.0
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
+..|.+|.+|+|.++++++|+ .|+.|++|+.+...
T Consensus 26 ~~~v~a~~~G~V~~i~v~~G~-~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 26 EADLAAEVAGKITKISVREGQ-KVKKGQVLARLDDD 60 (322)
T ss_pred EEEEEccccEEEEEEEcCCCC-EEcCCCEEEEECCH
Confidence 467999999999999999999 89999999999754
No 120
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=89.18 E-value=0.37 Score=48.39 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=32.0
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
+.|.++.+|.|.++++++|+ .|+.|++|+.|+..+
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd-~VkkGqvLa~Ld~~~ 82 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQ-LVKKGQVLFTIDQPR 82 (310)
T ss_pred EEEccCCceEEEEEEeCCcC-EEcCCCEEEEECcHH
Confidence 56999999999999999999 899999999997643
No 121
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=89.16 E-value=0.37 Score=49.98 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=32.7
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.+.|.++.+|+|.+++|++|+ .|+.|++|+.|+..
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd-~VkkGqvL~~LD~~ 95 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTD-FVKEGDVLVTLDPT 95 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCC-EECCCCEEEEECcH
Confidence 778999999999999999999 89999999999764
No 122
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=88.44 E-value=0.49 Score=47.62 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=32.3
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.+.|.++..|+|.++++++|+ .|+.|++|+.|+..
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd-~V~kG~~L~~ld~~ 77 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGD-AVKAGQVLGELDAA 77 (331)
T ss_pred EEEeecccCcEEEEEEcCCCC-EEcCCCEEEEEChH
Confidence 668999999999999999999 89999999999653
No 123
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=87.62 E-value=3.6 Score=39.48 Aligned_cols=83 Identities=16% Similarity=0.067 Sum_probs=63.1
Q ss_pred CcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEeecCC-ceEeecccCcCCCCHHHHHhccccccccccC
Q psy16142 318 AKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDK-GLFTPIVFDADKKGLVDISNDSRSLISFRRP 396 (426)
Q Consensus 318 ~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv~~~~-GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~ 396 (426)
.++++...++.|+.+|+-++|+|+-++.++.+..|+.+|.+.+|-.++ +.+.-+-- .-.-++.++.+
T Consensus 51 ~~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~~~~~tFs~~~~-~y~~df~~F~~----------- 118 (219)
T PRK13757 51 NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWS-EYHDDFRQFLH----------- 118 (219)
T ss_pred cCCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEeCCCceEEEEEe-cCcCCHHHHHH-----------
Confidence 367888999999999999999999999999999999999999999555 45554321 12345666766
Q ss_pred cCCccchHHHHHHHHHHHcC-CCCc
Q psy16142 397 VKFSEESNDVKTLAAKAKEG-KLQP 420 (426)
Q Consensus 397 ~~~~~~~~~~~~l~~~a~~~-~l~~ 420 (426)
......+++++. .|-+
T Consensus 119 --------~~~~~~~~~~~~~~~~~ 135 (219)
T PRK13757 119 --------IYSQDVACYGENLAYFP 135 (219)
T ss_pred --------HHHHHHHHHhcCccccC
Confidence 666667777765 3433
No 124
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=87.33 E-value=0.81 Score=44.05 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=31.8
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.+.|.||++|+|..+.+.+|+ .|..|++|+.|.+..
T Consensus 88 ~~~i~AP~dG~V~~~~~~~G~-~v~~g~~l~~i~~~~ 123 (265)
T TIGR00999 88 YVEVRSPFDGYITQKSVTLGD-YVAPQAELFRVADLG 123 (265)
T ss_pred eEEEECCCCeEEEEEEcCCCC-EeCCCCceEEEEcCC
Confidence 346899999999999999999 899999999987643
No 125
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.30 E-value=0.57 Score=48.18 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=36.4
Q ss_pred hhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 118 EIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 118 ~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.|........|.++.+|+|.+++|++|+ .|+.|++|+.++...
T Consensus 36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~-~V~kG~~L~~ld~~~ 78 (423)
T TIGR01843 36 KVVPSGNVKVVQHLEGGIVREILVREGD-RVKAGQVLVELDATD 78 (423)
T ss_pred EEEECCCeeecccCCCcEEEEEEeCCCC-EecCCCeEEEEccch
Confidence 3445666667899999999999999999 899999999997643
No 126
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=87.01 E-value=0.67 Score=48.37 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=32.6
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.++.+|+|.+++|++|+ .|+.|++|+.|+...
T Consensus 58 ~~~v~a~~~G~V~~i~V~eG~-~V~kGq~L~~l~~~~ 93 (421)
T TIGR03794 58 VDTIQSPGSGVVIDLDVEVGD-QVKKGQVVARLFQPE 93 (421)
T ss_pred eeEEECCCCeEEEEEECCCcC-EECCCCEEEEECcHH
Confidence 458999999999999999999 899999999997643
No 127
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.99 E-value=0.61 Score=49.31 Aligned_cols=36 Identities=8% Similarity=0.123 Sum_probs=32.3
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.++..|+|.+|+|++|+ .|+.|++|+.|....
T Consensus 59 ~~~vq~~~~G~v~~i~V~eG~-~V~~G~~L~~ld~~~ 94 (457)
T TIGR01000 59 LSKIQSTSNNAIKENYLKENK-FVKKGDLLVVYDNGN 94 (457)
T ss_pred eEEEEcCCCcEEEEEEcCCCC-EecCCCEEEEECchH
Confidence 457999999999999999999 899999999997643
No 128
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=86.78 E-value=0.64 Score=45.99 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=25.1
Q ss_pred ccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 124 ATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 124 ~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
-+..|.++.+|+| ++++++|+ .|+.|++|+.|...
T Consensus 20 ~~~~v~~~~~G~v-~~~v~~G~-~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 20 NEVSVSAPVSGRV-SVNVKEGD-KVKKGQVLAELDSS 54 (328)
T ss_dssp SEEEE--SS-EEE-EE-S-TTS-EEETT-EEEEEE-H
T ss_pred EEEEEECCCCEEE-EEEeCCcC-EECCCCEEEEEECh
Confidence 3567999999999 99999999 89999999999854
No 129
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=86.68 E-value=0.73 Score=47.18 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=34.3
Q ss_pred hhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 118 EIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 118 ~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
.|+... ...|.|+.+|.|.++++++|+ .|+.|++|+.|+.
T Consensus 55 ~v~~~~-~~~l~a~~~G~V~~v~v~~G~-~V~kG~~L~~ld~ 94 (370)
T PRK11578 55 KLDALR-KVDVGAQVSGQLKTLSVAIGD-KVKKDQLLGVIDP 94 (370)
T ss_pred EEEeee-EEEEecccceEEEEEEcCCCC-EEcCCCEEEEECc
Confidence 344444 568999999999999999999 8999999999965
No 130
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=86.17 E-value=0.97 Score=41.03 Aligned_cols=35 Identities=26% Similarity=0.450 Sum_probs=31.0
Q ss_pred ceeecCCCeEEEE-------EeecCCCccccCCcEEEEEEcCC
Q psy16142 126 MGFETPEEGYLAK-------ILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 126 ~ei~a~~~G~v~~-------i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
..|.||..|++.. +++++|+ .|..|++||.++...
T Consensus 81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd-~V~~Gq~l~iiEamK 122 (156)
T TIGR00531 81 HFVRSPMVGTFYRAPSPDAKPFVEVGD-KVKKGQIVCIVEAMK 122 (156)
T ss_pred CEEeCCCCEEEEecCCCCCCccccCCC-EeCCCCEEEEEEecc
Confidence 5699999999976 5899999 899999999998653
No 131
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=86.15 E-value=0.85 Score=47.03 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=36.9
Q ss_pred chhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 115 LLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 115 ~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
....|+... ..+|.++.+|+|.++.+++|+ .|+.|++|+.|+..
T Consensus 52 ~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~-~VkkGqvLa~ld~~ 95 (385)
T PRK09859 52 LPGRTVPYE-VAEIRPQVGGIIIKRNFIEGD-KVNQGDSLYQIDPA 95 (385)
T ss_pred EEEEEEEEE-EEEEeccCcEEEEEEEcCCcC-EecCCCEEEEECcH
Confidence 344555554 677999999999999999999 89999999999754
No 132
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=86.04 E-value=0.97 Score=44.41 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=32.1
Q ss_pred cceeecCCCeEEEE-------EeecCCCccccCCcEEEEEEcCCc
Q psy16142 125 TMGFETPEEGYLAK-------ILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 125 ~~ei~a~~~G~v~~-------i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
...|.||..|++.+ +++++|| .|+.|++|+.|+...-
T Consensus 197 ~~~V~APmaGtf~r~p~pge~w~VkvGD-sVkkGQvLavIEAMKm 240 (274)
T PLN02983 197 HPPLKSPMAGTFYRSPAPGEPPFVKVGD-KVQKGQVVCIIEAMKL 240 (274)
T ss_pred CCeEeCCcCeEEEeccCCCCcceeCCCC-EecCCCEEEEEEeece
Confidence 34589999999999 5999999 8999999999987543
No 133
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=86.00 E-value=0.86 Score=47.68 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=37.2
Q ss_pred chhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 115 LLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 115 ~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
....|+.. -.+.|.++.+|+|.++++++|+ .|+.|++|+.|...
T Consensus 78 ~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~-~VkkGq~La~ld~~ 121 (415)
T PRK11556 78 GLGTVTAA-NTVTVRSRVDGQLMALHFQEGQ-QVKAGDLLAEIDPR 121 (415)
T ss_pred EEEEEEee-eEEEEEccccEEEEEEECCCCC-EecCCCEEEEECcH
Confidence 34556664 3678999999999999999999 89999999999764
No 134
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=85.94 E-value=0.85 Score=47.30 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=35.5
Q ss_pred hhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 118 EIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 118 ~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.|+... ..+|.++.+|+|.++.+++|+ .|+.|++|+.|+..
T Consensus 59 ~v~a~~-~~~l~a~vsG~V~~v~v~~Gd-~VkkGqvLa~ld~~ 99 (397)
T PRK15030 59 RTSAYR-IAEVRPQVSGIILKRNFKEGS-DIEAGVSLYQIDPA 99 (397)
T ss_pred EEEEEE-EEEEEecCcEEEEEEEcCCCC-EecCCCEEEEECCH
Confidence 455544 778999999999999999999 89999999999754
No 135
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=85.85 E-value=1 Score=49.44 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=32.3
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.+|.||..|+|.++++++|+ .|+.|++|+.++...
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd-~V~~Gq~L~~iEamK 560 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGD-EVKAGQAVLVIEAMK 560 (596)
T ss_pred CeEecCcceEEEEEEeCCCC-EeCCCCEEEEEEecc
Confidence 36999999999999999999 899999999998754
No 136
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=85.73 E-value=0.75 Score=47.38 Aligned_cols=42 Identities=12% Similarity=0.189 Sum_probs=35.7
Q ss_pred hhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 117 AEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 117 ~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..|+.+. ..+|.++.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus 56 G~v~~~~-~~~l~~~v~G~V~~v~v~~Gd-~VkkGq~La~ld~~ 97 (385)
T PRK09578 56 GRLDAYR-QAEVRARVAGIVTARTYEEGQ-EVKQGAVLFRIDPA 97 (385)
T ss_pred EEEEEee-EEEEeccCcEEEEEEECCCCC-EEcCCCEEEEECCH
Confidence 3455544 668999999999999999999 89999999999654
No 137
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=85.71 E-value=0.69 Score=45.95 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=21.3
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
..-+.||..|.+ ...++.|+ .|+.|++|+++
T Consensus 223 ~~~v~Ap~~G~~-~~~~~~G~-~V~~G~~lg~i 253 (288)
T cd06254 223 VYYVTSPASGLW-YPFVKAGD-TVQKGALLGYV 253 (288)
T ss_pred CEEEecCCCeEE-EEecCCCC-EecCCCEEEEE
Confidence 445677777777 56667777 67777777777
No 138
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=85.21 E-value=1.5 Score=51.74 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=44.0
Q ss_pred eeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 98 TIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 98 ~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
......++.++.+..++.....+.. -...|.||..|+|.++++++|+ .|+.|++|++++...
T Consensus 1048 q~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd-~V~~Gd~L~~iEamK 1109 (1143)
T TIGR01235 1048 QPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQ-AVNKGDPLVVLEAMK 1109 (1143)
T ss_pred eEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCC-EeCCCCEEEEEEecc
Confidence 3344445555555544444333222 2456999999999999999999 799999999998754
No 139
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=84.62 E-value=0.83 Score=44.78 Aligned_cols=41 Identities=29% Similarity=0.399 Sum_probs=34.5
Q ss_pred eecccccCCccccCcchhhhhcccc--cceeecCCCeEEEEEeecC
Q psy16142 100 VSWAKKEGDKLNEGDLLAEIETDKA--TMGFETPEEGYLAKILVPA 143 (426)
Q Consensus 100 ~~w~v~vGd~Ve~gd~L~~vetdK~--~~ei~a~~~G~v~~i~v~~ 143 (426)
-+.++++||.|+.||+|+ .||- .+-+.||.+|+|.+|...+
T Consensus 41 Pkm~VkeGD~Vk~Gq~LF---~dK~~p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 41 PKMLVKEGDRVKAGQPLF---EDKKNPGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred ccEEeccCCEEeCCCeeE---eeCCCCCcEEecCCCeEEEEEecCC
Confidence 588899999999999999 4655 4568999999999988633
No 140
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=83.44 E-value=1.5 Score=48.01 Aligned_cols=37 Identities=22% Similarity=0.344 Sum_probs=33.2
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
...|.||..|+|.++++++|+ .|+.|++|+.++...-
T Consensus 517 ~~~v~ap~~G~v~~~~V~~Gd-~V~~G~~l~~iEamKm 553 (582)
T TIGR01108 517 GTPVTAPIAGSIVKVKVSEGQ-TVAEGEVLLILEAMKM 553 (582)
T ss_pred CCeEeCCccEEEEEEEeCCCC-EECCCCEEEEEEeccc
Confidence 347999999999999999999 7999999999987543
No 141
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=83.43 E-value=1.5 Score=39.65 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=31.1
Q ss_pred ceeecCCCeEEEE-------EeecCCCccccCCcEEEEEEcCC
Q psy16142 126 MGFETPEEGYLAK-------ILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 126 ~ei~a~~~G~v~~-------i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
..|.||.-|++.. .+++.|+ .|..|++||.++...
T Consensus 80 ~~v~sp~~G~~~~~~sP~~~~~v~~Gd-~V~~Gq~l~~iEamK 121 (155)
T PRK06302 80 HVVTSPMVGTFYRAPSPDAPPFVEVGD-TVKEGQTLCIIEAMK 121 (155)
T ss_pred CEEeCCcCEEEEecCCCCCCcccCCCC-EeCCCCEEEEEEecc
Confidence 5799999999976 6899999 899999999998753
No 142
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=83.38 E-value=1.3 Score=46.24 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=35.8
Q ss_pred hhhhhcc-cccceeecCCCeEEEEEe-ecCCCccccCCcEEEEEEcC
Q psy16142 116 LAEIETD-KATMGFETPEEGYLAKIL-VPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 116 L~~vetd-K~~~ei~a~~~G~v~~i~-v~~G~~~v~vG~~l~~i~~~ 160 (426)
...|+.| .-...|.++.+|.|.+++ +.+|+ .|+.|++|+.|...
T Consensus 113 ~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd-~VkkGq~La~l~sp 158 (409)
T PRK09783 113 PANVSYNEYQYAIVQARAAGFIDKVYPLTVGD-KVQKGTPLLDLTIP 158 (409)
T ss_pred eEEEEECCCceEEEeCCcCEEEEEEEecCCCC-EECCCCEEEEEeCH
Confidence 3445543 235679999999999998 99999 89999999999754
No 143
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=81.82 E-value=1.6 Score=47.03 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=31.2
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
-.+.||..|+|..+.|++|+ .|..|++|++++.-
T Consensus 576 ~~l~aPMpG~v~~v~V~~G~-~V~~G~~lvvlEAM 609 (645)
T COG4770 576 GELLAPMPGTVVSVAVKEGQ-EVSAGDLLVVLEAM 609 (645)
T ss_pred CceecCCCceEEEEEecCCC-EecCCCeEEEeEeh
Confidence 35999999999999999999 89999999999864
No 144
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=81.77 E-value=1.9 Score=47.38 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=32.6
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.||..|+|.++++++|+ .|..|++|+.++...
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd-~V~~Gd~l~~iEamK 559 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQ-TVAEGDVLLILEAMK 559 (593)
T ss_pred CceEECCccEEEEEEEeCCCC-EeCCCCEEEEEecCc
Confidence 457999999999999999999 899999999997654
No 145
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=80.84 E-value=2 Score=44.88 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=30.7
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
..|.||++|+|..+.+.+|+ .|..|++|+.|..
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~-~v~~g~~l~~i~~ 286 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQ-LVAAGAPLASLEV 286 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCC-EecCCCcEEEEEc
Confidence 57999999999999999999 8999999999954
No 146
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=80.51 E-value=2.1 Score=43.94 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=31.5
Q ss_pred ccceeecCCCeEEEEEee-cCCCccccCCcEEEEEEcC
Q psy16142 124 ATMGFETPEEGYLAKILV-PAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 124 ~~~ei~a~~~G~v~~i~v-~~G~~~v~vG~~l~~i~~~ 160 (426)
-...|.||++|+|..+.+ ..|+ .|..|++|+.|.+.
T Consensus 270 ~~~~i~AP~dG~V~~~~~~~~G~-~v~~g~~l~~i~~~ 306 (423)
T TIGR01843 270 QRLIIRSPVDGTVQSLKVHTVGG-VVQPGETLMEIVPE 306 (423)
T ss_pred hhcEEECCCCcEEEEEEEEccCc-eecCCCeeEEEecC
Confidence 456799999999999876 7999 89999999999764
No 147
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=80.40 E-value=1.8 Score=44.43 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=32.8
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
...|.||.+|+|.+..++.|+ .|.+|++|+.+.+.+.
T Consensus 208 ~T~IrAP~dG~V~~~~v~~G~-~V~~G~~l~alVp~~~ 244 (352)
T COG1566 208 RTVIRAPVDGYVTNLSVRVGQ-YVSAGTPLMALVPLDS 244 (352)
T ss_pred CCEEECCCCceEEeecccCCC-eecCCCceEEEecccc
Confidence 456999999999999999999 8999999999977543
No 148
>KOG3373|consensus
Probab=79.73 E-value=1 Score=40.98 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=37.5
Q ss_pred cccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCC
Q psy16142 104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS 145 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~ 145 (426)
=++|-.|.+||.++.+|+=|+.-+|.+|.+|.|.+|.-+-.+
T Consensus 88 Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~E 129 (172)
T KOG3373|consen 88 PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEE 129 (172)
T ss_pred CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccccc
Confidence 357889999999999999999999999999999999766554
No 149
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=79.66 E-value=2.4 Score=46.60 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=32.7
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.||.+|+|.++.+++|+ .|+.|++|+.++...
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd-~V~~Gq~L~~ieamK 557 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGD-KVKAGDTVLVLEAMK 557 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCC-EECCCCEEEEEeccc
Confidence 467999999999999999999 899999999997643
No 150
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=78.78 E-value=2.6 Score=38.81 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.3
Q ss_pred EEeecCCCccccCCcEEEEEEc
Q psy16142 138 KILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 138 ~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
+.++++|+ .|+.|++|+++.-
T Consensus 105 ~~~Vk~Gd-~Vk~G~~L~~~D~ 125 (169)
T PRK09439 105 KRIAEEGQ-RVKVGDPIIEFDL 125 (169)
T ss_pred EEEecCCC-EEeCCCEEEEEcH
Confidence 45899999 7999999999964
No 151
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=78.65 E-value=3.3 Score=36.21 Aligned_cols=21 Identities=19% Similarity=0.075 Sum_probs=18.3
Q ss_pred EEeecCCCccccCCcEEEEEEc
Q psy16142 138 KILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 138 ~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
++++++|+ .|..|++|+.+.-
T Consensus 83 ~~~vk~Gd-~V~~G~~l~~~D~ 103 (124)
T cd00210 83 TSHVEEGQ-RVKQGDKLLEFDL 103 (124)
T ss_pred EEEecCCC-EEcCCCEEEEEcH
Confidence 56899999 7999999999963
No 152
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=78.23 E-value=3.4 Score=36.01 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=18.6
Q ss_pred EEeecCCCccccCCcEEEEEEc
Q psy16142 138 KILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 138 ~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
+.++++|+ .|+.|++|+++.-
T Consensus 83 ~~~v~~Gd-~V~~G~~l~~~D~ 103 (121)
T TIGR00830 83 TSHVEEGQ-RVKKGDPLLEFDL 103 (121)
T ss_pred EEEecCCC-EEcCCCEEEEEcH
Confidence 56899999 7999999999963
No 153
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=77.50 E-value=2.7 Score=43.19 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=32.0
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.+.|.+..+|+|.++.++.++ .|+.|++|++|++..
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq-~Vk~Gd~L~~iD~~~ 88 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQ-LVKKGDVLFRIDPRD 88 (352)
T ss_pred EEEEcCcCceEEEEEEecCCC-EecCCCeEEEECcHH
Confidence 456889999999999999999 799999999997643
No 154
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=77.45 E-value=1.9 Score=45.76 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=36.9
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEee
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 141 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v 141 (426)
|.-.+.+|++||.|..||+|++-... ..+-+.||.+|+|++|..
T Consensus 38 G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 38 GMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 44467899999999999999976543 578899999999999954
No 155
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=77.04 E-value=3.1 Score=49.48 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=32.8
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
...|.||..|+|.++++++|| .|+.|++|+.++...-
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd-~V~~Gd~l~~iEsmK~ 1168 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGD-RVEAGQPLVILEAMKM 1168 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCC-EECCCCEEEEEEecCe
Confidence 345999999999999999999 8999999999987543
No 156
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=76.79 E-value=1.2 Score=35.43 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=17.9
Q ss_pred ccceeeecccccCCccccCcchhhhhc
Q psy16142 95 EMGTIVSWAKKEGDKLNEGDLLAEIET 121 (426)
Q Consensus 95 d~g~i~~w~v~vGd~Ve~gd~L~~vet 121 (426)
|.+....++++.||.|++||+|++|=+
T Consensus 29 D~~vGi~l~~k~Gd~V~~Gd~l~~i~~ 55 (75)
T PF07831_consen 29 DPAVGIELHKKVGDRVEKGDPLATIYA 55 (75)
T ss_dssp -TT-EEEESS-TTSEEBTTSEEEEEEE
T ss_pred CcCcCeEecCcCcCEECCCCeEEEEEc
Confidence 345666788888888888888887644
No 157
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=76.67 E-value=2.1 Score=38.64 Aligned_cols=45 Identities=31% Similarity=0.450 Sum_probs=33.2
Q ss_pred cceeeecccccCCccccCcchhhhhcccccce-eecCCCeEEEEEe
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMG-FETPEEGYLAKIL 140 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~e-i~a~~~G~v~~i~ 140 (426)
+|..+-..+.+|+.|.+||.|+-+.|-|-++- +.||++|+|.-+.
T Consensus 88 eG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 88 EGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp ESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred cceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 45667788999999999999999999998765 9999999996554
No 158
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=76.41 E-value=3.4 Score=37.58 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=19.9
Q ss_pred eEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 134 GYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 134 G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
|.-=+.++++|+ .|++||+|+++.-
T Consensus 86 GegF~~~v~~Gd-~Vk~Gd~Li~fDl 110 (156)
T COG2190 86 GEGFESLVKEGD-KVKAGDPLLEFDL 110 (156)
T ss_pred CcceEEEeeCCC-EEccCCEEEEECH
Confidence 333355999999 7999999999964
No 159
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=76.34 E-value=3.2 Score=36.73 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=15.6
Q ss_pred EEeecCCCccccCCcEEEEEEc
Q psy16142 138 KILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 138 ~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
+.++++|+ .|+.|++|+.+.-
T Consensus 87 ~~~v~~G~-~V~~G~~L~~~D~ 107 (132)
T PF00358_consen 87 ETLVKEGD-KVKAGQPLIEFDL 107 (132)
T ss_dssp EESS-TTS-EE-TTEEEEEE-H
T ss_pred EEEEeCCC-EEECCCEEEEEcH
Confidence 34899999 7999999999964
No 160
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=75.04 E-value=2.1 Score=45.43 Aligned_cols=44 Identities=30% Similarity=0.414 Sum_probs=36.4
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEee
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 141 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v 141 (426)
|.-.+.+|++||.|..||.|++-... .+..+.||.+|+|+.|..
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 44457899999999999999965543 468899999999999953
No 161
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=74.30 E-value=3.5 Score=41.23 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=26.5
Q ss_pred CCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 132 EEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.+|+|.++++++|| .|+.|++|+.++...
T Consensus 15 ~~g~~~~~~~~~g~-~v~~~~~~~~~e~~k 43 (371)
T PRK14875 15 TEGKVAGWLVQEGD-EVEKGDELLDVETDK 43 (371)
T ss_pred ceEEEEEEEcCCCC-EeCCCCEEEEEEecc
Confidence 58999999999999 899999999998654
No 162
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=74.23 E-value=5.3 Score=30.66 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=25.8
Q ss_pred CCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 132 EEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.+|++.++++++|+ .|..|++|+.++...
T Consensus 12 ~~g~~~~~~v~~G~-~v~~g~~l~~ie~~k 40 (73)
T cd06663 12 GDGTVVKWLKKVGD-KVKKGDVLAEIEAMK 40 (73)
T ss_pred cCEEEEEEEcCCcC-EECCCCEEEEEEeCC
Confidence 47999999999999 899999999997654
No 163
>PRK12784 hypothetical protein; Provisional
Probab=73.73 E-value=4.2 Score=32.59 Aligned_cols=39 Identities=26% Similarity=0.242 Sum_probs=33.1
Q ss_pred cccc-eeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 123 KATM-GFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 123 K~~~-ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
|+.+ +|.||+-|+|.++++.+++ .|--=++|+.|...+.
T Consensus 2 k~~ie~iyS~~~G~Vekifi~esS-yVYEWEkL~~I~~~dg 41 (84)
T PRK12784 2 KTRMEEICSSYEGKVEEIFVNESS-YVYEWEKLMMIRKNNG 41 (84)
T ss_pred ceehhhhcCccccEEEEEEEcCCc-eEEeeeeeeEEeecCC
Confidence 4433 4899999999999999999 8999999999986543
No 164
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=73.50 E-value=2.7 Score=44.40 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=35.6
Q ss_pred eeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEe
Q psy16142 98 TIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKIL 140 (426)
Q Consensus 98 ~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~ 140 (426)
.-.+.+|++||.|..||.|++-+ ......+.||.+|+|++|.
T Consensus 41 ~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 41 APAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 33578999999999999999884 3358899999999998885
No 165
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=72.79 E-value=5.5 Score=39.12 Aligned_cols=58 Identities=24% Similarity=0.400 Sum_probs=45.6
Q ss_pred eeeecccccCCccccCcch--hhhh-cc-cccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 98 TIVSWAKKEGDKLNEGDLL--AEIE-TD-KATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 98 ~i~~w~v~vGd~Ve~gd~L--~~ve-td-K~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
-+..+.++.|+.|++||+| ..+- .. -...++.||.+|+| +.....- .|..|+.|+.+.
T Consensus 229 G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~i--i~~~~~~-~v~~G~~l~~v~ 290 (292)
T PF04952_consen 229 GLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGII--IFIRESP-YVEQGDALAKVA 290 (292)
T ss_dssp EEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEE--ESECTSS-ECTTTEEEEEEE
T ss_pred EEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEE--EEeCccc-ccCCCCeEEEEe
Confidence 3458899999999999999 4331 11 22457999999999 7777887 799999999875
No 166
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=72.52 E-value=4.1 Score=39.95 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=31.5
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..++.++..|.|.++++++|+ .|+.|++|+.++..
T Consensus 66 ~~~v~~~~~G~v~~i~v~~G~-~Vk~Gq~L~~ld~~ 100 (372)
T COG0845 66 SVEVLARVAGIVAEILVKEGD-RVKKGQLLARLDPS 100 (372)
T ss_pred eeeEecccccEEEEEEccCCC-eecCCCEEEEECCc
Confidence 347888899999999999999 89999999999873
No 167
>PRK12999 pyruvate carboxylase; Reviewed
Probab=71.08 E-value=4.8 Score=47.63 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=32.6
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.||..|+|.++++++|+ .|+.|++|+.++...
T Consensus 1076 ~~~v~apm~G~v~~i~v~~Gd-~V~~G~~L~~leamK 1111 (1146)
T PRK12999 1076 PGHVGAPMPGSVVTVLVKEGD-EVKAGDPLAVIEAMK 1111 (1146)
T ss_pred CceEeCCceEEEEEEEcCCCC-EECCCCEEEEEEccc
Confidence 456999999999999999999 899999999998653
No 168
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=70.45 E-value=4.7 Score=45.12 Aligned_cols=43 Identities=21% Similarity=0.345 Sum_probs=35.5
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEe
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKIL 140 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~ 140 (426)
|.-.+.+|++||.|..||+|++-.. -....|.||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence 4446789999999999999996543 256889999999998875
No 169
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=68.07 E-value=9.8 Score=27.70 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=27.2
Q ss_pred cCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 130 TPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 130 a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
++.+|.+.++++.+|+ .+..|++++.++..
T Consensus 11 ~~~~g~i~~~~~~~g~-~v~~~~~l~~~~~~ 40 (74)
T cd06849 11 SMTEGTIVEWLVKEGD-SVEEGDVLAEVETD 40 (74)
T ss_pred CCcEEEEEEEEECCCC-EEcCCCEEEEEEeC
Confidence 6788999999999999 89999999999654
No 170
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=65.45 E-value=3.9 Score=43.81 Aligned_cols=42 Identities=26% Similarity=0.291 Sum_probs=37.3
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEe
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKIL 140 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~ 140 (426)
|.-...++++||.|.+||.|..=+. ...-+.||.+|+|.+|.
T Consensus 42 g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 42 GAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred CCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 3336889999999999999998876 78899999999999997
No 171
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=62.48 E-value=7.8 Score=40.99 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=30.6
Q ss_pred cceeecCCCeEEEEEeecCC-CccccCCcEEEEEEcC
Q psy16142 125 TMGFETPEEGYLAKILVPAG-SKDVPIGKLVCIIVEN 160 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G-~~~v~vG~~l~~i~~~ 160 (426)
-..|.||++|+|....+..| + .|..|++|+.|.+.
T Consensus 316 ~~~I~AP~dG~V~~~~~~~G~~-~V~~G~~l~~IvP~ 351 (457)
T TIGR01000 316 KGVIKAPEDGVLHLNPETKGIK-YVPKGTLIAQIYPI 351 (457)
T ss_pred CCEEECCCCeEEEecccCCCCc-EeCCCCEEEEEecC
Confidence 57899999999997788888 6 79999999999754
No 172
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=61.87 E-value=3 Score=40.72 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=22.0
Q ss_pred ccceeeecccccCCccccCcchhhhhcccccc
Q psy16142 95 EMGTIVSWAKKEGDKLNEGDLLAEIETDKATM 126 (426)
Q Consensus 95 d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ 126 (426)
.+|.|.+.++++||.|++||+|++++.-....
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~~~~a 39 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDPTDYEA 39 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--HHHHH
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEeeccch
Confidence 46999999999999999999999997544333
No 173
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=61.62 E-value=9.1 Score=37.58 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=39.6
Q ss_pred ecccccCCccccCcchhh------hhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 101 SWAKKEGDKLNEGDLLAE------IETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 101 ~w~v~vGd~Ve~gd~L~~------vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
.|=+..|..+.+|..+-- |..=-.+--|.||++|++.. .++.|+ .|+.|++|+++..
T Consensus 134 ~rgh~lGrvi~~G~a~~ntGipg~igG~~~Er~IrAp~~Gi~~~-~~~IGd-~V~KGqvLa~I~~ 196 (256)
T TIGR03309 134 NRGHNLGRVIYCGEALPNTGIPGEIGGYTHERVLRAPADGIVTP-TKAIGD-SVKKGDVIATVGD 196 (256)
T ss_pred CCCCcCeEEeeecccCCCCCCCcccccccceEEEECCCCeEEee-ccCCCC-EEeCCCEEEEEcC
Confidence 344555665655554432 11222256699999999955 899999 8999999999964
No 174
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=60.51 E-value=6.7 Score=44.20 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=30.7
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..|-||..|+|.++.|+.|+ .|+.|++|+.++.-
T Consensus 1080 ~higApmpG~Vv~v~V~~G~-~Vk~Gd~l~~ieAM 1113 (1149)
T COG1038 1080 GHIGAPMPGVVVEVKVKKGD-KVKKGDVLAVIEAM 1113 (1149)
T ss_pred cccCCCCCCceEEEEEccCC-eecCCCeeeehhhh
Confidence 34889999999999999999 79999999999754
No 175
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=59.34 E-value=15 Score=29.72 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=17.9
Q ss_pred EEEEeecCCCccccCCcEEEEEEcC
Q psy16142 136 LAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 136 v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
+..+.++.|+ .|+.|++|+.+...
T Consensus 52 l~~~~v~~G~-~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 52 LDSVSVKVGD-RVKAGQVIGTVGNT 75 (96)
T ss_dssp ESEESS-TTS-EE-TTCEEEEEBSC
T ss_pred cccccceecc-cccCCCEEEecCCC
Confidence 5566799999 89999999999743
No 176
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=57.81 E-value=13 Score=37.02 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.3
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..-+.||..|.+ +..++.|+ .|+.||+|++|.+.
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~-~V~~Gq~lg~I~dp 264 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGD-TIPAGQPLGRVVDL 264 (293)
T ss_pred eEEEecCCCeEE-EEecCCCC-EecCCCEEEEEECC
Confidence 556899999999 78899999 89999999999764
No 177
>KOG0369|consensus
Probab=57.69 E-value=8.4 Score=42.62 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=30.3
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
-.|-||..|+|.+|.|++|+ .|+.|++|+++..-
T Consensus 1107 g~igAPMpG~vieikvk~G~-kV~Kgqpl~VLSAM 1140 (1176)
T KOG0369|consen 1107 GHIGAPMPGTVIEIKVKEGA-KVKKGQPLAVLSAM 1140 (1176)
T ss_pred ccccCCCCCceEEEEEecCc-eecCCCceEeeecc
Confidence 34789999999999999999 79999999999653
No 178
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=57.48 E-value=10 Score=37.82 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=32.4
Q ss_pred eeeecccccCCccccCcchhhhhcc--cccceeecCCCeEEEEE
Q psy16142 98 TIVSWAKKEGDKLNEGDLLAEIETD--KATMGFETPEEGYLAKI 139 (426)
Q Consensus 98 ~i~~w~v~vGd~Ve~gd~L~~vetd--K~~~ei~a~~~G~v~~i 139 (426)
=+..+.++.|+.|++||.|++|-.- ....++.||.+|+|.-+
T Consensus 240 Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 240 GLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 3457789999999999999988221 22456899999999655
No 179
>KOG0238|consensus
Probab=57.10 E-value=9.4 Score=40.95 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=30.3
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
-.+.||..|+|.+++|++|+ .|..|+.|+.+...
T Consensus 602 ~v~~aPMpG~Iekv~Vkpgd-~V~~Gq~l~Vl~AM 635 (670)
T KOG0238|consen 602 GVIVAPMPGIIEKVLVKPGD-KVKEGQELVVLIAM 635 (670)
T ss_pred CceecCCCCeeeeeeccchh-hhcccCceEEEEec
Confidence 34789999999999999999 79999999998754
No 180
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=57.00 E-value=8.7 Score=39.42 Aligned_cols=52 Identities=31% Similarity=0.454 Sum_probs=37.1
Q ss_pred ecccccCCccccCcchhhhhcccc--cceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 101 SWAKKEGDKLNEGDLLAEIETDKA--TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 101 ~w~v~vGd~Ve~gd~L~~vetdK~--~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
...+++||.|.+|++|+| ||- .+-+.||.+|+|..|.. |++ =.--++++.++
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~R--G~K-RvLqsVVI~~~ 95 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHR--GEK-RVLQSVVIKVE 95 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeec--ccc-eeeeeEEEEec
Confidence 456899999999999995 443 46699999999988875 442 22334444443
No 181
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=56.54 E-value=15 Score=29.13 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 131 PEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 131 ~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
+..|+. ++++.|| .|..|++|++|....+
T Consensus 30 ~~vGi~--l~~k~Gd-~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 30 PAVGIE--LHKKVGD-RVEKGDPLATIYANDE 58 (75)
T ss_dssp TT-EEE--ESS-TTS-EEBTTSEEEEEEESSS
T ss_pred cCcCeE--ecCcCcC-EECCCCeEEEEEcCCh
Confidence 566766 8999999 7999999999986544
No 182
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=55.03 E-value=16 Score=36.30 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=29.8
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
...+.||.+|.+ +..++.|+ .|+.|++|+++.+.
T Consensus 219 ~~~v~A~~~G~~-~~~~~~Gd-~V~~G~~ig~i~d~ 252 (287)
T cd06251 219 SVWVRAPQGGLL-RSLVKLGD-KVKKGQLLATITDP 252 (287)
T ss_pred CeEEecCCCeEE-EEecCCCC-EECCCCEEEEEECC
Confidence 356999999999 56899999 89999999999764
No 183
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=54.93 E-value=16 Score=38.28 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=34.8
Q ss_pred hcccccceeecCCCeEEEEE-------------------------------eecCCCccccCCcEEEEEEcC
Q psy16142 120 ETDKATMGFETPEEGYLAKI-------------------------------LVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 120 etdK~~~ei~a~~~G~v~~i-------------------------------~v~~G~~~v~vG~~l~~i~~~ 160 (426)
-..+...+|.|+.+|+|..| +.+.|+ .|..|++|++|...
T Consensus 328 ~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~-~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 328 PKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGD-RVKKGDPLATLYSS 398 (405)
T ss_pred CCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcC-EeCCCCeEEEEeCC
Confidence 35677899999999999987 788999 89999999999854
No 184
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=54.66 E-value=18 Score=38.82 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=35.7
Q ss_pred hhcccccceeecCCCeEEEEE------------------------eecCCCccccCCcEEEEEEcCC
Q psy16142 119 IETDKATMGFETPEEGYLAKI------------------------LVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 119 vetdK~~~ei~a~~~G~v~~i------------------------~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
+..-+...+|.|+.+|+|..| +++.|+ .|..|++|++|..+.
T Consensus 407 ~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd-~V~~Gd~l~~i~a~~ 472 (493)
T TIGR02645 407 IEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGD-QVKKGDPLYTIYAES 472 (493)
T ss_pred cCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCC-EecCCCeEEEEECCC
Confidence 334577899999999999887 889999 899999999998543
No 185
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=53.51 E-value=17 Score=35.99 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=10.3
Q ss_pred eecccccCCccccCcchhhh
Q psy16142 100 VSWAKKEGDKLNEGDLLAEI 119 (426)
Q Consensus 100 ~~w~v~vGd~Ve~gd~L~~v 119 (426)
..++++.||.|++||+|++|
T Consensus 234 ~~~~~~~G~~V~~G~~lg~i 253 (288)
T cd06254 234 WYPFVKAGDTVQKGALLGYV 253 (288)
T ss_pred EEEecCCCCEecCCCEEEEE
Confidence 34445555555555555543
No 186
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=53.48 E-value=16 Score=36.58 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=29.9
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..-+.||.+|.+ ...++.|+ .|+.|++|++|.+.
T Consensus 229 ~~~v~A~~~Gl~-~~~~~~G~-~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIF-VPAKHLGD-IVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEE-EECcCCCC-EECCCCEEEEEeCC
Confidence 456999999999 67799999 89999999999764
No 187
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=53.06 E-value=17 Score=37.39 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=29.3
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.-+.||..|.+ ...++.|+ .|+.|++|++|.+.
T Consensus 290 ~~v~Ap~~Gl~-~~~~~~Gd-~V~~G~~lg~I~d~ 322 (359)
T cd06250 290 EMLYAPAGGMV-VYRAAPGD-WVEAGDVLAEILDP 322 (359)
T ss_pred EEEeCCCCeEE-EEecCCCC-EecCCCEEEEEECC
Confidence 34899999999 68899999 89999999999764
No 188
>PRK04350 thymidine phosphorylase; Provisional
Probab=52.77 E-value=20 Score=38.46 Aligned_cols=42 Identities=26% Similarity=0.421 Sum_probs=35.8
Q ss_pred hhcccccceeecCCCeEEEEE------------------------eecCCCccccCCcEEEEEEcCC
Q psy16142 119 IETDKATMGFETPEEGYLAKI------------------------LVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 119 vetdK~~~ei~a~~~G~v~~i------------------------~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
+-.-+...+|.|+.+|+|..| +++.|+ .|..|++|++|..+.
T Consensus 399 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd-~V~~G~~l~~i~a~~ 464 (490)
T PRK04350 399 IPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGD-KVKKGDPLYTIHAES 464 (490)
T ss_pred cCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCC-EecCCCeEEEEecCC
Confidence 344577899999999999887 889999 899999999998543
No 189
>PF14821 Thr_synth_N: Threonine synthase N terminus; PDB: 3V7N_A 1VB3_A 1KL7_A.
Probab=52.31 E-value=13 Score=29.76 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=24.0
Q ss_pred ecCCceEeec-ccC--------cCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHH
Q psy16142 362 NTDKGLFTPI-VFD--------ADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKA 413 (426)
Q Consensus 362 ~~~~GL~~pv-i~~--------a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 413 (426)
+.++||+||. |.. -..+|..|||..+-++. =++.|+++ +++.++++|
T Consensus 23 A~DGGLyvP~~iP~l~~~~l~~l~~~sy~elA~~il~~f---~~~di~~~--~L~~ii~~A 78 (79)
T PF14821_consen 23 APDGGLYVPEEIPKLSKEELEELKNLSYAELAFEILSPF---LGDDIPEE--ELKEIIEKA 78 (79)
T ss_dssp BTTSB-EEESS-----HHHHHHHTTS-HHHHHHHHHHHH---CCCCS-HH--HHHHHHHHH
T ss_pred CCCCeeEecCcCCCCCHHHHHHHHCCCHHHHHHHHHHHH---HccCCCHH--HHHHHHHHH
Confidence 4577899997 333 23566677776333331 14555554 666666654
No 190
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=51.74 E-value=21 Score=38.48 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=35.1
Q ss_pred hcccccceeecCCCeEEEEE------------------------eecCCCccccCCcEEEEEEcCC
Q psy16142 120 ETDKATMGFETPEEGYLAKI------------------------LVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 120 etdK~~~ei~a~~~G~v~~i------------------------~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
-.-+...+|.|+.+|+|..| +++.|+ .|..|++|++|..+.
T Consensus 409 ~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd-~V~~G~pl~~i~a~~ 473 (500)
T TIGR03327 409 QVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGE-KVKKGDPLYTIYAES 473 (500)
T ss_pred CCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcC-EeCCCCeEEEEECCC
Confidence 34566889999999999988 889999 899999999998543
No 191
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=50.54 E-value=22 Score=37.70 Aligned_cols=39 Identities=21% Similarity=0.435 Sum_probs=33.9
Q ss_pred ccccceeecCCCeEEEEE-------------------------------eecCCCccccCCcEEEEEEcCC
Q psy16142 122 DKATMGFETPEEGYLAKI-------------------------------LVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 122 dK~~~ei~a~~~G~v~~i-------------------------------~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
-+-..+|.|+.+|+|..| +++.|+ .|+.|++|++|..+.
T Consensus 336 a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd-~V~~Gd~l~~i~~~~ 405 (437)
T TIGR02643 336 APLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGD-RVEKGEPLAVVHAAD 405 (437)
T ss_pred CCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcC-EeCCCCeEEEEECCC
Confidence 466889999999999888 789999 799999999998543
No 192
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=49.77 E-value=21 Score=37.93 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=34.4
Q ss_pred cccccceeecCCCeEEEEE-------------------------------eecCCCccccCCcEEEEEEcCC
Q psy16142 121 TDKATMGFETPEEGYLAKI-------------------------------LVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 121 tdK~~~ei~a~~~G~v~~i-------------------------------~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
..+-..+|.|+.+|+|..| +++.|+ .|..|++|++|..+.
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~-~V~~Gd~l~~i~~~~ 406 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGD-RVDAGEPLATLHADD 406 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcC-EECCCCeEEEEeCCC
Confidence 4567889999999999877 789999 799999999998443
No 193
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=49.74 E-value=19 Score=38.04 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=34.2
Q ss_pred cccccceeecCCCeEEEEE-------------------------------eecCCCccccCCcEEEEEEcC
Q psy16142 121 TDKATMGFETPEEGYLAKI-------------------------------LVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 121 tdK~~~ei~a~~~G~v~~i-------------------------------~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.-+...+|.|+.+|+|..| +++.|+ .|..|++|++|..+
T Consensus 331 ~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~-~V~~g~~l~~i~~~ 400 (434)
T PRK06078 331 QAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGD-SVKKGESLATIYAN 400 (434)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcC-EeCCCCeEEEEeCC
Confidence 4566889999999999988 789999 89999999999843
No 194
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=48.81 E-value=22 Score=36.07 Aligned_cols=33 Identities=12% Similarity=0.323 Sum_probs=29.4
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
..-+.||..|.+ ...++.|+ .|+.|++|++|.+
T Consensus 255 ~~~v~Ap~~Gi~-~~~v~~G~-~V~~G~~lg~I~d 287 (325)
T TIGR02994 255 DCFIFAEDDGLI-EFMIDLGD-PVSKGDVIARVYP 287 (325)
T ss_pred CeEEEcCCCeEE-EEecCCCC-EeCCCCEEEEEEC
Confidence 345999999999 68899999 8999999999976
No 195
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=48.54 E-value=23 Score=35.66 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=30.0
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..-+.||..|.+ .-.++.|+ .|+.|++|++|.+.
T Consensus 244 ~~~v~A~~~G~~-~~~~~~G~-~V~~G~~lg~i~d~ 277 (316)
T cd06252 244 RCYVFAPHPGLF-EPLVDLGD-EVSAGQVAGRIHFP 277 (316)
T ss_pred cEEEEcCCCeEE-EEecCCCC-EEcCCCEEEEEECC
Confidence 456899999999 68899999 89999999999764
No 196
>COG3608 Predicted deacylase [General function prediction only]
Probab=48.47 E-value=24 Score=36.04 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=33.1
Q ss_pred hhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 116 LAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 116 L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
....+++ .--+.||.+|.| +.+++.|| .|+.|++|+++...
T Consensus 249 ~~~~~~~--~~~i~Ap~~G~v-~~~v~lGd-~VeaG~~la~i~~~ 289 (331)
T COG3608 249 GLALPSS--DEMIRAPAGGLV-EFLVDLGD-KVEAGDVLATIHDP 289 (331)
T ss_pred eeecccc--cceeecCCCceE-EEeecCCC-cccCCCeEEEEecC
Confidence 3445555 233999999999 89999999 79999999999764
No 197
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=48.03 E-value=21 Score=39.81 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=28.7
Q ss_pred ceeecCCCeEEEEE-----------------------------------eecCCCccccCCcEEEEEEc
Q psy16142 126 MGFETPEEGYLAKI-----------------------------------LVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 126 ~ei~a~~~G~v~~i-----------------------------------~v~~G~~~v~vG~~l~~i~~ 159 (426)
..|.||++|+|..+ ++++|| .|+.||+|++++-
T Consensus 536 ~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd-~V~~G~~l~~~D~ 603 (648)
T PRK10255 536 KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGA-QVSAGQPILEMDL 603 (648)
T ss_pred CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCC-EEcCCCEEEEEcH
Confidence 57889999988876 799999 7999999999964
No 198
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=47.48 E-value=23 Score=39.31 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=28.5
Q ss_pred ceeecCCCeEEEEE-----------------------------------eecCCCccccCCcEEEEEEc
Q psy16142 126 MGFETPEEGYLAKI-----------------------------------LVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 126 ~ei~a~~~G~v~~i-----------------------------------~v~~G~~~v~vG~~l~~i~~ 159 (426)
.+|.||++|+|..+ ++++|| .|+.||+|++++.
T Consensus 516 ~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~gF~~~v~~Gd-~V~~G~~l~~~D~ 583 (627)
T PRK09824 516 GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKFFTAHVNVGD-KVNTGDLLIEFDI 583 (627)
T ss_pred CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCCCceEEecCCC-EEcCCCEEEEEcH
Confidence 47889999988766 889999 7999999999964
No 199
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=46.95 E-value=24 Score=38.99 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=28.6
Q ss_pred ceeecCCCeEEEEE-----------------------------------eecCCCccccCCcEEEEEEc
Q psy16142 126 MGFETPEEGYLAKI-----------------------------------LVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 126 ~ei~a~~~G~v~~i-----------------------------------~v~~G~~~v~vG~~l~~i~~ 159 (426)
..|.||++|+|..+ ++++|| .|+.||+|++++-
T Consensus 500 ~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~gF~~~v~~g~-~V~~G~~l~~~d~ 567 (610)
T TIGR01995 500 GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEGFEILVKVGD-HVKAGQLLLTFDL 567 (610)
T ss_pred CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCCeEEEecCcC-EEcCCCEEEEecH
Confidence 57889999988776 899999 7999999999964
No 200
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.34 E-value=20 Score=31.83 Aligned_cols=43 Identities=23% Similarity=0.403 Sum_probs=34.1
Q ss_pred cceeeecccccCCccccCcchhhhhcccccce-eecCCCeEEEE
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMG-FETPEEGYLAK 138 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~e-i~a~~~G~v~~ 138 (426)
+|-++.....+|+.|.+||.++-+.|-|-.+- +++|.+|+|.-
T Consensus 99 EGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvy 142 (161)
T COG4072 99 EGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVY 142 (161)
T ss_pred CcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEE
Confidence 46677778888888888888888888887665 78888888843
No 201
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=41.31 E-value=30 Score=35.97 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=29.1
Q ss_pred hhcccccceeecCCCeEEEEE-------eecCCCccccCCcEEEE
Q psy16142 119 IETDKATMGFETPEEGYLAKI-------LVPAGSKDVPIGKLVCI 156 (426)
Q Consensus 119 vetdK~~~ei~a~~~G~v~~i-------~v~~G~~~v~vG~~l~~ 156 (426)
...+..--+|-|..+|+|.++ +|++|| .|+.||+|..
T Consensus 183 ~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd-~VkkGdvLIS 226 (385)
T PF06898_consen 183 EIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGD-TVKKGDVLIS 226 (385)
T ss_pred cccCCCCcceEECCCCEEEEEEecCCeEEecCCC-EECCCCEEEe
Confidence 333444577999999999998 577888 7999999874
No 202
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=40.60 E-value=24 Score=33.11 Aligned_cols=68 Identities=25% Similarity=0.367 Sum_probs=45.0
Q ss_pred EeccCCCCCcccceeeeccc-ccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEE
Q psy16142 85 VALPALSPTMEMGTIVSWAK-KEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156 (426)
Q Consensus 85 i~mP~lg~s~d~g~i~~w~v-~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~ 156 (426)
+.+-.++...- +.|.-|.. ++|+.|++||.+..++- -.++.+--|.+-+. ++.+++|+ .|..|+.|++
T Consensus 134 v~~v~Vga~~v-~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~-~V~~Ge~i~~ 202 (202)
T PF02666_consen 134 VAVVQVGALLV-GSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQ-KVRAGETIGY 202 (202)
T ss_pred EEEEEecccee-ceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCC-EEEeeeEEeC
Confidence 33333444333 33333433 68999999999998875 44555554544433 89999999 7999999874
No 203
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=38.46 E-value=22 Score=33.56 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=35.1
Q ss_pred ccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCc-EEEE
Q psy16142 103 AKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGK-LVCI 156 (426)
Q Consensus 103 ~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~-~l~~ 156 (426)
..+.|+.+++||.+..++-- .++++--|.+ .++.+++|+ .|..|+ +|++
T Consensus 155 ~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~-kV~~Getvi~~ 204 (206)
T PRK05305 155 YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQ-KVVAGETVLAR 204 (206)
T ss_pred eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCC-EEEcccEEEEE
Confidence 35778899999998887765 3555555554 278899998 699997 4444
No 204
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=38.24 E-value=34 Score=36.60 Aligned_cols=30 Identities=37% Similarity=0.476 Sum_probs=26.4
Q ss_pred CCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 131 PEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 131 ~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
-.+|+|.++++++|+ .|+.|++|+.++.+.
T Consensus 14 ~~eg~i~~w~v~~Gd-~V~~gd~l~~iETdK 43 (464)
T PRK11892 14 MEEGTLAKWLKKEGD-KVKSGDVIAEIETDK 43 (464)
T ss_pred cceeEEEEEEecCCC-EecCCCeEEEEEecc
Confidence 367999999999999 899999999997544
No 205
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=37.85 E-value=22 Score=33.19 Aligned_cols=47 Identities=30% Similarity=0.463 Sum_probs=34.6
Q ss_pred cccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEE
Q psy16142 104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVC 155 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~ 155 (426)
.++|+.+++||.+..++-- .++++--|.+ .++.+++|+ .|..|+.|+
T Consensus 136 ~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~-~V~~G~tli 182 (189)
T TIGR00164 136 VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGE-KVTAGETVL 182 (189)
T ss_pred cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCC-EEEeceEEE
Confidence 4678899999998887755 4555556655 267889998 699998553
No 206
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=36.94 E-value=45 Score=36.65 Aligned_cols=56 Identities=20% Similarity=0.330 Sum_probs=43.1
Q ss_pred ccccCCccccCcchhhh-hccccccee--ecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 103 AKKEGDKLNEGDLLAEI-ETDKATMGF--ETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 103 ~v~vGd~Ve~gd~L~~v-etdK~~~ei--~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.+++||.|..||.+.+| ||.-...-| +.-..|+|+.| +.+|+ ..+.++|+.++..+
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~--ytv~~~i~~~~~~g 181 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN--YTVDDTVLEVEFQG 181 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEEEeeCC
Confidence 58899999999999975 565444444 44557999766 67886 79999999998633
No 207
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=35.90 E-value=54 Score=26.48 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=18.5
Q ss_pred EEEEeecCCCccccCCcEEEEEEcC
Q psy16142 136 LAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 136 v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
-.++++++|+ .|..|++|+++..+
T Consensus 46 ~v~~~~~dG~-~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 46 EVEWLVKDGD-RVEPGDVILEIEGP 69 (88)
T ss_dssp EEEESS-TT--EEETTCEEEEEEEE
T ss_pred EEEEEeCCCC-CccCCcEEEEEEeC
Confidence 3478999999 89999999999753
No 208
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=35.55 E-value=13 Score=30.14 Aligned_cols=24 Identities=42% Similarity=0.811 Sum_probs=19.1
Q ss_pred eeecccccCCccccCcchhhhhcc
Q psy16142 99 IVSWAKKEGDKLNEGDLLAEIETD 122 (426)
Q Consensus 99 i~~w~v~vGd~Ve~gd~L~~vetd 122 (426)
-.+|+++.|+.|++|+.|++++.+
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEEeC
Confidence 357999999999999999998763
No 209
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=35.22 E-value=56 Score=34.42 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=35.1
Q ss_pred hhcccccceeecCCCeEEEEE-------------------------------eecCCCccccCCcEEEEEEcCC
Q psy16142 119 IETDKATMGFETPEEGYLAKI-------------------------------LVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 119 vetdK~~~ei~a~~~G~v~~i-------------------------------~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
+..-+-..+|.|..+|+|.++ +.+.|+ .|++|++|+.|....
T Consensus 330 l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge-~Vk~Gd~l~tiya~~ 402 (435)
T COG0213 330 LPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGE-KVKKGDPLATIYAES 402 (435)
T ss_pred cccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCC-eeccCCeEEEEecCC
Confidence 334567889999999999887 778999 899999999998743
No 210
>PF13437 HlyD_3: HlyD family secretion protein
Probab=34.68 E-value=21 Score=29.19 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=22.6
Q ss_pred ceeeecccccCCccccCcchhhhhc
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIET 121 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vet 121 (426)
|.|..+..+.|+.|..|+.|++|..
T Consensus 8 G~V~~~~~~~G~~v~~g~~l~~i~~ 32 (105)
T PF13437_consen 8 GVVVSINVQPGEVVSAGQPLAEIVD 32 (105)
T ss_pred EEEEEEeCCCCCEECCCCEEEEEEc
Confidence 7788999999999999999998864
No 211
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=34.18 E-value=54 Score=33.99 Aligned_cols=56 Identities=20% Similarity=0.346 Sum_probs=42.0
Q ss_pred ccccCCccccCcchhhh-hccccccee--ecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 103 AKKEGDKLNEGDLLAEI-ETDKATMGF--ETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 103 ~v~vGd~Ve~gd~L~~v-etdK~~~ei--~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.+++||.|..||.+..| |+.=.+.-| +.-..|+|+. .+.+|+ ..+.++++.++..+
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~-~~~~g~--~~~~~~~~~~~~~g 112 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTY-IAPAGD--YTVDDVILEVEFDG 112 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEE-EecCCC--eeEEEEEEEEEeCC
Confidence 46999999999999987 554345445 4445999965 466786 78999999998643
No 212
>KOG0368|consensus
Probab=31.93 E-value=33 Score=41.44 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=37.0
Q ss_pred ccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 111 NEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 111 e~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
.-+..-|.+|-+-=-.-+.||..|.+.+.+|+.|+ .|.+|++-|+++.
T Consensus 671 tIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~-hv~~Gq~YAeiEv 718 (2196)
T KOG0368|consen 671 TIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGE-HVEAGQPYAEIEV 718 (2196)
T ss_pred EECCeEEEEecCCCcceecCCCCccceEEEecCCC-ceecCCeeeeheh
Confidence 34444444444433445899999999999999999 8999999999974
No 213
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=30.71 E-value=50 Score=34.35 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=25.6
Q ss_pred cceeecCCCeEEEEE-------eecCCCccccCCcEEEE
Q psy16142 125 TMGFETPEEGYLAKI-------LVPAGSKDVPIGKLVCI 156 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i-------~v~~G~~~v~vG~~l~~ 156 (426)
--+|-|..+|+|.++ .|++|| .|+.||+|..
T Consensus 186 P~~lVA~kdGvI~~i~v~~G~p~Vk~GD-~VkkGqvLIs 223 (382)
T TIGR02876 186 PRNIVAKKDGVIKRVYVTSGEPVVKKGD-VVKKGDLLIS 223 (382)
T ss_pred CccEEECCCCEEEEEEEcCCeEEEccCC-EEcCCCEEEE
Confidence 457999999999998 567788 7888988874
No 214
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=30.46 E-value=27 Score=36.98 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=25.4
Q ss_pred cccceeeecccccCCccccCcchhhhhccc
Q psy16142 94 MEMGTIVSWAKKEGDKLNEGDLLAEIETDK 123 (426)
Q Consensus 94 ~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK 123 (426)
+|.+....++++.||.|++||+|+.|=+++
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 466778899999999999999999875543
No 215
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=30.17 E-value=60 Score=35.23 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=43.1
Q ss_pred cccCCccccCcchhhh-hcccc-cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 104 KKEGDKLNEGDLLAEI-ETDKA-TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~v-etdK~-~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
+++||.|..||+|..| ||--+ .+-++.+..|.+..+.+.+|+ ..+.++|++++.+..
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~--ytv~d~ia~v~~~~g 180 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE--YTVEDVIATVSTEGG 180 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC--ceeeEEEEEEecCCC
Confidence 3899999999999976 55422 222556667777688888996 799999999976544
No 216
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=29.17 E-value=41 Score=30.65 Aligned_cols=29 Identities=38% Similarity=0.431 Sum_probs=24.8
Q ss_pred cceeeecccccCCccccCcchhhhhcccc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKA 124 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~ 124 (426)
.|+.-+-++++||.|++||.|+++.-+..
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHH
Confidence 57778889999999999999999876643
No 217
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=28.51 E-value=14 Score=32.11 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.9
Q ss_pred cceeeecccccCCccccCcchhhhhccc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDK 123 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK 123 (426)
.|..-+++++.||.|++||.|+++.-+.
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 4677799999999999999999886544
No 218
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=28.10 E-value=47 Score=42.55 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=24.4
Q ss_pred eecccccCCccccCcchhhhhcccccceeecCCCeEE
Q psy16142 100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYL 136 (426)
Q Consensus 100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v 136 (426)
+..+++.|+.|++|+.|++.. --+..|-++.+|+|
T Consensus 2422 a~l~v~~g~~V~~g~~la~wd--p~~~piisE~~G~v 2456 (2836)
T PRK14844 2422 AKLYVDEGGSVKIGDKVAEWD--PYTLPIITEKTGTV 2456 (2836)
T ss_pred cEEEecCCCEecCCCEEEEEc--CCCcceEeecceEE
Confidence 567899999999999999763 33444444444444
No 219
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=28.03 E-value=25 Score=28.13 Aligned_cols=20 Identities=40% Similarity=0.773 Sum_probs=14.6
Q ss_pred ccccccccCcCCccchHHHH
Q psy16142 388 RSLISFRRPVKFSEESNDVK 407 (426)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~ 407 (426)
+|.|-|.||+||.+-...++
T Consensus 11 KRIi~f~RPvkf~dl~~kv~ 30 (79)
T cd06405 11 KRIIQFPRPVKFKDLQQKVT 30 (79)
T ss_pred eEEEecCCCccHHHHHHHHH
Confidence 47899999999975544443
No 220
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=27.76 E-value=17 Score=30.16 Aligned_cols=38 Identities=24% Similarity=0.383 Sum_probs=28.1
Q ss_pred ccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 388 RSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
+.||.|++-..=.|-...+++|+...-+|+++++||+-
T Consensus 10 ~tLi~ls~~~~qpe~~~~Vr~LV~~L~~~~i~~EeF~~ 47 (92)
T smart00549 10 TTLIQLSNDISQPEVAERVRTLVLGLVNGTITAEEFTS 47 (92)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34454444433356666999999999999999999963
No 221
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=27.76 E-value=13 Score=32.77 Aligned_cols=29 Identities=34% Similarity=0.428 Sum_probs=22.2
Q ss_pred cceeeecccccCCccccCcchhhhhcccc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKA 124 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~ 124 (426)
.|..-+|+++.||.|++||+|+++.-++.
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence 56778999999999999999998866543
No 222
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=27.75 E-value=37 Score=33.44 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=26.2
Q ss_pred eeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 127 GFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 127 ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
-+..++-|..-+.+|++|| .|+.||+|.+=
T Consensus 31 l~~~Df~g~~Pkm~VkeGD-~Vk~Gq~LF~d 60 (257)
T PF05896_consen 31 LLPDDFPGMKPKMLVKEGD-RVKAGQPLFED 60 (257)
T ss_pred EcCcccCCCCccEEeccCC-EEeCCCeeEee
Confidence 3667888999999999999 79999999854
No 223
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=27.02 E-value=38 Score=37.48 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=24.5
Q ss_pred cceeeecccccCCccccCcchhhhhcccc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKA 124 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~ 124 (426)
+|+.-+.++++||.|++||.|+++.-++.
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i 570 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDKI 570 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHHH
Confidence 56677999999999999999999866543
No 224
>KOG1668|consensus
Probab=26.27 E-value=20 Score=34.57 Aligned_cols=28 Identities=18% Similarity=0.193 Sum_probs=26.2
Q ss_pred eecccccCCccccCcchhhhhcccccce
Q psy16142 100 VSWAKKEGDKLNEGDLLAEIETDKATMG 127 (426)
Q Consensus 100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~e 127 (426)
..|++.+|..+++-|..|.||.||+.++
T Consensus 180 asklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 180 ASKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred cccccccccceeeEEEEEEEEcCccccc
Confidence 5799999999999999999999999876
No 225
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=26.16 E-value=34 Score=35.88 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=24.4
Q ss_pred cccceeeecccccCCccccCcchhhhhc
Q psy16142 94 MEMGTIVSWAKKEGDKLNEGDLLAEIET 121 (426)
Q Consensus 94 ~d~g~i~~w~v~vGd~Ve~gd~L~~vet 121 (426)
+|.+....++++.||.|++||+|+.|=+
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~ 397 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYS 397 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeC
Confidence 5667778999999999999999998753
No 226
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=25.42 E-value=2.3e+02 Score=20.58 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhccccc
Q psy16142 303 IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEAN 341 (426)
Q Consensus 303 ~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n 341 (426)
..+++.++...+.. .-|+|.-|+.++..+|.+...++
T Consensus 13 ~~l~~~lk~~A~~~--gRS~NsEIv~~L~~~l~~e~~i~ 49 (50)
T PF03869_consen 13 EELKEKLKERAEEN--GRSMNSEIVQRLEEALKKEGRIQ 49 (50)
T ss_dssp HHHHHHHHHHHHHT--TS-HHHHHHHHHHHHHHHCTSSC
T ss_pred HHHHHHHHHHHHHh--CCChHHHHHHHHHHHHhccccCC
Confidence 34566666554443 46999999999999999877665
No 227
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=25.00 E-value=32 Score=33.58 Aligned_cols=27 Identities=33% Similarity=0.625 Sum_probs=25.3
Q ss_pred ccceeeecccccCCccccCcchhhhhc
Q psy16142 95 EMGTIVSWAKKEGDKLNEGDLLAEIET 121 (426)
Q Consensus 95 d~g~i~~w~v~vGd~Ve~gd~L~~vet 121 (426)
..|.+.++++++||.|++||.|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 468999999999999999999999987
No 228
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=24.65 E-value=85 Score=25.68 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=24.1
Q ss_pred CCeEEEEEeecC-CCccccCCcEEEEEEcCCc
Q psy16142 132 EEGYLAKILVPA-GSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 132 ~~G~v~~i~v~~-G~~~v~vG~~l~~i~~~~~ 162 (426)
.-|.|..+..+. |+ .|..|++|+.|+....
T Consensus 27 ~lG~i~~i~~~~~G~-~v~~g~~l~~iEs~k~ 57 (96)
T cd06848 27 LLGDIVFVELPEVGT-EVKKGDPFGSVESVKA 57 (96)
T ss_pred hCCCEEEEEecCCCC-EEeCCCEEEEEEEccE
Confidence 367787876666 98 8999999999987554
No 229
>PRK11637 AmiB activator; Provisional
Probab=24.59 E-value=84 Score=32.94 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 136 LAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 136 v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
+..+.|.+|+ .|..|++|+.+...+
T Consensus 378 ~~~~~v~~G~-~V~~G~~ig~~g~~g 402 (428)
T PRK11637 378 NQSALVSVGA-QVRAGQPIALVGSSG 402 (428)
T ss_pred CCcCCCCCcC-EECCCCeEEeecCCC
Confidence 4456799999 899999999997654
No 230
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=24.02 E-value=31 Score=30.15 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=23.8
Q ss_pred cceeeecccccCCccccCcchhhhhccc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDK 123 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK 123 (426)
.+..-+++++.||.|++||+|+++.-+.
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~~ 105 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLPA 105 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 4677899999999999999999886543
No 231
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=23.56 E-value=50 Score=28.56 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=10.4
Q ss_pred eeecCCCeEEEEEeecC
Q psy16142 127 GFETPEEGYLAKILVPA 143 (426)
Q Consensus 127 ei~a~~~G~v~~i~v~~ 143 (426)
-+.|+.+|+|.+|...+
T Consensus 4 v~~As~~G~I~~I~~~e 20 (118)
T PF01333_consen 4 VYNASAAGTITKITRKE 20 (118)
T ss_dssp --B-SSSEEEEEEEEET
T ss_pred eEcccCCeEEEEEEEcC
Confidence 35678888888887543
No 232
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=23.35 E-value=47 Score=36.93 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=24.0
Q ss_pred cceeeecccccCCccccCcchhhhhccc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDK 123 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK 123 (426)
+|+.-+.++++||.|++||+|+++.-++
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 5666799999999999999999986653
No 233
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=22.87 E-value=21 Score=32.89 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=24.2
Q ss_pred cceeeecccccCCccccCcchhhhhccc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDK 123 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK 123 (426)
.|..-+++++.||.|++||+|+++.-+.
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 4677899999999999999999886654
No 234
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=22.36 E-value=49 Score=32.59 Aligned_cols=54 Identities=28% Similarity=0.404 Sum_probs=39.0
Q ss_pred eeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 99 IVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 99 i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
+..|.. .|+.|++||.+..++-- .++.+--|. |.+ ++.+++|+ .|..|+.|+.|
T Consensus 212 i~~~~~-~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~-~V~~Ge~ig~~ 265 (265)
T PRK03934 212 IQTYEY-ENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGK-SVKFGESIGEI 265 (265)
T ss_pred eeeecc-CCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCC-EEEcchhhccC
Confidence 344443 39999999999988764 455555454 344 68899999 79999999754
No 235
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=21.98 E-value=35 Score=29.91 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=17.2
Q ss_pred ChHHHHHHHHcCCCCcCc
Q psy16142 224 SPLAKRLAAEKGLDLSSI 241 (426)
Q Consensus 224 sP~aR~lA~e~gIDl~~v 241 (426)
-|.+|.||.++||+++.|
T Consensus 35 LPSvRelA~~~~VNpnTv 52 (125)
T COG1725 35 LPSVRELAKDLGVNPNTV 52 (125)
T ss_pred CCcHHHHHHHhCCCHHHH
Confidence 699999999999999999
No 236
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=21.56 E-value=1.2e+02 Score=35.90 Aligned_cols=54 Identities=28% Similarity=0.409 Sum_probs=42.1
Q ss_pred cccCCccccCcchhhh-hccccccee--ecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 104 KKEGDKLNEGDLLAEI-ETDKATMGF--ETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~v-etdK~~~ei--~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
+++||.|..||.+.+| ||.=...-| +.-..|+|+.| +.+|+ ..+.++|+.++..
T Consensus 124 ~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~--~~~~~~~~~~~~~ 180 (1017)
T PRK14698 124 VKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE--YTIEEVIAKVKTP 180 (1017)
T ss_pred eecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC--cceeeEEEEEEcC
Confidence 7889999999999987 554444444 45558999666 67896 7999999999863
No 237
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=20.57 E-value=45 Score=35.35 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=24.1
Q ss_pred CcccceeeecccccCCccccCcchhhhh
Q psy16142 93 TMEMGTIVSWAKKEGDKLNEGDLLAEIE 120 (426)
Q Consensus 93 s~d~g~i~~w~v~vGd~Ve~gd~L~~ve 120 (426)
-+|.+....+++++||.|++||+|+.|=
T Consensus 375 ~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 375 TIDYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred CcCcccCeEeccCCcCEeCCCCeEEEEE
Confidence 3556777899999999999999999875
No 238
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=20.49 E-value=46 Score=35.34 Aligned_cols=29 Identities=17% Similarity=0.416 Sum_probs=24.7
Q ss_pred CCcccceeeecccccCCccccCcchhhhh
Q psy16142 92 PTMEMGTIVSWAKKEGDKLNEGDLLAEIE 120 (426)
Q Consensus 92 ~s~d~g~i~~w~v~vGd~Ve~gd~L~~ve 120 (426)
.-+|.+....++++.||.|++||+|+.|=
T Consensus 375 ~~id~~aGi~l~~k~G~~V~~Gd~l~~i~ 403 (440)
T PRK05820 375 DPIDYSVGLTLHARLGDRVDAGEPLATLH 403 (440)
T ss_pred CCCCcCCCeEEccCCcCEECCCCeEEEEe
Confidence 34556777899999999999999999875
No 239
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=20.14 E-value=79 Score=26.55 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=22.9
Q ss_pred cCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 130 TPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 130 a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
....|.-.+.+|++|| .|..||.|+...
T Consensus 35 ~qh~G~~~~p~V~~Gd-~V~~GQ~Ia~~~ 62 (101)
T PF13375_consen 35 RQHIGAPAEPVVKVGD-KVKKGQLIAEAE 62 (101)
T ss_pred cccCCCcceEEEcCCC-EEcCCCEEEecC
Confidence 3445666789999999 799999999874
Done!