Query psy16142
Match_columns 426
No_of_seqs 320 out of 2732
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 21:55:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 8.2E-60 2.8E-64 486.8 3.7 311 83-425 3-341 (428)
2 3mae_A 2-oxoisovalerate dehydr 100.0 1.4E-29 4.8E-34 244.7 13.5 129 278-425 16-160 (256)
3 3rqc_A Probable lipoamide acyl 100.0 8.7E-29 3E-33 235.0 12.7 125 278-425 4-145 (224)
4 1dpb_A Dihydrolipoyl-transacet 100.0 1.5E-28 5E-33 236.1 13.8 128 279-425 14-158 (243)
5 3b8k_A PDCE2;, dihydrolipoylly 100.0 2.1E-28 7.2E-33 234.5 13.5 128 278-425 10-152 (239)
6 3l60_A Branched-chain alpha-ke 100.0 2.2E-28 7.4E-33 235.6 13.1 121 281-425 16-155 (250)
7 1scz_A E2, dihydrolipoamide su 100.0 1.2E-28 3.9E-33 235.5 10.9 127 280-425 4-146 (233)
8 2ii3_A Lipoamide acyltransfera 99.9 3.6E-28 1.2E-32 235.7 12.3 129 278-425 29-173 (262)
9 1zy8_K Pyruvate dehydrogenase 99.9 1.2E-27 4E-32 227.6 4.1 163 83-260 4-167 (229)
10 3cla_A Type III chloramphenico 99.8 3.6E-19 1.2E-23 167.6 11.0 88 318-425 46-136 (213)
11 2xt6_A 2-oxoglutarate decarbox 99.8 1.7E-19 6E-24 204.1 10.1 104 303-425 23-136 (1113)
12 1q23_A Chloramphenicol acetylt 99.8 2E-18 6.8E-23 163.2 10.8 87 318-425 51-140 (219)
13 2i9d_A Chloramphenicol acetylt 99.7 8.3E-18 2.8E-22 158.7 8.2 87 319-425 49-144 (217)
14 2dne_A Dihydrolipoyllysine-res 99.6 1.6E-15 5.5E-20 128.0 7.5 87 81-167 6-92 (108)
15 2dnc_A Pyruvate dehydrogenase 99.6 1.6E-15 5.4E-20 125.8 6.7 80 82-162 7-87 (98)
16 1k8m_A E2 component of branche 99.6 3E-15 1E-19 122.9 7.6 77 83-160 5-81 (93)
17 1y8o_B Dihydrolipoyllysine-res 99.6 4E-15 1.4E-19 129.1 8.4 84 82-165 27-110 (128)
18 3crk_C Dihydrolipoyllysine-res 99.6 3.1E-15 1.1E-19 121.0 7.2 81 82-162 5-85 (87)
19 1ghj_A E2, E2, the dihydrolipo 99.5 1.4E-14 4.8E-19 114.7 6.7 75 84-159 3-77 (79)
20 1pmr_A Dihydrolipoyl succinylt 99.5 5.3E-15 1.8E-19 117.7 2.2 76 83-159 3-78 (80)
21 3l60_A Branched-chain alpha-ke 99.5 2.8E-15 9.5E-20 144.2 -0.6 100 18-117 125-239 (250)
22 3mae_A 2-oxoisovalerate dehydr 99.5 4.9E-15 1.7E-19 143.0 -0.1 97 20-116 132-243 (256)
23 2l5t_A Lipoamide acyltransfera 99.5 1E-13 3.4E-18 109.2 7.1 74 84-158 3-76 (77)
24 1dpb_A Dihydrolipoyl-transacet 99.4 9.1E-15 3.1E-19 140.2 0.5 99 19-117 129-242 (243)
25 2ii3_A Lipoamide acyltransfera 99.4 1.1E-14 3.7E-19 141.1 0.1 100 18-117 143-258 (262)
26 1scz_A E2, dihydrolipoamide su 99.4 1.2E-14 4E-19 138.6 0.3 100 18-117 116-230 (233)
27 1qjo_A Dihydrolipoamide acetyl 99.4 1.3E-13 4.3E-18 109.3 5.7 75 83-160 3-77 (80)
28 1iyu_A E2P, dihydrolipoamide a 99.4 4.4E-13 1.5E-17 106.1 6.5 73 84-160 3-75 (79)
29 3b8k_A PDCE2;, dihydrolipoylly 99.4 1.6E-13 5.4E-18 131.2 2.9 99 19-117 123-238 (239)
30 3rqc_A Probable lipoamide acyl 99.4 1.1E-13 3.6E-18 131.2 1.3 99 18-117 115-221 (224)
31 3dva_I Dihydrolipoyllysine-res 99.3 8.3E-14 2.8E-18 143.6 0.0 100 18-117 311-425 (428)
32 1gjx_A Pyruvate dehydrogenase; 99.3 2.6E-13 8.8E-18 107.9 2.2 76 83-160 3-78 (81)
33 2k7v_A Dihydrolipoyllysine-res 99.3 2.3E-12 8E-17 103.5 4.4 71 84-161 4-74 (85)
34 2kcc_A Acetyl-COA carboxylase 99.1 2E-11 6.7E-16 98.0 4.0 63 96-160 13-75 (84)
35 3n6r_A Propionyl-COA carboxyla 99.1 4.5E-11 1.5E-15 130.0 7.5 61 97-158 621-681 (681)
36 1z6h_A Biotin/lipoyl attachmen 99.1 7.1E-11 2.4E-15 91.2 5.0 63 96-159 7-69 (72)
37 2eq9_C Pyruvate dehydrogenase 99.1 6.4E-11 2.2E-15 82.3 3.8 38 222-260 2-39 (41)
38 1bdo_A Acetyl-COA carboxylase; 99.1 7.6E-11 2.6E-15 93.2 4.1 59 99-158 22-80 (80)
39 2eq7_C 2-oxoglutarate dehydrog 99.0 9E-11 3.1E-15 81.1 3.6 37 223-260 2-38 (40)
40 3rnm_E Lipoamide acyltransfera 99.0 6.2E-11 2.1E-15 88.6 2.9 41 219-260 6-46 (58)
41 2eq8_C Pyruvate dehydrogenase 99.0 9.5E-11 3.2E-15 81.0 3.5 37 223-260 2-38 (40)
42 2xt6_A 2-oxoglutarate decarbox 99.0 2.5E-11 8.5E-16 137.8 0.5 97 18-114 106-223 (1113)
43 2dn8_A Acetyl-COA carboxylase 99.0 1.5E-10 5.1E-15 95.8 4.8 63 96-160 25-87 (100)
44 2jku_A Propionyl-COA carboxyla 99.0 7.3E-11 2.5E-15 96.7 1.7 62 96-158 33-94 (94)
45 3u9t_A MCC alpha, methylcroton 99.0 7.5E-11 2.6E-15 128.1 0.7 63 97-160 611-673 (675)
46 1dcz_A Transcarboxylase 1.3S s 99.0 5.5E-10 1.9E-14 87.3 5.2 62 96-158 16-77 (77)
47 1w85_I Dihydrolipoyllysine-res 99.0 3.1E-10 1.1E-14 82.0 3.3 40 220-260 6-45 (49)
48 2d5d_A Methylmalonyl-COA decar 98.9 6.6E-10 2.3E-14 85.9 5.3 62 96-158 13-74 (74)
49 1bal_A Dihydrolipoamide succin 98.9 3.5E-10 1.2E-14 82.4 3.4 40 220-260 9-48 (51)
50 2ejm_A Methylcrotonoyl-COA car 98.9 8.8E-10 3E-14 91.0 4.9 64 97-161 23-86 (99)
51 3va7_A KLLA0E08119P; carboxyla 98.9 9.4E-10 3.2E-14 126.2 5.3 60 97-157 1176-1235(1236)
52 3hbl_A Pyruvate carboxylase; T 98.9 1.5E-09 5.2E-14 124.0 6.1 63 97-160 1086-1148(1150)
53 2coo_A Lipoamide acyltransfera 98.8 2.7E-09 9.3E-14 82.7 5.1 40 220-260 15-54 (70)
54 2f60_K Pyruvate dehydrogenase 98.8 9E-10 3.1E-14 84.0 2.1 40 220-260 9-48 (64)
55 1w4i_A Pyruvate dehydrogenase 98.8 1.7E-09 5.7E-14 82.0 3.2 40 220-260 4-43 (62)
56 3bg3_A Pyruvate carboxylase, m 98.5 1.6E-08 5.5E-13 110.1 1.0 60 97-157 658-717 (718)
57 1zko_A Glycine cleavage system 98.5 7.6E-08 2.6E-12 84.0 4.2 57 104-161 53-116 (136)
58 2qf7_A Pyruvate carboxylase pr 98.5 4.1E-08 1.4E-12 112.4 2.5 61 97-158 1104-1164(1165)
59 2k32_A A; NMR {Campylobacter j 98.3 1.8E-07 6E-12 78.8 3.2 67 96-163 9-105 (116)
60 1q23_A Chloramphenicol acetylt 98.2 1.2E-07 4.1E-12 89.2 -0.2 91 16-113 107-215 (219)
61 1onl_A Glycine cleavage system 97.9 6.9E-06 2.3E-10 70.9 3.9 57 104-161 44-107 (128)
62 1hpc_A H protein of the glycin 97.8 3.4E-06 1.2E-10 73.1 1.2 57 104-160 44-106 (131)
63 3a7l_A H-protein, glycine clea 97.8 8.8E-06 3E-10 70.2 2.9 57 104-160 45-107 (128)
64 3cla_A Type III chloramphenico 97.7 5.7E-06 1.9E-10 77.4 0.5 93 16-112 102-210 (213)
65 2i9d_A Chloramphenicol acetylt 97.2 4.6E-05 1.6E-09 71.4 -0.3 88 16-108 105-214 (217)
66 2f1m_A Acriflavine resistance 97.1 0.00016 5.5E-09 69.1 2.1 65 96-161 30-167 (277)
67 3lnn_A Membrane fusion protein 97.0 0.00039 1.3E-08 68.9 3.8 65 96-161 65-206 (359)
68 3fpp_A Macrolide-specific effl 96.9 0.00045 1.5E-08 67.9 3.9 35 126-161 154-191 (341)
69 3ne5_B Cation efflux system pr 96.9 0.00046 1.6E-08 70.3 4.0 64 96-160 129-241 (413)
70 3klr_A Glycine cleavage system 96.9 0.00038 1.3E-08 59.6 2.7 41 105-145 41-81 (125)
71 3mxu_A Glycine cleavage system 96.8 0.00056 1.9E-08 59.9 2.7 42 104-145 62-103 (143)
72 3tzu_A GCVH, glycine cleavage 96.7 0.00051 1.8E-08 59.7 1.9 38 104-141 57-94 (137)
73 2dn8_A Acetyl-COA carboxylase 96.6 0.0015 5.3E-08 53.2 4.3 48 113-161 5-52 (100)
74 1vf7_A Multidrug resistance pr 96.5 0.00064 2.2E-08 68.0 1.6 65 96-161 51-174 (369)
75 3hgb_A Glycine cleavage system 96.2 0.002 6.7E-08 57.0 2.7 38 104-141 67-104 (155)
76 4dk0_A Putative MACA; alpha-ha 96.1 0.00066 2.3E-08 67.4 -1.4 32 127-159 156-190 (369)
77 1z6h_A Biotin/lipoyl attachmen 95.9 0.0089 3E-07 45.1 4.8 34 127-161 1-34 (72)
78 1dcz_A Transcarboxylase 1.3S s 95.7 0.011 3.8E-07 45.2 4.7 36 125-161 8-43 (77)
79 2d5d_A Methylmalonyl-COA decar 95.7 0.013 4.5E-07 44.2 4.8 35 126-161 6-40 (74)
80 2k32_A A; NMR {Campylobacter j 95.3 0.016 5.4E-07 48.1 4.6 34 126-160 2-35 (116)
81 2kcc_A Acetyl-COA carboxylase 95.2 0.014 4.9E-07 45.9 3.7 36 125-161 5-40 (84)
82 3na6_A Succinylglutamate desuc 94.9 0.027 9.1E-07 55.7 5.5 59 99-160 267-329 (331)
83 3cdx_A Succinylglutamatedesucc 94.6 0.033 1.1E-06 55.5 5.3 59 99-160 277-339 (354)
84 3fmc_A Putative succinylglutam 94.3 0.046 1.6E-06 54.8 5.7 59 98-159 299-363 (368)
85 2ejm_A Methylcrotonoyl-COA car 94.2 0.038 1.3E-06 44.7 4.0 36 125-161 14-49 (99)
86 2jku_A Propionyl-COA carboxyla 94.2 0.027 9.4E-07 45.2 3.0 35 125-160 25-59 (94)
87 1bdo_A Acetyl-COA carboxylase; 93.2 0.056 1.9E-06 41.6 3.1 35 126-161 5-46 (80)
88 2l5t_A Lipoamide acyltransfera 92.3 0.058 2E-06 41.2 2.1 32 129-161 11-42 (77)
89 1f3z_A EIIA-GLC, glucose-speci 91.6 0.16 5.3E-06 45.2 4.3 58 97-159 21-117 (161)
90 1qjo_A Dihydrolipoamide acetyl 91.5 0.17 5.8E-06 38.8 4.0 28 133-161 14-41 (80)
91 3crk_C Dihydrolipoyllysine-res 91.5 0.15 5.3E-06 40.0 3.8 31 131-162 17-47 (87)
92 2k7v_A Dihydrolipoyllysine-res 91.3 0.016 5.5E-07 45.5 -2.2 36 125-161 2-37 (85)
93 1ghj_A E2, E2, the dihydrolipo 91.3 0.099 3.4E-06 40.1 2.4 31 130-161 12-42 (79)
94 1gjx_A Pyruvate dehydrogenase; 91.1 0.16 5.3E-06 39.1 3.5 33 128-161 10-42 (81)
95 3lnn_A Membrane fusion protein 91.1 0.1 3.6E-06 51.2 3.0 47 114-161 45-92 (359)
96 2f1m_A Acriflavine resistance 91.1 0.091 3.1E-06 49.7 2.5 42 117-160 15-56 (277)
97 1k8m_A E2 component of branche 91.0 0.21 7.2E-06 39.9 4.2 31 131-162 16-46 (93)
98 2dnc_A Pyruvate dehydrogenase 90.9 0.19 6.6E-06 40.6 3.9 30 132-162 20-49 (98)
99 2dne_A Dihydrolipoyllysine-res 90.3 0.23 7.9E-06 40.9 3.9 29 132-161 20-48 (108)
100 2gpr_A Glucose-permease IIA co 90.3 0.2 6.7E-06 44.2 3.6 58 97-159 16-112 (154)
101 1ax3_A Iiaglc, glucose permeas 89.6 0.17 5.8E-06 45.0 2.7 58 97-159 21-117 (162)
102 3fpp_A Macrolide-specific effl 89.6 0.22 7.7E-06 48.4 3.9 42 117-160 24-65 (341)
103 1y8o_B Dihydrolipoyllysine-res 89.3 0.41 1.4E-05 40.8 4.8 30 132-162 40-69 (128)
104 2qj8_A MLR6093 protein; struct 88.8 0.38 1.3E-05 47.2 4.9 58 99-159 267-328 (332)
105 1pmr_A Dihydrolipoyl succinylt 87.1 0.11 3.8E-06 40.0 -0.1 30 131-161 14-43 (80)
106 1iyu_A E2P, dihydrolipoamide a 86.7 0.76 2.6E-05 35.0 4.5 27 133-161 13-39 (79)
107 3ne5_B Cation efflux system pr 86.6 0.55 1.9E-05 47.4 4.7 54 107-161 102-157 (413)
108 1vf7_A Multidrug resistance pr 86.6 0.34 1.2E-05 48.0 3.1 41 118-160 37-77 (369)
109 3n6r_A Propionyl-COA carboxyla 85.5 0.68 2.3E-05 50.0 5.0 36 125-161 612-647 (681)
110 2xha_A NUSG, transcription ant 84.9 0.42 1.4E-05 43.6 2.5 34 100-139 21-54 (193)
111 4dk0_A Putative MACA; alpha-ha 82.8 0.29 9.8E-06 48.1 0.5 42 117-160 25-66 (369)
112 3hbl_A Pyruvate carboxylase; T 80.2 1.4 4.7E-05 50.5 4.9 37 125-162 1077-1113(1150)
113 3bg3_A Pyruvate carboxylase, m 80.1 1.1 3.8E-05 48.7 3.9 36 125-161 649-684 (718)
114 3va7_A KLLA0E08119P; carboxyla 79.9 1.3 4.5E-05 51.1 4.6 36 126-162 1168-1203(1236)
115 2xha_A NUSG, transcription ant 79.1 1.5 5.1E-05 40.0 3.8 46 103-155 84-157 (193)
116 2xhc_A Transcription antitermi 76.6 1.3 4.3E-05 44.2 2.8 34 100-139 61-94 (352)
117 3our_B EIIA, phosphotransferas 76.5 2.3 7.8E-05 38.4 4.2 20 139-159 120-139 (183)
118 3u9t_A MCC alpha, methylcroton 74.5 0.63 2.1E-05 50.2 0.0 36 125-161 602-637 (675)
119 2qf7_A Pyruvate carboxylase pr 73.3 2.4 8.1E-05 48.7 4.3 36 125-161 1095-1130(1165)
120 3d4r_A Domain of unknown funct 70.2 2.8 9.7E-05 37.1 3.2 45 96-140 108-153 (169)
121 2auk_A DNA-directed RNA polyme 66.5 3.3 0.00011 37.4 3.0 44 100-145 62-105 (190)
122 1zy8_K Pyruvate dehydrogenase 65.0 1.3 4.5E-05 41.3 0.0 30 132-162 16-45 (229)
123 3fmc_A Putative succinylglutam 59.2 7.6 0.00026 38.6 4.3 33 125-159 290-322 (368)
124 1brw_A PYNP, protein (pyrimidi 56.5 13 0.00044 37.9 5.5 43 119-162 329-402 (433)
125 2dsj_A Pyrimidine-nucleoside ( 56.4 10 0.00035 38.6 4.7 42 119-162 322-394 (423)
126 3na6_A Succinylglutamate desuc 55.5 9 0.00031 37.4 4.1 34 125-160 257-290 (331)
127 2bco_A Succinylglutamate desuc 51.1 9.1 0.00031 37.6 3.3 51 102-160 279-329 (350)
128 3h5q_A PYNP, pyrimidine-nucleo 49.9 14 0.00048 37.6 4.6 38 120-158 333-401 (436)
129 2tpt_A Thymidine phosphorylase 49.3 10 0.00035 38.7 3.5 43 119-162 334-407 (440)
130 3lu0_D DNA-directed RNA polyme 49.2 8.8 0.0003 44.3 3.2 37 100-138 1001-1037(1407)
131 2xhc_A Transcription antitermi 49.2 5.8 0.0002 39.4 1.5 46 103-155 124-197 (352)
132 1uou_A Thymidine phosphorylase 43.1 24 0.00082 36.4 5.0 43 119-162 366-437 (474)
133 3cdx_A Succinylglutamatedesucc 38.9 27 0.00092 34.2 4.6 36 123-160 265-300 (354)
134 2gpr_A Glucose-permease IIA co 38.4 16 0.00055 31.8 2.5 28 96-123 87-114 (154)
135 3it5_A Protease LASA; metallop 36.2 34 0.0012 30.4 4.4 23 136-159 82-104 (182)
136 2cu1_A Mitogen-activated prote 36.1 8.8 0.0003 31.2 0.4 21 388-408 19-39 (103)
137 1baz_A ARC repressor; transcri 31.6 90 0.0031 21.8 5.1 36 304-341 17-52 (53)
138 1zko_A Glycine cleavage system 27.7 40 0.0014 28.6 3.2 34 128-162 39-73 (136)
139 2jrh_A Mitogen-activated prote 26.6 16 0.00054 29.0 0.4 20 388-407 15-34 (94)
140 1hpc_A H protein of the glycin 25.5 43 0.0015 28.2 3.0 34 128-162 30-64 (131)
141 2qj8_A MLR6093 protein; struct 23.1 67 0.0023 30.9 4.2 34 125-160 257-290 (332)
142 2c60_A Human mitogen-activated 22.9 21 0.0007 29.1 0.4 20 388-407 42-61 (111)
143 1ax3_A Iiaglc, glucose permeas 22.8 59 0.002 28.4 3.4 28 96-123 92-119 (162)
144 3qoq_A Alginate and motility r 22.1 1E+02 0.0035 23.1 4.1 30 305-336 30-59 (69)
145 4etm_A LMPTP, low molecular we 22.1 57 0.0019 28.6 3.2 32 223-259 68-99 (173)
146 3our_B EIIA, phosphotransferas 22.0 15 0.00051 33.1 -0.7 28 96-123 114-141 (183)
147 1onl_A Glycine cleavage system 21.8 62 0.0021 27.1 3.2 33 129-162 31-64 (128)
148 3a7l_A H-protein, glycine clea 21.4 63 0.0022 27.0 3.2 33 129-162 32-65 (128)
149 2tpt_A Thymidine phosphorylase 20.8 34 0.0012 34.8 1.6 30 93-122 376-405 (440)
150 2npt_B Mitogen-activated prote 20.6 24 0.00084 28.3 0.4 21 388-408 31-51 (100)
151 3h5q_A PYNP, pyrimidine-nucleo 20.5 33 0.0011 34.9 1.4 28 93-120 374-401 (436)
152 1nla_A Transcriptional repress 20.3 1.5E+02 0.0051 21.8 4.6 34 303-338 16-49 (64)
153 2l17_A Synarsc, arsenate reduc 20.2 66 0.0023 26.7 3.1 32 223-259 45-76 (134)
154 2dsj_A Pyrimidine-nucleoside ( 20.2 33 0.0011 34.7 1.4 30 93-122 363-392 (423)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=8.2e-60 Score=486.81 Aligned_cols=311 Identities=30% Similarity=0.493 Sum_probs=38.9
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..|+||+||++|++|+|.+|++++||.|++||.||+|||||++++|+||++|+|.++++++|+ .|.+|++|++|+.+++
T Consensus 3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~-~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT-VATVGQTLITLDAPGY 81 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCC-EeCCCCEEEEEecCCc
Confidence 358999999999999999999999999999999999999999999999999999999999999 8999999999987654
Q ss_pred chhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCcc
Q psy16142 163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIG 242 (426)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v~ 242 (426)
+....... ....++. .+.+...+.+.+. +...+.. +..........++++||+||+||+|+||||++|
T Consensus 82 ~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v- 149 (428)
T 3dva_I 82 ENMTFKGQ---EQEEAKK---EEKTETVSKEEKV--DAVAPNA---PAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLV- 149 (428)
T ss_dssp ---------------------------------------------------------CCCCCHHHHHHHHHTTCCGGGS-
T ss_pred cccccccc---ccccccc---CCCcccCCccccc--cCCCccc---cccccccccccccccCHHHHHHHHHcCCCHHHC-
Confidence 33211000 0000000 0000000000000 0000000 000000112346789999999999999999999
Q ss_pred CCCCCCCcccchhhhhhhhcCCCCC--C---C---CCCCC---CCCCCceeecCCchhhHHHHHHHhhHHH---------
Q psy16142 243 AGSGLFGSITSADLSKASKAGAVAA--P---S---KSAKP---TANGPFTDLPVSGVRGVIAKRLLQSKQV--------- 302 (426)
Q Consensus 243 ~gtG~~GrI~~~DV~~~~~~~~~~~--~---~---~~~~~---~~~~~~~~~~ls~~Rk~iA~~m~~S~~~--------- 302 (426)
+|||++|||+++||+++........ . . .+..+ .....++++||++|||+||++|++||++
T Consensus 150 ~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~e 229 (428)
T 3dva_I 150 QGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDE 229 (428)
T ss_dssp CCCSTTSCCCTTTTTTTSCC------------------------------------------------------------
T ss_pred CCCCCCCceeHHHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEE
Confidence 9999999999999999753211000 0 0 00000 0112357899999999999999999977
Q ss_pred ------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceeeC--CceEEcCCCcEEEEeecCCceEeecccC
Q psy16142 303 ------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVDVSVAVNTDKGLFTPIVFD 374 (426)
Q Consensus 303 ------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~--~~i~~~~~v~i~iAv~~~~GL~~pvi~~ 374 (426)
+++|+++++..++.|.|+||++||+||+++||++||+||++|++ +.|++|++|||||||++++||++|||+|
T Consensus 230 vDvt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~ 309 (428)
T 3dva_I 230 ADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKH 309 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeHHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeecc
Confidence 78899888766677999999999999999999999999999988 7899999999999999999999999999
Q ss_pred cCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 375 ADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 375 a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
++++||.+|++ ++++|++|||+|+|+++||+|
T Consensus 310 a~~~sl~eia~-------------------~~~~l~~~ar~gkL~~~e~~g 341 (428)
T 3dva_I 310 ADRKPIFALAQ-------------------EINELAEKARDGKLTPGEMKG 341 (428)
T ss_dssp ---------------------------------------------------
T ss_pred CCCCCHHHHHH-------------------HHHHHHHHHHcCCCCccccCC
Confidence 99999999999 999999999999999999987
No 2
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=99.96 E-value=1.4e-29 Score=244.68 Aligned_cols=129 Identities=32% Similarity=0.553 Sum_probs=122.4
Q ss_pred CCceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHhhhccccc
Q psy16142 278 GPFTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEK-RGAKLSINDFIIKATALASRRVPEAN 341 (426)
Q Consensus 278 ~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~-~~~~~s~~~~~~ka~~~al~~~p~~n 341 (426)
..++++||++|||+||++|++||++ +++|+++|+.+.+ .|.|+|+++||+||+++||++||+||
T Consensus 16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N 95 (256)
T 3mae_A 16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN 95 (256)
T ss_dssp CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence 4568899999999999999999987 8899999876543 58999999999999999999999999
Q ss_pred ceeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcc
Q psy16142 342 SSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH 421 (426)
Q Consensus 342 ~~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~ 421 (426)
++|+++.|++|++|||||||++++||+||||+|+|++|+.+|++ ++++|++|||+|+|+++
T Consensus 96 a~~~~~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~-------------------~i~~l~~~Ar~gkL~~~ 156 (256)
T 3mae_A 96 STWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAR-------------------EISELAGKARNGKLSQA 156 (256)
T ss_dssp EEEETTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHH-------------------HHHHHHHHHHTTCCCHH
T ss_pred hEEecCEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHH-------------------HHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999999999999999999 99999999999999999
Q ss_pred cccC
Q psy16142 422 EFQV 425 (426)
Q Consensus 422 e~~~ 425 (426)
||+|
T Consensus 157 e~~g 160 (256)
T 3mae_A 157 DMEG 160 (256)
T ss_dssp HHSC
T ss_pred hcCC
Confidence 9987
No 3
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=99.96 E-value=8.7e-29 Score=235.01 Aligned_cols=125 Identities=26% Similarity=0.434 Sum_probs=116.2
Q ss_pred CCceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccc
Q psy16142 278 GPFTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANS 342 (426)
Q Consensus 278 ~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~ 342 (426)
+..+++||++|||+||++|++||++ +++|+++++ .|.|+|+++|++||+++||++||+||+
T Consensus 4 ~~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~----~g~kls~~~~~ikA~~~Al~~~P~~N~ 79 (224)
T 3rqc_A 4 GREEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKA----RNRKVTVTGFLARIVPSILKQYPYLNA 79 (224)
T ss_dssp --CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTT----TTCCCCHHHHHHHHHHHHHHHSGGGSB
T ss_pred CCceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHHHhCHHhhe
Confidence 3457789999999999999999988 677777653 388999999999999999999999999
Q ss_pred eeeCC--ceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCc
Q psy16142 343 SWQDT--FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQP 420 (426)
Q Consensus 343 ~~~~~--~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~ 420 (426)
+|+++ .|++|++||||+||++++||+||||+|+|++|+.+|++ ++++|+++||+|+|++
T Consensus 80 ~~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~-------------------~~~~l~~~ar~~~L~~ 140 (224)
T 3rqc_A 80 IYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISA-------------------EISDKASRARENKLQL 140 (224)
T ss_dssp BCCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHH-------------------HHHHHHHHHTTTCCCG
T ss_pred EEeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHH-------------------HHHHHHHHHHcCCCCc
Confidence 99987 89999999999999999999999999999999999999 9999999999999999
Q ss_pred ccccC
Q psy16142 421 HEFQV 425 (426)
Q Consensus 421 ~e~~~ 425 (426)
+||+|
T Consensus 141 ~e~~g 145 (224)
T 3rqc_A 141 DEVQD 145 (224)
T ss_dssp GGSCC
T ss_pred cccCC
Confidence 99987
No 4
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=99.95 E-value=1.5e-28 Score=236.13 Aligned_cols=128 Identities=27% Similarity=0.391 Sum_probs=121.0
Q ss_pred CceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccce
Q psy16142 279 PFTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSS 343 (426)
Q Consensus 279 ~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~ 343 (426)
.++.+||++|||.||++|.+||++ +++|+++++..++.|.++|+++|++||+++||++||+||++
T Consensus 14 ~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 93 (243)
T 1dpb_A 14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSS 93 (243)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred CceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence 456789999999999999999987 88899888766677899999999999999999999999999
Q ss_pred eeCC--ceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcc
Q psy16142 344 WQDT--FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH 421 (426)
Q Consensus 344 ~~~~--~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~ 421 (426)
|+++ .|++|++|||||||++++||+||||+|+|++|+.+|++ ++++|++|||+|+|+++
T Consensus 94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~-------------------~~~~l~~~ar~~kL~~~ 154 (243)
T 1dpb_A 94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAA-------------------EAAELAEKARSKKLGAD 154 (243)
T ss_dssp ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHH-------------------HHHHHHHHHHTTCCCGG
T ss_pred EecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHH-------------------HHHHHHHHHHcCCCCcc
Confidence 9864 89999999999999999999999999999999999999 99999999999999999
Q ss_pred cccC
Q psy16142 422 EFQV 425 (426)
Q Consensus 422 e~~~ 425 (426)
||+|
T Consensus 155 e~~g 158 (243)
T 1dpb_A 155 AMQG 158 (243)
T ss_dssp GGSC
T ss_pred ccCC
Confidence 9987
No 5
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=99.95 E-value=2.1e-28 Score=234.54 Aligned_cols=128 Identities=64% Similarity=0.942 Sum_probs=120.2
Q ss_pred CCceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccc
Q psy16142 278 GPFTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANS 342 (426)
Q Consensus 278 ~~~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~ 342 (426)
+.++++||++|||+||++|++||++ +++|+++++..+. +.++|+++|++||+++||++||+||+
T Consensus 10 ~~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~-~~kls~~~~~ikAv~~Al~~~P~~Na 88 (239)
T 3b8k_A 10 GVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG-RSKISVNDFIIKASALACLKVPEANS 88 (239)
T ss_dssp CSCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTT-SSCCCHHHHHHHHHHHHHHHCCCSCT
T ss_pred CCceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhc-cCCCCHHHHHHHHHHHHHHhChHhhE
Confidence 4467889999999999999999988 8899998875443 36999999999999999999999999
Q ss_pred eeeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCccc
Q psy16142 343 SWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHE 422 (426)
Q Consensus 343 ~~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e 422 (426)
+|+++.|++|++||||+||++++||++|||+|+|++|+.+|++ ++++|++|||+|+|+++|
T Consensus 89 ~~~~~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~-------------------~~~~l~~~ar~~kL~~~e 149 (239)
T 3b8k_A 89 SWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIAN-------------------DVVSLATKAREGKLQPHE 149 (239)
T ss_dssp TSCCCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHH-------------------HHHHHHHHHHTTCCCGGG
T ss_pred EEECCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHH-------------------HHHHHHHHHHcCCCCccc
Confidence 9999999999999999999999999999999999999999999 999999999999999999
Q ss_pred ccC
Q psy16142 423 FQV 425 (426)
Q Consensus 423 ~~~ 425 (426)
|+|
T Consensus 150 ~~g 152 (239)
T 3b8k_A 150 FQG 152 (239)
T ss_dssp GCC
T ss_pred cCC
Confidence 987
No 6
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=99.95 E-value=2.2e-28 Score=235.61 Aligned_cols=121 Identities=25% Similarity=0.455 Sum_probs=113.7
Q ss_pred eeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccceee
Q psy16142 281 TDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQ 345 (426)
Q Consensus 281 ~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~ 345 (426)
++ ||++|||+||++|++||++ +++|++++ +.|.|+|+++||+||+++||++||+||++|+
T Consensus 16 ~r-pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k----~~~~kls~~~~iikAva~AL~~~P~~Na~~~ 90 (250)
T 3l60_A 16 VR-PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFV----SAAPEITPFALTLRLLVIALKHNVILNSTWV 90 (250)
T ss_dssp CC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHT----TTCTTCCHHHHHHHHHHHHHHHCGGGSEEEE
T ss_pred CC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHHHHhCHHhhEEEe
Confidence 44 9999999999999999988 77777765 3588999999999999999999999999998
Q ss_pred C----CceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcc
Q psy16142 346 D----TFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH 421 (426)
Q Consensus 346 ~----~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~ 421 (426)
+ +.|++|++|||||||++++||+||||+|+|+||+.+|++ ++++|++|||+|||+++
T Consensus 91 ~~~~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~-------------------~i~~l~~~Ar~gkL~~~ 151 (250)
T 3l60_A 91 DSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELAS-------------------RVAELITGAREGTLTPA 151 (250)
T ss_dssp CTTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHH-------------------HHHHHHHHHHHTCCCGG
T ss_pred ccCCCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHH-------------------HHHHHHHHHHcCCCChh
Confidence 5 389999999999999999999999999999999999999 99999999999999999
Q ss_pred cccC
Q psy16142 422 EFQV 425 (426)
Q Consensus 422 e~~~ 425 (426)
||+|
T Consensus 152 e~~g 155 (250)
T 3l60_A 152 ELRG 155 (250)
T ss_dssp GGSC
T ss_pred hcCC
Confidence 9997
No 7
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=99.95 E-value=1.2e-28 Score=235.47 Aligned_cols=127 Identities=35% Similarity=0.558 Sum_probs=119.9
Q ss_pred ceeecCCchhhHHHHHHHhhHHH---------------HHHHHHHHHHHH-HhCCcccHHHHHHHHHHHHhhhcccccce
Q psy16142 280 FTDLPVSGVRGVIAKRLLQSKQV---------------IKLREQMNKALE-KRGAKLSINDFIIKATALASRRVPEANSS 343 (426)
Q Consensus 280 ~~~~~ls~~Rk~iA~~m~~S~~~---------------~~lr~~~~~~~~-~~~~~~s~~~~~~ka~~~al~~~p~~n~~ 343 (426)
.+++||++|||+||++|++||++ +++|+++++.+. +.|.++|+++|++||+++||++||+||++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 35679999999999999999986 888998887543 46899999999999999999999999999
Q ss_pred eeCCceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccc
Q psy16142 344 WQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEF 423 (426)
Q Consensus 344 ~~~~~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~ 423 (426)
|+++.|++|++|||||||++++||+||||+||+++|+.+|++ ++++|++|||+|+|+++||
T Consensus 84 ~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~-------------------~~~~l~~~ar~~kL~~~e~ 144 (233)
T 1scz_A 84 IDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEK-------------------KIKELAVKGRDGKLTVEDL 144 (233)
T ss_dssp EETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHH-------------------HHHHHHHHTTTTCCCHHHH
T ss_pred EeCCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHH-------------------HHHHHHHHHHcCCCCcccc
Confidence 999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cC
Q psy16142 424 QV 425 (426)
Q Consensus 424 ~~ 425 (426)
+|
T Consensus 145 ~g 146 (233)
T 1scz_A 145 TG 146 (233)
T ss_dssp SC
T ss_pred CC
Confidence 87
No 8
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=99.95 E-value=3.6e-28 Score=235.74 Aligned_cols=129 Identities=26% Similarity=0.419 Sum_probs=120.6
Q ss_pred CCceeecCCchhhHHHHHHHhhHHH--------------HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcccccce
Q psy16142 278 GPFTDLPVSGVRGVIAKRLLQSKQV--------------IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSS 343 (426)
Q Consensus 278 ~~~~~~~ls~~Rk~iA~~m~~S~~~--------------~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n~~ 343 (426)
..++++||++|||+||++|++|++. +++|+++|+..++.|.++|+++||+||+++||++||+||++
T Consensus 29 ~~~~~~p~~~~rk~ia~~m~~S~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~ 108 (262)
T 2ii3_A 29 GKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNAS 108 (262)
T ss_dssp CCCEEEECCGGGHHHHHHHHHGGGSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEE
T ss_pred CCcceecCCHHHHHHHHHHHHhhhCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEE
Confidence 3467889999999999999999744 88999998766667899999999999999999999999999
Q ss_pred eeCC--ceEEcCCCcEEEEeecCCceEeecccCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcc
Q psy16142 344 WQDT--FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPH 421 (426)
Q Consensus 344 ~~~~--~i~~~~~v~i~iAv~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~ 421 (426)
|+++ .|++|++|||||||++++||+||||+||+++|+.+|++ ++++|++|||+|||+++
T Consensus 109 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~-------------------~~~~l~~~ar~~kL~~~ 169 (262)
T 2ii3_A 109 VDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIAT-------------------ELNRLQKLGSAGQLSTN 169 (262)
T ss_dssp ECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHH-------------------HHHHHHHHHHHTCCCHH
T ss_pred EeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHH-------------------HHHHHHHHHHhCCCCcc
Confidence 9864 89999999999999999999999999999999999999 99999999999999999
Q ss_pred cccC
Q psy16142 422 EFQV 425 (426)
Q Consensus 422 e~~~ 425 (426)
||+|
T Consensus 170 e~~g 173 (262)
T 2ii3_A 170 DLIG 173 (262)
T ss_dssp HHSC
T ss_pred cCCC
Confidence 9987
No 9
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.93 E-value=1.2e-27 Score=227.59 Aligned_cols=163 Identities=36% Similarity=0.558 Sum_probs=36.8
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCcc-ccCCcEEEEEEcCC
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKD-VPIGKLVCIIVENE 161 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~-v~vG~~l~~i~~~~ 161 (426)
..|+||.||++|++|+|.+|++++||.|++||.||+|||||++++|+||++|+|.++++++|+ . |.+|++|++|..++
T Consensus 4 ~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~-~~V~~G~~l~~i~~~~ 82 (229)
T 1zy8_K 4 IKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGS-KNIRLGSLIGLIVEEG 82 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCC-eeecCCCEEEEEeccC
Confidence 468899999999999999999999999999999999999999999999999999999999998 7 99999999997544
Q ss_pred cchhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccChHHHHHHHHcCCCCcCc
Q psy16142 162 SDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSI 241 (426)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gIDl~~v 241 (426)
+........ .... .+.. ...+. .+...+ .+... .+..........+.++||++||||+|+||||++|
T Consensus 83 ~~~~~~~~~-~~~~--~~~~--~~~~~-~~~~~~------~~~~~-~~~~~~~~~~~~~~~asP~vRklAre~gVDL~~V 149 (229)
T 1zy8_K 83 EDWKHVEIP-KDVG--PPPP--VSKPS-EPRPSP------EPQIS-IPVKKEHIPGTLRFRLSPAARNILEKHSLDASQG 149 (229)
T ss_dssp ------------------------------------------------------------CBCHHHHHHHHHTTCCSSSS
T ss_pred ccccccccc-cccc--cccc--cccCC-Cccccc------ccccC-CCcccccccccccccCChHHHHHHHHcCCCcccc
Confidence 321110000 0000 0000 00000 000000 00000 0000000011235678999999999999999999
Q ss_pred cCCCCCCCcccchhhhhhh
Q psy16142 242 GAGSGLFGSITSADLSKAS 260 (426)
Q Consensus 242 ~~gtG~~GrI~~~DV~~~~ 260 (426)
.|||++|||+++||++|.
T Consensus 150 -~GTGp~GRItk~DV~~~~ 167 (229)
T 1zy8_K 150 -TATGPRGIFTKEDALKLV 167 (229)
T ss_dssp -CCCSTTSCBCHHHHHHHH
T ss_pred -CCCCCCCceehHHHHHHH
Confidence 999999999999999974
No 10
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=99.78 E-value=3.6e-19 Score=167.57 Aligned_cols=88 Identities=16% Similarity=0.159 Sum_probs=84.0
Q ss_pred CcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEe-ecCCceEeecccCcCCCCHHHHHhccccccccccC
Q psy16142 318 AKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAV-NTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRP 396 (426)
Q Consensus 318 ~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv-~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~ 396 (426)
.++|+++|++||+++||++||++|++|+++.|++|++||||+|| ++++||++||+++ +.+++.+|++
T Consensus 46 ~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAVf~t~~GL~vpvi~~-~~~~~~~i~~----------- 113 (213)
T 3cla_A 46 SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQETETFSALSCP-YSSDIDQFMV----------- 113 (213)
T ss_dssp SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHH-----------
T ss_pred hCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeEEEEeCCCceEEEEEec-CCCCHHHHHH-----------
Confidence 48999999999999999999999999999999999999999999 9999999999887 5699999999
Q ss_pred cCCccchHHHHHHHHHHHcC-CCCc-ccccC
Q psy16142 397 VKFSEESNDVKTLAAKAKEG-KLQP-HEFQV 425 (426)
Q Consensus 397 ~~~~~~~~~~~~l~~~a~~~-~l~~-~e~~~ 425 (426)
++++|++|||+| +|++ +||+|
T Consensus 114 --------~~~~l~~~ar~~~kL~~~~~~~g 136 (213)
T 3cla_A 114 --------NYLSVMERYKSDTKLFPQGVTPE 136 (213)
T ss_dssp --------HHHHHHHHHTTCCSSSTTSSCCS
T ss_pred --------HHHHHHHHHhhcCCCCCCCCCCC
Confidence 999999999996 9988 88987
No 11
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.78 E-value=1.7e-19 Score=204.13 Aligned_cols=104 Identities=19% Similarity=0.324 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHH-HhCCcccHHHHHHHHHHHHhhhcccccceeeCC----ceEEcCCCcEEEEeecC--Cc---eEeecc
Q psy16142 303 IKLREQMNKALE-KRGAKLSINDFIIKATALASRRVPEANSSWQDT----FIREYHSVDVSVAVNTD--KG---LFTPIV 372 (426)
Q Consensus 303 ~~lr~~~~~~~~-~~~~~~s~~~~~~ka~~~al~~~p~~n~~~~~~----~i~~~~~v~i~iAv~~~--~G---L~~pvi 372 (426)
+++|+++|+.+. +.|.|+|+++||+||+++||++||+||++|+++ .|+++++|||||||+++ +| |+||||
T Consensus 23 ~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~vnigiAV~t~~~~G~~gL~vPvI 102 (1113)
T 2xt6_A 23 IDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGKDGNRSLVVAAI 102 (1113)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSSCCEEEEC-----------CEEEE
T ss_pred HHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCcccEEEEEeccCCCCceeEEeeee
Confidence 778888887654 358999999999999999999999999999854 69999999999999997 56 999999
Q ss_pred cCcCCCCHHHHHhccccccccccCcCCccchHHHHHHHHHHHcCCCCcccccC
Q psy16142 373 FDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQV 425 (426)
Q Consensus 373 ~~a~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~l~~~e~~~ 425 (426)
+||++|||.+|++ ++++|++|||+|||+++||+|
T Consensus 103 ~~a~~~sl~ei~~-------------------~i~~l~~rAr~gkL~~~d~~g 136 (1113)
T 2xt6_A 103 KRCETMRFGQFIA-------------------AYEDIVRRARDGKLTAEDFSG 136 (1113)
T ss_dssp CCGGGCCHHHHHH-------------------HHHHHHHHHTTTCCCGGGTSC
T ss_pred cCCCCCCHHHHHH-------------------HHHHHHHHHhcCCCCccccCC
Confidence 9999999999999 999999999999999999998
No 12
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=99.76 E-value=2e-18 Score=163.17 Aligned_cols=87 Identities=15% Similarity=0.055 Sum_probs=82.2
Q ss_pred CcccHHHHHHHHHHHHhhhcccccceeeCCceEEcCCCcEEEEe-ecCCceEeecccCcCCCCHHHHHhccccccccccC
Q psy16142 318 AKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAV-NTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRP 396 (426)
Q Consensus 318 ~~~s~~~~~~ka~~~al~~~p~~n~~~~~~~i~~~~~v~i~iAv-~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~ 396 (426)
.++|+++|++||+++||++||++|++|+++.|++|++||||+|| ++++||++||++. ..+++.+|++
T Consensus 51 ~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~----------- 118 (219)
T 1q23_A 51 NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLH----------- 118 (219)
T ss_dssp TTCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHH-----------
T ss_pred cCCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEecccCeEEEEEecCCcEEEEEEec-CCCCHHHHHH-----------
Confidence 38999999999999999999999999999999999999999999 9999999999997 5689999999
Q ss_pred cCCccchHHHHHHHHHHHcC-CCCc-ccccC
Q psy16142 397 VKFSEESNDVKTLAAKAKEG-KLQP-HEFQV 425 (426)
Q Consensus 397 ~~~~~~~~~~~~l~~~a~~~-~l~~-~e~~~ 425 (426)
++++|++|||+| +|++ +|+ |
T Consensus 119 --------~~~~l~~~ar~~~kL~~~~~~-g 140 (219)
T 1q23_A 119 --------IYSQDVACYGENLAYFPKGFI-E 140 (219)
T ss_dssp --------HHHHHHHHHTTCCSSSTTCCC-S
T ss_pred --------HHHHHHHHHHccCCCCCcccc-C
Confidence 999999999998 6976 888 6
No 13
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=8.3e-18 Score=158.71 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=82.5
Q ss_pred cccHHHHHHHHHHHHhhhcccccceee-CCceEEcCCCcEEEEe-ecCCceEeecccCcCCCCHHHHHhccccccccccC
Q psy16142 319 KLSINDFIIKATALASRRVPEANSSWQ-DTFIREYHSVDVSVAV-NTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRP 396 (426)
Q Consensus 319 ~~s~~~~~~ka~~~al~~~p~~n~~~~-~~~i~~~~~v~i~iAv-~~~~GL~~pvi~~a~~~~l~~i~~~~~~~~~~~~~ 396 (426)
++|+++|++||+++||++||++|++|+ ++.|++|++||||+|| ++++||++||+.. ..+++.+|++
T Consensus 49 ~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~t~~GL~~pv~~~-~~~~~~~i~~----------- 116 (217)
T 2i9d_A 49 GQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKIKENGKFFTTRFP-YHNDFDTFYQ----------- 116 (217)
T ss_dssp TCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEECSTTSCEEEEEEC-CCSSHHHHHH-----------
T ss_pred CCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEecCCceEeEEEec-CCCCHHHHHH-----------
Confidence 899999999999999999999999999 8899999999999999 9999999999874 5689999999
Q ss_pred cCCccchHHHHHHHHHHHc-CCCCcc------cccC
Q psy16142 397 VKFSEESNDVKTLAAKAKE-GKLQPH------EFQV 425 (426)
Q Consensus 397 ~~~~~~~~~~~~l~~~a~~-~~l~~~------e~~~ 425 (426)
++++|++|||+ |+|+|+ ||+|
T Consensus 117 --------~~~~l~~~ar~~~kL~~~~~~~~~e~~g 144 (217)
T 2i9d_A 117 --------EARLIIDAIPEDGDPYAAENEEVADGDY 144 (217)
T ss_dssp --------HHHHHHHHCCSSCCTTHHHHHHHHHTCC
T ss_pred --------HHHHHHHHHHhcCCCCCccccccccCCC
Confidence 99999999999 599995 8987
No 14
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=127.96 Aligned_cols=87 Identities=62% Similarity=1.069 Sum_probs=78.5
Q ss_pred cCceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 81 GNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 81 ~~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
....+.||.++.++..|+|.+|++++||.|++||.|++||+||+.++|+||++|+|.++++++|++.|.+|++|++|...
T Consensus 6 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~ 85 (108)
T 2dne_A 6 SGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGK 85 (108)
T ss_dssp CCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESC
T ss_pred cceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecC
Confidence 45678999999999999999999999999999999999999999999999999999999999996149999999999876
Q ss_pred Ccchhcc
Q psy16142 161 ESDVAAF 167 (426)
Q Consensus 161 ~~~~~~~ 167 (426)
++....+
T Consensus 86 ~~~~~~~ 92 (108)
T 2dne_A 86 PEDIEAF 92 (108)
T ss_dssp HHHHHHH
T ss_pred ccchhhh
Confidence 5554433
No 15
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=125.78 Aligned_cols=80 Identities=48% Similarity=0.806 Sum_probs=75.5
Q ss_pred CceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccc-cCCcEEEEEEcC
Q psy16142 82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDV-PIGKLVCIIVEN 160 (426)
Q Consensus 82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v-~vG~~l~~i~~~ 160 (426)
...+.||.++.++..|++.+|++++||.|++||.|++||+||+.++|+||++|+|.++++++|+ .| .+|++|++|...
T Consensus 7 ~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~-~Vv~~G~~l~~i~~~ 85 (98)
T 2dnc_A 7 GIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGS-KNIRLGSLIGLIVEE 85 (98)
T ss_dssp CEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTC-CCEESSCEEEEEECT
T ss_pred cEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCC-EEcCCCCEEEEEecC
Confidence 4578999999999999999999999999999999999999999999999999999999999999 88 999999999865
Q ss_pred Cc
Q psy16142 161 ES 162 (426)
Q Consensus 161 ~~ 162 (426)
++
T Consensus 86 ~~ 87 (98)
T 2dnc_A 86 GE 87 (98)
T ss_dssp TS
T ss_pred CC
Confidence 44
No 16
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.57 E-value=3e-15 Score=122.86 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=73.9
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..+.+|.++.++..|++.+|++++||.|++||.|++||+||+.++|+||++|+|.++++++|+ .|.+|++|++|...
T Consensus 5 ~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~-~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 5 VQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDD-IAYVGKPLVDIETE 81 (93)
T ss_dssp EEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSC-EECTTSEEEEEECS
T ss_pred eEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCC-EeCCCCEEEEEecC
Confidence 568899999999999999999999999999999999999999999999999999999999999 89999999999764
No 17
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.57 E-value=4e-15 Score=129.10 Aligned_cols=84 Identities=69% Similarity=1.130 Sum_probs=77.0
Q ss_pred CceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...+.||.++.++..|+|.+|++++||.|++||.|++||+||++++|+||++|+|.++++++|++.|.+|++|++|...+
T Consensus 27 ~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 27 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp EEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred ceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 46789999999999999999999999999999999999999999999999999999999999961499999999998765
Q ss_pred cchh
Q psy16142 162 SDVA 165 (426)
Q Consensus 162 ~~~~ 165 (426)
+...
T Consensus 107 ~~~~ 110 (128)
T 1y8o_B 107 ADIS 110 (128)
T ss_dssp GGGG
T ss_pred cchh
Confidence 5433
No 18
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.57 E-value=3.1e-15 Score=121.01 Aligned_cols=81 Identities=69% Similarity=1.120 Sum_probs=74.9
Q ss_pred CceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 82 ~~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...+.||.++.++..|.+.+|++++||.|++||.|++||+||+.++|+||++|+|.++++++|++.|.+|++|++|...+
T Consensus 5 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 5 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp EEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred ceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 35688999999999999999999999999999999999999999999999999999999999961399999999998654
Q ss_pred c
Q psy16142 162 S 162 (426)
Q Consensus 162 ~ 162 (426)
+
T Consensus 85 ~ 85 (87)
T 3crk_C 85 A 85 (87)
T ss_dssp T
T ss_pred C
Confidence 3
No 19
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.52 E-value=1.4e-14 Score=114.74 Aligned_cols=75 Identities=29% Similarity=0.573 Sum_probs=72.2
Q ss_pred eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
.+.||.++.++..|.+.+|++++||.|++||.|+++|+||+.++|.||++|+|.++++++|+ .|..|++|+.|..
T Consensus 3 ~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 3 DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGD-TVLSGELLGKLTE 77 (79)
T ss_dssp EEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTC-EECTTCEEEEECC
T ss_pred EEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcC-EECCCCEEEEEec
Confidence 57899999999999999999999999999999999999999999999999999999999999 8999999999864
No 20
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.49 E-value=5.3e-15 Score=117.67 Aligned_cols=76 Identities=28% Similarity=0.501 Sum_probs=72.3
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
..+.||.++.++..|++.+|++++||.|++||.|+++|+||+.++|.||++|+|.++++++|+ .|.+|++|++|..
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT-TVTSRQILGRLRE 78 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTC-EECSSSEEEBCCC
T ss_pred cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcC-EECCCCEEEEEec
Confidence 357899999999999999999999999999999999999999999999999999999999999 8999999998854
No 21
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=99.47 E-value=2.8e-15 Score=144.20 Aligned_cols=100 Identities=24% Similarity=0.360 Sum_probs=87.3
Q ss_pred ccccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--ec
Q psy16142 18 WHFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--AL 87 (426)
Q Consensus 18 ~~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~m 87 (426)
.+++|.+|++++++|+.++|+ +||||||||+|++|+++|+|||||||+||+++|++.++|++.++... .+
T Consensus 125 d~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftpIinppq~aIL~vG~i~~~pv~~~g~i~~r~~ 204 (250)
T 3l60_A 125 QDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPT 204 (250)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCCCCCCTTCSEEEEECCCEEEEEEETTEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeEeeeCCCCceEEEecceEEEeEEECCEEEEEEE
Confidence 458999999999999999998 89999999999999999999999999999999999999998776432 34
Q ss_pred cCCCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 88 PALSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 88 P~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
..++.++| |+...+|+..+.+.++.++.|.
T Consensus 205 m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~ 239 (250)
T 3l60_A 205 MTLTCVFDHRVVDGAQVAQFMCELRDLIESPETAL 239 (250)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHT
T ss_pred eEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHh
Confidence 44555544 8899999999999999887765
No 22
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=99.46 E-value=4.9e-15 Score=142.97 Aligned_cols=97 Identities=22% Similarity=0.208 Sum_probs=85.2
Q ss_pred ccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--eccC
Q psy16142 20 FLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALPA 89 (426)
Q Consensus 20 ~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP~ 89 (426)
++|.+|++++++|+.+||+ +||||||||+|++|+++|+|||||||+||+++|++.++|++.++... .+..
T Consensus 132 ~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftpIInppq~aIL~vG~i~~~pv~~~g~i~~r~~m~ 211 (256)
T 3mae_A 132 KSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVN 211 (256)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTCSEEECCCCTTSSEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCccceEcccCCCCceEEEecccEEEEEEECCEEEEeEEEE
Confidence 8999999999999999998 89999999999999999999999999999999999999998766332 3444
Q ss_pred CCCCcc-----cceeeecccccCCccccCcch
Q psy16142 90 LSPTME-----MGTIVSWAKKEGDKLNEGDLL 116 (426)
Q Consensus 90 lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L 116 (426)
++.++| |+.+.+|+..+.+.++.++.+
T Consensus 212 lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~ 243 (256)
T 3mae_A 212 LCLSIDHRILDGLLAGKFLQAIKANVEKISKE 243 (256)
T ss_dssp EEEEEETTTCCHHHHHHHHHHHHHHHHTCCTT
T ss_pred EEEEEccccccHHHHHHHHHHHHHHHhChHHH
Confidence 555544 889999999999999988654
No 23
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.45 E-value=1e-13 Score=109.17 Aligned_cols=74 Identities=35% Similarity=0.568 Sum_probs=71.5
Q ss_pred eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
.+.+|.++.+...|.+.+|++++||.|++||.|+++|++|+..+|.||++|+|.++++++|+ .|..|++|+.|.
T Consensus 3 ~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~ 76 (77)
T 2l5t_A 3 EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQ-VVPVGSTLLQID 76 (77)
T ss_dssp EEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTC-EECSCSEEEEEE
T ss_pred EEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcC-EECCCCEEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999 899999999985
No 24
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=99.44 E-value=9.1e-15 Score=140.16 Aligned_cols=99 Identities=26% Similarity=0.343 Sum_probs=85.3
Q ss_pred cccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--ecc
Q psy16142 19 HFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--ALP 88 (426)
Q Consensus 19 ~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~mP 88 (426)
.+++.+|++++++|+.++|+ +||||||||+|++|+.+|+|||||||+||+++|++.++|++.++... .+.
T Consensus 129 ~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~~tpIin~pq~aIl~vG~~~~~pv~~~g~i~~~~~m 208 (243)
T 1dpb_A 129 QKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLML 208 (243)
T ss_dssp GSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSCCCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceECccCCCCCeEEEccccEEEEEEECCeEEEEEEE
Confidence 37999999999999999998 89999999999999999999999999999999999999998765422 334
Q ss_pred CCCCC-----cccceeeecccccCCccccCcchh
Q psy16142 89 ALSPT-----MEMGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 89 ~lg~s-----~d~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
.++.+ +||+.+.+|+....+.++.++.|+
T Consensus 209 ~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll 242 (243)
T 1dpb_A 209 PLSLSYDCRVINGAAAARFTKRLGDLLADIRAIL 242 (243)
T ss_dssp EEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGG
T ss_pred EEEEEECcccccHHHHHHHHHHHHHHHhCHHhhh
Confidence 45555 458889999999999999876553
No 25
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=99.43 E-value=1.1e-14 Score=141.07 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=85.5
Q ss_pred ccccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccc-cCce--Ee
Q psy16142 18 WHFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVRE-GNDR--VA 86 (426)
Q Consensus 18 ~~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~-~~~~--i~ 86 (426)
..+++.+|++++++|+.++|+ +||||||||+|++|+++|+|||||||+||+++|++.++|++. ++.. ..
T Consensus 143 ~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~~tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~ 222 (262)
T 2ii3_A 143 QIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQ 222 (262)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSCEECCCCTTCCEEEEECCCEEEEEECTTSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccceECccCCCcceEEEcCccEEEEEEecCCcEEEEe
Confidence 447999999999999999998 899999999999999999999999999999999999999885 4422 13
Q ss_pred ccCCCCC-----cccceeeecccccCCccccCcchh
Q psy16142 87 LPALSPT-----MEMGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 87 mP~lg~s-----~d~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
+..++.+ +||+.+.+|+....+.++.++.|+
T Consensus 223 ~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll 258 (262)
T 2ii3_A 223 IMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFML 258 (262)
T ss_dssp EEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHH
T ss_pred eeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHH
Confidence 3445555 458899999999999999887554
No 26
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=99.43 E-value=1.2e-14 Score=138.57 Aligned_cols=100 Identities=22% Similarity=0.270 Sum_probs=86.1
Q ss_pred ccccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--ec
Q psy16142 18 WHFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--AL 87 (426)
Q Consensus 18 ~~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~m 87 (426)
..+++.+|++++++|+.++|+ +||||||||+|++|+.+++|||||||+||+++|++.++|++.++... .+
T Consensus 116 ~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~~tpIin~pq~aIl~vG~~~~~pv~~~g~i~~r~~ 195 (233)
T 1scz_A 116 DTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPM 195 (233)
T ss_dssp GGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCCCCCCCTTCSEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccceEcccCCCCcEEEEccccEEEEEEECCEEEEEEE
Confidence 347999999999999999998 89999999999999999999999999999999999999998765322 33
Q ss_pred cCCCCC-----cccceeeecccccCCccccCcchh
Q psy16142 88 PALSPT-----MEMGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 88 P~lg~s-----~d~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
..++.+ +||+.+.+|+....+.++.++.++
T Consensus 196 m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll 230 (233)
T 1scz_A 196 MYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLL 230 (233)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHH
T ss_pred EEEEEEEcceeechHHHHHHHHHHHHHHhCHHHHh
Confidence 345555 558899999999999999887554
No 27
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.42 E-value=1.3e-13 Score=109.30 Aligned_cols=75 Identities=27% Similarity=0.388 Sum_probs=70.9
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..+.||.++.+ .|.+.+|++++||.|++||.|+++|++|+.++|.||++|+|.++++++|+ .|..|++|+.|...
T Consensus 3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~-~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD-KVKTGSLIMIFEVE 77 (80)
T ss_dssp EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTC-EECTTCCCEEEESC
T ss_pred eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCC-EECCCCEEEEEEcc
Confidence 35789999998 78999999999999999999999999999999999999999999999999 89999999999764
No 28
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.38 E-value=4.4e-13 Score=106.07 Aligned_cols=73 Identities=19% Similarity=0.326 Sum_probs=69.1
Q ss_pred eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.+.||.++.+ + .+.+|++++||.|++||.|+++|++|+.++|.||++|+|.++++++|+ .|..|++|+.|...
T Consensus 3 ~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~-~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 3 IIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGD-KLKEGDAIIELEPA 75 (79)
T ss_dssp EEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTC-EEETTSEEEEEECC
T ss_pred EEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCC-EECCCCEEEEEecC
Confidence 5789999986 6 999999999999999999999999999999999999999999999999 89999999999764
No 29
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=99.36 E-value=1.6e-13 Score=131.21 Aligned_cols=99 Identities=35% Similarity=0.497 Sum_probs=83.3
Q ss_pred cccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccc--cCceE--e
Q psy16142 19 HFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVRE--GNDRV--A 86 (426)
Q Consensus 19 ~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~--~~~~i--~ 86 (426)
.+++.+|++++++|+.++|+ +||||||||+|++|.++|+||+||||++|+++|++.++|++. ++... .
T Consensus 123 ~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ftpiin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~ 202 (239)
T 3b8k_A 123 IKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVAS 202 (239)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSCCCCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeEECcCCCCceEEEECcccEEEEEEEcCCCcEEEEE
Confidence 37999999999999999998 899999999999999999999999999999999999999883 44211 2
Q ss_pred ccCCCCC-----cccceeeecccccCCccccCcchh
Q psy16142 87 LPALSPT-----MEMGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 87 mP~lg~s-----~d~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
+..++.+ +||+.+.+|+....+.++.++.|+
T Consensus 203 ~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll 238 (239)
T 3b8k_A 203 MMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITML 238 (239)
T ss_dssp CEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHH
T ss_pred EEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhh
Confidence 3334444 558899999999999998876543
No 30
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=99.35 E-value=1.1e-13 Score=131.20 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=83.3
Q ss_pred ccccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceEeccC
Q psy16142 18 WHFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPA 89 (426)
Q Consensus 18 ~~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i~mP~ 89 (426)
.++++.+|++++++|+.++|+ +||||||||+|++|+.+|+|||||||++|+++|++.++|+ -....+.+-.
T Consensus 115 ~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~~tpiin~pq~aIl~vG~~~~~p~-r~~m~lsls~ 193 (224)
T 3rqc_A 115 DRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRILEREG-RKYMYLSLSC 193 (224)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSEEECCCCTTBSEEEEECCCEEETT-EEECCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccceEeccCCCCceEEEecccEEECC-ceEEEEEEEe
Confidence 348999999999999999998 8999999999999999999999999999999999998876 1112223334
Q ss_pred CCCCcccceeeecccccCCccccCcchh
Q psy16142 90 LSPTMEMGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 90 lg~s~d~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
-+.-+||+.+.+|+....+.++.++.|+
T Consensus 194 DHRviDGa~aa~Fl~~l~~~le~p~~ll 221 (224)
T 3rqc_A 194 DHRLIDGAVATRFIVDLKKVIEDPNAII 221 (224)
T ss_dssp ETTTSCHHHHHHHHHHHHHHHTCTTTTT
T ss_pred ccceecHHHHHHHHHHHHHHHhCHHHHh
Confidence 4455668999999999999999987664
No 31
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.34 E-value=8.3e-14 Score=143.62 Aligned_cols=100 Identities=24% Similarity=0.353 Sum_probs=0.0
Q ss_pred ccccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhccccccccccccCceE--ec
Q psy16142 18 WHFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRV--AL 87 (426)
Q Consensus 18 ~~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~~~~i--~m 87 (426)
+.++|.+|++++++|+.++|+ +||||||||+|++|.++|+||||+||+||+++|++.++|++.++... .|
T Consensus 311 ~~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~~g~i~~r~~ 390 (428)
T 3dva_I 311 DRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPM 390 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEECCEEEEeee
Confidence 358999999999999999998 89999999999999999999999999999999999999998665432 45
Q ss_pred cCCCCCcc-----cceeeecccccCCccccCcchh
Q psy16142 88 PALSPTME-----MGTIVSWAKKEGDKLNEGDLLA 117 (426)
Q Consensus 88 P~lg~s~d-----~g~i~~w~v~vGd~Ve~gd~L~ 117 (426)
..|++++| |+.+.+|+..+.+.++.+..|+
T Consensus 391 m~lsls~DHRviDG~~aa~Fl~~lk~~Le~P~~ll 425 (428)
T 3dva_I 391 LALSLSFDHRMIDGATAQKALNHIKRLLSDPELLL 425 (428)
T ss_dssp -----------------------------------
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHHhCHHHHh
Confidence 56777766 8899999999999999887654
No 32
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.33 E-value=2.6e-13 Score=107.85 Aligned_cols=76 Identities=25% Similarity=0.398 Sum_probs=70.5
Q ss_pred ceEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 83 DRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 83 ~~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..+.||.++ +...|.+.+|++++||.|++||.|+++|++|+.++|.||++|+|.++++++|+ .|..|++|+.|...
T Consensus 3 ~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 3 VELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGD-KISEGGLIVVVEAE 78 (81)
T ss_dssp EECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSC-EECSSSCCCEECCS
T ss_pred EEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCC-EeCCCCEEEEEEec
Confidence 357899999 66778999999999999999999999999999999999999999999999999 89999999999653
No 33
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.27 E-value=2.3e-12 Score=103.48 Aligned_cols=71 Identities=28% Similarity=0.419 Sum_probs=65.7
Q ss_pred eEeccCCCCCcccceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 84 RVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 84 ~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.+.+|.+ |.+.+|++++||.|++||.|+++|++|+..+|.||++|+|.++++++|+ .|..|++|+.|...+
T Consensus 4 ~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~-~V~~G~~l~~i~~~~ 74 (85)
T 2k7v_A 4 EVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD-KVKTGSLIMIFEVEG 74 (85)
T ss_dssp CCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTC-CBCTTSEEEEEECCS
T ss_pred EEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCC-EECCCCEEEEEEcCC
Confidence 4567765 7999999999999999999999999999999999999999999999999 899999999997643
No 34
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.14 E-value=2e-11 Score=97.99 Aligned_cols=63 Identities=22% Similarity=0.371 Sum_probs=60.0
Q ss_pred cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.|.+.+|++++||.|++||.|++||+||+.++|.||++|+|.+++ ++|+ .|.+|++|+.|...
T Consensus 13 ~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~-~V~~G~~l~~i~~~ 75 (84)
T 2kcc_A 13 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGA-VLEAGCVVARLELD 75 (84)
T ss_dssp SCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTC-CCCTTCCCEEEECS
T ss_pred CEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCC-EECCCCEEEEEeCC
Confidence 388999999999999999999999999999999999999999999 9999 89999999999754
No 35
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.13 E-value=4.5e-11 Score=129.96 Aligned_cols=61 Identities=26% Similarity=0.383 Sum_probs=59.6
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
|++.+|++++||.|++||+|++||+|||+++|+||.+|+|.++++++|+ .|.+|++|++|+
T Consensus 621 G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~-~v~~g~~l~~i~ 681 (681)
T 3n6r_A 621 GLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGN-SLAVDDVIMEFE 681 (681)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTC-EECTTCEEEEEC
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcC-EeCCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999 899999999984
No 36
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.09 E-value=7.1e-11 Score=91.17 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=60.2
Q ss_pred cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
.|.+.+|++++||.|++||.|+++|++|+..+|.||.+|+|.++++++|+ .|..|++|+.|..
T Consensus 7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~-~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 7 AGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGD-FVNEGDVLLELSN 69 (72)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTC-EECTTCEEEEEGG
T ss_pred cEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCC-EECCCCEEEEEeC
Confidence 38899999999999999999999999999999999999999999999999 8999999999864
No 37
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=99.08 E-value=6.4e-11 Score=82.34 Aligned_cols=38 Identities=32% Similarity=0.583 Sum_probs=35.9
Q ss_pred ccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142 222 YASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS 260 (426)
Q Consensus 222 ~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~ 260 (426)
.+||+||++|+|+|||++.| .|||++|||+++||+++.
T Consensus 2 ~asP~ar~la~e~gidl~~v-~gtG~~gri~k~Dv~~~~ 39 (41)
T 2eq9_C 2 LAVPAARKLARELGIPIEEV-PGSGPLGRVRVEDVRAYA 39 (41)
T ss_dssp CBCHHHHHHHHHTTCCGGGS-CCCSTTCCBCHHHHHHHH
T ss_pred CCChHHHHHHHHcCCChhhc-CCCCCCCcccHHHHHHHh
Confidence 57999999999999999999 999999999999999864
No 38
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.06 E-value=7.6e-11 Score=93.22 Aligned_cols=59 Identities=27% Similarity=0.321 Sum_probs=55.8
Q ss_pred eeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 99 IVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 99 i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
+.+|++++||.|++||.|+++|++|+.++|.||++|+|.++++++|+ .|..|++|+.|+
T Consensus 22 ~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~V~~G~~L~~i~ 80 (80)
T 1bdo_A 22 DAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQ-PVEFDEPLVVIE 80 (80)
T ss_dssp TSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTC-EECTTCEEEEEC
T ss_pred CcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCC-EECCCCEEEEEC
Confidence 34689999999999999999999999999999999999999999999 899999999873
No 39
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=99.05 E-value=9e-11 Score=81.13 Aligned_cols=37 Identities=38% Similarity=0.577 Sum_probs=34.7
Q ss_pred cChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142 223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS 260 (426)
Q Consensus 223 asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~ 260 (426)
+||++|++|+++|||++.| .|||++|||+++||+++.
T Consensus 2 asP~ar~la~e~gidl~~v-~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq7_C 2 AMPAAERLMQEKGVSPAEV-QGTGLGGRILKEDVMRHL 38 (40)
T ss_dssp CCHHHHHHHHHTTCCTTTS-CCCSSSSCCCHHHHTTC-
T ss_pred CCcHHHHHHHHhCCChhhc-CCCCCCCcccHHHHHHHh
Confidence 6999999999999999999 999999999999999763
No 40
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=99.05 E-value=6.2e-11 Score=88.57 Aligned_cols=41 Identities=32% Similarity=0.482 Sum_probs=37.4
Q ss_pred CccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142 219 TRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS 260 (426)
Q Consensus 219 ~~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~ 260 (426)
.++.+||+||+||+++||||+.| .|||++|||+++||+++.
T Consensus 6 ~~v~aSPaaRrlA~e~gIdl~~V-~GTG~~GRItk~DV~~~~ 46 (58)
T 3rnm_E 6 RKTLATPAVRNLAMENNIKLSEV-VGSGKDGRILKEDILNYL 46 (58)
T ss_dssp --CCCCHHHHHHHHHTTCCGGGC-CCCSGGGCCCHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHcCCCHHHC-CCCCCCCceeHHHHHHHH
Confidence 45679999999999999999999 999999999999999874
No 41
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=99.04 E-value=9.5e-11 Score=81.02 Aligned_cols=37 Identities=46% Similarity=0.770 Sum_probs=35.2
Q ss_pred cChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142 223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS 260 (426)
Q Consensus 223 asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~ 260 (426)
+||+||++|+++|||++.| .|||++|||+++||+++.
T Consensus 2 asP~ar~la~e~gidl~~v-~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRL-RGTGLAGRITEEDVRRAA 38 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGC-CCCSTTSCCCHHHHHHHH
T ss_pred CChHHHHHHHHhCCChhhc-CCCCCCCceeHHHHHHHh
Confidence 6999999999999999999 999999999999999763
No 42
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.04 E-value=2.5e-11 Score=137.78 Aligned_cols=97 Identities=19% Similarity=0.203 Sum_probs=71.2
Q ss_pred ccccccchhhhHHHHHHHHHh--------cCCcEEEecCcccccccceeeeCCccchhhhcccccccccccc------Cc
Q psy16142 18 WHFLLYLLPWRWEPLLAGLRK--------KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREG------ND 83 (426)
Q Consensus 18 ~~~~l~~i~~e~~~L~~kar~--------~gGtfTIsn~G~~G~~~~tpIInppq~aIlgvg~~~~~p~v~~------~~ 83 (426)
..++|.+|++++++|+.+||+ +||||||||+|++|+.+++|||||||+||+++|++.++|++.+ +.
T Consensus 106 ~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinppq~aIL~vG~i~~~pv~~~~~~~~~g~ 185 (1113)
T 2xt6_A 106 ETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYPAEFQGASEERIAD 185 (1113)
T ss_dssp GGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTTCSEEEEECCCBCCTTSTTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCCCceEEEcCccEEEeEEcCCCcccCCc
Confidence 359999999999999999998 8999999999999999999999999999999999999988754 21
Q ss_pred --eEeccCCCCC-----cccceeeecccccCCccccCc
Q psy16142 84 --RVALPALSPT-----MEMGTIVSWAKKEGDKLNEGD 114 (426)
Q Consensus 84 --~i~mP~lg~s-----~d~g~i~~w~v~vGd~Ve~gd 114 (426)
...+..|+.+ +||+...+|+..+.+.++.++
T Consensus 186 i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~p~ 223 (1113)
T 2xt6_A 186 LGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDD 223 (1113)
T ss_dssp HTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHHTTCHH
T ss_pred eeEeeeeEEEEEECcceechHHHHHHHHHHHHHHhCcH
Confidence 1233345555 558899999999999999865
No 43
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.5e-10 Score=95.83 Aligned_cols=63 Identities=21% Similarity=0.374 Sum_probs=59.9
Q ss_pred cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.|.+.+|++++||.|++||.|+++|+||+..+|.||++|+|. +++++|+ .|..|++|+.|...
T Consensus 25 ~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~-~V~~G~~l~~i~~~ 87 (100)
T 2dn8_A 25 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGA-VLEAGCVVARLELD 87 (100)
T ss_dssp CEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTC-EECSSCEEEEECCS
T ss_pred CEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCC-EECCCCEEEEEEcC
Confidence 389999999999999999999999999999999999999999 9999999 89999999999653
No 44
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.00 E-value=7.3e-11 Score=96.67 Aligned_cols=62 Identities=26% Similarity=0.366 Sum_probs=25.1
Q ss_pred cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
.|.+.+|++++||.|++||.|+++|++|+..+|.||++|+|.++.+++|+ .|..|++|+.|+
T Consensus 33 ~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~-~V~~G~~L~~ie 94 (94)
T 2jku_A 33 PGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGD-TVGEGDLLVELE 94 (94)
T ss_dssp SCEEEEECCCTTCCCCTTCCCEEEEC-------------------------------------
T ss_pred CEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcC-EECCCCEEEEEC
Confidence 58999999999999999999999999999999999999999999999999 899999999873
No 45
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.97 E-value=7.5e-11 Score=128.10 Aligned_cols=63 Identities=24% Similarity=0.356 Sum_probs=0.0
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
|++.+|++++||.|++||+|++||+|||+++|+||.+|+|.++++++|+ .|.+|++|++|+++
T Consensus 611 G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~-~v~~g~~l~~i~~~ 673 (675)
T 3u9t_A 611 GSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGE-LVEEGTPLVELDEN 673 (675)
T ss_dssp ----------------------------------------------------------------
T ss_pred EEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcC-CcCCCCEEEEEecC
Confidence 8999999999999999999999999999999999999999999999999 89999999999753
No 46
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=98.96 E-value=5.5e-10 Score=87.31 Aligned_cols=62 Identities=27% Similarity=0.376 Sum_probs=59.2
Q ss_pred cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
.|.+.+|++++|+.|++||.|++++++|+..+|.||.+|+|.++.+++|+ .|..|++|+.|+
T Consensus 16 ~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~-~v~~G~~l~~i~ 77 (77)
T 1dcz_A 16 AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERD-AVQGGQGLIKIG 77 (77)
T ss_dssp SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTC-BCCBTSEEEEEC
T ss_pred CEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcC-EECCCCEEEEEC
Confidence 38899999999999999999999999999999999999999999999999 899999999873
No 47
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=98.95 E-value=3.1e-10 Score=82.01 Aligned_cols=40 Identities=33% Similarity=0.547 Sum_probs=37.4
Q ss_pred ccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142 220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS 260 (426)
Q Consensus 220 ~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~ 260 (426)
++.+||++|+||+++||||+.| .|||++|||+++||+++.
T Consensus 6 ~~~asP~ar~la~e~gidl~~v-~gtG~~Gri~k~Dv~~~~ 45 (49)
T 1w85_I 6 RVIAMPSVRKYAREKGVDIRLV-QGTGKNGRVLKEDIDAFL 45 (49)
T ss_dssp CCCCCHHHHHHHHHTTCCTTTS-CCCSGGGCCCHHHHHHHH
T ss_pred cccCChHHHHHHHHcCCCcccc-CCCCCCCcccHHHHHHHH
Confidence 4568999999999999999999 999999999999999875
No 48
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=98.95 E-value=6.6e-10 Score=85.93 Aligned_cols=62 Identities=24% Similarity=0.382 Sum_probs=59.1
Q ss_pred cceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
.|.+.+|++++||.|++||.|++++++|+..+|.||.+|+|.++.+++|+ .|..|++|+.|+
T Consensus 13 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~-~v~~g~~l~~i~ 74 (74)
T 2d5d_A 13 PGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGE-AVDTGQPLIELG 74 (74)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTC-EECTTCEEEEEC
T ss_pred CEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcC-EECCCCEEEEEC
Confidence 38899999999999999999999999999999999999999999999999 899999999873
No 49
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=98.95 E-value=3.5e-10 Score=82.41 Aligned_cols=40 Identities=40% Similarity=0.527 Sum_probs=36.9
Q ss_pred ccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142 220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS 260 (426)
Q Consensus 220 ~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~ 260 (426)
...+||++|+||+++||||+.| .|||++|||+++||+++.
T Consensus 9 ~~~asP~aR~lA~e~gidl~~V-~gtG~~GrI~k~DV~~~~ 48 (51)
T 1bal_A 9 NDALSPAIRRLLAEHNLDASAI-KGTGVGGRLTREDVEKHL 48 (51)
T ss_dssp SCCCCGGGTTHHHHTTCCTTSS-CCCSTTSCCCHHHHTTTS
T ss_pred CCCCChHHHHHHHHcCCCcccc-CCCCCCCcccHHHHHHHh
Confidence 3467999999999999999999 999999999999999764
No 50
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=98.91 E-value=8.8e-10 Score=91.01 Aligned_cols=64 Identities=27% Similarity=0.359 Sum_probs=61.1
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
|.+.+|++++||.|++||+|++||++|+..+|.||++|+|.++++++|+ .|..|++|+.|...+
T Consensus 23 G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~-~V~~G~~L~~i~~~~ 86 (99)
T 2ejm_A 23 GTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGA-QANRHTPLVEFEEEE 86 (99)
T ss_dssp EEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTE-EECTTCBCEEECCCC
T ss_pred EEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCC-EECCCCEEEEEECCC
Confidence 8899999999999999999999999999999999999999999999999 899999999997643
No 51
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=98.87 E-value=9.4e-10 Score=126.20 Aligned_cols=60 Identities=32% Similarity=0.385 Sum_probs=59.0
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
|++.+|++++||.|++||.|++||+|||+++|+||++|+|.+|++++|+ .|.+|++|++|
T Consensus 1176 G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~-~V~~G~~l~~i 1235 (1236)
T 3va7_A 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGD-MVEAGDLVAVI 1235 (1236)
T ss_dssp EEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTC-EECTTCEEEEE
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcC-EeCCCCEEEEe
Confidence 8999999999999999999999999999999999999999999999999 89999999987
No 52
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.85 E-value=1.5e-09 Score=123.97 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=60.0
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
|.|.+|++++||.|++||+|++||+|||+++|+||.+|+|.++++++|+ .|.+|++|++|+.+
T Consensus 1086 G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~-~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1086 GSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD-TIATGDLLIEIEKA 1148 (1150)
T ss_dssp EEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTC-EECTTBEEEEEC--
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCC-EeCCCCEEEEEecC
Confidence 8999999999999999999999999999999999999999999999999 89999999999653
No 53
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=98.83 E-value=2.7e-09 Score=82.75 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=37.5
Q ss_pred ccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142 220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS 260 (426)
Q Consensus 220 ~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~ 260 (426)
++.+||+||+||+++||||+.| .|||++|||+++||+++.
T Consensus 15 ~~~aSPaaRklA~e~gidl~~V-~GTG~~GRItk~DV~~~~ 54 (70)
T 2coo_A 15 KTLATPAVRRLAMENNIKLSEV-VGSGKDGRILKEDILNYL 54 (70)
T ss_dssp SCCSCHHHHHHHHHHTCCGGGS-CCCSTTSCCCHHHHHHHH
T ss_pred ccccCcHHHHHHHHhCCCcccc-CCCCCCCceeHHHHHHHH
Confidence 4568999999999999999999 999999999999999874
No 54
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=98.83 E-value=9e-10 Score=83.97 Aligned_cols=40 Identities=30% Similarity=0.331 Sum_probs=37.5
Q ss_pred ccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142 220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS 260 (426)
Q Consensus 220 ~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~ 260 (426)
++.+||+||++|+++||||+.| .|||++|||+++||+++.
T Consensus 9 ~~~asPaaRklA~e~gidl~~V-~GTG~~GRItk~DV~~~~ 48 (64)
T 2f60_K 9 RFRLSPAARNILEKHSLDASQG-TATGPRGIFTKEDALKLV 48 (64)
T ss_dssp HHHBCHHHHHHHHHTTCCGGGS-CCCSGGGCBCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHcCCChhhc-CCCCCCCcccHHHHHHHH
Confidence 4568999999999999999999 999999999999999874
No 55
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=98.81 E-value=1.7e-09 Score=82.00 Aligned_cols=40 Identities=45% Similarity=0.633 Sum_probs=37.5
Q ss_pred ccccChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhhh
Q psy16142 220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKAS 260 (426)
Q Consensus 220 ~~~asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~~ 260 (426)
+..+||++|+||+++||||+.| .|||++|||+++||+++.
T Consensus 4 ~~~asPaaRklA~e~gidl~~V-~gtG~~GrItk~DV~~~~ 43 (62)
T 1w4i_A 4 EVAAMPAARRLAKELGIDLSKV-KGTGPGGVITVEDVKRYA 43 (62)
T ss_dssp SSEECHHHHHHHHHHTCCGGGS-CCCSTTSEECHHHHHHHH
T ss_pred cccCChHHHHHHHHhCCChhhc-CCCCCCCcccHHHHHHHH
Confidence 3568999999999999999999 999999999999999974
No 56
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.51 E-value=1.6e-08 Score=110.05 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=58.6
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i 157 (426)
|++.+|++++||.|++||+|++||+|||+++|.||.+|+|.++++++|+ .|..|++|++|
T Consensus 658 G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~-~V~~G~~L~~i 717 (718)
T 3bg3_A 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDM-TLEGDDLILEI 717 (718)
T ss_dssp EEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEE-EECSSCEEECB
T ss_pred eEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCC-EeCCCCEEEEe
Confidence 8999999999999999999999999999999999999999999999999 89999999876
No 57
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.48 E-value=7.6e-08 Score=84.04 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=53.1
Q ss_pred cccCCccccCcchhhhhcccccceeecCCCeEEEEE---eecCCCcccc---CCc-EEEEEEcCC
Q psy16142 104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKI---LVPAGSKDVP---IGK-LVCIIVENE 161 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i---~v~~G~~~v~---vG~-~l~~i~~~~ 161 (426)
.++|+.|++||.|++||+||+.++|.||.+|+|.++ +++.|+ .|. .|+ .|+.|...+
T Consensus 53 p~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~-~Vn~dp~g~GwL~~i~~~~ 116 (136)
T 1zko_A 53 PEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPE-LINKDPEGEGWLFKMEISD 116 (136)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTT-HHHHCTTTTTCCEEEEESC
T ss_pred cCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCcc-CcccCCCCCeEEEEEEECC
Confidence 499999999999999999999999999999999999 889998 898 898 999998654
No 58
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.46 E-value=4.1e-08 Score=112.39 Aligned_cols=61 Identities=28% Similarity=0.460 Sum_probs=52.9
Q ss_pred ceeeecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEE
Q psy16142 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~ 158 (426)
|++.+|++++||.|++||+|++||+|||+++|.||.+|+|.++++++|+ .|..|++|++|+
T Consensus 1104 G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~-~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGD-QIDAKDLLAVYG 1164 (1165)
T ss_dssp EEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSC-EECTTBEEEEC-
T ss_pred eEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEec
Confidence 8999999999999999999999999999999999999999999999999 899999999874
No 59
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.35 E-value=1.8e-07 Score=78.81 Aligned_cols=67 Identities=28% Similarity=0.366 Sum_probs=60.6
Q ss_pred cceeeecccccCCccccCcchhhhhcccccc-----------------------------eeecCCCeEEEEEeecCCCc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATM-----------------------------GFETPEEGYLAKILVPAGSK 146 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~-----------------------------ei~a~~~G~v~~i~v~~G~~ 146 (426)
.|.|.+|++++||.|++||+|+++++.++.. .|.||.+|+|.++.+++|+
T Consensus 9 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~- 87 (116)
T 2k32_A 9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD- 87 (116)
T ss_dssp CEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC-
T ss_pred CEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC-
Confidence 4899999999999999999999999886664 8999999999999999999
Q ss_pred cccCC-cEEEEEEcCCcc
Q psy16142 147 DVPIG-KLVCIIVENESD 163 (426)
Q Consensus 147 ~v~vG-~~l~~i~~~~~~ 163 (426)
.|..| ++|+.|...+.-
T Consensus 88 ~v~~g~~~l~~i~~~~~~ 105 (116)
T 2k32_A 88 YVSASTTELVRVTNLNPI 105 (116)
T ss_dssp EECTTTSCCEEEECSCTH
T ss_pred EEcCCCcEEEEEECCCeE
Confidence 89999 999999876543
No 60
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=98.24 E-value=1.2e-07 Score=89.23 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=68.7
Q ss_pred ccccccccchhhhHHHHHHHHHh---------cCCcEEEecCcccccccceeeeCCcc------chhhhccccccccccc
Q psy16142 16 AEWHFLLYLLPWRWEPLLAGLRK---------KGGTVSISNLGMFGIKNFSAIINPPQ------ACILAVGSLSQRLVRE 80 (426)
Q Consensus 16 ~~~~~~l~~i~~e~~~L~~kar~---------~gGtfTIsn~G~~G~~~~tpIInppq------~aIlgvg~~~~~p~v~ 80 (426)
..+..++.+|.+++++|+.+||+ .||||||||+|++ .|++++++|+ ++|+++|++.++
T Consensus 107 ~~~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~ggtftISnlG~~---~ft~i~~~~~~~~~~~~pIi~~G~~~~~---- 179 (219)
T 1q23_A 107 SEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWV---SFTSFDLNVANMDNFFAPVFTMGKYYTQ---- 179 (219)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTTC---CCSEEEEEESCCTTCCSCEEEECCCEEE----
T ss_pred ecCCCCHHHHHHHHHHHHHHHHccCCCCCccccCCEEEEEcCccc---cccccccCCCCCccceeEEEecccEEEE----
Confidence 34567999999999999999997 2799999999997 5677777776 599999998765
Q ss_pred cCc---eEeccCCCCCcccceeeecccccCCccccC
Q psy16142 81 GND---RVALPALSPTMEMGTIVSWAKKEGDKLNEG 113 (426)
Q Consensus 81 ~~~---~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~g 113 (426)
++. .+.+-.-+.-+||+.+.+|+....+.++.+
T Consensus 180 ~~r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~ 215 (219)
T 1q23_A 180 GDKVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEW 215 (219)
T ss_dssp TTEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCc
Confidence 221 122223344455888899998888877764
No 61
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=97.89 E-value=6.9e-06 Score=70.91 Aligned_cols=57 Identities=18% Similarity=0.334 Sum_probs=48.4
Q ss_pred cccCCccccCcchhhhhcccccceeecCCCeEEEEEeec---CCCccc---cCCc-EEEEEEcCC
Q psy16142 104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVP---AGSKDV---PIGK-LVCIIVENE 161 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~---~G~~~v---~vG~-~l~~i~~~~ 161 (426)
.++|+.|++||.+|+||+||+.++|.||.+|+|.+++.. ..+ .| +.|+ -|+.|...+
T Consensus 44 p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~-lvn~dpy~~gWl~~i~~~~ 107 (128)
T 1onl_A 44 PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPE-LVNQDPYGEGWIFRLKPRD 107 (128)
T ss_dssp BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTT-HHHHCTTTTTCCEEEEESC
T ss_pred cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChh-hhccCCCCCccEEEEEECC
Confidence 499999999999999999999999999999999999754 444 45 6676 888887543
No 62
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=97.84 E-value=3.4e-06 Score=73.12 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=46.5
Q ss_pred cccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCc--ccc---CCc-EEEEEEcC
Q psy16142 104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSK--DVP---IGK-LVCIIVEN 160 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~--~v~---vG~-~l~~i~~~ 160 (426)
.++|+.|++||.+++||+||+.++|.||.+|+|.+++.+.++. .|. .|+ -|+.|...
T Consensus 44 p~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~~ 106 (131)
T 1hpc_A 44 PEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPT 106 (131)
T ss_dssp CCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEES
T ss_pred cCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEEEEC
Confidence 4999999999999999999999999999999999997554430 342 455 77777654
No 63
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=97.79 E-value=8.8e-06 Score=70.24 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=46.5
Q ss_pred cccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCc--ccc---CCc-EEEEEEcC
Q psy16142 104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSK--DVP---IGK-LVCIIVEN 160 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~--~v~---vG~-~l~~i~~~ 160 (426)
.++|+.|++||.+|+||+||+.++|.||.+|+|.+++...++. .|. .|+ -|+.|...
T Consensus 45 p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~ 107 (128)
T 3a7l_A 45 PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKAS 107 (128)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEES
T ss_pred cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEEC
Confidence 4899999999999999999999999999999999997654431 344 555 77777654
No 64
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=97.71 E-value=5.7e-06 Score=77.40 Aligned_cols=93 Identities=10% Similarity=0.131 Sum_probs=62.7
Q ss_pred ccccccccchhhhHHHHHHHHHh----------cCCcEEEecCcccccccceeeeCCc---cchhhhccccccccccccC
Q psy16142 16 AEWHFLLYLLPWRWEPLLAGLRK----------KGGTVSISNLGMFGIKNFSAIINPP---QACILAVGSLSQRLVREGN 82 (426)
Q Consensus 16 ~~~~~~l~~i~~e~~~L~~kar~----------~gGtfTIsn~G~~G~~~~tpIInpp---q~aIlgvg~~~~~p~v~~~ 82 (426)
..+..++.+|++++++|+.+||+ +||||||||+|+++.+.++.-.+.+ ..+|+++|++.+. ++
T Consensus 102 ~~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~~~PIi~~G~~~~~----~~ 177 (213)
T 3cla_A 102 CPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAKYQQE----GD 177 (213)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTCCSCEEEEECCEEE----TT
T ss_pred ecCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcccccEEEeeEEEEE----CC
Confidence 34568999999999999999997 6899999999887533332111111 1367778888654 22
Q ss_pred c---eEeccCCCCCcccceeeecccccCCcccc
Q psy16142 83 D---RVALPALSPTMEMGTIVSWAKKEGDKLNE 112 (426)
Q Consensus 83 ~---~i~mP~lg~s~d~g~i~~w~v~vGd~Ve~ 112 (426)
. .+.+..-+.-+||+.+.+|+....+.++.
T Consensus 178 ~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~ 210 (213)
T 3cla_A 178 RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS 210 (213)
T ss_dssp EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence 1 11222334445588888998888877764
No 65
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=97.21 E-value=4.6e-05 Score=71.43 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=56.9
Q ss_pred ccccccccchhhhHHHHHHHHHh---------------cCCcEEEecCcccccccceeeeCCc---cchhhhcccccccc
Q psy16142 16 AEWHFLLYLLPWRWEPLLAGLRK---------------KGGTVSISNLGMFGIKNFSAIINPP---QACILAVGSLSQRL 77 (426)
Q Consensus 16 ~~~~~~l~~i~~e~~~L~~kar~---------------~gGtfTIsn~G~~G~~~~tpIInpp---q~aIlgvg~~~~~p 77 (426)
..+..++.+|.+++++|+.+||+ +||||||||+|+++.+.++...+++ ..+|+++|+..+.
T Consensus 105 ~~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~~~g~~~~~PIi~~Gk~~~~- 183 (217)
T 2i9d_A 105 FPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNYPLLNAGKAIIR- 183 (217)
T ss_dssp ECCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCBCSTTCCSSCEEEECCCEEE-
T ss_pred ecCCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCCCCCccceEEEEecceEEEE-
Confidence 35567899999999999999885 2899999999987533332222222 2467788888654
Q ss_pred ccccCceEecc----CCCCCcccceeeecccccCC
Q psy16142 78 VREGNDRVALP----ALSPTMEMGTIVSWAKKEGD 108 (426)
Q Consensus 78 ~v~~~~~i~mP----~lg~s~d~g~i~~w~v~vGd 108 (426)
++ ...|| .-+.-+||+.+.+|+....+
T Consensus 184 ---~~-r~~m~lsls~DHRvvDG~~aa~Fl~~lk~ 214 (217)
T 2i9d_A 184 ---EG-RLVMPIAMTIHHGFIDGHHLSLFYKKVED 214 (217)
T ss_dssp ---TT-EEEEEEEEEEETTTCCHHHHHHHHHHHHH
T ss_pred ---CC-cEEEEEEEEecchhhChHHHHHHHHHHHH
Confidence 22 22222 23334557777777766554
No 66
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.08 E-value=0.00016 Score=69.11 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=56.4
Q ss_pred cceeeecccccCCccccCcchhhhhccc----------------------------------------------------
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDK---------------------------------------------------- 123 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK---------------------------------------------------- 123 (426)
.|.|.++++++||.|++||+|+++++..
T Consensus 30 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~ 109 (277)
T 2f1m_A 30 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ 109 (277)
T ss_dssp CEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHH
T ss_pred cEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence 4899999999999999999999997631
Q ss_pred -------------------ccceeecCCCeEEEEEeecCCCccccCC--cEEEEEEcCC
Q psy16142 124 -------------------ATMGFETPEEGYLAKILVPAGSKDVPIG--KLVCIIVENE 161 (426)
Q Consensus 124 -------------------~~~ei~a~~~G~v~~i~v~~G~~~v~vG--~~l~~i~~~~ 161 (426)
-...|.||++|+|..+.+.+|+ .|..| ++|+.|...+
T Consensus 110 a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~-~v~~g~~~~l~~i~~~~ 167 (277)
T 2f1m_A 110 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGA-LVQNGQATALATVQQLD 167 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTC-EECTTCSSCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCC-EEcCCCCceeEEEecCC
Confidence 1247999999999999999999 89999 6999997644
No 67
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=96.97 E-value=0.00039 Score=68.87 Aligned_cols=65 Identities=22% Similarity=0.356 Sum_probs=57.1
Q ss_pred cceeeecccccCCccccCcchhhhhcccc---------------------------------------------------
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKA--------------------------------------------------- 124 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~--------------------------------------------------- 124 (426)
.|.|.++++++||.|++||+|+++++...
T Consensus 65 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~ 144 (359)
T 3lnn_A 65 AGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASE 144 (359)
T ss_dssp CEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHH
T ss_pred CEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999976432
Q ss_pred -------------------------cceeecCCCeEEEEEeecCCCccccC-CcEEEEEEcCC
Q psy16142 125 -------------------------TMGFETPEEGYLAKILVPAGSKDVPI-GKLVCIIVENE 161 (426)
Q Consensus 125 -------------------------~~ei~a~~~G~v~~i~v~~G~~~v~v-G~~l~~i~~~~ 161 (426)
...|.||++|+|.++.+.+|+ .|.. |++|+.|...+
T Consensus 145 l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~-~v~~~g~~l~~i~~~~ 206 (359)
T 3lnn_A 145 SQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGA-YWNDTTASLMTVADLS 206 (359)
T ss_dssp HHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTC-EECCSSCCSEEEECCS
T ss_pred HHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCc-eeCCCCcceEEEecCC
Confidence 246999999999999999999 8999 99999997644
No 68
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=96.94 E-value=0.00045 Score=67.90 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=30.6
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcE---EEEEEcCC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKL---VCIIVENE 161 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~---l~~i~~~~ 161 (426)
..|.||++|+|.++.+.+|+ .|..|++ |+.|...+
T Consensus 154 ~~i~AP~~G~V~~~~~~~G~-~v~~g~~~~~l~~i~~~~ 191 (341)
T 3fpp_A 154 TRIVAPMAGEVTQITTLQGQ-TVIAAQQAPNILTLADMS 191 (341)
T ss_dssp SEEECSSSEEEEEESSCTTC-EECCTTSCCCCEEEECCS
T ss_pred CEEECCCCeEEEEEecCCCC-EEecCCCCceEEEEecCC
Confidence 45999999999999999999 8999987 88887543
No 69
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=96.93 E-value=0.00046 Score=70.31 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=56.0
Q ss_pred cceeeeccc-ccCCccccCcchhhhhcc------------------------------------------------cccc
Q psy16142 96 MGTIVSWAK-KEGDKLNEGDLLAEIETD------------------------------------------------KATM 126 (426)
Q Consensus 96 ~g~i~~w~v-~vGd~Ve~gd~L~~vetd------------------------------------------------K~~~ 126 (426)
.|.|.++++ ++||.|++||+|+++++. ....
T Consensus 129 ~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~ 208 (413)
T 3ne5_B 129 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRF 208 (413)
T ss_dssp CEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCEE
T ss_pred CEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhccccccE
Confidence 578999998 999999999999999841 1245
Q ss_pred eeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 127 GFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 127 ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.|.||++|+|.++.+.+|+ .|..|++|+.|...
T Consensus 209 ~I~AP~~G~V~~~~v~~G~-~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 209 TLKAPIDGVITAFDLRAGM-NIAKDNVVAKIQGM 241 (413)
T ss_dssp EEECSSSEEEEECCCCTTC-EECTTSCSEEEEEE
T ss_pred EEEcCCCeEEEEEEcCCCC-EECCCCcEEEEeCC
Confidence 7999999999999999999 89999999999753
No 70
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=96.91 E-value=0.00038 Score=59.63 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=37.4
Q ss_pred ccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCC
Q psy16142 105 KEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS 145 (426)
Q Consensus 105 ~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~ 145 (426)
++|+.|++|+.++.||++|+..+|.||.+|+|.++.....+
T Consensus 41 ~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~ 81 (125)
T 3klr_A 41 EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE 81 (125)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence 78999999999999999999999999999999999655443
No 71
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=96.77 E-value=0.00056 Score=59.85 Aligned_cols=42 Identities=29% Similarity=0.404 Sum_probs=37.8
Q ss_pred cccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCC
Q psy16142 104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS 145 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~ 145 (426)
-++|+.|++|+.++.||++|+..+|.||.+|+|.++.-...+
T Consensus 62 P~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d 103 (143)
T 3mxu_A 62 PQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE 103 (143)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred CCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence 389999999999999999999999999999999998755443
No 72
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=96.70 E-value=0.00051 Score=59.71 Aligned_cols=38 Identities=18% Similarity=0.423 Sum_probs=35.7
Q ss_pred cccCCccccCcchhhhhcccccceeecCCCeEEEEEee
Q psy16142 104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 141 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v 141 (426)
-++|+.|++|+.++.||++|+..+|.||.+|+|.++.-
T Consensus 57 P~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~ 94 (137)
T 3tzu_A 57 PEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT 94 (137)
T ss_dssp CCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred CCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence 38999999999999999999999999999999999853
No 73
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.64 E-value=0.0015 Score=53.25 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=42.9
Q ss_pred CcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 113 GDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 113 gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
+...|.++.++-...|.||.+|+|.++++++|+ .|+.|++|+.++...
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~le~~k 52 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGG-HVEAGSSYAEMEVMK 52 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTE-EECTTCEEEEEEETT
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcC-EECCCCEEEEEEecc
Confidence 455688888988999999999999999999999 899999999998643
No 74
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=96.53 E-value=0.00064 Score=68.02 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=56.0
Q ss_pred cceeeecccccCCccccCcchhhhhcccc---------------------------------------------------
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKA--------------------------------------------------- 124 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~--------------------------------------------------- 124 (426)
.|.|.++++++||.|++||+|++|++...
T Consensus 51 ~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~ 130 (369)
T 1vf7_A 51 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ 130 (369)
T ss_dssp CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999975321
Q ss_pred ------cceeecCCCeEEEEEeecCCCccccCC--cEEEEEEcCC
Q psy16142 125 ------TMGFETPEEGYLAKILVPAGSKDVPIG--KLVCIIVENE 161 (426)
Q Consensus 125 ------~~ei~a~~~G~v~~i~v~~G~~~v~vG--~~l~~i~~~~ 161 (426)
...|.||++|+|.++.+.+|+ .|..| ++|+.|...+
T Consensus 131 a~~~l~~~~I~AP~~G~V~~~~v~~G~-~V~~g~g~~l~~i~~~~ 174 (369)
T 1vf7_A 131 ARINLRYTKVLSPISGRIGRSAVTEGA-LVTNGQANAMATVQQLD 174 (369)
T ss_dssp HHHHHHTTEEECSSSEEECCCSSCBTC-EECTTCSSCSEEEECCS
T ss_pred HHHhhcCCEEECCCCeEEEEEEcCCCC-eEcCCCCceeEEEecCC
Confidence 257999999999999999999 89995 8999987543
No 75
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=96.22 E-value=0.002 Score=57.05 Aligned_cols=38 Identities=18% Similarity=0.365 Sum_probs=35.6
Q ss_pred cccCCccccCcchhhhhcccccceeecCCCeEEEEEee
Q psy16142 104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 141 (426)
Q Consensus 104 v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v 141 (426)
-++|+.|++|+.++.||+.|+..+|.||.+|+|.++.-
T Consensus 67 P~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 67 PVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred CCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 48999999999999999999999999999999988853
No 76
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=96.05 E-value=0.00066 Score=67.36 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=28.1
Q ss_pred eeecCCCeEEEEEeecCCCccccCCcE---EEEEEc
Q psy16142 127 GFETPEEGYLAKILVPAGSKDVPIGKL---VCIIVE 159 (426)
Q Consensus 127 ei~a~~~G~v~~i~v~~G~~~v~vG~~---l~~i~~ 159 (426)
.|.||++|+|.++.+.+|+ .|..|++ |+.|..
T Consensus 156 ~i~AP~~G~V~~~~~~~G~-~v~~g~~~~~l~~i~~ 190 (369)
T 4dk0_A 156 KITSPIDGTVISTPVSEGQ-TVNSNQTTPTIIKVAD 190 (369)
T ss_dssp SCCCSCCSCCCBCCCCTTC-BCCTTTSCCCCBBCCC
T ss_pred EEECCCCeEEEEeeCCCCC-CccCCCCcceEEEEcC
Confidence 5999999999999999999 8999998 665543
No 77
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=95.91 E-value=0.0089 Score=45.06 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=30.9
Q ss_pred eeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 127 GFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 127 ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
+|.||.+|+|.++++++|+ .|..|++|+.|+...
T Consensus 1 ~v~a~~~G~v~~~~v~~G~-~V~~G~~l~~i~~~~ 34 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGD-QIEKGQEVAILESMK 34 (72)
T ss_dssp CEECCSSEEEEEECCCTTC-EECTTCEEEEEEETT
T ss_pred CEECcccEEEEEEEcCCcC-EECCCCEEEEEECCc
Confidence 4789999999999999999 899999999998653
No 78
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=95.73 E-value=0.011 Score=45.18 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=32.4
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.||.+|+|.++++++|+ .|+.|++|+.|+...
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~-~V~~G~~L~~l~~~~ 43 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGD-TVKAGQTVLVLEAMK 43 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTC-EECTTSEEEEEEETT
T ss_pred CeEEECCCCEEEEEEEcCCcC-EEcCCCEEEEEEccc
Confidence 457899999999999999999 899999999998643
No 79
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=95.67 E-value=0.013 Score=44.22 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=31.7
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
..|.||.+|+|.++++++|+ .|+.|++|+.++...
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~-~V~~G~~l~~i~~~~ 40 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGD-RVRVGQGLLVLEAMK 40 (74)
T ss_dssp CEEECSSCEEEEEECCCTTC-EECTTCEEEEEEETT
T ss_pred eEEecCCCEEEEEEEcCCCC-EeCCCCEEEEEeccc
Confidence 46899999999999999999 899999999998643
No 80
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=95.33 E-value=0.016 Score=48.09 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=31.7
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
+.|.|+.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~-~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGD-KVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTS-EECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcC-EECCCCEEEEECHH
Confidence 57899999999999999999 89999999999865
No 81
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=95.19 E-value=0.014 Score=45.86 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=32.4
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.||.+|+|.++++++|+ .|..|++|+.|+...
T Consensus 5 ~~~v~a~~~G~v~~~~v~~Gd-~V~~G~~l~~ie~~k 40 (84)
T 2kcc_A 5 PTVLRSPSAGKLTQYTVEDGG-HVEAGSSYAEMEVMK 40 (84)
T ss_dssp TTEECCSSSCCEEEESSCTTE-EECTTCEEEEEECSS
T ss_pred CceEECCCCEEEEEEECCCCC-EECCCCEEEEEEecc
Confidence 346999999999999999999 899999999998644
No 82
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=94.87 E-value=0.027 Score=55.74 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=48.7
Q ss_pred eeecccccCCccccCcchhhhhc----ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 99 IVSWAKKEGDKLNEGDLLAEIET----DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 99 i~~w~v~vGd~Ve~gd~L~~vet----dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
+.+..++.||.|++||+|++|.. .....+|.||++|+|.... ..- .|..|+.|+.|...
T Consensus 267 l~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~-~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 267 LFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPG-MIKSGDCAAVIGVV 329 (331)
T ss_dssp EEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSS-EECTTCEEEEEECB
T ss_pred EEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCC-ccCCCCEEEEEecc
Confidence 56778999999999999999986 3567899999999996554 444 68999999999653
No 83
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=94.55 E-value=0.033 Score=55.47 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=50.3
Q ss_pred eeecccccCCccccCcchhhhhc----ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 99 IVSWAKKEGDKLNEGDLLAEIET----DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 99 i~~w~v~vGd~Ve~gd~L~~vet----dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
+.+..++.|+.|++||+|+.|+. .++..+|.||.+|+|..+ .... .|..|+.|+.|...
T Consensus 277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~-~V~~Gd~l~~ia~~ 339 (354)
T 3cdx_A 277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPG-RVTRGDAVAVVMED 339 (354)
T ss_dssp EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSS-EECTTCEEEEEEEE
T ss_pred EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCC-ccCCCCEEEEEeee
Confidence 56777889999999999999986 478899999999999655 4676 78999999999753
No 84
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=94.28 E-value=0.046 Score=54.84 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=48.8
Q ss_pred eeeecccccCCccccCcchhhhhc------ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 98 TIVSWAKKEGDKLNEGDLLAEIET------DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 98 ~i~~w~v~vGd~Ve~gd~L~~vet------dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
=+..+.++.||.|++||+|++|-. .....+|.||.+|+|. .....- .|..|+.|+.|..
T Consensus 299 Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi--~~~~~p-~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 299 GMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPI--LHFASA-SVHQGTELYKVMT 363 (368)
T ss_dssp EEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEE--EECSSS-EECTTCEEEEEEE
T ss_pred EEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEE--EEeCCC-ccCCCCEEEEEee
Confidence 345789999999999999999876 3467899999999994 444555 7999999999865
No 85
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=94.16 E-value=0.038 Score=44.74 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=32.4
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.|+.+|+|.++++++|+ .|+.|++|+.|+...
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~ie~~~ 49 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGD-KVKAGDSLMVMIAMK 49 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTE-EECSSCEEEEEESSS
T ss_pred ceEEecCCCEEEEEEECCCCC-EECCCCEEEEEEccc
Confidence 456899999999999999999 899999999998643
No 86
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=94.16 E-value=0.027 Score=45.21 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=31.5
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
...|.||.+|+|.++++++|+ .|..|++|+.|+..
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGD-AVAEGQEICVIEAM 59 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTC-CCCTTCCCEEEEC-
T ss_pred ceEEECCCCEEEEEEECCCCC-EEcCCCEEEEEecc
Confidence 456899999999999999999 89999999999864
No 87
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=93.16 E-value=0.056 Score=41.64 Aligned_cols=35 Identities=20% Similarity=0.452 Sum_probs=31.5
Q ss_pred ceeecCCCeEEEEE-------eecCCCccccCCcEEEEEEcCC
Q psy16142 126 MGFETPEEGYLAKI-------LVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 126 ~ei~a~~~G~v~~i-------~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
..|.||..|+|.++ ++++|+ .|..|++|+.|+...
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~-~V~~G~~l~~ie~~k 46 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQ-KVNVGDTLCIVEAMK 46 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTC-EECTTCEEEEEEETT
T ss_pred eEEEcCCCeEEEEecccCcccccCCcC-EECCCCEEEEEEecc
Confidence 36899999999998 999999 899999999998754
No 88
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=92.29 E-value=0.058 Score=41.21 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=28.4
Q ss_pred ecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 129 ETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 129 ~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.++.+|+|.++++++|+ .|..|++|+.++...
T Consensus 11 ~~~~~G~v~~~~v~~G~-~V~~G~~l~~ie~~k 42 (77)
T 2l5t_A 11 EGVTEGEIVRWDVKEGD-MVEKDQDLVEVMTDK 42 (77)
T ss_dssp SSCCCEEEEECSCCTTC-EECSCCCCCEEESSS
T ss_pred CCCccEEEEEEEeCCCC-EECCCCEEEEEEccc
Confidence 35789999999999999 899999999998653
No 89
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=91.61 E-value=0.16 Score=45.22 Aligned_cols=58 Identities=28% Similarity=0.337 Sum_probs=44.1
Q ss_pred ceeeecccccCCcccc----CcchhhhhcccccceeecCCCeEEEEE---------------------------------
Q psy16142 97 GTIVSWAKKEGDKLNE----GDLLAEIETDKATMGFETPEEGYLAKI--------------------------------- 139 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~----gd~L~~vetdK~~~ei~a~~~G~v~~i--------------------------------- 139 (426)
|.+... .++.|.+-. |+-++...++ ..+.||++|+|..+
T Consensus 21 G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF 96 (161)
T 1f3z_A 21 GEIVNI-EDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGF 96 (161)
T ss_dssp EEEEEG-GGSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTE
T ss_pred eEEEEe-EECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCcc
Confidence 455554 356666554 6666666654 57899999999988
Q ss_pred --eecCCCccccCCcEEEEEEc
Q psy16142 140 --LVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 140 --~v~~G~~~v~vG~~l~~i~~ 159 (426)
++++|+ .|+.|++|+++..
T Consensus 97 ~~~V~~Gd-~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 97 KRIAEEGQ-RVKVGDTVIEFDL 117 (161)
T ss_dssp EECSCTTC-EECTTCEEEEECH
T ss_pred EEEEeCcC-EECCCCEEEEECH
Confidence 899999 7999999999963
No 90
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=91.53 E-value=0.17 Score=38.78 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=26.0
Q ss_pred CeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 133 EGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 133 ~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
+|+|.++++++|+ .|..|++|+.++...
T Consensus 14 ~G~v~~~~v~~G~-~V~~G~~l~~ie~~~ 41 (80)
T 1qjo_A 14 EVEVTEVMVKVGD-KVAAEQSLITVEGDK 41 (80)
T ss_dssp CEEEEECCCCTTC-EECBTSEEEEEESSS
T ss_pred CEEEEEEEcCCCC-EECCCCEEEEEEcCC
Confidence 9999999999999 899999999998754
No 91
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=91.46 E-value=0.15 Score=39.98 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=27.5
Q ss_pred CCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 131 PEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 131 ~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
...|+|.++++++|+ .|..|++|+.++....
T Consensus 17 ~~~G~v~~~~v~~Gd-~V~~G~~l~~ie~~k~ 47 (87)
T 3crk_C 17 MTMGTVQRWEKKVGE-KLSEGDLLAEIETDXA 47 (87)
T ss_dssp CCEEEEEEECSCTTC-EECTTCEEEEEECSSC
T ss_pred CCcEEEEEEEcCCCC-EEcCCCEEEEEECCcc
Confidence 468999999999999 8999999999987543
No 92
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=91.28 E-value=0.016 Score=45.51 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=31.4
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
.++|.+|.-|+|.++++++|+ .|..|++|+.|+...
T Consensus 2 ~~~i~~p~~G~v~~~~v~~Gd-~V~~G~~L~~ie~~k 37 (85)
T 2k7v_A 2 VKEVNVPDIVEVTEVMVKVGD-KVAAEQSLITVEGDK 37 (85)
T ss_dssp CSCCCCCSCCCCCSCCCSSSC-CCCCSSSCCCCSCCC
T ss_pred CcEEECCCeEEEEEEEcCCCC-EEcCCCEEEEEEccc
Confidence 356778888999999999999 899999999997654
No 93
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=91.26 E-value=0.099 Score=40.13 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=27.7
Q ss_pred cCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 130 TPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 130 a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
++.+|+|.++++++|+ .|..|++|+.++...
T Consensus 12 ~~~~G~i~~~~v~~Gd-~V~~G~~l~~ie~~k 42 (79)
T 1ghj_A 12 SIADGTVATWHKKPGE-AVKRDELIVDIETDK 42 (79)
T ss_dssp SCSCEEECCCSSCTTS-EECSSCEEEEEECSS
T ss_pred CCCCEEEEEEEcCCCC-EECCCCEEEEEEccc
Confidence 4579999999999999 899999999998654
No 94
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=91.14 E-value=0.16 Score=39.13 Aligned_cols=33 Identities=9% Similarity=0.185 Sum_probs=29.0
Q ss_pred eecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 128 FETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 128 i~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
+-++..|+|.++++++|+ .|+.|++|+.++...
T Consensus 10 ~g~~~~G~i~~~~v~~Gd-~V~~G~~l~~ie~~k 42 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGD-TIAVDDTLITLETDK 42 (81)
T ss_dssp CSSCSSEEEEEECCCSSC-BCCSSCCCEEEECSS
T ss_pred CCCCCcEEEEEEEcCCCC-EECCCCEEEEEEeCC
Confidence 335789999999999999 899999999998654
No 95
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=91.09 E-value=0.1 Score=51.19 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=39.5
Q ss_pred cchhhhhcc-cccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 114 DLLAEIETD-KATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 114 d~L~~vetd-K~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
..-..|+.+ .-...|.++.+|+|.++++++|+ .|+.|++|+.|+..+
T Consensus 45 ~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~-~V~kGq~L~~ld~~~ 92 (359)
T 3lnn_A 45 NLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGD-EVKAGDVLFTIDSAD 92 (359)
T ss_dssp EEEEEEECCSSSEEEECCSSCEEEEECCSCTTC-EECTTCEEEEEECSS
T ss_pred EEEEEEEECCCcEEEEeccCCEEEEEEEcCCCC-EEcCCCEEEEEChHH
Confidence 444556664 55788999999999999999999 899999999998653
No 96
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=91.06 E-value=0.091 Score=49.71 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=35.4
Q ss_pred hhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 117 AEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 117 ~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..|+.. -...|.++.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus 15 G~v~~~-~~~~v~a~~~G~V~~v~v~~G~-~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 15 GRTSAY-RIAEVRPQVSGIILKRNFKEGS-DIEAGVSLYQIDPA 56 (277)
T ss_dssp EEEECS-EEEEECCSSCEEEEEECSCTTC-EECTTSCSEEECCH
T ss_pred EEEEee-eEEEEEccccEEEEEEEcCCCC-EecCCCEEEEECcH
Confidence 345554 3567999999999999999999 89999999999754
No 97
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=91.04 E-value=0.21 Score=39.91 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=27.4
Q ss_pred CCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 131 PEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 131 ~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..+|+|.++++++|+ .|..|++|+.++....
T Consensus 16 ~~~G~v~~~~v~~Gd-~V~~G~~l~~ie~~K~ 46 (93)
T 1k8m_A 16 IREVTVKEWYVKEGD-TVSQFDSICEVQSDKA 46 (93)
T ss_dssp SCCEEEEEECCCTTC-EECSSSCCEEEECSSC
T ss_pred CCCEEEEEEEcCCcC-EECCCCEEEEEEcCCc
Confidence 368999999999999 8999999999986543
No 98
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.90 E-value=0.19 Score=40.61 Aligned_cols=30 Identities=33% Similarity=0.566 Sum_probs=26.9
Q ss_pred CCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 132 EEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..|+|.++++++|+ .|..|++|+.|+....
T Consensus 20 ~~G~i~~~~v~~Gd-~V~~G~~L~~ie~~K~ 49 (98)
T 2dnc_A 20 EEGNIVKWLKKEGE-AVSAGDALCEIETDKA 49 (98)
T ss_dssp SEECEEEESSCTTC-EECTTSEEEEEECSSC
T ss_pred ccEEEEEEEcCCCC-EeCCCCEEEEEEcccc
Confidence 58999999999999 8999999999987543
No 99
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=90.25 E-value=0.23 Score=40.93 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=26.5
Q ss_pred CCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 132 EEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
..|+|.++++++|+ .|..|++|++|+...
T Consensus 20 ~~G~v~~~~v~~Gd-~V~~G~~L~~iE~~K 48 (108)
T 2dne_A 20 QAGTIARWEKKEGD-KINEGDLIAEVETDK 48 (108)
T ss_dssp CEEEEEECSSCTTC-EECTTSEEEEEECSS
T ss_pred ccEEEEEEEcCCCC-EecCCCEEEEEEcCc
Confidence 58999999999999 899999999998654
No 100
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=90.25 E-value=0.2 Score=44.24 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=42.6
Q ss_pred ceeeecccccCCcccc----CcchhhhhcccccceeecCCCeEEEE----------------------------------
Q psy16142 97 GTIVSWAKKEGDKLNE----GDLLAEIETDKATMGFETPEEGYLAK---------------------------------- 138 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~----gd~L~~vetdK~~~ei~a~~~G~v~~---------------------------------- 138 (426)
|++... .++.|.+-. |+-++...++ ..+.||++|+|..
T Consensus 16 G~vv~l-~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF 91 (154)
T 2gpr_A 16 GTIITL-DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGF 91 (154)
T ss_dssp EEEECG-GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSE
T ss_pred eEEEEe-eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCce
Confidence 444443 355665544 5666666654 5799999999987
Q ss_pred -EeecCCCccccCCcEEEEEEc
Q psy16142 139 -ILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 139 -i~v~~G~~~v~vG~~l~~i~~ 159 (426)
++|++|| .|+.|++|+++..
T Consensus 92 ~~~V~~Gd-~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 92 ESFVTQDQ-EVNAGDKLVTVDL 112 (154)
T ss_dssp EECCCTTC-EECTTCEEEEECH
T ss_pred EEEEcCCC-EEcCCCEEEEECH
Confidence 4899999 7999999999963
No 101
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=89.61 E-value=0.17 Score=45.02 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=43.6
Q ss_pred ceeeecccccCCcccc----CcchhhhhcccccceeecCCCeEEEEE---------------------------------
Q psy16142 97 GTIVSWAKKEGDKLNE----GDLLAEIETDKATMGFETPEEGYLAKI--------------------------------- 139 (426)
Q Consensus 97 g~i~~w~v~vGd~Ve~----gd~L~~vetdK~~~ei~a~~~G~v~~i--------------------------------- 139 (426)
|++... .++.|.+-. |+-++...+ ...+.||++|+|..+
T Consensus 21 G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~gF 96 (162)
T 1ax3_A 21 GEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGF 96 (162)
T ss_dssp EEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTTE
T ss_pred eEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCcc
Confidence 555554 556666554 566665554 457899999999988
Q ss_pred --eecCCCccccCCcEEEEEEc
Q psy16142 140 --LVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 140 --~v~~G~~~v~vG~~l~~i~~ 159 (426)
+|++|+ .|+.|++|+.+.-
T Consensus 97 ~~~V~~Gd-~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 97 TSFVSEGD-RVEPGQKLLEVDL 117 (162)
T ss_dssp EESCCCCS-EECSEEEEEEECH
T ss_pred EEEEeCCC-EEcCCCEEEEECH
Confidence 899999 7999999999963
No 102
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=89.55 E-value=0.22 Score=48.39 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=35.5
Q ss_pred hhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 117 AEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 117 ~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..|+.. -...|.++.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus 24 G~v~~~-~~~~v~~~~~G~V~~v~v~~G~-~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 24 GKLDAL-RKVDVGAQVSGQLKTLSVAIGD-KVKKDQLLGVIDPE 65 (341)
T ss_dssp EEEEES-SEEECCCSSCEEEEEECCCTTC-EECTTCEEEEECCH
T ss_pred EEEEee-EEEEEeccCCcEEEEEEeCCCC-EECCCCEEEEEChH
Confidence 345554 3668999999999999999999 89999999999754
No 103
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=89.25 E-value=0.41 Score=40.81 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=26.9
Q ss_pred CCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 132 EEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
.+|+|.++++++|+ .|..|++|++|+....
T Consensus 40 ~~G~V~~~~V~~Gd-~V~~Gd~L~~iEa~K~ 69 (128)
T 1y8o_B 40 TMGTVQRWEKKVGE-KLSEGDLLAEIETDKA 69 (128)
T ss_dssp SEEEEEEECSCTTC-EECTTCEEEEEECSSC
T ss_pred ccEEEEEEecCCCC-EecCCCEEEEEEcCcc
Confidence 57999999999999 8999999999986543
No 104
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=88.77 E-value=0.38 Score=47.19 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=46.2
Q ss_pred eeecccccCCccccCcchhhhhc----ccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 99 IVSWAKKEGDKLNEGDLLAEIET----DKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 99 i~~w~v~vGd~Ve~gd~L~~vet----dK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
+....+..|+.|++||+|+++-. .....+|.||.+|+|.-. ...- .|..|+.|+.|..
T Consensus 267 ~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~--~~~p-~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 267 IFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAM-YVQGNEEVAILAR 328 (332)
T ss_dssp EEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSE-EECTTCEEEEEEE
T ss_pred EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE--eCCC-eeCCCCEEEEEee
Confidence 44577889999999999999843 456788999999999444 4554 6899999998864
No 105
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=87.12 E-value=0.11 Score=40.02 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=26.6
Q ss_pred CCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 131 PEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 131 ~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
..+|+|.++++++|+ .|..|++|+.++...
T Consensus 14 ~~~G~v~~~~v~~Gd-~V~~G~~l~~ie~~k 43 (80)
T 1pmr_A 14 VADATVATWHKKPGD-AVVRDEVLVEIETDK 43 (80)
T ss_dssp CSCEECCBCCCCTTC-CBSSSCCBCBCCSSS
T ss_pred CccEEEEEEECCCcC-EECCCCEEEEEEccc
Confidence 468999999999999 899999999997643
No 106
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=86.74 E-value=0.76 Score=34.99 Aligned_cols=27 Identities=11% Similarity=0.260 Sum_probs=24.4
Q ss_pred CeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 133 EGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 133 ~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
+ +|.++++++|+ .|..|++|+.++...
T Consensus 13 ~-~i~~~~v~~Gd-~V~~G~~l~~le~~k 39 (79)
T 1iyu_A 13 G-EVIELLVKTGD-LIEVEQGLVVLESAK 39 (79)
T ss_dssp E-EEEEECCCTTC-BCCSSSEEEEEECSS
T ss_pred C-EEEEEecCCCC-EEcCCCEEEEEEccc
Confidence 5 89999999999 899999999998654
No 107
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=86.63 E-value=0.55 Score=47.39 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=41.0
Q ss_pred CCccccCcchhhhhcc-cccceeecCCCeEEEEEee-cCCCccccCCcEEEEEEcCC
Q psy16142 107 GDKLNEGDLLAEIETD-KATMGFETPEEGYLAKILV-PAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 107 Gd~Ve~gd~L~~vetd-K~~~ei~a~~~G~v~~i~v-~~G~~~v~vG~~l~~i~~~~ 161 (426)
++.-..-.....|+.| .-...|.++.+|+|.++++ ++|+ .|+.|++|+.|...+
T Consensus 102 ~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd-~VkkGq~L~~ld~~~ 157 (413)
T 3ne5_B 102 GPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGD-KVQKGTPLLDLTIPD 157 (413)
T ss_dssp ECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTC-EECTTCEEEEEECCS
T ss_pred eecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCC-EEcCCCEEEEEcCHH
Confidence 3333333445566643 4467899999999999998 9999 899999999998543
No 108
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=86.58 E-value=0.34 Score=47.98 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=34.6
Q ss_pred hhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 118 EIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 118 ~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
.|+.. -...|.++.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus 37 ~v~~~-~~~~v~a~v~G~V~~v~v~~Gd-~V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 37 RTNAF-RIAEVRPQVNGIILKRLFKEGS-DVKAGQQLYQIDPA 77 (369)
T ss_dssp ECEES-CEEEECCSSCEEEEECCSCSSE-EECTTSEEEEECCH
T ss_pred EEEee-eEEEEEeeCceEEEEEEcCCCC-EEcCCCEEEEECcH
Confidence 34443 3567999999999999999999 89999999999753
No 109
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=85.54 E-value=0.68 Score=50.02 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=32.9
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.||..|+|.+++|++|+ .|+.||+|++++...
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd-~V~~g~~l~~iEamK 647 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQ-EVQEGQALCTIEAMK 647 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTC-EECTTCEEEEEECSS
T ss_pred CCeEECCCcEEEEEEEeCCCC-EEcCCCEEEEEEecC
Confidence 457999999999999999999 899999999998654
No 110
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=84.88 E-value=0.42 Score=43.58 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=28.8
Q ss_pred eecccccCCccccCcchhhhhcccccceeecCCCeEEEEE
Q psy16142 100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKI 139 (426)
Q Consensus 100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i 139 (426)
+..+++.|+.|++||.||+.. .|-+.++|+|.+.
T Consensus 21 A~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~ 54 (193)
T 2xha_A 21 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDV 54 (193)
T ss_dssp CEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred CEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEee
Confidence 467899999999999999776 7889999988543
No 111
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=82.81 E-value=0.29 Score=48.12 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=35.2
Q ss_pred hhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 117 AEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 117 ~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..|+.. -...|.++.+|+|.++++++|+ .|+.|++|+.|+..
T Consensus 25 G~v~~~-~~~~v~~~~~G~V~~v~v~~G~-~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 25 GSIESI-NTVDVGAQVSGKITKLYVKLGQ-QVKKGDLLAEIDST 66 (369)
T ss_dssp EEEECS-SCCCBCCCSCSBCCEECCCTTS-CCCSSCCCEECCCH
T ss_pred EEEEee-eeEEEecCCCcEEEEEEECCCC-EECCCCEEEEEcCH
Confidence 345543 3567999999999999999999 89999999999754
No 112
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=80.23 E-value=1.4 Score=50.53 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=33.3
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
...|.||..|+|.+++|++|+ .|+.|++|+.++...-
T Consensus 1077 ~~~v~ap~~G~v~~~~v~~Gd-~V~~G~~l~~ieamK~ 1113 (1150)
T 3hbl_A 1077 PSHIGAQMPGSVTEVKVSVGE-TVKANQPLLITEAMKM 1113 (1150)
T ss_dssp SSEEECSSSEEEEEECCCTTC-EECTTCEEEEEESSSC
T ss_pred CceeecCceEEEEEEEeCCCC-EECCCCEEEEEEeccc
Confidence 357999999999999999999 8999999999987543
No 113
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=80.05 E-value=1.1 Score=48.71 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=32.7
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.||..|+|.+++|++|+ .|+.|++|++|+...
T Consensus 649 ~~~v~ap~~G~V~~v~V~~Gd-~V~~Gq~L~~iEamK 684 (718)
T 3bg3_A 649 KGQIGAPMPGKVIDIKVVAGA-KVAKGQPLCVLSAMK 684 (718)
T ss_dssp SSCEECSSCEEEEEECSCTTC-CBCTTCCCEEEESSS
T ss_pred CceEeCCCCeEEEEEEeCCCC-eeCCCCEEEEEeccc
Confidence 357999999999999999999 899999999998654
No 114
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=79.86 E-value=1.3 Score=51.06 Aligned_cols=36 Identities=22% Similarity=0.172 Sum_probs=32.7
Q ss_pred ceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 126 MGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 126 ~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..|.||..|+|.++++++|| .|+.|++|++|+...-
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd-~V~~g~~l~~iEamK~ 1203 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGD-HVEAGDGVIIIEAMKT 1203 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTC-EECSSCEEEEEEETTE
T ss_pred cEEeCCCcEEEEEEEcCCCC-EECCCCEEEEEEecCc
Confidence 45999999999999999999 8999999999987553
No 115
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=79.09 E-value=1.5 Score=39.97 Aligned_cols=46 Identities=20% Similarity=0.355 Sum_probs=38.0
Q ss_pred ccccCCccccCcchhhhhcccccceeecCCCeEEEE--------------------------E--eecCCCccccCCcEE
Q psy16142 103 AKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAK--------------------------I--LVPAGSKDVPIGKLV 154 (426)
Q Consensus 103 ~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~--------------------------i--~v~~G~~~v~vG~~l 154 (426)
-++.|+.|..||+|+ | ...|-|+.+|+|.- + +|++|+ .|..|+.|
T Consensus 84 ~V~dG~~V~~GdvLA-----K-d~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd-~V~~Ge~L 156 (193)
T 2xha_A 84 GLRVGTKVKQGLPLS-----K-NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGK-EVKQGEML 156 (193)
T ss_dssp TCCTTCEECTTSBSS-----T-TSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTC-EECTTCEE
T ss_pred EcCCCCEEcCCCEEe-----c-CCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCC-EECCCCCc
Confidence 478999999999999 3 45678999999841 2 889998 89999988
Q ss_pred E
Q psy16142 155 C 155 (426)
Q Consensus 155 ~ 155 (426)
+
T Consensus 157 ~ 157 (193)
T 2xha_A 157 A 157 (193)
T ss_dssp E
T ss_pred c
Confidence 6
No 116
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=76.56 E-value=1.3 Score=44.19 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=28.6
Q ss_pred eecccccCCccccCcchhhhhcccccceeecCCCeEEEEE
Q psy16142 100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKI 139 (426)
Q Consensus 100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i 139 (426)
+..+++.|+.|++||.||+.. .|-|..+|+|.+.
T Consensus 61 a~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~ 94 (352)
T 2xhc_A 61 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDV 94 (352)
T ss_dssp CEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred CEEEecCCCEEcCCCEEEEec------cEEEecceEEEee
Confidence 477899999999999999876 7888888888543
No 117
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=76.51 E-value=2.3 Score=38.40 Aligned_cols=20 Identities=20% Similarity=0.160 Sum_probs=17.8
Q ss_pred EeecCCCccccCCcEEEEEEc
Q psy16142 139 ILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 139 i~v~~G~~~v~vG~~l~~i~~ 159 (426)
.+|++|+ .|+.|++|+.+.-
T Consensus 120 ~~V~~Gd-~Vk~Gd~L~~fD~ 139 (183)
T 3our_B 120 RIAEEGQ-TVKAGDTVIEFDL 139 (183)
T ss_dssp ECSCTTC-EECTTCEEEEECH
T ss_pred EEEeCcC-EEcCCCEEEEECH
Confidence 4899999 7999999999964
No 118
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=74.49 E-value=0.63 Score=50.25 Aligned_cols=36 Identities=22% Similarity=0.479 Sum_probs=0.0
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.||..|+|.++++++|+ .|+.|++|++++...
T Consensus 602 ~~~v~ap~~G~v~~~~v~~Gd-~V~~g~~l~~iEamK 637 (675)
T 3u9t_A 602 QGGLSAPMNGSIVRVLVEPGQ-TVEAGATLVVLEAMK 637 (675)
T ss_dssp -------------------------------------
T ss_pred CCeEECCCCEEEEEEEeCCCC-EEcCCCEEEEEEecc
Confidence 456999999999999999999 899999999998653
No 119
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=73.28 E-value=2.4 Score=48.67 Aligned_cols=36 Identities=19% Similarity=0.407 Sum_probs=28.7
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcCC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVENE 161 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~ 161 (426)
...|.||..|+|.++++++|+ .|+.|++|++++...
T Consensus 1095 ~~~v~ap~~G~v~~~~v~~Gd-~V~~G~~l~~iEamK 1130 (1165)
T 2qf7_A 1095 AAHVGAPMPGVISRVFVSSGQ-AVNAGDVLVSIEAMK 1130 (1165)
T ss_dssp TTEEECSSCEEEEEECCSSCC-CC---CEEEEEEC--
T ss_pred CceeeCCCCeEEEEEEcCCcC-EeCCCCEEEEEEccc
Confidence 367999999999999999999 899999999998643
No 120
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=70.23 E-value=2.8 Score=37.13 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=37.5
Q ss_pred cceeeecccccCCccccCcchhhhhcccccce-eecCCCeEEEEEe
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMG-FETPEEGYLAKIL 140 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK~~~e-i~a~~~G~v~~i~ 140 (426)
+|..+-..+.+|+.|.+|+.|+-|.|-|-++- +.||++|+|.-+.
T Consensus 108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~ 153 (169)
T 3d4r_A 108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN 153 (169)
T ss_dssp CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence 45556667899999999999999999998775 8999999996554
No 121
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=66.53 E-value=3.3 Score=37.44 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=37.7
Q ss_pred eecccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCC
Q psy16142 100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGS 145 (426)
Q Consensus 100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~ 145 (426)
+..+++.|+.|++|+.|++. |..+..|-+..+|+|.=-.+-+|.
T Consensus 62 a~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~ 105 (190)
T 2auk_A 62 AVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQ 105 (190)
T ss_dssp CEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTT
T ss_pred CEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCc
Confidence 46789999999999999977 799999999999999666555554
No 122
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=65.04 E-value=1.3 Score=41.31 Aligned_cols=30 Identities=33% Similarity=0.566 Sum_probs=0.0
Q ss_pred CCeEEEEEeecCCCccccCCcEEEEEEcCCc
Q psy16142 132 EEGYLAKILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 132 ~~G~v~~i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..|+|.+|++++|| .|..|++|++|+.+..
T Consensus 16 ~eG~I~~w~vk~Gd-~V~~Gd~L~~iEtdK~ 45 (229)
T 1zy8_K 16 EEGNIVKWLKKEGE-AVSAGDALCEIETDKA 45 (229)
T ss_dssp -------------------------------
T ss_pred CcEEEEEEecCCCC-EeCCCCEEEEEecCCc
Confidence 58999999999999 8999999999986543
No 123
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=59.20 E-value=7.6 Score=38.58 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=29.4
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEc
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
.--+.||.+|.+ ...++.|+ .|+.|++|++|.+
T Consensus 290 ~~~v~A~~~Gl~-~~~v~lGd-~V~kG~~la~I~d 322 (368)
T 3fmc_A 290 YRKFHAPKAGMV-EYLGKVGV-PMKATDPLVNLLR 322 (368)
T ss_dssp EEEEECSSCEEE-EECSCTTC-CBCTTCEEEEEEC
T ss_pred cEEEecCCCEEE-EEeCCCCC-EeCCCCEEEEEEc
Confidence 335899999999 58999999 8999999999976
No 124
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=56.47 E-value=13 Score=37.90 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=36.8
Q ss_pred hhcccccceeecCCCeEEEEE-------------------------------eecCCCccccCCcEEEEEEcCCc
Q psy16142 119 IETDKATMGFETPEEGYLAKI-------------------------------LVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 119 vetdK~~~ei~a~~~G~v~~i-------------------------------~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
+-.-+...+|.|+.+|+|..| +.+.|+ .|..|++|++|....+
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~-~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 329 LPKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGD-RVQKGEALATIHSNRP 402 (433)
T ss_dssp SCCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTC-EECTTCEEEEEEESSS
T ss_pred CCCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCC-EECCCCeEEEEEcCCc
Confidence 445688899999999999877 888999 8999999999986543
No 125
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=56.44 E-value=10 Score=38.57 Aligned_cols=42 Identities=14% Similarity=0.321 Sum_probs=35.8
Q ss_pred hhcccccceeecCCCeEEEEE-------------------------------eecCCCccccCCcEEEEEEcCCc
Q psy16142 119 IETDKATMGFETPEEGYLAKI-------------------------------LVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 119 vetdK~~~ei~a~~~G~v~~i-------------------------------~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
+-.-+ ..+|.|+.+|+|..| +.+.|+ .|..|++|++|....+
T Consensus 322 ~~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~-~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 322 LPLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGD-RVERGEALALVYHRRR 394 (423)
T ss_dssp SCCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTC-EECTTSEEEEEEECSS
T ss_pred CCCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCC-EeCCCCeEEEEEeCCc
Confidence 44567 899999999999877 888999 8999999999986544
No 126
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=55.51 E-value=9 Score=37.41 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=29.4
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..-|.||.+|.+ ...++.|+ .|+.|++|++|.+.
T Consensus 257 ~~~v~A~~~Gl~-~~~v~~Gd-~V~~G~~la~I~dp 290 (331)
T 3na6_A 257 DCYLFSEHDGLF-EIMIDLGE-PVQEGDLVARVWSP 290 (331)
T ss_dssp CCCEECSSCEEE-EESSCTTC-EECTTCEEEEEECS
T ss_pred cEEEeCCCCeEE-EEcCCCCC-EEcCCCEEEEEEcC
Confidence 445899999988 56799999 89999999999874
No 127
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=51.14 E-value=9.1 Score=37.65 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=40.5
Q ss_pred cccccCCccccCcchhhhhcccccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 102 WAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 102 w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..++.|+.|++||+|+++- | .+|.+|++|.+ +... .- .|..|+.++.+...
T Consensus 279 ~~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~--i~~p-~p-~V~~G~~~~~i~~~ 329 (350)
T 2bco_A 279 DNVENFTSFVHGEVFGHDG-D---KPLMAKNDNEA--IVFP-NR-HVAIGQRAALMVCE 329 (350)
T ss_dssp TTCCBTEECCTTCEEEEET-T---EEEECSSSSCE--EESC-CT-TCCTTSEEEEEEEE
T ss_pred ccccCCCEeCCCCEEEEEC-C---EEEEeCCCCEE--EEec-CC-CCCCCcEEEEEEEE
Confidence 4578999999999999884 3 67899999987 3344 54 69999988887643
No 128
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=49.93 E-value=14 Score=37.64 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=34.1
Q ss_pred hcccccceeecCCCeEEEEE-------------------------------eecCCCccccCCcEEEEEE
Q psy16142 120 ETDKATMGFETPEEGYLAKI-------------------------------LVPAGSKDVPIGKLVCIIV 158 (426)
Q Consensus 120 etdK~~~ei~a~~~G~v~~i-------------------------------~v~~G~~~v~vG~~l~~i~ 158 (426)
..-+...+|.|+.+|+|..| +++.|+ .|..|++|++|.
T Consensus 333 ~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~-~V~~g~~l~~i~ 401 (436)
T 3h5q_A 333 PQAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGD-KVEEGESLLTIH 401 (436)
T ss_dssp CCCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTC-EECTTSEEEEEE
T ss_pred CCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcC-EeCCCCeEEEEe
Confidence 44577899999999999988 788999 899999999998
No 129
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=49.32 E-value=10 Score=38.69 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=37.0
Q ss_pred hhcccccceeecCCCeEEEEE-------------------------------eecCCCccccCCcEEEEEEcCCc
Q psy16142 119 IETDKATMGFETPEEGYLAKI-------------------------------LVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 119 vetdK~~~ei~a~~~G~v~~i-------------------------------~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
+-.-+...+|.|+.+|+|..| +.+.|+ .|..|++|++|....+
T Consensus 334 ~~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~-~v~~g~~l~~i~~~~~ 407 (440)
T 2tpt_A 334 LPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGD-QVDGQRPLAVIHAKDE 407 (440)
T ss_dssp SCCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTC-EEBTTBCSEEEEESSH
T ss_pred CCCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCC-EECCCCeEEEEecCCH
Confidence 445778899999999999887 888999 8999999999986544
No 130
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=49.21 E-value=8.8 Score=44.29 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=31.9
Q ss_pred eecccccCCccccCcchhhhhcccccceeecCCCeEEEE
Q psy16142 100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAK 138 (426)
Q Consensus 100 ~~w~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~~ 138 (426)
+..+++.|+.|++||.|++. |--+..|-++++|+|.=
T Consensus 1001 s~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f 1037 (1407)
T 3lu0_D 1001 AVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRF 1037 (1407)
T ss_dssp CEESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEE
T ss_pred CEEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEEE
Confidence 46789999999999999987 66788899999998854
No 131
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=49.17 E-value=5.8 Score=39.35 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=33.6
Q ss_pred ccccCCccccCcchhhhhcccccceeecCCCeEEE------------------E----------EeecCCCccccCCcEE
Q psy16142 103 AKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLA------------------K----------ILVPAGSKDVPIGKLV 154 (426)
Q Consensus 103 ~v~vGd~Ve~gd~L~~vetdK~~~ei~a~~~G~v~------------------~----------i~v~~G~~~v~vG~~l 154 (426)
-++.|+.|..||+|+ | ...|-|+.+|+|. + ++|++|| .|..|++|
T Consensus 124 ~v~~g~~v~~G~vla-----k-~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd-~V~~G~~l 196 (352)
T 2xhc_A 124 GLRVGTKVKQGLPLS-----K-NEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGK-EVKQGEML 196 (352)
T ss_dssp TCCTTCEECTTCBSB-----S-SSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTC-EECTTCEE
T ss_pred ecCCCCEEccCcEEe-----c-CceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCC-EEeCCCCc
Confidence 488999999999998 3 4556677777774 1 1366777 68888877
Q ss_pred E
Q psy16142 155 C 155 (426)
Q Consensus 155 ~ 155 (426)
+
T Consensus 197 ~ 197 (352)
T 2xhc_A 197 A 197 (352)
T ss_dssp E
T ss_pred c
Confidence 6
No 132
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=43.10 E-value=24 Score=36.35 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=35.6
Q ss_pred hhcccccceeecCCCeEEEE-----------------------------EeecCCCccccCCcEEEEEEcCCc
Q psy16142 119 IETDKATMGFETPEEGYLAK-----------------------------ILVPAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 119 vetdK~~~ei~a~~~G~v~~-----------------------------i~v~~G~~~v~vG~~l~~i~~~~~ 162 (426)
+-.-+...+|.|+.+|+|.. ++++.|+ .|..|++|++|....+
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~-~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQ-RLRRGTPWLRVHRDGP 437 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTC-EECTTCEEEEEEESSS
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCC-EECCCCeEEEEEcCCh
Confidence 44567789999999999954 5888999 8999999999986543
No 133
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=38.91 E-value=27 Score=34.19 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=30.0
Q ss_pred cccceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 123 KATMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 123 K~~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
+-..-+.|+.+|.+ +..++.|+ .|+.|++|+++.+.
T Consensus 265 ~~~~~v~A~~~G~~-~~~~~~g~-~V~~G~~La~i~d~ 300 (354)
T 3cdx_A 265 EADAYVMAPRTGLF-EPTHYVGE-EVRTGETAGWIHFV 300 (354)
T ss_dssp CGGGEEECSSCEEE-EESCCTTC-EECTTSEEEEEECT
T ss_pred CCcEEEECCCCEEE-EEeCCCCC-EeCCCCEEEEEECC
Confidence 34556899999966 67789999 89999999999864
No 134
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=38.43 E-value=16 Score=31.82 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=23.4
Q ss_pred cceeeecccccCCccccCcchhhhhccc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDK 123 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK 123 (426)
.|.--+.++++||.|++||.|+++.-++
T Consensus 87 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 114 (154)
T 2gpr_A 87 DGNGFESFVTQDQEVNAGDKLVTVDLKS 114 (154)
T ss_dssp TTCSEEECCCTTCEECTTCEEEEECHHH
T ss_pred CCCceEEEEcCCCEEcCCCEEEEECHHH
Confidence 5666788999999999999999886543
No 135
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=36.18 E-value=34 Score=30.39 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=19.7
Q ss_pred EEEEeecCCCccccCCcEEEEEEc
Q psy16142 136 LAKILVPAGSKDVPIGKLVCIIVE 159 (426)
Q Consensus 136 v~~i~v~~G~~~v~vG~~l~~i~~ 159 (426)
+.++.|++|+ .|+.||+|+.+..
T Consensus 82 L~~i~V~~G~-~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 82 MDQIQVSNGQ-QVSADTKLGVYAG 104 (182)
T ss_dssp EESCCCCTTC-EECTTCEEEEECS
T ss_pred CCccccCCCC-EEcCCCEEEeecC
Confidence 3466899999 8999999999975
No 136
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=36.08 E-value=8.8 Score=31.16 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=16.6
Q ss_pred ccccccccCcCCccchHHHHH
Q psy16142 388 RSLISFRRPVKFSEESNDVKT 408 (426)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~ 408 (426)
+|.|.|.||++|.|-...+++
T Consensus 19 kRIi~f~RPv~f~eL~~Kv~~ 39 (103)
T 2cu1_A 19 KRILQFPRPVKLEDLRSKAKI 39 (103)
T ss_dssp EEEEEEESSCCHHHHHHHHHH
T ss_pred EEEEeccCCccHHHHHHHHHH
Confidence 578999999999876655554
No 137
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=31.56 E-value=90 Score=21.79 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhccccc
Q psy16142 304 KLREQMNKALEKRGAKLSINDFIIKATALASRRVPEAN 341 (426)
Q Consensus 304 ~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p~~n 341 (426)
++.+.+....... ..|+|.+|..++..++.+--.++
T Consensus 17 eL~~~l~~~A~~~--grS~N~~i~~~L~~~l~~~~r~~ 52 (53)
T 1baz_A 17 EVLDLVRKVAEEN--GRSVNSEIYQRVMESFKKEGRIG 52 (53)
T ss_dssp HHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhhccccC
Confidence 4555555443333 57999999999999998765554
No 138
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=27.66 E-value=40 Score=28.61 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=26.4
Q ss_pred eecCCCeEEEEEee-cCCCccccCCcEEEEEEcCCc
Q psy16142 128 FETPEEGYLAKILV-PAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 128 i~a~~~G~v~~i~v-~~G~~~v~vG~~l~~i~~~~~ 162 (426)
+.+|.-|.|..+.+ ++|+ .|..|++|+.|+....
T Consensus 39 ~a~~~lG~i~~V~lp~vGd-~V~~Gd~l~~VEs~K~ 73 (136)
T 1zko_A 39 HAQEQLGDVVYVDLPEVGR-EVKKGEVVASIESVKA 73 (136)
T ss_dssp HHHHHHCSEEEEECCCTTC-EECTTCEEEEEEESSC
T ss_pred hhcccCCCcEEEEecCCCC-EEeCCCEEEEEEEccE
Confidence 44556676777766 9999 7999999999986543
No 139
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=26.62 E-value=16 Score=29.00 Aligned_cols=20 Identities=40% Similarity=0.826 Sum_probs=15.1
Q ss_pred ccccccccCcCCccchHHHH
Q psy16142 388 RSLISFRRPVKFSEESNDVK 407 (426)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~ 407 (426)
+|.|-|.||+||.+-...++
T Consensus 15 KRIi~f~RPvkf~dl~qkv~ 34 (94)
T 2jrh_A 15 RRIIAFSRPVKYEDVEHKVT 34 (94)
T ss_dssp EEEEEECSSCCHHHHHHHHH
T ss_pred eEEEecCCCccHHHHHHHHH
Confidence 57899999999976544444
No 140
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=25.47 E-value=43 Score=28.19 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=26.9
Q ss_pred eecCCCeEEEEEee-cCCCccccCCcEEEEEEcCCc
Q psy16142 128 FETPEEGYLAKILV-PAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 128 i~a~~~G~v~~i~v-~~G~~~v~vG~~l~~i~~~~~ 162 (426)
+..+.-|.|..+.+ ++|+ .|..|++|+.|+....
T Consensus 30 ~a~~~lG~i~~v~lp~~G~-~V~~g~~l~~vEs~K~ 64 (131)
T 1hpc_A 30 HAQDHLGEVVFVELPEPGV-SVTKGKGFGAVESVKA 64 (131)
T ss_dssp HHHHHHCSEEEEECCCTTC-EECBTSEEEEEEESSC
T ss_pred hhcccCCCceEEEecCCCC-EEeCCCEEEEEEecce
Confidence 34466677878877 9999 7999999999986543
No 141
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=23.06 E-value=67 Score=30.90 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=28.7
Q ss_pred cceeecCCCeEEEEEeecCCCccccCCcEEEEEEcC
Q psy16142 125 TMGFETPEEGYLAKILVPAGSKDVPIGKLVCIIVEN 160 (426)
Q Consensus 125 ~~ei~a~~~G~v~~i~v~~G~~~v~vG~~l~~i~~~ 160 (426)
..-+.|+..|.+. -.++.|+ .|+.|++|+++.+.
T Consensus 257 ~~~~~a~~~G~~~-~~~~~g~-~V~~G~~la~i~dp 290 (332)
T 2qj8_A 257 SDQLKSPSPGIFE-PRCSVMD-EVEQGDVVGVLHPM 290 (332)
T ss_dssp GGEEECSSSEEEE-ECSCTTC-EECTTCEEEEEECT
T ss_pred ceEEeCCCCeEEE-EeCCCCC-EeCCCCEEEEEECC
Confidence 3457899999885 7788999 89999999999763
No 142
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=22.86 E-value=21 Score=29.08 Aligned_cols=20 Identities=40% Similarity=0.826 Sum_probs=14.7
Q ss_pred ccccccccCcCCccchHHHH
Q psy16142 388 RSLISFRRPVKFSEESNDVK 407 (426)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~ 407 (426)
+|.|-|.||+||.+-...++
T Consensus 42 KRIiqf~RPvkf~dl~qkv~ 61 (111)
T 2c60_A 42 RRIIAFSRPVKYEDVEHKVT 61 (111)
T ss_dssp EEEEEECSSCCHHHHHHHHH
T ss_pred eEEEecCCCccHHHHHHHHH
Confidence 47799999999975544443
No 143
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=22.82 E-value=59 Score=28.43 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=23.4
Q ss_pred cceeeecccccCCccccCcchhhhhccc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDK 123 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK 123 (426)
.|.-.+.+++.||.|++||.|+++.-++
T Consensus 92 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 92 KGEGFTSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp TTTTEEESCCCCSEECSEEEEEEECHHH
T ss_pred CCCccEEEEeCCCEEcCCCEEEEECHHH
Confidence 5666788999999999999999886543
No 144
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=22.15 E-value=1e+02 Score=23.07 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhCCcccHHHHHHHHHHHHhhh
Q psy16142 305 LREQMNKALEKRGAKLSINDFIIKATALASRR 336 (426)
Q Consensus 305 lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~ 336 (426)
|++++....++. ..|+|.+|+.++..++.+
T Consensus 30 L~~~L~~~A~~~--grSlNaeIv~~Le~sl~~ 59 (69)
T 3qoq_A 30 MREQIAEVARSH--HRSMNSEIIARLEQSLLQ 59 (69)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHHHHH
Confidence 444454433333 579999999999999975
No 145
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=22.14 E-value=57 Score=28.58 Aligned_cols=32 Identities=9% Similarity=0.244 Sum_probs=26.1
Q ss_pred cChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhh
Q psy16142 223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKA 259 (426)
Q Consensus 223 asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~ 259 (426)
+.|.+++.++++|||++.- . .-.|+.+|+..+
T Consensus 68 ~d~~a~~~l~~~Gid~s~h-~----ar~l~~~d~~~~ 99 (173)
T 4etm_A 68 PHEGTQEILRREGISFDGM-L----ARQVSEQDLDDF 99 (173)
T ss_dssp CCHHHHHHHHHTTCCCTTC-C----CCBCCHHHHHHC
T ss_pred CCHHHHHHHHHCCccccCC-c----cccCCHhhcCCC
Confidence 5899999999999999876 3 236888998764
No 146
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=22.04 E-value=15 Score=33.07 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=23.7
Q ss_pred cceeeecccccCCccccCcchhhhhccc
Q psy16142 96 MGTIVSWAKKEGDKLNEGDLLAEIETDK 123 (426)
Q Consensus 96 ~g~i~~w~v~vGd~Ve~gd~L~~vetdK 123 (426)
.|..-.++++.||.|++||+|+++.-++
T Consensus 114 ~G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 114 KGEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CCccceEEEeCcCEEcCCCEEEEECHHH
Confidence 4667789999999999999999886543
No 147
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=21.77 E-value=62 Score=27.09 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=25.4
Q ss_pred ecCCCeEEEEEee-cCCCccccCCcEEEEEEcCCc
Q psy16142 129 ETPEEGYLAKILV-PAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 129 ~a~~~G~v~~i~v-~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..+.-|.|..+.+ +.|+ .|..|++|+.|+....
T Consensus 31 a~~~lG~i~~v~lp~vG~-~V~~g~~l~~vEs~K~ 64 (128)
T 1onl_A 31 AQDALGDVVYVELPEVGR-VVEKGEAVAVVESVKT 64 (128)
T ss_dssp HHHHHCSEEEEECBCTTC-EECTTCEEEEEEESSB
T ss_pred HhhcCCCceEEEecCCCC-EEeCCCEEEEEEEcce
Confidence 3455576767766 8999 7999999999986543
No 148
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=21.40 E-value=63 Score=27.01 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=25.6
Q ss_pred ecCCCeEEEEEee-cCCCccccCCcEEEEEEcCCc
Q psy16142 129 ETPEEGYLAKILV-PAGSKDVPIGKLVCIIVENES 162 (426)
Q Consensus 129 ~a~~~G~v~~i~v-~~G~~~v~vG~~l~~i~~~~~ 162 (426)
..+.-|.|..+.+ +.|+ .|..|++|+.|+....
T Consensus 32 a~~~lG~i~~v~lp~vG~-~V~~g~~l~~vEs~K~ 65 (128)
T 3a7l_A 32 AQELLGDMVFVDLPEVGA-TVSAGDDCAVAESVKA 65 (128)
T ss_dssp HHHHHCSEEEEECCCTTC-EECTTCEEEEEEESSC
T ss_pred HhccCCceEEEEecCCCC-EEeCCCEEEEEEecce
Confidence 3455576777766 8999 8999999999986543
No 149
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=20.83 E-value=34 Score=34.80 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=25.7
Q ss_pred CcccceeeecccccCCccccCcchhhhhcc
Q psy16142 93 TMEMGTIVSWAKKEGDKLNEGDLLAEIETD 122 (426)
Q Consensus 93 s~d~g~i~~w~v~vGd~Ve~gd~L~~vetd 122 (426)
-+|.+....+++++||.|++||+|++|=++
T Consensus 376 ~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~ 405 (440)
T 2tpt_A 376 TIDYSVGFTDMARLGDQVDGQRPLAVIHAK 405 (440)
T ss_dssp CCCSSCEEESCCCTTCEEBTTBCSEEEEES
T ss_pred CCCcCcCeeEeccCCCEECCCCeEEEEecC
Confidence 456677889999999999999999998654
No 150
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=20.59 E-value=24 Score=28.27 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=15.3
Q ss_pred ccccccccCcCCccchHHHHH
Q psy16142 388 RSLISFRRPVKFSEESNDVKT 408 (426)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~ 408 (426)
+|.|-|.||+||.+-...+++
T Consensus 31 kRIi~f~RPv~f~el~~kv~~ 51 (100)
T 2npt_B 31 KRILQFPRPVKLEDLRSKAKI 51 (100)
T ss_dssp EEEEEECSSCCHHHHHHHHHH
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 477999999999765544443
No 151
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=20.49 E-value=33 Score=34.94 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=24.7
Q ss_pred CcccceeeecccccCCccccCcchhhhh
Q psy16142 93 TMEMGTIVSWAKKEGDKLNEGDLLAEIE 120 (426)
Q Consensus 93 s~d~g~i~~w~v~vGd~Ve~gd~L~~ve 120 (426)
-+|.+....+++++||.|++||+|++|=
T Consensus 374 ~id~~~Gi~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 374 DIDLAVGIVLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp CCCTTCEEEESCCTTCEECTTSEEEEEE
T ss_pred CCCCCCceEEecCCcCEeCCCCeEEEEe
Confidence 4566788899999999999999999885
No 152
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=20.34 E-value=1.5e+02 Score=21.80 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhhcc
Q psy16142 303 IKLREQMNKALEKRGAKLSINDFIIKATALASRRVP 338 (426)
Q Consensus 303 ~~lr~~~~~~~~~~~~~~s~~~~~~ka~~~al~~~p 338 (426)
..|.+++....... ..|+|.+|+.++..++....
T Consensus 16 ~eLh~~l~~~A~~~--GrSlN~~Iv~~L~~~l~~~~ 49 (64)
T 1nla_A 16 REVLDLVRKVAEEN--GRSVNSEIYQRVMESFKKEG 49 (64)
T ss_dssp HHHHHHHHHHHHHH--TSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence 34555555444433 47999999999999987654
No 153
>2l17_A Synarsc, arsenate reductase; alpha/beta sandwich, oxidoreductase; NMR {Synechocystis} PDB: 2l18_A 2l19_A
Probab=20.24 E-value=66 Score=26.72 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=25.2
Q ss_pred cChHHHHHHHHcCCCCcCccCCCCCCCcccchhhhhh
Q psy16142 223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKA 259 (426)
Q Consensus 223 asP~aR~lA~e~gIDl~~v~~gtG~~GrI~~~DV~~~ 259 (426)
+.|.+.+.++++|||++.. . .-.++..|+..+
T Consensus 45 ~~~~a~~~l~e~Gid~s~~-~----sr~l~~~~~~~~ 76 (134)
T 2l17_A 45 VHPTAIAMMEEVGIDISGQ-T----SDPIENFNADDY 76 (134)
T ss_dssp CCHHHHHHHHTTTCCCSSC-C----CCCGGGCCGGGC
T ss_pred CCHHHHHHHHHcCCCcccC-c----cccCChHHhccC
Confidence 6899999999999999765 2 335777777653
No 154
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=20.21 E-value=33 Score=34.72 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=25.9
Q ss_pred CcccceeeecccccCCccccCcchhhhhcc
Q psy16142 93 TMEMGTIVSWAKKEGDKLNEGDLLAEIETD 122 (426)
Q Consensus 93 s~d~g~i~~w~v~vGd~Ve~gd~L~~vetd 122 (426)
.+|.+....+++++||.|++||+|++|=++
T Consensus 363 ~id~~~Gi~~~~k~g~~v~~g~~l~~i~~~ 392 (423)
T 2dsj_A 363 PIDHGVGVYLLKKPGDRVERGEALALVYHR 392 (423)
T ss_dssp CCCTTCEEEESCCTTCEECTTSEEEEEEEC
T ss_pred CCCcCcCeeeeccCCCEeCCCCeEEEEEeC
Confidence 456678889999999999999999998654
Done!