BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16143
         (388 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FCZ|B Chain B, Crystal Structure Of Toluene-tolerance Protein From
           Pseudomonas Putida (strain Kt2440), Northeast Structural
           Genomics Consortium (nesg) Target Ppr99
 pdb|4FCZ|A Chain A, Crystal Structure Of Toluene-tolerance Protein From
           Pseudomonas Putida (strain Kt2440), Northeast Structural
           Genomics Consortium (nesg) Target Ppr99
          Length = 223

 Score = 28.1 bits (61), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 9/138 (6%)

Query: 23  YPVDPN---DQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVFQREYRKIINRFEYT 79
           Y  +PN   D L+ +   +++A+  +  +  + +    + +  Q FQ  +++ + +F   
Sbjct: 48  YKSNPNAFYDSLNRILGPVVDADGISRSIXTVKYSRKATPEQXQRFQENFKRSLXQFYGN 107

Query: 80  IAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTD 139
              E+N      D     D   +S    V  N G++   Y V   Y L  +  G W+V +
Sbjct: 108 ALLEYNNQGITVDPAKADDGKRASVGXKVTGNNGAV---YPV--QYTLENIG-GEWKVRN 161

Query: 140 FDSYTYNISSIVNDSEPD 157
                 NI  +  D   D
Sbjct: 162 VIVNGINIGKLFRDQFAD 179


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,528,125
Number of Sequences: 62578
Number of extensions: 527289
Number of successful extensions: 1291
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1288
Number of HSP's gapped (non-prelim): 10
length of query: 388
length of database: 14,973,337
effective HSP length: 101
effective length of query: 287
effective length of database: 8,652,959
effective search space: 2483399233
effective search space used: 2483399233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)