RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16142
(426 letters)
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 101 bits (252), Expect = 9e-27
Identities = 61/87 (70%), Positives = 74/87 (85%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
V LPALSPTM MGT+ W KK G+KL+EGDLLAEIETDKAT+GFE EEGYLAKILVP G
Sbjct: 8 VLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEG 67
Query: 145 SKDVPIGKLVCIIVENESDVAAFKDFK 171
++DVP+G +CIIVE E+D++AF D++
Sbjct: 68 TRDVPLGTPLCIIVEKEADISAFADYR 94
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase
{Escherichia coli [TaxId: 562]}
Length = 233
Score = 88.1 bits (218), Expect = 1e-20
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 35/162 (21%)
Query: 279 PFTDLPVSGVRGVIAKRLLQSKQ---------------VIKLREQMNKALEKR-GAKLSI 322
+P++ +R +A+RLL++K ++ LR+Q +A EKR G +L
Sbjct: 3 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGF 62
Query: 323 NDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVD 382
F +KA A +R PE N+S + ++ DVS+AV+T +GL TP++ D D G+ D
Sbjct: 63 MSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMAD 122
Query: 383 ISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
I +K LA K ++GKL +
Sbjct: 123 I-------------------EKKIKELAVKGRDGKLTVEDLT 145
Score = 43.8 bits (103), Expect = 2e-05
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPALSPTM 94
GG +I+N G+FG + IINPPQ+ IL + ++ R + LP + +
Sbjct: 145 TGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLAL 200
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Escherichia coli [TaxId: 562]}
Length = 80
Score = 81.7 bits (202), Expect = 5e-20
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
+ +P L ++ T+ +W KK GD + ++L EIETDK + +G L +L G
Sbjct: 5 ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64
Query: 145 SKDVPIGKLVCIIVE 159
+ V +++ + E
Sbjct: 65 TT-VTSRQILGRLRE 78
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 81.7 bits (202), Expect = 7e-20
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
L + + T+ W KEGD +++ D + E+++DKA++ + +G + K+
Sbjct: 7 FKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLD 66
Query: 145 SKDVPIGKLVCII-VENESDV 164
+GK + I E D+
Sbjct: 67 DI-AYVGKPLVDIETEALKDL 86
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Azotobacter vinelandii [TaxId:
354]}
Length = 79
Score = 75.6 bits (186), Expect = 8e-18
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
+ P ++ GT+ +W KK G+ + +L+ +IETDK M +G +A+I+ G
Sbjct: 4 IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63
Query: 145 SKDVPIGKLVCIIVEN 160
V G+L+ + E
Sbjct: 64 DT-VLSGELLGKLTEG 78
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 74.8 bits (184), Expect = 1e-17
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
LP + + G IV W K GD++NE D+L E++ DKA + +P +G + +ILVP G
Sbjct: 4 FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 63
Query: 145 SKDVPIGKLVCII 157
+ +G+ + +
Sbjct: 64 TV-ATVGQTLITL 75
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
{Escherichia coli [TaxId: 562]}
Length = 214
Score = 71.8 bits (176), Expect = 3e-15
Identities = 14/118 (11%), Positives = 25/118 (21%), Gaps = 21/118 (17%)
Query: 309 MNKALEKR-GAKLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGL 367
+ L+ K I A PE + +D + + SV V ++
Sbjct: 37 ITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTE 96
Query: 368 FTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGK-LQPHEFQ 424
++ + A E P F
Sbjct: 97 TFSSLWSEYHDDFRQF-------------------LHIYSQDVACYGENLAYFPKGFI 135
Score = 42.6 bits (100), Expect = 3e-05
Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALP-ALS 91
+S +F + V ++ + D+V +P A+
Sbjct: 135 IENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGK--YYTQGDKVLMPLAIQ 186
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 69.5 bits (170), Expect = 2e-14
Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 1/85 (1%)
Query: 309 MNKALEKRGA-KLSINDFIIKATALASRRVPEANSSWQDTFIREYHSVDVSVAVNTDKGL 367
+ + +I A A + E + +D + + SVD V +
Sbjct: 36 ITTLKKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQETE 95
Query: 368 FTPIVFDADKKGLVDISNDSRSLIS 392
+ + + S++
Sbjct: 96 TFSALSCPYSSDIDQFMVNYLSVME 120
Score = 35.6 bits (82), Expect = 0.005
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 40 GGTVSISNLGMFGIKNFSAIINPPQACILAVGS-LSQRLVREGNDRVALP-ALS 91
+ N+ NF + ++ ++ DR+ LP ++
Sbjct: 134 TPENHL-NISALPWVNFDSFNLNVANFTDYFAPIITMAKYQQEGDRLLLPLSVQ 186
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Length = 81
Score = 65.2 bits (159), Expect = 4e-14
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
+ +P + E I++ GD + D L +ETDKATM G + ++ V G
Sbjct: 5 LKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVG 63
Query: 145 SKDVPIGKLVCII-VENES 162
K + G L+ ++ E +
Sbjct: 64 DK-ISEGGLIVVVEAEGTA 81
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 242
Score = 67.9 bits (165), Expect = 1e-13
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 36/175 (20%)
Query: 267 APSKSAKPTANGPFTDLPVSGVRGVIAKRLLQSKQVI---------------KLREQMNK 311
A +K A P T +SG+R IAK ++ SK R++
Sbjct: 1 AAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKA 60
Query: 312 ALEKRGAKLSINDFIIKATALASRRVPEANSSWQDTF--IREYHSVDVSVAVNTDKGLFT 369
++G KL+ +++KA A R P N+S D I + H ++ +A +TD+GL
Sbjct: 61 IAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLV 120
Query: 370 PIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAKEGKLQPHEFQ 424
P++ AD+K + + + ++ LA KA++GKL P E +
Sbjct: 121 PVIKHADRKPIFAL-------------------AQEINELAEKARDGKLTPGEMK 156
Score = 35.6 bits (81), Expect = 0.007
Identities = 17/56 (30%), Positives = 35/56 (62%)
Query: 39 KGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGNDRVALPALSPTM 94
KG + +I+N+G G + F+ +IN P+ IL +G ++++ + + VA P L+ ++
Sbjct: 156 KGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSL 211
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Escherichia coli [TaxId: 562]}
Length = 80
Score = 63.3 bits (154), Expect = 2e-13
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 85 VALPALSPTMEMGTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAG 144
V +P + + + K GDK+ L +E DKA+M P G + ++ V G
Sbjct: 5 VNVPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVG 62
Query: 145 SKDVPIGKLVCII-VENES 162
K V G L+ I VE +
Sbjct: 63 DK-VKTGSLIMIFEVEGAA 80
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Length = 79
Score = 60.3 bits (146), Expect = 2e-12
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
G ++ K GD + L +E+ KA+M +P+ G + + V G K + G +
Sbjct: 13 GEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIE 71
Query: 157 IVENES 162
+
Sbjct: 72 LEPAAG 77
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of
transcarboxylase (TC 1.3S) {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 77
Score = 54.5 bits (131), Expect = 2e-10
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCI 156
GT+ KEGD + G + +E K P +G + K+LV V G+ +
Sbjct: 17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIK 75
Query: 157 I 157
I
Sbjct: 76 I 76
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase
{Azotobacter vinelandii [TaxId: 354]}
Length = 243
Score = 54.5 bits (130), Expect = 4e-09
Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 17/151 (11%)
Query: 278 GPFTDLPVSGVRGVIAKRLLQSKQVI---------------KLREQMNKALEKRGAKLSI 322
G ++P++ + + A L +S + R EK G KL++
Sbjct: 13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTV 72
Query: 323 NDFIIKATALASRRVPEANSSWQDTFIR--EYHSVDVSVAVNTDKGLFTPIVFDADKKGL 380
++KA A + +P+ NSS + V + AV+T GL P++ + D+K L
Sbjct: 73 LPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSL 132
Query: 381 VDISNDSRSLISFRRPVKFSEESNDVKTLAA 411
+ ++ ++ L R K ++
Sbjct: 133 LQLAAEAAELAEKARSKKLGADAMQGACFTI 163
Score = 30.2 bits (67), Expect = 0.39
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 33 LAGLRKKGGTVSISNLGMFGIKNFSAIINPPQACILAVGSLSQRLVREGN 82
L +G +IS+LG G F+ I+N P+ IL V S + V +G
Sbjct: 151 LGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGK 200
>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 42
Score = 48.3 bits (116), Expect = 1e-08
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 220 RVYASPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKASK 261
RV A P ++ A EKG+D+ + G+G G + D+
Sbjct: 1 RVIAMPSVRKYAREKGVDIRLV-QGTGKNGRVLKEDIDAFLA 41
>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide
succinyltransferase {Escherichia coli [TaxId: 562]}
Length = 39
Score = 42.2 bits (100), Expect = 2e-06
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 224 SPLAKRLAAEKGLDLSSIGAGSGLFGSITSADLSKA 259
SP +RL AE LD S+I G+G+ G +T D+ K
Sbjct: 2 SPAIRRLLAEHNLDASAI-KGTGVGGRLTREDVEKH 36
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 35.9 bits (83), Expect = 0.002
Identities = 14/34 (41%), Positives = 14/34 (41%)
Query: 179 GASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS 212
G SA A P A A A AP PT PS
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 34.4 bits (79), Expect = 0.007
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 165 AAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKA 201
A F D +P A A A AP P +
Sbjct: 10 AIFGDSAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 33.2 bits (76), Expect = 0.018
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 177 AAGASAPAPPPPKVAAAPPPPPPKAAPAPSPT 208
+A AS P A P P +P+
Sbjct: 15 SAAASPGGAQAPATTGAAGTAPTAPQPTAAPS 46
Score = 32.4 bits (74), Expect = 0.028
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 178 AGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPV 210
+ A++P P A + +
Sbjct: 15 SAAASPGGAQAPATTGAAGTAPTAPQPTAAPSI 47
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia
virus type 2 [TaxId: 11909]}
Length = 137
Score = 32.9 bits (75), Expect = 0.026
Identities = 15/38 (39%), Positives = 16/38 (42%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPS 212
P A A P P P PPPPP A P P P+
Sbjct: 95 PSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEPT 132
Score = 29.8 bits (67), Expect = 0.28
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 178 AGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVP 211
SAPA P P PPP P+P P
Sbjct: 93 VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPP 126
Score = 29.1 bits (65), Expect = 0.47
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 174 APPAAGASAPAPPPPKVAAAPPPPPPKAAPA 204
P + PPPP + PPP P
Sbjct: 102 VPTPICPTTTPPPPPPPSPEAHVPPPYVEPT 132
Score = 28.7 bits (64), Expect = 0.61
Identities = 10/32 (31%), Positives = 10/32 (31%)
Query: 184 APPPPKVAAAPPPPPPKAAPAPSPTPVPSQKT 215
P A P P P P P P P P
Sbjct: 93 VSPSAPAAPVPTPICPTTTPPPPPPPSPEAHV 124
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 32.0 bits (71), Expect = 0.12
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIETDKA 124
G I+ KEG + G L +I+
Sbjct: 24 GIILKRLFKEGSDVKAGQQLYQIDPATY 51
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 29.5 bits (66), Expect = 0.15
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 100 VSWAKKEGDKLNEGDLLAEIETDKATMGFETPEEGYLAKILVPAGSKDVPIGKLVCII 157
+ G K+N GD L +E K E + G + ILV +G V + + +I
Sbjct: 23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVI 79
Score = 29.5 bits (66), Expect = 0.16
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 97 GTIVSWAKKEGDKLNEGDLLAEIE 120
GT+ + + G + + L IE
Sbjct: 57 GTVKAILVESGQPVEFDEPLVVIE 80
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 28.6 bits (64), Expect = 0.52
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 179 GASAPAPPPPKVAAAPPPPPPKAAPAPSPTP 209
G+S + P + P P A P P
Sbjct: 1 GSSGSSGAPAE----PAAPKSGEAETPPKHP 27
Score = 26.7 bits (59), Expect = 2.7
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 176 PAAGASAPAPPPPKVAAAPPPPPP 199
++GA A P A PP P
Sbjct: 4 GSSGAPAEPAAPKSGEAETPPKHP 27
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 28.8 bits (64), Expect = 0.61
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 175 PPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLAKRLAAE 233
P + P + A P A + P QK G R++ PL + +
Sbjct: 28 PQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLF--PLIQAMHPT 84
Score = 27.2 bits (60), Expect = 2.2
Identities = 14/58 (24%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 176 PAAGASAPAPPPPKV------AAAPPPPPPKAAPAPSPTPVPSQKTSGGTRVYASPLA 227
P A+A P V A P A P+ G + AS LA
Sbjct: 2 PLGSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLA 59
>d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain
{Escherichia coli [TaxId: 562]}
Length = 91
Score = 27.8 bits (62), Expect = 0.65
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 223 ASPLAKRLAAEKGLDLSS-IGAGSGLFGSITSADLSKA 259
A+ A+++ A + + ++S G LFGSI + D++ A
Sbjct: 7 ANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADA 44
>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
{Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 388
Score = 29.3 bits (64), Expect = 0.88
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 185 PPPPKVAAAPPPPPPKAAPAPSPTPVP 211
PPP P P K P P+
Sbjct: 3 TPPPASLRNPLIIPEKIMMGPGPSNCS 29
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 86
Score = 27.3 bits (60), Expect = 1.0
Identities = 13/75 (17%), Positives = 30/75 (40%)
Query: 344 WQDTFIREYHSVDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEES 403
+Q F V V+V + G + ++ + +G++ +S SR I + +
Sbjct: 6 YQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRN 65
Query: 404 NDVKTLAAKAKEGKL 418
V + ++G +
Sbjct: 66 ECVVVIRVDKEKGYI 80
>d1tzpa_ d.65.1.3 (A:) D-alanyl-D-alanine-endopeptidase MepA
{Escherichia coli [TaxId: 562]}
Length = 255
Score = 28.7 bits (64), Expect = 1.1
Identities = 10/48 (20%), Positives = 13/48 (27%), Gaps = 9/48 (18%)
Query: 175 PPAAGASAPAPPPPKVAA---------APPPPPPKAAPAPSPTPVPSQ 213
P + P PP PP P +P P+P
Sbjct: 198 PADSLECEDQPLPPSGDGCGAELQSWFEPPKPGTTKPEKKTPPPLPPS 245
>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId:
9606]}
Length = 184
Score = 27.7 bits (61), Expect = 2.0
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 192 AAPPPPPPKAAPAPSPTP 209
A P A+ P+PTP
Sbjct: 135 AEPTKAGRGASQPPTPTP 152
>d2j0pa1 e.62.1.1 (A:4-341) Hemin transport protein HemS {Yersinia
enterocolitica [TaxId: 630]}
Length = 338
Score = 27.8 bits (62), Expect = 2.3
Identities = 5/48 (10%), Positives = 14/48 (29%), Gaps = 6/48 (12%)
Query: 156 IIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAP 203
+ V ++D+ A++ P ++ P +
Sbjct: 136 VYVTEQTDMPAWEALLAQ------FITTENPELQLEPLSAPEVTEPTA 177
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 26.6 bits (58), Expect = 2.3
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 180 ASAPAPPPPKVAAAPPPPPPKAAPAPS 206
+ PK A PP A PS
Sbjct: 65 SENEKAVSPKKALLPPTVSLSATSGPS 91
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Sulfolobus solfataricus
[TaxId: 2287]}
Length = 84
Score = 25.7 bits (56), Expect = 3.6
Identities = 10/64 (15%), Positives = 21/64 (32%)
Query: 355 VDVSVAVNTDKGLFTPIVFDADKKGLVDISNDSRSLISFRRPVKFSEESNDVKTLAAKAK 414
+ +V D G + + + + S S + R V VK + +
Sbjct: 15 LIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRR 74
Query: 415 EGKL 418
+G +
Sbjct: 75 KGTV 78
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris
suum) [TaxId: 6253]}
Length = 147
Score = 26.5 bits (58), Expect = 3.8
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 161 ESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPP 198
+AAF++ +++ PP++G P P +PPPPP
Sbjct: 107 REKIAAFEEQQENQPPSSG--MPHGAVPAGGLSPPPPP 142
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 26.5 bits (58), Expect = 3.9
Identities = 20/140 (14%), Positives = 36/140 (25%), Gaps = 20/140 (14%)
Query: 95 EMGTIVSWAKKEGD-KLNEGDLLAEI---ETDKATMGFET----PEEGYLAKILVPAGSK 146
+ ++ W +G KL + + +A + +K M ++ Y+ I+ +
Sbjct: 18 QNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYYYVKNIIKKVNGQ 77
Query: 147 DVPIGKLVCIIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPS 206
K V V + D +
Sbjct: 78 -----KFVYKFVSYPEILN--MDPMTVGRIEGDCESLNFSE-----VSSSSKDVENGGKD 125
Query: 207 PTPVPSQKTSGGTRVYASPL 226
P P KTS S L
Sbjct: 126 KPPQPGAKTSSRNDYIHSGL 145
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
O157:H7 [TaxId: 83334]}
Length = 337
Score = 26.7 bits (59), Expect = 5.1
Identities = 5/48 (10%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 156 IIVENESDVAAFKDFKDDAPPAAGASAPAPPPPKVAAAPPPPPPKAAP 203
+ + +D+AA+ + + P A
Sbjct: 137 VYATDNTDMAAWSELLARF--ITDENTPLELKAVDAPVVQTRADATVV 182
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus
[TaxId: 274]}
Length = 170
Score = 26.1 bits (56), Expect = 6.3
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 10/37 (27%)
Query: 187 PPKV---------AAAPPPPPPKAAPA-PSPTPVPSQ 213
+V AAPP PPP+A P P +P +
Sbjct: 131 AYRVYTPFSRLYRGAAPPLPPPEALPKGPEEGEIPRE 167
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc
6803 [TaxId: 1143]}
Length = 204
Score = 26.1 bits (56), Expect = 6.6
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 173 DAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPS 206
P A + P P + PPP+ P +
Sbjct: 170 SIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQIN 203
>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase)
{Lactobacillus plantarum [TaxId: 1590]}
Length = 266
Score = 26.1 bits (57), Expect = 7.5
Identities = 5/43 (11%), Positives = 9/43 (20%)
Query: 172 DDAPPAAGASAPAPPPPKVAAAPPPPPPKAAPAPSPTPVPSQK 214
D + G A P P + + +
Sbjct: 223 DGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQ 265
>d1jjcb4 d.58.13.1 (B:682-785) Phenylalanyl-tRNA synthetase {Thermus
thermophilus [TaxId: 274]}
Length = 104
Score = 24.8 bits (54), Expect = 9.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 294 KRLLQSKQVIKLREQMNKALEKRGAKL 320
KR L+ ++V + ++ +AL RG L
Sbjct: 72 KRTLRDEEVEEAVSRVAEALRARGFGL 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.376
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,514,629
Number of extensions: 71950
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 354
Number of HSP's successfully gapped: 67
Length of query: 426
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 338
Effective length of database: 1,199,356
Effective search space: 405382328
Effective search space used: 405382328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.9 bits)