RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16142
(426 letters)
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human,
dihydrolipoamide dehydrogenase, dihydrolipoyl
dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Length = 229
Score = 222 bits (568), Expect = 4e-71
Identities = 63/231 (27%), Positives = 93/231 (40%), Gaps = 26/231 (11%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
+ +P+LSPTME G IV W KKEG+ ++ GD L EIETDKA + + ++G LAKI+V G
Sbjct: 6 ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 65
Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPA 204
SK++ +G L+ +IVE D + P P + P P +
Sbjct: 66 SKNIRLGSLIGLIVEEGEDWKHVE-------------IPKDVGPPPPVSKPSEPRPSPEP 112
Query: 205 PSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGA 264
PV + G R SP A+ + + LD S +G G T D K +
Sbjct: 113 QISIPVKKEHIPGTLRFRLSPAARNILEKHSLDASQG-TATGPRGIFTKEDALKLVQLKQ 171
Query: 265 VAAPSKSAKPTANGP------------FTDLPVSGVRGVIAKRLLQSKQVI 303
++S A P + V + +
Sbjct: 172 TGKITESRPTPAPTATPTAPSPLQATSGPSYPRPVIPPVSTPGQPNAVGTL 222
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 228 bits (583), Expect = 1e-70
Identities = 87/368 (23%), Positives = 147/368 (39%), Gaps = 60/368 (16%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
LP + + G IV W K GD++NE D+L E++ DKA + +P +G + +ILVP G
Sbjct: 5 FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 64
Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPA 204
+ +G+ + + D + K
Sbjct: 65 TV-ATVGQTLITL-----------DAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAV 112
Query: 205 PSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGA 264
P + RV A P ++ A EKG+D+ + G+G G + D+ GA
Sbjct: 113 APNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLV-QGTGKNGRVLKEDIDAFLAGGA 171
Query: 265 VAAPSKSAKPTANGPF-----------TDLPVSGVRGVIAKRLLQSKQVI---------- 303
AP+ + + A T +SG+R IAK ++ SK
Sbjct: 172 KPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEAD 231
Query: 304 -----KLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVD 356
R++ ++G KL+ +++KA A R P N+S D I + H +
Sbjct: 232 VTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYN 291
Query: 357 VSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEG 416
+ +A +TD+GL P++ AD+K + + + ++ LA KA++G
Sbjct: 292 IGIAADTDRGLLVPVIKHADRKPIFAL-------------------AQEINELAEKARDG 332
Query: 417 KLQPHEFQ 424
KL P E +
Sbjct: 333 KLTPGEMK 340
Score = 48.0 bits (115), Expect = 4e-06
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALP----ALS 91
KG + +I+N+G G + F+ +IN P+ IL +G ++++ + + VA P +LS
Sbjct: 340 KGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLS 396
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central
beta-sheet surrounded by five alpha-helices; 8.80A {Homo
sapiens}
Length = 239
Score = 185 bits (471), Expect = 2e-56
Identities = 85/173 (49%), Positives = 108/173 (62%), Gaps = 37/173 (21%)
Query: 267 APSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ---------------VIKLREQMNK 311
P + P G FTD+P+S +R VIA+RL+QSKQ V+ +R+++NK
Sbjct: 1 GPGMA--PVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNK 58
Query: 312 ALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPI 371
LE +K+S+NDFIIKA+ALA +VPEANSSW DT IR+ H VDVSVAV+T GL TPI
Sbjct: 59 ILEG-RSKISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPI 117
Query: 372 VFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
VF+A KG+ I +NDV +LA KA+EGKLQPHEFQ
Sbjct: 118 VFNAHIKGVETI-------------------ANDVVSLATKAREGKLQPHEFQ 151
Score = 84.6 bits (210), Expect = 6e-19
Identities = 31/48 (64%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 40 GGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLV-REGNDRVA 86
GGT +ISNLGMFGIKNFSAIINPPQACILA+G+ +LV +
Sbjct: 152 GGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFD 199
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex; pyruvate dehydrogenase kinase 3,
lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo
sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C*
2q8i_B* 1fyc_A
Length = 128
Score = 162 bits (411), Expect = 5e-49
Identities = 62/99 (62%), Positives = 75/99 (75%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
V LPALSPTM MGT+ W KK G+KL+EGDLLAEIETDKAT+GFE EEGYLAKILVP G
Sbjct: 30 VLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEG 89
Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAP 183
++DVP+G +CIIVE E+D++AF D++ P
Sbjct: 90 TRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQVP 128
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid
dehydrogenase; NMR {Homo sapiens}
Length = 108
Score = 161 bits (409), Expect = 5e-49
Identities = 59/98 (60%), Positives = 77/98 (78%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
V LP+LSPTM+ GTI W KKEGDK+NEGDL+AE+ETDKAT+GFE+ EE Y+AKILV G
Sbjct: 10 VPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEG 69
Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASA 182
++DVPIG ++CI V D+ AFK++ D+ A+G S+
Sbjct: 70 TRDVPIGAIICITVGKPEDIEAFKNYTLDSSAASGPSS 107
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl
domain, 2-oxoacid dehydrogenase, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 148 bits (377), Expect = 2e-44
Identities = 40/86 (46%), Positives = 56/86 (65%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
+ +P+LSPTME G IV W KKEG+ ++ GD L EIETDKA + + ++G LAKI+V G
Sbjct: 10 ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 69
Query: 145 SKDVPIGKLVCIIVENESDVAAFKDF 170
SK++ +G L+ +IVE D
Sbjct: 70 SKNIRLGSLIGLIVEEGEDWKHVSGP 95
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate
dehydrogenase complex,...; pyruvate dehydrogenase kinase
isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo
sapiens} PDB: 3crl_C*
Length = 87
Score = 133 bits (336), Expect = 1e-38
Identities = 57/80 (71%), Positives = 67/80 (83%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
V LPALSPTM MGT+ W KK G+KL+EGDLLAEIETD AT+GFE EEGYLAKILVP G
Sbjct: 8 VLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEG 67
Query: 145 SKDVPIGKLVCIIVENESDV 164
++DVP+G +CIIVE E+D+
Sbjct: 68 TRDVPLGTPLCIIVEKEADI 87
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics,
PSI-2, protein structure initiative; 2.00A
{Mycobacterium tuberculosis}
Length = 250
Score = 117 bits (296), Expect = 9e-31
Identities = 32/179 (17%), Positives = 67/179 (37%), Gaps = 44/179 (24%)
Query: 265 VAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQ---------------VIKLREQM 309
++ + A+ PV GV +A+++ S + +++LR++
Sbjct: 1 MSLAA--ARGGVGAGPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRF 58
Query: 310 NKALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTF----IREYHSVDVSVAVNTDK 365
A +++ ++ +A + NS+W D+ + + V + T++
Sbjct: 59 VSA----APEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATER 114
Query: 366 GLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
GL P+V DA K ++ ++ V L A+EG L P E +
Sbjct: 115 GLLVPVVTDAQDKNTREL-------------------ASRVAELITGAREGTLTPAELR 154
Score = 64.2 bits (157), Expect = 8e-12
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALP----ALS 91
+G T ++SN G G+ + +IN P+A IL +G++ R V G + VA P
Sbjct: 154 RGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCV 210
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide
acetyltransferase; 2-oxoacid dehydrogenases
acyltransferase; 2.50A {Listeria monocytogenes}
Length = 256
Score = 105 bits (265), Expect = 2e-26
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 37/178 (20%)
Query: 265 VAAPSKSAKPTANGPFTD--LPVSGVRGVIAKRLLQSKQ---------------VIKLRE 307
++ + P D +P++GVR IAK + SKQ +++ R
Sbjct: 1 MSLKAAMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRN 60
Query: 308 QMNKALEKR-GAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKG 366
+ + +K G L+ F IKA A A + P+ NS+W I E+ ++++S+A+
Sbjct: 61 AVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDL 120
Query: 367 LFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
L+ P++ +AD+K + I + ++ LA KA+ GKL + +
Sbjct: 121 LYVPVIKNADEKSIKGI-------------------AREISELAGKARNGKLSQADME 159
Score = 46.5 bits (111), Expect = 6e-06
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQR-LVREG 81
+GGT ++++ G FG IIN PQA IL V S+ +R ++ +
Sbjct: 159 EGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDD 202
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex...; cubic core, HOMO trimer,
oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus}
PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Length = 262
Score = 104 bits (262), Expect = 7e-26
Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 36/185 (19%)
Query: 257 SKASKAGAVAAPSKSAKPTAN-GPFTDLPVSGVRGVIAKRLLQSKQV------------- 302
K P +KP G PV G + K + + ++
Sbjct: 7 PPPPKPKDRTIPIPISKPPVFIGKDRTEPVKGFHKAMVKTMSAALKIPHFGYCDEVDLTE 66
Query: 303 -IKLREQMNKALEKRGAKLSINDFIIKATALASRRVPEANSSWQD--TFIREYHSVDVSV 359
+KLRE++ RG KLS F +KA +L + P N+S + I S ++ +
Sbjct: 67 LVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGI 126
Query: 360 AVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQ 419
A++T++GL P V + + + +I + ++ L G+L
Sbjct: 127 AMDTEQGLIVPNVKNVQIRSIFEI-------------------ATELNRLQKLGSAGQLS 167
Query: 420 PHEFQ 424
++
Sbjct: 168 TNDLI 172
Score = 53.4 bits (129), Expect = 3e-08
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVA 86
GGT ++SN+G G +I PP+ I A+G++ V
Sbjct: 172 IGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVC 219
Score = 31.8 bits (73), Expect = 0.32
Identities = 10/42 (23%), Positives = 11/42 (26%)
Query: 191 AAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAA 232
PPPP PK P P P K +
Sbjct: 4 EIMPPPPKPKDRTIPIPISKPPVFIGKDRTEPVKGFHKAMVK 45
Score = 27.6 bits (62), Expect = 8.2
Identities = 8/35 (22%), Positives = 8/35 (22%)
Query: 177 AAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
P PP PK P P P
Sbjct: 1 GHAEIMPPPPKPKDRTIPIPISKPPVFIGKDRTEP 35
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase;
2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB:
1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A
1dpc_A
Length = 243
Score = 98.8 bits (247), Expect = 5e-24
Identities = 37/166 (22%), Positives = 65/166 (39%), Gaps = 40/166 (24%)
Query: 278 GPFTDLPVSGVRGVIAKRLLQSKQVI---------------KLREQMNKALEKRGAKLSI 322
G ++P++ + + A L +S + R EK G KL++
Sbjct: 13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTV 72
Query: 323 NDFIIKATALASRRVPEANSSW----QDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKK 378
++KA A + +P+ NSS Q ++Y V + AV+T GL P++ + D+K
Sbjct: 73 LPLLLKACAYLLKELPDFNSSLAPSGQALIRKKY--VHIGFAVDTPDGLLVPVIRNVDQK 130
Query: 379 GLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
L+ + + + LA KA+ KL Q
Sbjct: 131 SLLQL-------------------AAEAAELAEKARSKKLGADAMQ 157
Score = 51.8 bits (125), Expect = 9e-08
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGND---RVALP-ALS 91
+G +IS+LG G F+ I+N P+ IL V S + V +G R+ LP +LS
Sbjct: 157 QGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLS 213
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A
{Thermoplasma acidophilum dsm 1728}
Length = 224
Score = 95.4 bits (238), Expect = 6e-23
Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 32/162 (19%)
Query: 276 ANGPFTDLPVSGVRGVIAKRLLQSKQVIKLREQMN-----------KALEKRGAKLSIND 324
A G L + G+R +I ++ ++KQ++ M + + R K+++
Sbjct: 2 APGREEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKARNRKVTVTG 61
Query: 325 FIIKATALASRRVPEANSSWQDT--FIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVD 382
F+ + ++ P N+ + +T ++ +AV+T GL ++ DAD+K +V+
Sbjct: 62 FLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVE 121
Query: 383 ISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
I S ++ A++A+E KLQ E Q
Sbjct: 122 I-------------------SAEISDKASRARENKLQLDEVQ 144
Score = 52.3 bits (126), Expect = 5e-08
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVR 79
+ T +I+N+G G + IIN P+ IL V + +R R
Sbjct: 144 QDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRILEREGR 184
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent
acyltransferase, CAT-like, alpha and beta (2 L mixed
beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP:
c.43.1.1 PDB: 1e2o_A 1c4t_A
Length = 233
Score = 88.4 bits (220), Expect = 2e-20
Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 35/157 (22%)
Query: 284 PVSGVRGVIAKRLLQSKQ---------------VIKLREQMNKALEKR-GAKLSINDFII 327
P++ +R +A+RLL++K ++ LR+Q +A EKR G +L F +
Sbjct: 8 PMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYV 67
Query: 328 KATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDS 387
KA A +R PE N+S + ++ DVS+AV+T +GL TP++ D D G+ DI
Sbjct: 68 KAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADI---- 123
Query: 388 RSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
E +K LA K ++GKL +
Sbjct: 124 --------------EKK-IKELAVKGRDGKLTVEDLT 145
Score = 43.4 bits (103), Expect = 5e-05
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 40 GGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALP----ALS 91
GG +I+N G+FG + IINPPQ+ IL + ++ R + LP ALS
Sbjct: 146 GGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALS 201
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma
acidophilum}
Length = 77
Score = 60.7 bits (148), Expect = 3e-12
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
LP + + G IV W KEGD + + L E+ TDK T+ +P G + KIL G
Sbjct: 4 FKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREG 63
Query: 145 SKDVPIGKLVCII 157
VP+G + I
Sbjct: 64 QV-VPVGSTLLQI 75
Score = 25.6 bits (57), Expect = 9.3
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIET 121
G IV +EG + G L +I+T
Sbjct: 53 GKIVKILYREGQVVPVGSTLLQIDT 77
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl
acid bearing, human BCKD, experimental DATA, average
structure, transferase; NMR {Homo sapiens} SCOP:
b.84.1.1 PDB: 1k8o_A
Length = 93
Score = 60.0 bits (146), Expect = 8e-12
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
T+ W KEGD +++ D + E+++DKA++ + +G + K+ +GK +
Sbjct: 19 VTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVD 77
Query: 157 I-VENESDVAA 166
I E D+
Sbjct: 78 IETEALKDLEH 88
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid;
HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB:
1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Length = 219
Score = 62.0 bits (150), Expect = 2e-11
Identities = 9/85 (10%), Positives = 21/85 (24%)
Query: 314 EKRGAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVF 373
+ K I A PE + +D + + SV V ++ ++
Sbjct: 47 TVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTETFSSLW 106
Query: 374 DADKKGLVDISNDSRSLISFRRPVK 398
+ ++
Sbjct: 107 SEYHDDFRQFLHIYSQDVACYGENL 131
Score = 42.0 bits (98), Expect = 1e-04
Identities = 6/50 (12%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALP 88
+S +F + V ++ + D+V +P
Sbjct: 139 IENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGK--YYTQGDKVLMP 186
>3cla_A Type III chloramphenicol acetyltransferase; transferase
(acyltransferase); HET: CLM; 1.75A {Escherichia coli}
SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A
1qca_A*
Length = 213
Score = 61.2 bits (148), Expect = 4e-11
Identities = 12/116 (10%), Positives = 31/116 (26%), Gaps = 10/116 (8%)
Query: 303 IKLREQMNKALEKR-GAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAV 361
+ + + + + +I A A + E + +D + + SVD V
Sbjct: 30 LTSKIDITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTV 89
Query: 362 NTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGK 417
+ + + + S++ E L + +
Sbjct: 90 FHQETETFSALSCPYSSDIDQFMVNYLSVM---------ERYKSDTKLFPQGVTPE 136
Score = 35.4 bits (81), Expect = 0.019
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 32 LLAGLRKKGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALP 88
L ++IS L +F+ + + ++++ ++ DR+ LP
Sbjct: 128 LFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAK--YQQEGDRLLLP 182
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 57.3 bits (139), Expect = 5e-11
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
+ P ++ GT+ +W KK G+ + +L+ +IETDK M +G +A+I+ G
Sbjct: 4 IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63
Query: 145 SKDVPIGKLVCIIVEN 160
V G+L+ + E
Sbjct: 64 D-TVLSGELLGKLTEG 78
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 56.9 bits (138), Expect = 8e-11
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
+ +P L ++ T+ +W KK GD + ++L EIETDK + +G L +L G
Sbjct: 5 ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64
Query: 145 SKDVPIGKLVCIIVE 159
+ V +++ + E
Sbjct: 65 T-TVTSRQILGRLRE 78
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding
domain, ultrafast folding, homologues,; NMR {Pyrobaculum
aerophilum} PDB: 1w4j_A 1w4k_A
Length = 62
Score = 54.3 bits (131), Expect = 4e-10
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 217 GGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTA 276
G V A P A+RLA E G+DLS + G+G G IT D+ + ++ A A A
Sbjct: 1 GSREVAAMPAARRLAKELGIDLSKV-KGTGPGGVITVEDVKRYAEETAKATAPAPAPKAV 59
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto
acid dehydrogenase...; E3_binding domain; NMR {Homo
sapiens}
Length = 70
Score = 50.1 bits (120), Expect = 2e-08
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 206 SPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAV 265
S Q+ G + A+P +RLA E + LS + GSG G I D+ +
Sbjct: 2 SSGSSGHQEIKGR-KTLATPAVRRLAMENNIKLSEV-VGSGKDGRILKEDILNYLEKQTG 59
Query: 266 AAPSKSAKPTA 276
A S +
Sbjct: 60 AILPPSGPSSG 70
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 50.9 bits (122), Expect = 2e-08
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
G + + ++G + G AE+E K M E G + K + G+ + G +V
Sbjct: 26 GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAV-LEAGCVVAR 83
Query: 157 I-VENESDVAAFKDF 170
+ +++ S V
Sbjct: 84 LELDDPSKVHPSGPS 98
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of
pyruvate; dehydrogenase, multienzyme complex,
oxidoreductase; HET: TDP; 2.0A {Geobacillus
stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A
1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Length = 49
Score = 47.5 bits (114), Expect = 7e-08
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 218 GTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGA 264
RV A P ++ A EKG+D+ + G+G G + D+ GA
Sbjct: 4 NRRVIAMPSVRKYAREKGVDIRLV-QGTGKNGRVLKEDIDAFLAGGA 49
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 48.5 bits (116), Expect = 9e-08
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 82 NDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV 141
ND L + S G + + ++G + G AE+E K M E G + K +
Sbjct: 3 NDPTVLRSPSA----GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIK 57
Query: 142 PAGSKDVPIGKLVCII-VENESDV 164
G+ + G +V + +++
Sbjct: 58 RPGAV-LEAGCVVARLELDDLEHH 80
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex,...; protein-protein interaction,
redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB:
1zwv_A
Length = 58
Score = 47.6 bits (114), Expect = 1e-07
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 218 GTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSK 270
G + A+P + LA E + LS + GSG G I D+ + +
Sbjct: 5 GRKTLATPAVRNLAMENNIKLSEV-VGSGKDGRILKEDILNYLEKQTLEHHHH 56
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 6e-07
Identities = 68/423 (16%), Positives = 118/423 (27%), Gaps = 153/423 (36%)
Query: 64 QACILAVGSLSQRLVREGNDRVALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDK 123
I L+R D A + + I+ W + +
Sbjct: 185 GDLIKFSAETLSELIRTTLD--AEKVFTQGLN---ILEWLENPSN--------------- 224
Query: 124 ATMGFETPEEGYLAKILVPAGSKDVP-IG--KLVCIIVENESDVAAFKDFKDDAPPAAGA 180
TP++ YL I + S P IG +L +V + + + A G
Sbjct: 225 ------TPDKDYLLSIPI---S--CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 181 SAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLD-LS 239
S + A A A + + + S + K + L
Sbjct: 274 SQ------GLVTA-------VAIAETDS-------------WESFFV---SVRKAITVLF 304
Query: 240 SIGA-GSGLFGSIT-SADLSKASKAGAVAAPSKSAKPTANGPFTDLPVSGVRGVIAKRLL 297
IG + + + + + S PS P+ + L
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPS--------------PMLSISN------L 344
Query: 298 QSKQVIKLREQMNKALEKRGAKLSI------NDFII-----------------KA-TALA 333
+QV + N L G ++ I + ++ KA + L
Sbjct: 345 TQEQVQDYVNKTNSHL-PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 334 SRRVPEANSSWQDTFIRE-------YHS---VDVSVAVNTD----------KGLFTPIVF 373
R+P S + F +HS V S +N D K + P V+
Sbjct: 404 QSRIP--FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-VY 460
Query: 374 D-ADKKGLVDISND-SRSLIS--FRRPV------KFSE---------ESNDVKTLAAKAK 414
D D L +S S ++ R PV +F ++ + L + K
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 415 EGK 417
+G
Sbjct: 521 DGT 523
Score = 32.3 bits (73), Expect = 0.39
Identities = 31/149 (20%), Positives = 43/149 (28%), Gaps = 53/149 (35%)
Query: 46 SNLGMFGIKNFSAII--NPPQACILAVGSLSQRLVREGNDRVALPALSPTMEMGTIVSWA 103
G F I I+ NP I G +R+ RE M +
Sbjct: 1655 DTYG-FSI---LDIVINNPVNLTIHFGGEKGKRI-REN-----------YSAM----IFE 1694
Query: 104 KKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILV------PAGSKDVPIGKLVCII 157
KL + EI + F + + +L PA L +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKG-----LLSATQFTQPA---------LT--L 1738
Query: 158 VENESDVAAFKDFKDDA--PPA---AGAS 181
+E AAF+D K P AG S
Sbjct: 1739 ME----KAAFEDLKSKGLIPADATFAGHS 1763
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase
E2 component; protein-protein complex, oxidoreductase;
HET: FAD; 2.09A {Thermus thermophilus}
Length = 41
Score = 43.6 bits (104), Expect = 2e-06
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 221 VYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASK 261
+ A P A++LA E G+ + + GSG G + D+ ++
Sbjct: 1 MLAVPAARKLARELGIPIEEV-PGSGPLGRVRVEDVRAYAE 40
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia
coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A
2btg_A 2bth_A 2cyu_A
Length = 51
Score = 41.9 bits (99), Expect = 7e-06
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 216 SGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAG 263
SP +RL AE LD S+I G+G+ G +T D+ K
Sbjct: 5 EEQNNDALSPAIRRLLAEHNLDASAI-KGTGVGGRLTREDVEKHLAKA 51
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; misfolded dimer, acyltransferase,
glycolysis; NMR {Escherichia coli}
Length = 85
Score = 42.7 bits (101), Expect = 1e-05
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVC 155
+ + K GDK+ L +E DKA+M P G + ++ V G K V G L+
Sbjct: 10 IVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLI- 67
Query: 156 IIVENESDVAAFKDFKDD 173
+I E E A K +
Sbjct: 68 MIFEVEGAAPAAAPAKQE 85
Score = 32.7 bits (75), Expect = 0.035
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 92 PTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEE 133
P G + GDK+ G L+ E + A ++
Sbjct: 43 PAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPAAAPAKQ 84
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex,
oxidoreductase; HET: FAD NAD; 1.80A {Thermus
thermophilus}
Length = 40
Score = 41.0 bits (97), Expect = 1e-05
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKA 259
A P A+RL EKG+ + + G+GL G I D+ +
Sbjct: 2 AMPAAERLMQEKGVSPAEV-QGTGLGGRILKEDVMRH 37
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI-
protein structure initiative, midwest center for
structural genomics; 2.30A {Bacteroides
thetaiotaomicron}
Length = 217
Score = 44.4 bits (104), Expect = 2e-05
Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 15/111 (13%)
Query: 316 RGAKLSINDFIIKATALASRRVPEANSSWQ-DTFIREYHSVDVSVAV-NTDKGLFTPIVF 373
+ A S + A A+ +PE D + Y ++D+ + + G F F
Sbjct: 46 KAAGQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKIKENGKFFTTRF 105
Query: 374 DADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
+F + + + + + +
Sbjct: 106 PYHN-----------DFDTFYQEAR--LIIDAIPEDGDPYAAENEEVADGD 143
Score = 35.1 bits (80), Expect = 0.025
Identities = 6/53 (11%), Positives = 13/53 (24%), Gaps = 8/53 (15%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQAC---ILAVGSLSQRLVREGNDRVALP 88
G + +S + + +L G R+ +P
Sbjct: 143 DYGLILLSATPDLYFTSITGTQEKRSGNNYPLLNAGK-----AIIREGRLVMP 190
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 41.1 bits (97), Expect = 3e-05
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 105 KEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157
GD + D L +ETDKATM G + ++ V G K + G L+ ++
Sbjct: 24 NVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVV 75
Score = 32.6 bits (75), Expect = 0.030
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 92 PTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKA 124
P G + K GDK++EG L+ +E +
Sbjct: 48 PAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGT 80
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase
E2 component; protein-protein complex, oxidoreductase;
HET: FAD; 1.94A {Thermus thermophilus}
Length = 40
Score = 38.6 bits (91), Expect = 8e-05
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKA 259
A+P +RLA E G+DL+ + G+GL G IT D+ +A
Sbjct: 2 AAPSIRRLARELGVDLTRL-RGTGLAGRITEEDVRRA 37
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 39.9 bits (94), Expect = 9e-05
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 105 KEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157
K GDK+ L +E DKA+M P G + ++ V G K V G L+ I
Sbjct: 23 KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIF 74
Score = 32.2 bits (74), Expect = 0.038
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 92 PTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKA 124
P G + GDK+ G L+ E + A
Sbjct: 47 PAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGA 79
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB:
1iyv_A
Length = 79
Score = 39.9 bits (94), Expect = 9e-05
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 105 KEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157
K GD + L +E+ KA+M +P+ G + + V G K + G + +
Sbjct: 21 KTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIEL 72
Score = 32.2 bits (74), Expect = 0.039
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 92 PTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKA 124
P+ + G + S + K GDKL EGD + E+E
Sbjct: 45 PSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAG 77
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 41.1 bits (96), Expect = 8e-04
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 161 ESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
D + ++ A A A PA P AAA P P AAPA + +
Sbjct: 91 TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141
Score = 40.7 bits (95), Expect = 9e-04
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 152 KLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
K + + A + K++AP A++ P A AP AA A P
Sbjct: 86 KEIYYTPDPSELAAKEEPAKEEAPAPTPAASAPAPAA-AAPAPVAAAAPAAAAAEIADEP 144
Query: 212 SQKTSGGTRVYASPLAKRLA 231
+ + + A L K L
Sbjct: 145 VKASLLLHVLVAHKLKKSLD 164
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 41.1 bits (96), Expect = 8e-04
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 165 AAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQ 213
+ +D+ P A++ A P A A P P A + P+
Sbjct: 90 YDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAA 138
Score = 41.1 bits (96), Expect = 8e-04
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 161 ESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
+ + + A ++ +APA P AA P P A A PV
Sbjct: 91 DVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQ 141
Score = 40.3 bits (94), Expect = 0.001
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 159 ENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGG 218
++ ++ + +D P A+A + AA P P AAPAP+P
Sbjct: 83 KDAKEIYYDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQD 142
Query: 219 TRVYASPLAKRLAAEK 234
V A+ + + L A+K
Sbjct: 143 APVTATDVIRALVAQK 158
Score = 39.1 bits (91), Expect = 0.003
Identities = 18/60 (30%), Positives = 21/60 (35%)
Query: 172 DDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLA 231
+ A +A P AAAP P P A PA P T + A L K L
Sbjct: 105 AASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVTATDVIRALVAQKLKKELT 164
Score = 39.1 bits (91), Expect = 0.003
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 158 VENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSP 207
+E+E + DA PAA +APA P A AP P A +P
Sbjct: 95 IEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144
Score = 38.8 bits (90), Expect = 0.004
Identities = 12/53 (22%), Positives = 19/53 (35%)
Query: 157 IVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTP 209
I + + + A +A A+ A P A A P P A+ P+
Sbjct: 88 IYYDVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPV 140
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 40.0 bits (94), Expect = 0.002
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
G ++ G K+ +G L + K +P EG + K+ V + L+
Sbjct: 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LEGDDLILE 716
Query: 157 I 157
I
Sbjct: 717 I 717
Score = 31.5 bits (72), Expect = 0.57
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 94 MEM-------GTIVSWAKKEGDKLNEGDLLAEIE 120
ME GT+ + L DL+ EIE
Sbjct: 685 METVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718
>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR
{Artemisia vulgaris}
Length = 108
Score = 37.1 bits (85), Expect = 0.002
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 151 GKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPS--PT 208
GK C + S A+ +P PP +PPPP +P
Sbjct: 43 GKESCFCYFDCSKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSP 102
Query: 209 PVPSQ 213
P PS
Sbjct: 103 PPPST 107
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 38.3 bits (88), Expect = 0.004
Identities = 24/159 (15%), Positives = 42/159 (26%), Gaps = 13/159 (8%)
Query: 170 FKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKR 229
D A + + PPPP + A + S + + ASP A
Sbjct: 9 LSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPS 68
Query: 230 LAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSA----KPTANGPFTDLPV 285
G G F S+++A + A A + L V
Sbjct: 69 ---------PGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLV 119
Query: 286 SGVRGVIAKRLLQSKQVIKLREQMNKALEKRGAKLSIND 324
+ + K++ + + E L +
Sbjct: 120 IDEPHTDWAKYFKGKKIHGEIDIKVEQAEFSDLNLVAHA 158
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 38.8 bits (91), Expect = 0.004
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVC 155
G GD + GD + IE K M + G + KIL G V G LV
Sbjct: 1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDM-VEAGDLVA 1233
Query: 156 IIV 158
+IV
Sbjct: 1234 VIV 1236
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding
protein, E3BD, protein binding; 1.55A {Homo sapiens}
PDB: 2f5z_K
Length = 64
Score = 34.8 bits (79), Expect = 0.004
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 213 QKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSK 270
+ G R SP A+ + + LD S +G G T D K + +
Sbjct: 2 EHIPGTLRFRLSPAARNILEKHSLDASQG-TATGPRGIFTKEDALKLVQLKQTGKILE 58
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 36.4 bits (84), Expect = 0.005
Identities = 11/48 (22%), Positives = 14/48 (29%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRV 221
P G + PA + P + AP S GT V
Sbjct: 21 MPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGTSV 68
Score = 32.2 bits (73), Expect = 0.17
Identities = 8/47 (17%), Positives = 9/47 (19%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTR 220
+ G P P PAP Q G
Sbjct: 19 SHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAG 65
Score = 32.2 bits (73), Expect = 0.18
Identities = 9/52 (17%), Positives = 12/52 (23%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
++G P+ P S P Q GG Y
Sbjct: 8 HHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQG 59
Score = 30.2 bits (68), Expect = 0.60
Identities = 8/55 (14%), Positives = 12/55 (21%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAK 228
G+ P A ++ P P + G Y S
Sbjct: 13 GLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGTS 67
Score = 30.2 bits (68), Expect = 0.66
Identities = 7/73 (9%), Positives = 16/73 (21%), Gaps = 1/73 (1%)
Query: 164 VAAFKDFKDDAPPAAGASAPAPPPPKVA-AAPPPPPPKAAPAPSPTPVPSQKTSGGTRVY 222
+ + + + + P A A + AP SG +
Sbjct: 1 MGSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGG 60
Query: 223 ASPLAKRLAAEKG 235
+ +
Sbjct: 61 YGSAGTSVTLQLD 73
Score = 29.1 bits (65), Expect = 1.6
Identities = 9/49 (18%), Positives = 13/49 (26%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVY 222
+ AP + A + + T V Q G R Y
Sbjct: 32 GRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSAGTSVTLQLDDGSGRTY 80
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 37.4 bits (86), Expect = 0.006
Identities = 15/52 (28%), Positives = 19/52 (36%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
+ +A + A P V P PPP APA P S R+ P
Sbjct: 27 SVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGP 78
Score = 35.9 bits (82), Expect = 0.020
Identities = 15/58 (25%), Positives = 15/58 (25%), Gaps = 4/58 (6%)
Query: 172 DDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPA----PSPTPVPSQKTSGGTRVYASP 225
D APP A A PP V P S P G AS
Sbjct: 47 DPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASA 104
Score = 33.6 bits (76), Expect = 0.11
Identities = 8/51 (15%), Positives = 12/51 (23%), Gaps = 2/51 (3%)
Query: 179 GASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKR 229
G+S + P P+ S T S + P
Sbjct: 2 GSSHHHHHHS--SGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAP 50
Score = 33.2 bits (75), Expect = 0.18
Identities = 16/104 (15%), Positives = 25/104 (24%), Gaps = 3/104 (2%)
Query: 173 DAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAA 232
+ P + +A A PV + +P A
Sbjct: 6 HHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPP--PAPAAGNPPD 63
Query: 233 EKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTA 276
D G G T++ L+ A + G P A
Sbjct: 64 TVTGDSVLQRILRGPTGPGTTS-LAPAVRYGRQPGPEAPASAPP 106
Score = 29.0 bits (64), Expect = 3.5
Identities = 12/48 (25%), Positives = 15/48 (31%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRV 221
A P P+ A+ PP +A P PVP V
Sbjct: 84 TSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEV 131
Score = 28.6 bits (63), Expect = 3.9
Identities = 5/48 (10%), Positives = 6/48 (12%), Gaps = 3/48 (6%)
Query: 172 DDAPPAAGASAPAPPPP---KVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
D P + P P P
Sbjct: 62 PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAG 109
Score = 28.6 bits (63), Expect = 4.7
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS 212
P G ++ AP P P P +AP + VP
Sbjct: 77 GPTGPGTTSLAPAVR-YGRQPGPEAPASAPPAAGRAVPG 114
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 37.6 bits (86), Expect = 0.007
Identities = 10/52 (19%), Positives = 14/52 (26%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
A A P A P P + PA P ++ + P
Sbjct: 316 EALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEP 367
Score = 36.0 bits (82), Expect = 0.022
Identities = 14/55 (25%), Positives = 16/55 (29%)
Query: 171 KDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
A SAPA AA P A P+ VP+ G S
Sbjct: 311 TAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSV 365
Score = 35.6 bits (81), Expect = 0.025
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRL 230
A A+ AP P P AA + S + + V +P A+RL
Sbjct: 326 EAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPVEEVAPAPAAQRL 382
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 35.8 bits (82), Expect = 0.008
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 177 AAGASAPAPPPPKVAAAPPPPPPKAAPAPSPT 208
AA A+ PPP + PPP P PSP+
Sbjct: 108 AANATVSMPPPSSSPPSSVMPPP-VMPPPSPS 138
Score = 33.5 bits (76), Expect = 0.047
Identities = 8/32 (25%), Positives = 9/32 (28%)
Query: 181 SAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS 212
A + PP P P P PS
Sbjct: 107 VAANATVSMPPPSSSPPSSVMPPPVMPPPSPS 138
Score = 33.5 bits (76), Expect = 0.047
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 176 PAAGASAPAPPPPKVAAAPPPPPPKAAPAPS 206
A + PP ++ PPP P+PS
Sbjct: 108 AANATVSMPPPSSSPPSSVMPPPVMPPPSPS 138
Score = 26.9 bits (59), Expect = 6.6
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 186 PPPKVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
+ PPP + P +P S
Sbjct: 108 AANATVSMPPPSSSPPSSVMPPPVMPPPSPS 138
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 37.3 bits (87), Expect = 0.010
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
G++ G+ + L E K + P +G + ++ V G + G L+
Sbjct: 1086 GSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IATGDLLIE 1144
Query: 157 IVE 159
I +
Sbjct: 1145 IEK 1147
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 36.9 bits (85), Expect = 0.012
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGT 219
+P G +A A P PP AAP P P ++K T
Sbjct: 7 SPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPT 52
Score = 33.8 bits (77), Expect = 0.11
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
AP + G A A P P A +PT P K + + P
Sbjct: 4 APTSPGTPGVAAATQA-ANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPP 54
Score = 33.8 bits (77), Expect = 0.12
Identities = 15/60 (25%), Positives = 20/60 (33%)
Query: 176 PAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKG 235
G + PAPP A P P K +PTP + + L + L K
Sbjct: 20 ANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREHLRDIKA 79
Score = 28.8 bits (64), Expect = 4.8
Identities = 11/43 (25%), Positives = 13/43 (30%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
A AA P P K P PP P A + +
Sbjct: 31 ALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATLREH 73
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 36.1 bits (84), Expect = 0.020
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
G I G +N GD+L IE K ++G +A++LV AG + + L+ +
Sbjct: 1104 GVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-IDAKDLLAV 1162
Query: 157 I 157
Sbjct: 1163 Y 1163
Score = 32.7 bits (75), Expect = 0.25
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 94 MEM-------GTIVSWAKKEGDKLNEGDLLAEIE 120
ME GTI K GD+++ DLLA
Sbjct: 1131 METAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164
>2g5d_A GNA33; hydrolase, beta barrel; 1.95A {Neisseria gonorrhoeae fa
1090} SCOP: b.52.1.4 PDB: 2g6g_A
Length = 422
Score = 36.1 bits (82), Expect = 0.021
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 181 SAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
S P P + P P P P+ T V
Sbjct: 6 SIQTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAV 41
Score = 33.8 bits (76), Expect = 0.10
Identities = 8/38 (21%), Positives = 8/38 (21%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
P S P P A T VP
Sbjct: 9 TFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVYTVVP 46
Score = 31.1 bits (69), Expect = 0.74
Identities = 4/38 (10%), Positives = 4/38 (10%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
P A P P
Sbjct: 7 IQTFPQPDTSVINGPDRPAGIPDPAGTTVAGGGAVYTV 44
Score = 30.7 bits (68), Expect = 1.00
Identities = 6/33 (18%), Positives = 7/33 (21%)
Query: 180 ASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS 212
P V P P PA +
Sbjct: 7 IQTFPQPDTSVINGPDRPAGIPDPAGTTVAGGG 39
Score = 29.5 bits (65), Expect = 2.1
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 180 ASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS 212
S P+ + P + A P P
Sbjct: 3 QSRSIQTFPQPDTSVINGPDRPAGIPDPAGTTV 35
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 35.0 bits (80), Expect = 0.028
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGG 218
A A+ A AP PP PPP A P P P + G
Sbjct: 156 AATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG 200
Score = 33.1 bits (75), Expect = 0.12
Identities = 9/51 (17%), Positives = 10/51 (19%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
P P P PP P P+ G P
Sbjct: 168 YPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPP 218
Score = 31.9 bits (72), Expect = 0.28
Identities = 12/52 (23%), Positives = 14/52 (26%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
A AA A+A P PP +P P G P
Sbjct: 151 AAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
Score = 31.5 bits (71), Expect = 0.37
Identities = 10/45 (22%), Positives = 12/45 (26%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGG 218
A P G P+ AA S P+Q G
Sbjct: 128 AGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR 172
Score = 31.2 bits (70), Expect = 0.48
Identities = 9/45 (20%), Positives = 11/45 (24%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGT 219
A+A A A PP + P P G
Sbjct: 147 RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP 191
Score = 30.8 bits (69), Expect = 0.70
Identities = 12/51 (23%), Positives = 13/51 (25%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
A A+A A A PP P P P G P
Sbjct: 148 GTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
Score = 30.8 bits (69), Expect = 0.74
Identities = 8/44 (18%), Positives = 9/44 (20%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGG 218
+A A A P P P P G
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGM 188
Score = 30.4 bits (68), Expect = 0.79
Identities = 11/45 (24%), Positives = 12/45 (26%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGT 219
G P PP + A P P P P GT
Sbjct: 167 QYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGT 211
Score = 30.4 bits (68), Expect = 0.86
Identities = 8/38 (21%), Positives = 10/38 (26%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
P G A A + A P P P+
Sbjct: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
Score = 30.4 bits (68), Expect = 0.96
Identities = 12/38 (31%), Positives = 13/38 (34%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
P GA P P PP PP P TP+
Sbjct: 177 PPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMG 214
Score = 30.0 bits (67), Expect = 1.3
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTP 209
APP P P + PP + P P P
Sbjct: 183 APPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPP 218
Score = 28.5 bits (63), Expect = 3.4
Identities = 7/51 (13%), Positives = 11/51 (21%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
P + A A+ P P P + + P
Sbjct: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPP 193
Score = 28.5 bits (63), Expect = 4.3
Identities = 12/46 (26%), Positives = 12/46 (26%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTR 220
PP G AP P PP P P G R
Sbjct: 176 PPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMR 221
Score = 28.1 bits (62), Expect = 4.4
Identities = 8/45 (17%), Positives = 9/45 (20%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGG 218
P + AAA AP P G
Sbjct: 136 GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
Score = 27.7 bits (61), Expect = 7.0
Identities = 6/52 (11%), Positives = 10/52 (19%), Gaps = 2/52 (3%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
P+ P AA + P + +P
Sbjct: 135 GGPSQQVMTPQGRGT--VAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP 184
Score = 27.3 bits (60), Expect = 8.2
Identities = 5/38 (13%), Positives = 9/38 (23%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS 212
P A A P + P+ + +
Sbjct: 120 MPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAA 157
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 35.6 bits (81), Expect = 0.033
Identities = 8/52 (15%), Positives = 13/52 (25%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
A P + PP AA P + + Q+ +
Sbjct: 20 ATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQ 71
Score = 34.0 bits (77), Expect = 0.097
Identities = 8/52 (15%), Positives = 12/52 (23%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
P +A ++ P P TP Q + S
Sbjct: 29 FMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80
Score = 34.0 bits (77), Expect = 0.11
Identities = 7/40 (17%), Positives = 9/40 (22%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQ 213
P PP P A + +P Q
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQ 50
Score = 34.0 bits (77), Expect = 0.11
Identities = 8/46 (17%), Positives = 12/46 (26%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGT 219
A P + A PP P AA + + +
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPS 55
Score = 33.6 bits (76), Expect = 0.14
Identities = 7/52 (13%), Positives = 9/52 (17%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
A P P A P + A+P
Sbjct: 68 QLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAP 119
Score = 33.3 bits (75), Expect = 0.17
Identities = 3/52 (5%), Positives = 6/52 (11%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
P P + P + +
Sbjct: 40 MSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLV 91
Score = 33.3 bits (75), Expect = 0.20
Identities = 5/52 (9%), Positives = 7/52 (13%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
PP A+A P +
Sbjct: 30 MPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMN 81
Score = 32.9 bits (74), Expect = 0.24
Identities = 6/45 (13%), Positives = 10/45 (22%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGG 218
A P+ G P + + VP +
Sbjct: 52 AVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAY 96
Score = 32.5 bits (73), Expect = 0.31
Identities = 5/52 (9%), Positives = 11/52 (21%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
A+ P + P + P + + G +
Sbjct: 14 LQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPA 65
Score = 32.5 bits (73), Expect = 0.33
Identities = 3/52 (5%), Positives = 6/52 (11%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
P + P T + +
Sbjct: 43 GQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN 94
Score = 32.1 bits (72), Expect = 0.37
Identities = 5/52 (9%), Positives = 7/52 (13%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
+ G P P + S V
Sbjct: 41 SYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92
Score = 32.1 bits (72), Expect = 0.45
Identities = 9/52 (17%), Positives = 11/52 (21%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
P +A P V P + A PS R
Sbjct: 87 NVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQL 138
Score = 32.1 bits (72), Expect = 0.46
Identities = 5/52 (9%), Positives = 9/52 (17%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
A PP + Q T+ ++
Sbjct: 36 AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHN 87
Score = 31.7 bits (71), Expect = 0.51
Identities = 9/52 (17%), Positives = 9/52 (17%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
P A P A PP A A G
Sbjct: 8 VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQ 59
Score = 31.7 bits (71), Expect = 0.51
Identities = 5/54 (9%), Positives = 9/54 (16%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLA 227
+ P P P + + P+A
Sbjct: 64 PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117
Score = 31.7 bits (71), Expect = 0.58
Identities = 11/55 (20%), Positives = 13/55 (23%), Gaps = 3/55 (5%)
Query: 174 APPAAGASAPAPPPPKVAAAPP---PPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
P AAG S P A P A + TS +
Sbjct: 34 DPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNV 88
Score = 30.6 bits (68), Expect = 1.2
Identities = 5/52 (9%), Positives = 7/52 (13%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
+ P P P P + G
Sbjct: 79 SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130
Score = 30.6 bits (68), Expect = 1.4
Identities = 7/52 (13%), Positives = 11/52 (21%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
A A PP + P+Q+ A+
Sbjct: 27 AQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT 78
Score = 30.2 bits (67), Expect = 1.7
Identities = 6/46 (13%), Positives = 8/46 (17%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGT 219
P A P P + P + G
Sbjct: 78 TSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123
Score = 30.2 bits (67), Expect = 1.8
Identities = 6/52 (11%), Positives = 9/52 (17%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
PA + P+ P GT +
Sbjct: 62 LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ 113
Score = 29.4 bits (65), Expect = 3.1
Identities = 2/52 (3%), Positives = 5/52 (9%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
+ P + + P
Sbjct: 51 GAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVP 102
Score = 29.0 bits (64), Expect = 3.6
Identities = 5/43 (11%), Positives = 9/43 (20%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
P P + P + + A P +
Sbjct: 97 MQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLY 139
Score = 29.0 bits (64), Expect = 4.1
Identities = 10/56 (17%), Positives = 13/56 (23%), Gaps = 2/56 (3%)
Query: 173 DAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAK 228
D + P P P TP+ Q+ Y P A
Sbjct: 74 DQATTSMNDMHLHNVP--LVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAA 127
Score = 27.9 bits (61), Expect = 8.0
Identities = 4/52 (7%), Positives = 7/52 (13%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
+ P A PV + +
Sbjct: 67 EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118
Score = 27.9 bits (61), Expect = 8.3
Identities = 7/55 (12%), Positives = 10/55 (18%), Gaps = 3/55 (5%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPP---PPKAAPAPSPTPVPSQKTSGGTRVYASP 225
A G +A P P P P + +
Sbjct: 12 AQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 35.2 bits (82), Expect = 0.038
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 192 AAPPPPPPKAAPAPSPTPVP-SQKTSGGTRVYASPLAKRLAAEKGLDLSSIGAGSG 246
PPP A A P + S +T + + L + + A
Sbjct: 408 PNTQPPPAPAPHATLPRLLRASGRTPEAVQKLLEQGLRHSQDLAFLSMLNDIAAVP 463
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated
deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens}
PDB: 3rzu_A
Length = 211
Score = 34.3 bits (78), Expect = 0.041
Identities = 6/50 (12%), Positives = 11/50 (22%), Gaps = 4/50 (8%)
Query: 182 APAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGT----RVYASPLA 227
P P PP + P + + ++ V
Sbjct: 1 GPLGSSDCHTTVRPAKPPVVDRSLKPGALSNSESIPTIDGLRHVVVPGRL 50
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 34.9 bits (79), Expect = 0.051
Identities = 4/58 (6%), Positives = 9/58 (15%)
Query: 159 ENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
+ ++ A V+ +A K
Sbjct: 6 HHHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLE 63
Score = 29.9 bits (66), Expect = 1.7
Identities = 4/43 (9%), Positives = 10/43 (23%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
K+ A +P+ + +T+
Sbjct: 46 NEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETA 88
Score = 29.5 bits (65), Expect = 2.8
Identities = 6/60 (10%), Positives = 12/60 (20%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEK 234
A ++ A + ++ AS A + E
Sbjct: 23 ETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEA 82
Score = 28.0 bits (61), Expect = 7.5
Identities = 10/79 (12%), Positives = 19/79 (24%), Gaps = 4/79 (5%)
Query: 159 ENESDVAAFKDFKDDAPPAAGASAPAP----PPPKVAAAPPPPPPKAAPAPSPTPVPSQK 214
++ + F+ + P +GA+ A A
Sbjct: 11 HHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVAT 70
Query: 215 TSGGTRVYASPLAKRLAAE 233
S ++ A AE
Sbjct: 71 ASETASPASNEAATTETAE 89
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 34.9 bits (81), Expect = 0.054
Identities = 15/52 (28%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 191 AAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSIG 242
A P P P P + S + R A LA LA E L G
Sbjct: 453 APEADEPEPAPDSGPVPLVL-SGRDEQAMRAQAGRLADHLAREPRNSLRDTG 503
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic
protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A
2b8f_A 2b8g_A*
Length = 72
Score = 31.8 bits (73), Expect = 0.054
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
G + K GD++ +G +A +E+ K + G + ++ G V G ++
Sbjct: 8 GNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF-VNEGDVLLE 66
Query: 157 IVENE 161
+ +
Sbjct: 67 LSNST 71
>2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta
hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces
venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A
1mnq_A
Length = 319
Score = 34.2 bits (78), Expect = 0.064
Identities = 7/58 (12%), Positives = 12/58 (20%), Gaps = 1/58 (1%)
Query: 176 PAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAE 233
P + P +A +GG + L+ E
Sbjct: 61 PQFASPEACSERLDPVLLAGGPTDRAEGRAVLVGCTGTAANGGPHEFL-RLSTSFQEE 117
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 33.9 bits (77), Expect = 0.066
Identities = 15/101 (14%), Positives = 25/101 (24%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAE 233
P P P+ PP P P P P P K + K + +
Sbjct: 51 VQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESR 110
Query: 234 KGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKP 274
+ + T+A + + +P
Sbjct: 111 PASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQP 151
Score = 32.4 bits (73), Expect = 0.22
Identities = 14/107 (13%), Positives = 29/107 (27%)
Query: 173 DAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAA 232
D P P P + P P P AP P K + +
Sbjct: 44 DLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 103
Query: 233 EKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGP 279
K ++ + ++ + A+ + V + + + +
Sbjct: 104 VKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQ 150
Score = 32.4 bits (73), Expect = 0.22
Identities = 11/41 (26%), Positives = 13/41 (31%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQK 214
P PPP+ P P P P PV +K
Sbjct: 41 TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK 81
Score = 32.0 bits (72), Expect = 0.25
Identities = 10/42 (23%), Positives = 11/42 (26%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKT 215
A PPP V P P P P V +
Sbjct: 42 PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPK 83
Score = 30.8 bits (69), Expect = 0.68
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 180 ASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKT 215
+ PP+ PP P + P P P P P ++
Sbjct: 40 VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEA 75
Score = 30.8 bits (69), Expect = 0.69
Identities = 10/41 (24%), Positives = 11/41 (26%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQK 214
P + PA P A PPP P K
Sbjct: 33 QPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPK 73
Score = 30.5 bits (68), Expect = 0.87
Identities = 10/42 (23%), Positives = 12/42 (28%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKT 215
PA A PP P P P+ P P +
Sbjct: 40 VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK 81
Score = 29.7 bits (66), Expect = 1.4
Identities = 9/50 (18%), Positives = 13/50 (26%)
Query: 171 KDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTR 220
K P P P ++ A + T P + G R
Sbjct: 95 KVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPR 144
Score = 29.7 bits (66), Expect = 1.4
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQK 214
A P + A PPP P P P P P+P
Sbjct: 32 AQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP 72
Score = 29.7 bits (66), Expect = 1.5
Identities = 9/62 (14%), Positives = 18/62 (29%)
Query: 171 KDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRL 230
+ P + PK P P P K V ++ + + A+
Sbjct: 65 PEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLT 124
Query: 231 AA 232
++
Sbjct: 125 SS 126
Score = 29.3 bits (65), Expect = 2.1
Identities = 8/42 (19%), Positives = 11/42 (26%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKT 215
+ + PP P P+ P P P P
Sbjct: 36 SVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPV 77
Score = 28.1 bits (62), Expect = 4.2
Identities = 11/41 (26%), Positives = 12/41 (29%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQK 214
APA P P P A P P PV +
Sbjct: 22 VHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPE 62
Score = 28.1 bits (62), Expect = 4.5
Identities = 5/57 (8%), Positives = 6/57 (10%)
Query: 171 KDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLA 227
P P P P + A
Sbjct: 75 APVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAA 131
Score = 28.1 bits (62), Expect = 5.4
Identities = 9/39 (23%), Positives = 11/39 (28%)
Query: 173 DAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
+ P A + P P P P P P P
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEP 65
Score = 27.8 bits (61), Expect = 6.3
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQK 214
AP + P PPP+ P P P P +
Sbjct: 30 APAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPE 70
Score = 27.4 bits (60), Expect = 8.3
Identities = 7/41 (17%), Positives = 7/41 (17%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQK 214
A P P P P P P
Sbjct: 39 MVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVI 79
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.091
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 15/73 (20%)
Query: 293 AKRLLQSKQVI-KLREQMNKALEKRG-------------AKLSINDFIIKATALASRRVP 338
A RL Q + I K RE+ K L++ AK + ++ + + +
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK- 135
Query: 339 EANSSWQDTFIRE 351
N F ++
Sbjct: 136 INNRIADKAFYQQ 148
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 31.6 bits (72), Expect = 0.11
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
GTI K GDK+ GD L + K ++P++G + K+ G++ +
Sbjct: 23 GTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQ-ANRHTPLVE 81
Query: 157 IVENESD 163
E ESD
Sbjct: 82 FEEEESD 88
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 33.6 bits (75), Expect = 0.14
Identities = 19/111 (17%), Positives = 31/111 (27%)
Query: 169 DFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAK 228
DF P AP + + P A A S + ++ + R A P A+
Sbjct: 8 DFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPAR 67
Query: 229 RLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGP 279
R ++SS + K K+ A +
Sbjct: 68 RRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQD 118
Score = 30.1 bits (66), Expect = 1.8
Identities = 12/101 (11%), Positives = 23/101 (22%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAE 233
P A + AP + PP A P ++ +SP
Sbjct: 29 TPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEAPDI 88
Query: 234 KGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKP 274
+ L+ A ++ + +
Sbjct: 89 PACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQR 129
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 32.8 bits (75), Expect = 0.18
Identities = 15/47 (31%), Positives = 17/47 (36%)
Query: 176 PAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVY 222
PA P P P A PPPPPP+ P K + Y
Sbjct: 17 PAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAIIDDY 63
Score = 29.7 bits (67), Expect = 1.9
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 178 AGASAPAPPPPKVAAAPPPPPPKAAPA--PSPTPVPSQKTSGGTRVYASPLAKRLAAEKG 235
+ + +PP P A APPP PP A P+ P P + V + K+ A
Sbjct: 3 SNSQGQSPPVPFPAPAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQIKKNAIIDD 62
Query: 236 LDLSSIGAGSGLFGS 250
++S G G+ G
Sbjct: 63 YKVTSQVLGLGINGK 77
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 32.9 bits (75), Expect = 0.22
Identities = 16/127 (12%), Positives = 26/127 (20%)
Query: 163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVY 222
A P P ++ P
Sbjct: 315 TAEEMSAQLTGVLREVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEK 374
Query: 223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTD 282
+ A L + A S L ++ S + A + A +
Sbjct: 375 LTANEIVTALSVPLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVE 434
Query: 283 LPVSGVR 289
LP+ VR
Sbjct: 435 LPLMEVR 441
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 33.0 bits (76), Expect = 0.23
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 194 PPPPPPKAAPAPSPTPVP---SQKTSGGTRVYASPLAKRLAAEKGLDLSSIG 242
P + A PVP S +++ R A+ +A+ L DL+ +G
Sbjct: 431 APEREHRETTAHDGRPVPLVVSARSTAALRAQAAQIAELLERP-DADLAGVG 481
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, disease mutation,
nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo
sapiens}
Length = 94
Score = 30.4 bits (69), Expect = 0.26
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
G +V+ + K GD + EG + IE K + G + + AG
Sbjct: 34 GVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAG 81
Score = 28.1 bits (63), Expect = 1.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIE 120
GT+ S + GD + EGDLL E+E
Sbjct: 71 GTVKSVHCQAGDTVGEGDLLVELE 94
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 32.1 bits (72), Expect = 0.27
Identities = 12/49 (24%), Positives = 14/49 (28%)
Query: 170 FKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGG 218
P P P K A PP P K P P++ G
Sbjct: 54 IGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGK 102
Score = 27.5 bits (60), Expect = 7.8
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 185 PPPPKVAAAPPPPPPKAAPAPSPTPVPSQ 213
P P A P +AAP P+ + SQ
Sbjct: 13 PFPAPTAMWRPRRRRQAAPMPARNGLASQ 41
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead,
biocytin, transferase; NMR {Propionibacterium
freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 29.9 bits (68), Expect = 0.27
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
GT+ KEGD + G + +E K P +G + K+LV V G+ +
Sbjct: 17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIK 75
Query: 157 I 157
I
Sbjct: 76 I 76
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide
repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A
{Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3
b.26.1.2 PDB: 2fez_A*
Length = 388
Score = 32.4 bits (74), Expect = 0.30
Identities = 7/59 (11%), Positives = 8/59 (13%)
Query: 177 AAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKG 235
AA + A V R Y A
Sbjct: 256 RQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLH 314
Score = 32.4 bits (74), Expect = 0.30
Identities = 7/76 (9%), Positives = 17/76 (22%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAE 233
A A + +A+ A + R++ + + A
Sbjct: 266 AKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSANV 325
Query: 234 KGLDLSSIGAGSGLFG 249
+ G+
Sbjct: 326 SRHHAVIVDTGTNYVI 341
Score = 30.4 bits (69), Expect = 1.2
Identities = 5/56 (8%), Positives = 8/56 (14%)
Query: 176 PAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLA 231
P + + G A+ RL
Sbjct: 259 PLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLH 314
Score = 30.1 bits (68), Expect = 1.5
Identities = 6/62 (9%), Positives = 11/62 (17%)
Query: 177 AAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGL 236
A A + + + G A R+
Sbjct: 257 QQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDN 316
Query: 237 DL 238
D+
Sbjct: 317 DI 318
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 32.5 bits (74), Expect = 0.33
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 192 AAPPPPPPKAAPAPSPTPVP-SQKTSGGTRVYASPLAKRLAAEKGLDL 238
P PP A A P + S +T + + + +
Sbjct: 406 PNSRPAPPPAQHAALPRLLQASGRTLEAVQTLLEQGLRHSRDLAFVGM 453
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 31.8 bits (71), Expect = 0.36
Identities = 7/52 (13%), Positives = 12/52 (23%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
+ S P P + P+ + S Y+S
Sbjct: 268 NTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSN 319
Score = 29.9 bits (66), Expect = 1.6
Identities = 10/57 (17%), Positives = 12/57 (21%)
Query: 169 DFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
F D A P P S VP + TR +
Sbjct: 235 LFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETE 291
Score = 29.5 bits (65), Expect = 2.3
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
P + S + + P P S T + ++ + Y +
Sbjct: 257 PIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAG 307
Score = 29.1 bits (64), Expect = 2.7
Identities = 6/56 (10%), Positives = 13/56 (23%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKR 229
+ P + P TP + +G + +P +
Sbjct: 264 NFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYHAGMKSLNKAPYSSN 319
Score = 28.7 bits (63), Expect = 4.0
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
G+ +P P + P +PT + + ++P
Sbjct: 249 TNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTP 299
Score = 28.0 bits (61), Expect = 6.0
Identities = 6/56 (10%), Positives = 13/56 (23%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKR 229
P + + +P AP+ S+ S + +
Sbjct: 250 NRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVEYH 305
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural
genomics, structural genomics consortium, SGC; 1.80A
{Toxoplasma gondii}
Length = 413
Score = 31.9 bits (72), Expect = 0.39
Identities = 7/48 (14%), Positives = 15/48 (31%)
Query: 165 AAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS 212
++ + + A P + APP + A + V +
Sbjct: 365 PEYEQLRTELSAALPLYQTDGEPTREGGAPPSGTSQPDEAGAAEAVTA 412
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein;
HTLV-II matrix protein, retroviral matrix protein; NMR
{Human t-lymphotropic virus 2} SCOP: a.61.1.2
Length = 137
Score = 30.6 bits (68), Expect = 0.39
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS 212
+P A A P P P PPPPP A P P P+
Sbjct: 94 SPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPT 132
Score = 29.9 bits (66), Expect = 0.81
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTP 209
+ +AP P P PPPPPP + A P P
Sbjct: 93 VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPP 127
Score = 27.5 bits (60), Expect = 4.6
Identities = 10/32 (31%), Positives = 10/32 (31%)
Query: 184 APPPPKVAAAPPPPPPKAAPAPSPTPVPSQKT 215
P A P P P P P P P P
Sbjct: 93 VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHV 124
Score = 27.2 bits (59), Expect = 6.3
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQ 213
+ PAA P P PPP P P P P +Q
Sbjct: 96 SAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPTTTQ 135
>2gj7_F Glycoprotein E; FC receptor, low resolution, immune
system-virus-viral prote complex; HET: NAG BMA MAN GAL
FUC; 5.00A {Human herpesvirus 1} SCOP: b.1.1.1
Length = 401
Score = 32.0 bits (71), Expect = 0.41
Identities = 11/36 (30%), Positives = 12/36 (33%)
Query: 170 FKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAP 205
+ P GA P P V A P PP A
Sbjct: 365 VVEQPLPQRGADLAEPTHPHVGAPPHAPPTHGALRD 400
>3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F
1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H
2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H
2qbg_H 2qbi_H* 2qbk_H* 2qov_H ...
Length = 149
Score = 30.7 bits (70), Expect = 0.49
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 223 ASPLAKRLAAEKGLDLSS-IGAGSGLFGSITSADLSKASKA 262
A+ A+++ A + + ++S G LFGSI + D++ A A
Sbjct: 65 ANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTA 105
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 31.5 bits (70), Expect = 0.51
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 177 AAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLA 231
A + P V A+ PP+ P P Q + Y+ +R A
Sbjct: 3 AKAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQ-GTDQPYQYSQCTGRRKA 56
Score = 29.2 bits (64), Expect = 2.7
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS 212
P AS PP ++ PPP P
Sbjct: 13 NPNVNASNMYGPPQNMS-LPPPQTQTIQGTDQPYQYSQ 49
Score = 28.8 bits (63), Expect = 3.5
Identities = 5/41 (12%), Positives = 10/41 (24%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQK 214
P ++ PP P + P + +
Sbjct: 13 NPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTGR 53
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans}
SCOP: g.41.5.1
Length = 87
Score = 29.4 bits (66), Expect = 0.57
Identities = 5/32 (15%), Positives = 7/32 (21%)
Query: 176 PAAGASAPAPPPPKVAAAPPPPPPKAAPAPSP 207
P + P+ PP A
Sbjct: 1 PTSLEKLPSADVKGQDLYKTQPPRSDAQGGKA 32
>1sid_A Polyomavirus coat protein VP1; icosahedral virus; HET: SIA GAL BGC;
3.65A {Mouse polyomavirus} SCOP: b.121.6.1 PDB: 1sie_A*
Length = 383
Score = 31.2 bits (70), Expect = 0.65
Identities = 10/35 (28%), Positives = 11/35 (31%)
Query: 187 PPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRV 221
P + A P P PVP GG V
Sbjct: 2 PKRKAGVSKCETKCTKACPRPAPVPKLLIKGGMEV 36
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 31.0 bits (69), Expect = 0.67
Identities = 6/46 (13%), Positives = 9/46 (19%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTR 220
G P + + + PS G R
Sbjct: 345 TWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDWGTFR 390
Score = 31.0 bits (69), Expect = 0.69
Identities = 6/46 (13%), Positives = 9/46 (19%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTR 220
P + P + S + P G R
Sbjct: 335 PGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSFRPDSSGHGNIR 380
Score = 30.6 bits (68), Expect = 1.0
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGT 219
P +AG P P P A P P+ A + P + S GT
Sbjct: 314 PGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGT 358
Score = 30.6 bits (68), Expect = 1.2
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSG 217
P +AG P P P A P P+ A + S +S
Sbjct: 327 PGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSSGSSSF 369
Score = 30.2 bits (67), Expect = 1.4
Identities = 10/48 (20%), Positives = 15/48 (31%)
Query: 172 DDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGT 219
D G + +P P ++ P P S T P + G
Sbjct: 257 DSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSA 304
Score = 29.1 bits (64), Expect = 3.0
Identities = 14/46 (30%), Positives = 18/46 (39%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGT 219
P +AG P P P A P P+ A + P + S GT
Sbjct: 300 EPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGT 345
Score = 27.9 bits (61), Expect = 7.1
Identities = 8/51 (15%), Positives = 11/51 (21%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
G+ P P P P P + + G S
Sbjct: 280 NVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSA 330
Score = 27.5 bits (60), Expect = 9.9
Identities = 7/46 (15%), Positives = 10/46 (21%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGT 219
G P P P P P + + G+
Sbjct: 318 GTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGS 363
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 30.8 bits (68), Expect = 0.69
Identities = 11/39 (28%), Positives = 13/39 (33%)
Query: 181 SAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGT 219
+PA P P P A P + PSQ G
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGPP 40
Score = 28.5 bits (62), Expect = 3.5
Identities = 11/39 (28%), Positives = 13/39 (33%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS 212
GA+ P P P PPPPK P+
Sbjct: 20 GGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQI 58
Score = 28.5 bits (62), Expect = 3.7
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
PA GA+ A P + PP P +P+ Q+
Sbjct: 17 EPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQI 58
Score = 27.7 bits (60), Expect = 5.8
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
+P P PPPPK + + T VP + ++ +
Sbjct: 31 SPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEAS 82
Score = 27.7 bits (60), Expect = 6.3
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
P AG + P PK + PP P P TP K
Sbjct: 16 PEPAGGATPGATLPKSPSQLRKGPP-VPPPPKHTPSKEVKQE 56
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
structural genomics, NPPSFA; 1.55A {Pyrococcus
horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 28.7 bits (65), Expect = 0.70
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
G ++ + GD++ G L +E K +P +G + +ILV G
Sbjct: 14 GKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEG 61
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 30.9 bits (69), Expect = 0.80
Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 5/53 (9%)
Query: 174 APPAAGASAPAPPPPKVAAAPPP-----PPPKAAPAPSPTPVPSQKTSGGTRV 221
+AP+P P A P AA A P P G+
Sbjct: 16 IEGRHMPAAPSPAPAGAVAGGPAAGVPAAASGAAEAAMPLPAALPGALAGSHA 68
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase,
guanylyltransferase, complex, hydrolase, mRNA
processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Length = 461
Score = 30.9 bits (68), Expect = 0.84
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTP 209
A A G+ P P + A P + P +
Sbjct: 415 ANMAGGSGRPLPSQSQNATLSTSKPVHSQPPSNDKE 450
Score = 29.4 bits (64), Expect = 2.4
Identities = 9/43 (20%), Positives = 11/43 (25%)
Query: 171 KDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQ 213
+ AG S P A P + PS P
Sbjct: 411 DERRANMAGGSGRPLPSQSQNATLSTSKPVHSQPPSNDKEPKY 453
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 30.4 bits (68), Expect = 0.91
Identities = 9/44 (20%), Positives = 10/44 (22%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSG 217
A K PPP PK P + G
Sbjct: 49 GALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPG 92
Score = 28.8 bits (64), Expect = 3.3
Identities = 10/42 (23%), Positives = 12/42 (28%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKT 215
A A A P + P PP P+QK
Sbjct: 46 AALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKK 87
Score = 28.4 bits (63), Expect = 4.5
Identities = 8/40 (20%), Positives = 10/40 (25%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQK 214
A A A P + P K P +K
Sbjct: 43 QLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKK 82
Score = 27.3 bits (60), Expect = 9.3
Identities = 9/40 (22%), Positives = 10/40 (25%), Gaps = 3/40 (7%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQ 213
P P P P P+ P PSQ
Sbjct: 4 IPTQTFYGRRWRPAPV---QRYIPQPQPPAPPRRRRGPSQ 40
Score = 27.3 bits (60), Expect = 9.6
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 182 APAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTR 220
+ PPP P +K+ G R
Sbjct: 56 KQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKR 94
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 197
Score = 30.1 bits (68), Expect = 0.99
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 223 ASPLAKRLAAEKGLDLSS-IGAGSGLFGSITSADLSKASKA 262
A LA + G G +FGS+T+ DL K+
Sbjct: 114 AQQLAMVFQTVGAFKVKRKGGKGKLIFGSVTAQDLVDIIKS 154
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 30.7 bits (70), Expect = 1.0
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 185 PPPPKVAAAPPPPPPKAAPAPSPTP 209
P PP +A P KAAP
Sbjct: 376 PAPPIQVSAQPQAAQKAAPEVKTEE 400
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like
kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB:
2ou7_A* 3fc2_A* 3thb_A*
Length = 335
Score = 30.4 bits (69), Expect = 1.0
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 183 PAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQ 213
PAP P A P P A A P +
Sbjct: 2 PAPADPGKAGVPGVAAPGAPAAAPPAKEIPE 32
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved
unknown protein, structural genomics, PSI; NMR
{Rhodopseudomonas palustris} SCOP: a.282.1.1
Length = 130
Score = 29.3 bits (65), Expect = 1.1
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 173 DAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAP 205
D+ A+ A AP A P P A
Sbjct: 14 DSAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 27.8 bits (61), Expect = 3.3
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 176 PAAGASAPAPPPPKVAAAPPPPPPKAAPAPS 206
AA P AA P P+ APS
Sbjct: 16 AAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 295
Score = 30.1 bits (67), Expect = 1.2
Identities = 16/113 (14%), Positives = 29/113 (25%), Gaps = 1/113 (0%)
Query: 96 MGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVC 155
M +++ + E+ D E A +K+ G+
Sbjct: 174 MWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTA 233
Query: 156 IIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPT 208
E + D+ + + P +A P AAP T
Sbjct: 234 PAPEFTAAQPEVADWSEGVQVPSVP-IQQFPTEDWSAQPSTEDWSAAPTAQAT 285
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 30.1 bits (68), Expect = 1.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETD 122
G I K G ++ +GDLLAEI++
Sbjct: 41 GKITKLYVKLGQQVKKGDLLAEIDST 66
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 30.0 bits (68), Expect = 1.3
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETD 122
G + + + GDK+ + LL I+ +
Sbjct: 40 GQLKTLSVAIGDKVKKDQLLGVIDPE 65
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond formation;
3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB:
1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I
1vou_I 1vow_I 1voy_I 1vp0_I
Length = 146
Score = 29.1 bits (66), Expect = 1.5
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 227 AKRLAAE-KGLDLS-SIGAGSG-LFGSITSADLSKASKA 262
A+ LA+ G+ + S+ AG G ++G++T D++ +
Sbjct: 64 AEDLASRLNGVAVELSVRAGEGKIYGAVTHQDVANSLDQ 102
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 29.8 bits (67), Expect = 1.5
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 168 KDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKT 215
+D ++D P +P P P + P SP+P P Q +
Sbjct: 296 EDPEEDGSPD-PEPSPEPEPKPSLEPNTSLEREPRPNSSPSPSPGQAS 342
Score = 28.3 bits (63), Expect = 4.9
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 173 DAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTP 209
+ P+ + P+ ++P P P +A+ P P P
Sbjct: 313 EPKPSLEPNTSLEREPRPNSSPSPSPGQASETPHPRP 349
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin
fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A
4afr_A
Length = 367
Score = 30.0 bits (66), Expect = 1.7
Identities = 8/60 (13%), Positives = 12/60 (20%)
Query: 172 DDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLA 231
D + + P A PPP + + P A
Sbjct: 36 DYVGLGWLNAVSSQPYLVQALGLQPPPRRVDVDAAFRDAKGLHGHQPWVATPLPGQTVRA 95
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant,
metal binding, greek KEY barrel, oxidoreductase; 1.63A
{Mycobacterium tuberculosis} SCOP: b.1.8.1
Length = 208
Score = 29.4 bits (66), Expect = 1.8
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTP 209
+ P ++ P P +P P SP
Sbjct: 2 SSPQHASTVPGTTPSIWTGSPAPSGLSGHDEESPGA 37
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 29.4 bits (67), Expect = 2.0
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 100 VSWAKKEGDKLNEGDLLAEIE 120
+ ++G+ L ++ EIE
Sbjct: 73 SKFNVEDGEYLEGTGVIGEIE 93
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I
2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I
3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Length = 148
Score = 28.7 bits (65), Expect = 2.0
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 227 AKRLAAE-KGLDLS-SIGAGSG-LFGSITSADLSKASKA 262
A+RL + L L+ + AG ++GS+T+ D+++A
Sbjct: 65 AERLKEILENLTLTIPVRAGETKIYGSVTAKDIAEALSR 103
>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB:
1dx1_A 1qlx_A 1qlz_A
Length = 219
Score = 29.0 bits (64), Expect = 2.1
Identities = 8/45 (17%), Positives = 9/45 (20%), Gaps = 2/45 (4%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGG 218
G+ P P PP Q GG
Sbjct: 11 GWNTGGSRYPGQGSP--GGNRYPPQGGGGWGQPHGGGWGQPHGGG 53
Score = 28.7 bits (63), Expect = 2.8
Identities = 5/51 (9%), Positives = 8/51 (15%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASP 225
G P PS+ + V +
Sbjct: 55 GQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHVAGAA 105
Score = 27.5 bits (60), Expect = 7.3
Identities = 9/50 (18%), Positives = 11/50 (22%), Gaps = 2/50 (4%)
Query: 171 KDDAPPAAGASAPAP--PPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGG 218
K P G + P PP P + GG
Sbjct: 3 KKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGG 52
Score = 27.1 bits (59), Expect = 9.3
Identities = 6/44 (13%), Positives = 7/44 (15%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGG 218
+ PP P P P G
Sbjct: 21 GQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQ 64
>2v8t_A Manganese-containing pseudocatalase; manganese catalase,
oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A
2cwl_A
Length = 302
Score = 29.4 bits (65), Expect = 2.2
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 169 DFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAK 228
D++D GAS V PP P ++ +AK
Sbjct: 240 DYRDLGLIWKGASPEDGTEVVVVDGPPT----GGPVFDAGHDAAEFAPEFHPGELYEIAK 295
Query: 229 RLA 231
+L
Sbjct: 296 KLY 298
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 29.6 bits (67), Expect = 2.3
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 13/72 (18%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIE------TDKATMGFETPEEGYLAKILVPAGSKDVPI 150
G+IV + G + G L +E + +A P G + + G V
Sbjct: 611 GSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRA------PHAGVVKALYCSEGEL-VEE 663
Query: 151 GKLVCIIVENES 162
G + + EN++
Sbjct: 664 GTPLVELDENQA 675
Score = 27.6 bits (62), Expect = 9.1
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 94 MEM-------GTIVSWAKKEGDKLNEGDLLAEIETDKA 124
ME G + + EG+ + EG L E++ ++A
Sbjct: 638 MEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDENQA 675
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 29.7 bits (67), Expect = 2.4
Identities = 10/53 (18%), Positives = 14/53 (26%)
Query: 168 KDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTR 220
D + G + AP A P PP A P + +
Sbjct: 14 SPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDTRNEKLN 66
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 29.5 bits (66), Expect = 2.5
Identities = 14/50 (28%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAP----APSPTPVPSQKTSGGT 219
PP A P PP+ P PP+ P P P P Q
Sbjct: 388 YPPQGYAPPPQGYPPQ-GYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAA 436
Score = 29.1 bits (65), Expect = 3.3
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 173 DAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSP 207
P G PP P PP+ AP +P
Sbjct: 403 QGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAP 437
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 27.7 bits (62), Expect = 2.7
Identities = 7/23 (30%), Positives = 7/23 (30%)
Query: 177 AAGASAPAPPPPKVAAAPPPPPP 199
AG S PA V P
Sbjct: 88 IAGRSEPATLLQPVTIRESGPSS 110
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 29.5 bits (66), Expect = 2.8
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 184 APPPPKVAAAPPPPPPKAAPAPSPTPV 210
P P +A A P P PS V
Sbjct: 9 RPGNPLIAPASPLAPAHTEAVPSQVDV 35
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Shewanella
amazonensis} PDB: 3lwu_A*
Length = 368
Score = 29.1 bits (64), Expect = 3.1
Identities = 6/39 (15%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 99 IVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLA 137
+V + K G + D L + G
Sbjct: 300 MVEYLGKVGVPMKATDPLVNL-LRLDLYGTGEELTVLRL 337
>3m1c_A GH, envelope glycoprotein H; glycoprotein H, GH/GL, envelope
protein, HER simplex virus, disulfide bond, HOST cell
MEMB HOST endosome; HET: NAG XYL; 3.00A {Human
herpesvirus 2}
Length = 762
Score = 29.2 bits (64), Expect = 3.1
Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
Query: 163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVY 222
AA D + P A P APPP PP P P + +
Sbjct: 115 TFAAAPDREGLTFPRGDDGATERHPDGRRNAPPPGPPAGTP---RHPTTNLSIAHLHNAS 171
Query: 223 ASPL 226
+ L
Sbjct: 172 VTWL 175
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A,
chloroplastic; photosynthesis, electron transfer,
membrane proteins, large complexes; HET: CL1 PQN BCR LMU
LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E*
2wsf_E* 2o01_E* 3lw5_E*
Length = 143
Score = 28.0 bits (61), Expect = 3.2
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 177 AAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTP 209
A AS+ + P AAAP P P
Sbjct: 49 PAPASSSSKDSPAAAAAPDGATATKPKPPPIGP 81
Score = 26.9 bits (58), Expect = 8.4
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAP 203
A ++ S A P A A P PP P
Sbjct: 52 ASSSSKDSPAAAAAPDGATATKPKPPPIGP 81
Score = 26.9 bits (58), Expect = 9.6
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 182 APAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTR 220
A P P +++ P AAP + P G R
Sbjct: 45 AAEDPAPASSSSKDSPAAAAAPDGATATKPKPPPIGPKR 83
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition
state, activation helix, serine/threonine-PR kinase;
HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Length = 340
Score = 28.9 bits (65), Expect = 3.2
Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 182 APAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAEKGLDLSSI 241
+ + + P P S TP + + + A+ + +
Sbjct: 2 SQSKGKKRNPGLKIPKEAFEQPQTSSTPPRDLDSKACISIGNQNF--EVKADDLEPIMEL 59
Query: 242 GAGSG 246
G G+
Sbjct: 60 GRGAY 64
>3iys_A Major capsid protein VP1; avian, polyomavirus, APV, icosahedral
virus, virus; 11.30A {Budgerigar fledgling disease
polyomavi}
Length = 343
Score = 28.9 bits (64), Expect = 3.2
Identities = 7/30 (23%), Positives = 7/30 (23%)
Query: 197 PPPKAAPAPSPTPVPSQKTSGGTRVYASPL 226
P P VP GG V
Sbjct: 2 SQKGKGSCPRPQQVPRLLVKGGIEVLDVKS 31
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus
stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K
1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Length = 149
Score = 27.9 bits (63), Expect = 3.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 223 ASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKA 262
A L ++L + G G LFGSITS ++++ +A
Sbjct: 65 AKKLKEQLEKLTVTIPAKAGEGGRLFGSITSKQIAESLQA 104
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 28.7 bits (63), Expect = 3.4
Identities = 8/41 (19%), Positives = 11/41 (26%)
Query: 176 PAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
P SAP +PTP + T+
Sbjct: 169 PGEINSAPIATATPTTKPTAFASTMPTVTLTPTPTATTTTT 209
Score = 28.3 bits (62), Expect = 4.5
Identities = 7/46 (15%), Positives = 9/46 (19%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGT 219
A P A P P+PT +
Sbjct: 169 PGEINSAPIATATPTTKPTAFASTMPTVTLTPTPTATTTTTIPTAV 214
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.8
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 10/33 (30%)
Query: 150 IGKLVCIIVENESDVAAFKDFKDDAPPAAGASA 182
+ KL ++ + K + DD+ PA A
Sbjct: 22 LKKL-------QA---SLKLYADDSAPALAIKA 44
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI,
UW, emerald biostructures, ALS collaborative
crystallography; 2.05A {Ehrlichia chaffeensis}
Length = 300
Score = 28.6 bits (65), Expect = 3.9
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 100 VSWAKKEGDKLNEGDLLAEIE 120
KK+GD + L E
Sbjct: 86 YEIHKKDGDITGKNSTLVSGE 106
>3dqq_A Putative tRNA synthase; structural genomics, unknown function,
center for structural genomics of infecti diseases;
2.70A {Salmonella typhimurium}
Length = 421
Score = 28.6 bits (63), Expect = 4.0
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Query: 151 GKLVCII-VENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTP 209
G ++ NE + + DAP G S A + A ++A P
Sbjct: 193 GYRYAVLDALNERHLEIQGEVLRDAPLVTGGSGLAMGLARQWAKHGVSQARSAGYPLSGR 252
Query: 210 VPSQKTS 216
S
Sbjct: 253 AVVLSGS 259
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 28.8 bits (65), Expect = 4.1
Identities = 6/26 (23%), Positives = 6/26 (23%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPP 199
APA P PP
Sbjct: 4 ESVNPETRAPAAPGAPELREPPVAGG 29
Score = 28.0 bits (63), Expect = 7.5
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 181 SAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
+ + P A A P P P + VP
Sbjct: 2 TVESVNPETRAPAAPGAPELREPPVAGGGVP 32
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 26.7 bits (59), Expect = 4.1
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 194 PPPPPPKAAPAPSPTPVPSQKTSGGTRVYA 223
PP P P + V + + V A
Sbjct: 7 PPVPNPDYNSLKKGSLVKNLHMTEEVIVIA 36
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase,
transferase; 2.62A {Francisella tularensis subsp}
Length = 287
Score = 28.6 bits (65), Expect = 4.1
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 100 VSWAKKEGDKLNEGDLLAEIE 120
++W + K+ + E++
Sbjct: 77 ITWLYSDAQKVPANARIFELK 97
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 28.4 bits (63), Expect = 4.6
Identities = 9/46 (19%), Positives = 12/46 (26%), Gaps = 5/46 (10%)
Query: 163 DVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPT 208
D + + F A + P P P P S T
Sbjct: 275 DESWVRKFASGAQARHDGVSTLQMPS-----DTPQHPAETPEHSNT 315
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport,
vesicular trafficking, GTPase, LOWE syndr immunoglobulin
fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Length = 140
Score = 27.5 bits (61), Expect = 4.7
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 358 SVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGK 417
S+ ++ + +F + F +K ISN+ + F K ++ L A+ EG
Sbjct: 26 SLELSRREFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGY 85
Query: 418 LQPHE 422
L+P+E
Sbjct: 86 LEPNE 90
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 28.7 bits (63), Expect = 4.8
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 164 VAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYA 223
+ A ++ + + PPP+ ++P PP PK P P PS +
Sbjct: 27 LKACRNLGKNGLSNSSILLDKCPPPRPPSSPYPPLPKDKLNP---PTPSIYLENKRDAFF 83
Query: 224 SPLAKRL 230
PL +
Sbjct: 84 PPLHQFC 90
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism,
transferase, polymorphism, glycosyltransferase, pyridine
nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens}
PDB: 3lar_A
Length = 299
Score = 28.3 bits (64), Expect = 4.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 100 VSWAKKEGDKLNEGDLLAEIE 120
VSW EG KL +AE+
Sbjct: 73 VSWFLPEGSKLVPVARVAEVR 93
>3b4q_A Uncharacterized protein; APC90667.1, conserved protein domain,
structural genomics, PSI-2, protein structure
initiative; 1.55A {Corynebacterium diphtheriae
NCTC13129}
Length = 94
Score = 26.9 bits (58), Expect = 4.9
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 184 APPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTS 216
AP P V A P P A + +
Sbjct: 7 APTPRDVVANAPAPVQAAVAGAQEYAAQAGLNT 39
>3v39_A D-alanyl-D-alanine carboxypeptidase; peptidoglycan transpeptidase
fold, endopeptidase, serine MOD hepes buffer molecule,
hydrolase; HET: PGE; 1.45A {Bdellovibrio bacteriovorus}
Length = 418
Score = 28.2 bits (62), Expect = 5.2
Identities = 10/90 (11%), Positives = 20/90 (22%), Gaps = 6/90 (6%)
Query: 223 ASPLAKRLAAEKGLDLSSIGA--GSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPF 280
+A + D S I GSG + + + + S + +
Sbjct: 230 TEAFNAYIAGKMQADTSDIEFHNGSGNNEGSVAKPVYNEATCEMMIKVLYSLDKSLSAKG 289
Query: 281 TD----LPVSGVRGVIAKRLLQSKQVIKLR 306
D + V+
Sbjct: 290 YDLSDVMAVAAKDKASTVGSYGGVMAGSTT 319
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding,
cytoplasm, acetylation, cytoskeleton, actin-binding;
1.1A {Mus musculus}
Length = 26
Score = 25.0 bits (54), Expect = 5.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 183 PAPPPPKVAAAPPPPP 198
P PP P VA+ PPPPP
Sbjct: 3 PPPPLPGVASIPPPPP 18
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 28.5 bits (63), Expect = 5.4
Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 5/118 (4%)
Query: 165 AAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYAS 224
+ D A G + A P SP P+ T T S
Sbjct: 1498 SGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYS 1557
Query: 225 PLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASKAGAVAAPSKSAKPTANGPFTD 282
P + + S S + S TS S S + + +PS S + P +
Sbjct: 1558 PTSPSYSPTSP----SYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1610
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer,
hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A*
1r4k_A 1si2_A 1si3_A
Length = 861
Score = 28.6 bits (63), Expect = 5.4
Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 6/42 (14%)
Query: 176 PAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSG 217
+ PA PP PPPP A P P P TSG
Sbjct: 2 AMYSGAGPALAPP------APPPPIQGYAFKPPPRPDFGTSG 37
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural
genomics, NPPSFA, national project O structural and
functional analyses; 1.90A {Thermus thermophilus}
Length = 286
Score = 28.2 bits (64), Expect = 5.4
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 89 ALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIE 120
P + EG ++ EG +A +
Sbjct: 67 LADPRTA----FTPLVAEGARVAEGTEVARVR 94
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate
phosphoribosyltransferase, quinolinic acid, HELI pylori,
transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB:
2b7p_A* 2b7q_A*
Length = 273
Score = 27.8 bits (63), Expect = 5.7
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 100 VSWAKKEGDKLNEGDLLAEIE 120
K+ ++ D L EI
Sbjct: 60 CVQTIKDKERFKPKDALMEIR 80
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 28.3 bits (63), Expect = 6.0
Identities = 14/93 (15%), Positives = 22/93 (23%), Gaps = 12/93 (12%)
Query: 169 DFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVY------ 222
+F+ A G S P P V + + + Y
Sbjct: 79 EFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGTVSSNYDNYVFD 138
Query: 223 -ASPLAKRLAAEKGLDLSS---IGA--GSGLFG 249
+ K + I G+G FG
Sbjct: 139 IWKQYYPQPVEIKHDHVLDHYDIHEELGTGAFG 171
>3dbo_B Uncharacterized protein; toxin antitoxin complex, vapbc, structural
genomics, PSI-2, protein structure initiative; 1.76A
{Mycobacterium tuberculosis}
Length = 150
Score = 27.2 bits (60), Expect = 6.5
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 308 QMNKALEKRGAKLSINDFIIKATALA 333
++ L + G ++ IND I A A +
Sbjct: 99 RLRIHLAESGRRVRINDLWIAAVAAS 124
>1tzp_A Penicillin-insensitive murein endopeptidase; LAS enzyme,
metallopeptidase, peptidoglycan hydrolase; 1.40A
{Escherichia coli} SCOP: d.65.1.3 PDB: 1u10_A
Length = 255
Score = 27.7 bits (61), Expect = 6.8
Identities = 10/48 (20%), Positives = 13/48 (27%), Gaps = 9/48 (18%)
Query: 175 PPAAGASAPAPPPPKVA---------AAPPPPPPKAAPAPSPTPVPSQ 213
P + P PP PP P +P P+P
Sbjct: 198 PADSLECEDQPLPPSGDGCGAELQSWFEPPKPGTTKPEKKTPPPLPPS 245
>1oht_A CG14704 protein; peptidoglycan-recognition protein-LB isoform 2,
hydrolase; HET: TLA; 2.0A {Drosophila melanogaster}
SCOP: d.118.1.1
Length = 215
Score = 27.2 bits (60), Expect = 7.9
Identities = 7/27 (25%), Positives = 8/27 (29%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPK 200
P P P+ PP PK
Sbjct: 188 TAPVVPHVHPQAAAPQKPHQSPPAAPK 214
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel,
pyridin dicarboxylate, 5-phospho-alpha-D-ribose
1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Length = 320
Score = 27.6 bits (62), Expect = 8.0
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 89 ALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIE 120
L + + W ++GD L L +
Sbjct: 103 QLGGQVS----IEWHVQDGDTLTPNQTLCTLT 130
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 27.8 bits (62), Expect = 8.1
Identities = 6/39 (15%), Positives = 11/39 (28%)
Query: 176 PAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQK 214
P A + A PP + + +P +
Sbjct: 7 PDAYTESFGAHTIVKPAGPPRVGQPSWNPQRASSMPVNR 45
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 27.9 bits (62), Expect = 8.2
Identities = 7/54 (12%), Positives = 11/54 (20%), Gaps = 2/54 (3%)
Query: 173 DAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS--QKTSGGTRVYAS 224
P PP + A P + P + V +
Sbjct: 185 SLPEPVATIESFPPSLLLEAEPEGWFMRWVPYGGGAVLGDRLPPVPARPEVAIT 238
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures,
ssgcid, niaid, SBRI, UWPPG, glycosyltransferase,
transferase, structural genomics; 2.25A {Burkholderia
pseudomallei}
Length = 298
Score = 27.5 bits (62), Expect = 8.3
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 89 ALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIE 120
A+ P++E V W +EGD+++ + E+
Sbjct: 81 AVDPSIE----VDWRHREGDRMSADSTVCELR 108
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold
shock domain, ssDNA binding, DNA B protein; 2.80A {Homo
sapiens}
Length = 147
Score = 26.9 bits (59), Expect = 8.5
Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 8/73 (10%)
Query: 171 KDDAPPAAGASAPAPPPPKVA---AAPPPPPPKAAPAPSPTPVPSQKT-SGGTRVYASPL 226
+ PP + A P P + PSP P +T S R P+
Sbjct: 3 SEPPPPPQPPTHQASVGLLDTPRSRERSPSPLRGNVVPSPLPTRRTRTFSATVRASQGPV 62
Query: 227 A----KRLAAEKG 235
K KG
Sbjct: 63 YKGVCKCFCRSKG 75
>3t4n_B SNF1 protein kinase subunit beta-2; CBS domain, nucleotide binding,
cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces
cerevisiae} PDB: 3tdh_B* 3te5_B*
Length = 113
Score = 26.5 bits (58), Expect = 8.6
Identities = 7/35 (20%), Positives = 7/35 (20%)
Query: 165 AAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPP 199
A F D PP PP
Sbjct: 9 AVFTDPSVMERYYYTLDRQQSNTDTSWLTPPQLPP 43
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 27.6 bits (62), Expect = 8.7
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 179 GASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
G+ PPP+ + P P + P P+ +
Sbjct: 3 GSYQLLVPPPEALSKPLSVPTRLLLGPGPSNLA 35
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 25.9 bits (57), Expect = 9.0
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 180 ASAPAPPPPKVAAAPPPPPPKAAPAPSP 207
+ PK A PP A PS
Sbjct: 65 SENEKAVSPKKALLPPTVSLSATSGPSS 92
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 27.3 bits (60), Expect = 9.5
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
A + P P + + SP +P
Sbjct: 77 SRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIP 113
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 27.2 bits (61), Expect = 9.6
Identities = 9/44 (20%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPAPS-PTPVPSQKTS 216
PPA P P P P P S+ +
Sbjct: 4 LPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAAA 47
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Length = 689
Score = 27.6 bits (61), Expect = 9.9
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 177 AAGASAPAPPPPKVAAAPPPPPPKAAPA 204
G +A P P PP A
Sbjct: 566 KLGGTAKLQEPAPRPDTPKPPALSNDTA 593
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.376
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,496,583
Number of extensions: 413977
Number of successful extensions: 3121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2428
Number of HSP's successfully gapped: 416
Length of query: 426
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 330
Effective length of database: 4,021,377
Effective search space: 1327054410
Effective search space used: 1327054410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.2 bits)