RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16143
(388 letters)
>gnl|CDD|163618 cd00842, MPP_ASMase, acid sphingomyelinase and related proteins,
metallophosphatase domain. Acid sphingomyelinase
(ASMase) is a ubiquitously expressed phosphodiesterase
which hydrolyzes sphingomyelin in acid pH conditions to
form ceramide, a bioactive second messenger, as part of
the sphingomyelin signaling pathway. ASMase is
localized at the noncytosolic leaflet of biomembranes
(for example the luminal leaflet of endosomes, lysosomes
and phagosomes, and the extracellular leaflet of plasma
membranes). ASMase-deficient humans develop
Niemann-Pick disease. This disease is characterized by
lysosomal storage of sphingomyelin in all tissues.
Although ASMase-deficient mice are resistant to
stress-induced apoptosis, they have greater
susceptibility to bacterial infection. The latter
correlates with defective phagolysosomal fusion and
antibacterial killing activity in ASMase-deficient
macrophages. ASMase belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 296
Score = 137 bits (346), Expect = 1e-37
Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 24 PVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPG--SEDTMQVFQREYRKIINRFEYTIA 81
DP QL WL L EAE++ EKV I+ HIPPG S DT++ + Y +IINR+ TIA
Sbjct: 192 ETDPAGQLQWLEDELQEAEQAGEKVWIIGHIPPGVNSYDTLENWSERYLQIINRYSDTIA 251
Query: 82 AEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYR 126
+F GHTH ++ +FYD N++ NVA S+T Y NP +R
Sbjct: 252 GQFFGHTHRDEFRVFYDDNDTGEPINVALIAPSVTPYSGNNPGFR 296
Score = 65.0 bits (159), Expect = 8e-12
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 287 IIQLTDIHYDPKYLAGKTAH--CIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIR 344
+ ++DIHYDP Y G C +PLCCR + + A +G Y CD P ++
Sbjct: 1 FLHISDIHYDPLYKVGSEYSANCHSPLCCR---DESGDISPPAGPWGDY-GCDSPWRLVE 56
Query: 345 SALEQIKKH 353
SALE IKK+
Sbjct: 57 SALEAIKKN 65
>gnl|CDD|163639 cd07396, MPP_Nbla03831, Homo sapiens Nbla03831 and related
proteins, metallophosphatase domain. Nbla03831 (also
known as LOC56985) is an uncharacterized Homo sapiens
protein with a domain that belongs to the
metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 267
Score = 45.4 bits (108), Expect = 2e-05
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 30 QLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVF----QREYRKIINRFEYTIAAEFN 85
QL WL + L EA+ + EKV I SH P E T E I+ + + A +
Sbjct: 164 QLQWLRNELQEADANGEKVIIFSHFPLHPESTSPHGLLWNHEEVLSILRAYG-CVKACIS 222
Query: 86 GHTHY 90
GH H
Sbjct: 223 GHDHE 227
>gnl|CDD|163638 cd07395, MPP_CSTP1, Homo sapiens CSTP1 and related proteins,
metallophosphatase domain. CSTP1 (complete
S-transactivated protein 1) is an uncharacterized Homo
sapiens protein with a metallophosphatase domain, that
is transactivated by the complete S protein of hepatitis
B virus. CSTP1 belongs to the metallophosphatase (MPP)
superfamily. MPPs are functionally diverse, but all
share a conserved domain with an active site consisting
of two metal ions (usually manganese, iron, or zinc)
coordinated with octahedral geometry by a cage of
histidine, aspartate, and asparagine residues. The MPP
superfamily includes: Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 262
Score = 36.1 bits (84), Expect = 0.018
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 10 FWENH---LVVKWNVLYPVDP-------NDQLSWLASTLLEAEKSNEKVHIL--SHIP-- 55
FW +V+ N DP Q WL L A++S+ K H++ HIP
Sbjct: 121 FWVGGVFFIVL--NSQLFFDPSEVPELAQAQDVWLEEQLEIAKESDCK-HVIVFQHIPWF 177
Query: 56 ---PGSEDTMQVFQREYRKI-INRF-EYTIAAEFNGHTHYE 91
P ED+ + RK +++F + + A F+GH H
Sbjct: 178 LEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRN 218
>gnl|CDD|224327 COG1409, Icc, Predicted phosphohydrolases [General function
prediction only].
Length = 301
Score = 34.2 bits (78), Expect = 0.11
Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 24/153 (15%)
Query: 16 VVKWNVLYPVDPN-----DQLSWLASTLLEAEKSNEKVHILSHIPP------GSEDTMQV 64
V+ + P P +QL WL L A + + ++ H P G +
Sbjct: 107 VIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVDRVALR 166
Query: 65 FQREYRKIINRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITS------- 117
E ++ + +GH H T Y N + + + G + S
Sbjct: 167 DAGELLDVLIAHGNDVRLVLSGHIHLAAQT-VYQLNGTRLSDLLVGAGPATCSQVFRGSA 225
Query: 118 -YYNV----NPNYRLYKVARGTWEVTDFDSYTY 145
+N P R+ +A E +
Sbjct: 226 TAFNTLDLDGPGVRVLVLAAEGGESLEIPRLPD 258
>gnl|CDD|128920 smart00675, DM11, Domains in hypothetical proteins in Drosophila
including 2 in CG15241 and CG9329.
Length = 164
Score = 33.2 bits (76), Expect = 0.12
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 110 YNGGSITSYYNVNPNYRL------YKVARGTWEVTDFDSYTYNISSIVNDSEPDWIKLYS 163
+ G+IT ++V P R+ RGTW+ T F+ T + + D W K Y
Sbjct: 45 HISGNITVIWDVQPTDRISARVSVMHFERGTWQPTVFNMATPDFCKSMFDKNQYWYK-YW 103
Query: 164 FK 165
K
Sbjct: 104 TK 105
>gnl|CDD|224419 COG1502, Cls,
Phosphatidylserine/phosphatidylglycerophosphate/cardioli
pin synthases and related enzymes [Lipid metabolism].
Length = 438
Score = 32.5 bits (74), Expect = 0.41
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 13/126 (10%)
Query: 19 WNVLYPVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVFQREYRKIINRFEY 78
+ Y ++ + L+EA K +V +L + + + ++ R
Sbjct: 87 YLQYYIWQDDELGREILDALIEAAKRGVEVRLLLDDIG----STRGLLKSLLALLKRAGI 142
Query: 79 TIAAEFNGHTHYEDITIFYDKNNSSRAT----NVAYNGGSITSYYNVNPNYRLYKVARGT 134
FN + ++ + VA+ GG+ N+ Y G
Sbjct: 143 EEVRLFNPASPRPLRFRRLNRRLHRKIVVIDGKVAFVGGA-----NIGDEYFHKDKGLGY 197
Query: 135 WEVTDF 140
W
Sbjct: 198 WRDLHV 203
>gnl|CDD|223721 COG0648, Nfo, Endonuclease IV [DNA replication, recombination, and
repair].
Length = 280
Score = 29.2 bits (66), Expect = 3.1
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 68 EYRKIINRFEYTIAAEFNGHTHYEDI 93
++ K++N F+ + E+ H H D
Sbjct: 191 DFEKVLNEFDKVLGLEYLKHIHLNDS 216
>gnl|CDD|236813 PRK10993, PRK10993, outer membrane protease; Reviewed.
Length = 314
Score = 29.2 bits (66), Expect = 3.9
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 16/74 (21%)
Query: 89 HYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLY------KV--ARGTWEVTDF 140
HY F DK +S + + N G Y V PN +LY + +G ++ D
Sbjct: 231 HYLRNLTFRDKFKNSPYYSASINAG-----YYVTPNAKLYVEGAYNRYFEGKGDTQIYDH 285
Query: 141 DSYTYNISSIVNDS 154
+ SS D+
Sbjct: 286 AT---GTSSYFKDA 296
>gnl|CDD|237900 PRK15071, PRK15071, lipopolysaccharide ABC transporter permease;
Provisional.
Length = 356
Score = 29.1 bits (66), Expect = 4.2
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 112 GGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNISSIVNDSEPDWIKLYSFKEEYGLE 171
GGS+ S +G W D + + Y I + +D+E + I +Y F E L+
Sbjct: 140 GGSLLS------------TQQGVW-AKDGNDFVY-IGRVEDDNELNGISIYHFDENRKLQ 185
Query: 172 STR 174
S R
Sbjct: 186 SVR 188
>gnl|CDD|213859 TIGR03767, P_acnes_RR, metallophosphoesterase, PPA1498 family.
This model describes a small collection of probable
metallophosphoresterases, related to pfam00149 but with
long inserts separating some of the shared motifs such
that the homology is apparent only through multiple
sequence alignment. Members of this protein family, in
general, have a Sec-independent TAT (twin-arginine
translocation) signal sequence, N-terminal to the region
modeled by This model. Members include YP_056203.1 from
Propionibacterium acnes KPA171202.
Length = 496
Score = 29.1 bits (65), Expect = 5.0
Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 13/85 (15%)
Query: 30 QLSWLASTLLEAEKSNEKVHILSHIPPGS---EDTMQVFQREYR-------KIINRFEYT 79
Q W+ TL S+ + SH S E T V E R ++
Sbjct: 324 QFKWIKDTL--RASSDTLFVLFSHHTSWSMVNELTDPVDPGEKRHLGTELVSLLLEHP-N 380
Query: 80 IAAEFNGHTHYEDITIFYDKNNSSR 104
+ A NGHTH IT +
Sbjct: 381 VLAWVNGHTHSNKITAHRRVEGVGK 405
>gnl|CDD|182663 PRK10707, PRK10707, putative NUDIX hydrolase; Provisional.
Length = 190
Score = 28.4 bits (64), Expect = 5.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 25 VDPNDQLSWLASTLLEAEKS----NEKVHILSHIPP 56
VDP D S +A+ L EA++ V ++ +PP
Sbjct: 69 VDPTDA-SLIATALREAQEEVAIPPSAVEVIGVLPP 103
>gnl|CDD|218988 pfam06321, P_gingi_FimA, Major fimbrial subunit protein (FimA).
This family consists of several Porphyromonas gingivalis
major fimbrial subunit protein (FimA) sequences.
Fimbriae of Porphyromonas gingivalis, a
periodontopathogen, play an important role in its
adhesion to and invasion of host cells. The fimA genes
encoding fimbrillin (FimA), a subunit protein of
fimbriae, have been classified into five types, types I
to V, based on nucleotide sequences. It has been found
that type II FimA can bind to epithelial cells most
efficiently through specific host receptors. Human
dental plaque is a multispecies microbial biofilm that
is associated with two common oral diseases, dental
caries and periodontal disease. There is an
inter-species contact-dependent communication system
between P. gingivalis and S. cristatus that involces the
Arc-A enzyme.
Length = 265
Score = 28.3 bits (63), Expect = 7.6
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 91 EDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFD 141
+++ + K SS G S+ + +P Y LY T D
Sbjct: 197 KEVYLLNAKKKSSLFLEEETWGTSLANGAAGDPLY-LYG---NPKSFTSAD 243
>gnl|CDD|118503 pfam09974, DUF2209, Uncharacterized protein conserved in archaea
(DUF2209). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 128
Score = 27.1 bits (60), Expect = 8.6
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 35 ASTLLEAEKSN----EKVHIL---SHIPPGSEDTMQVFQREYRKIINRFEYTIAAE 83
A+ LE + +V++ + PP D ++ +R + FEYTI AE
Sbjct: 20 AAVALEVSADHIETVRQVNVFPVCTREPPNLRDIVEEVERTLDGLDKDFEYTIVAE 75
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.408
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,596,296
Number of extensions: 1833573
Number of successful extensions: 1564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1560
Number of HSP's successfully gapped: 28
Length of query: 388
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 289
Effective length of database: 6,546,556
Effective search space: 1891954684
Effective search space used: 1891954684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.0 bits)