RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16143
(388 letters)
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria
monocytogenes}
Length = 443
Score = 53.3 bits (127), Expect = 5e-08
Identities = 17/178 (9%), Positives = 56/178 (31%), Gaps = 20/178 (11%)
Query: 28 NDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQV------FQREYRKIINRFEYTIA 81
L W+ + A+K+ K+ + H + + + ++ + +
Sbjct: 218 AGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTE--GAMD 275
Query: 82 AEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARG----TWEV 137
+GH H ++I + T++ +++ + Y + T++
Sbjct: 276 FSLSGHIHTQNIRSAKSTDGKE-ITDIV--TNALSVFP---HKYGNITYSAKNKNFTYQS 329
Query: 138 TDFDSYTYNISSIVNDSEPDWIKLYSFK--EEYGLESTRPEEISNNHLKGSNKEHYDE 193
D + + D + ++ G + + +++ N+ ++
Sbjct: 330 QKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEK 387
Score = 27.5 bits (60), Expect = 9.4
Identities = 9/84 (10%), Positives = 22/84 (26%), Gaps = 17/84 (20%)
Query: 272 APSESRYLASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYG 331
+ + +S++ TD+HY L ++ G
Sbjct: 27 TEKITAPIEKDRNLSMVVTTDVHYFAPSLTDN-----------------GKAFEKYVAAG 69
Query: 332 HYDNCDMPLDVIRSALEQIKKHKI 355
++ + L ++ K
Sbjct: 70 DGKQLAYSDEITDAFLADVESKKT 93
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase,
metalloprotein, metallophosphoesterase, protein
structure initiative; 1.70A {Danio rerio} SCOP:
d.159.1.12
Length = 322
Score = 51.9 bits (123), Expect = 1e-07
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 5/99 (5%)
Query: 4 QDLKLLFWENHLVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQ 63
QDL L L ++ QL WL + L ++ E+V I SH+P
Sbjct: 179 QDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADP 238
Query: 64 VFQ----REYRKIINRFEYTIAAEFNGHTHYEDITIFYD 98
+ ++ ++ GH H
Sbjct: 239 ICLAWNHEAVLSVLRSH-QSVLCFIAGHDHDGGRCTDSS 276
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 51/290 (17%), Positives = 87/290 (30%), Gaps = 107/290 (36%)
Query: 125 YRLYKVARGTWEVTD---FDSYTYNISSIVNDSEPDWIKLYSFKEEYGLESTRPEEISNN 181
Y+ K A+ W D D+Y ++I IV ++ P + ++ F E G + I N
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINN-PVNLTIH-FGGEKG------KRIREN 1687
Query: 182 HLKGSNKEHYDEKRKTKILCD---------------------------IMTSEVADSTHC 214
+ + D K KT+ + + E A
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA----- 1742
Query: 215 NLLKKDVLF-DLKDQGIPLTPERVCGTVL-ENS-NCS--------------------VKN 251
F DLK +G+ G L E + S ++
Sbjct: 1743 -------AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV 1795
Query: 252 GPQVDWQVDTNYGTKVDRITAPSESRYLASGDEISIIQLTDIHYDPKYLAGKTAHCIAPL 311
D +NYG + A + R AS + ++ + + + +T L
Sbjct: 1796 AVPRDELGRSNYG-----MIAINPGRVAASFSQEALQYVVER------VGKRTGW----L 1840
Query: 312 CCRVDQP---NASSETDRATKY---GHYDNCDMPLDVIRSALEQIKKHKI 355
+ N ++ Y G LD + + L IK KI
Sbjct: 1841 V----EIVNYNVENQQ-----YVAAGDLRA----LDTVTNVLNFIKLQKI 1877
Score = 45.8 bits (108), Expect = 2e-05
Identities = 73/504 (14%), Positives = 137/504 (27%), Gaps = 214/504 (42%)
Query: 21 VLYPVDPNDQLSW---LASTLLEAE----KSNEKVH-ILSHIPPGSEDTMQVFQ---REY 69
V V+P+ + L L E E + N+ +H + + + ++ T+ + + Y
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-IHALAAKLLQENDTTLVKTKELIKNY 126
Query: 70 ---RKIINR----------FEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNG-GSI 115
R + R F A G+ + IF G G+
Sbjct: 127 ITARIMAKRPFDKKSNSALFR---AVG-EGNAQL--VAIF--------------GGQGNT 166
Query: 116 TSY-------YNVNPNYR-------------LYKVARGTWEVTDFDSYTYNISSIVNDSE 155
Y Y Y L ++ R T + + NI + +
Sbjct: 167 DDYFEELRDLYQT---YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 156 --PDW------------IKLYSFK------EEYGLESTRPEEISNNHLKGSNKEHYDEKR 195
PD I + + G P E+ ++LKG+
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF---TPGEL-RSYLKGA--------- 270
Query: 196 KTKILCDIMTSEV------ADSTHCNLLKK-DVLF------------------DLKD--- 227
T ++T+ +S ++ K VLF L+D
Sbjct: 271 -TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 228 --QGIP--------LTPERVCGTVLENSNC----------SVKNGPQ------------- 254
+G+P LT E+V + +N S+ NG +
Sbjct: 330 NNEGVPSPMLSISNLTQEQV-QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYG 388
Query: 255 ---------VDWQVDTN----------YGTKVDRITAPSESRYLASGDEISIIQLT--DI 293
+D + + + + +P S L ++ L ++
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 294 HYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKH 353
++ K + P+ T G D + + ++ I +
Sbjct: 449 SFNAKDIQ-------IPV--------------YDTFDGS-DLRVLSGSISERIVDCIIRL 486
Query: 354 KIFWLSEKGHAKGNGARGHFF-FG 376
+ W E A H FG
Sbjct: 487 PVKW--ET--TTQFKAT-HILDFG 505
Score = 45.4 bits (107), Expect = 3e-05
Identities = 49/306 (16%), Positives = 89/306 (29%), Gaps = 106/306 (34%)
Query: 6 LKLLFW---ENHLVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEKV--HILSHIPPGSED 60
+ +LF+ + YP S S L ++ ++NE V +LS I +++
Sbjct: 300 ITVLFFIGVRCYEA------YP-----NTSLPPSILEDSLENNEGVPSPMLS-ISNLTQE 347
Query: 61 TMQVFQREYRKIINRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYN 120
+Q +N+ + A I++ N ++ V+ G S Y
Sbjct: 348 QVQ-------DYVNKTNSHLPA--GKQVE---ISLV----NGAKNLVVS---GPPQSLYG 388
Query: 121 VNPNYRLYKVARGTWEVTD-----FDSYTYNISS----IVNDSEPDWIKLYSFKEEYGLE 171
+N R K G D F S+ + + P F L
Sbjct: 389 LNLTLRKAKAPSG----LDQSRIPFSERKLKFSNRFLPV---ASP-------FHSHL-LV 433
Query: 172 STRP----------EEISNNHLK--------GSNKEHYDEKRKTKILCDIMTSEVAD--- 210
+ ++ GS+ ++ + D +
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG-SISERIVDCIIRLPVKWET 492
Query: 211 -----STHCNLLKKDVLFD-LKDQGI-PLTPERVCGT---VLENSNCSVKNGPQVDWQVD 260
+TH + F G+ LT GT V+ ++ P D
Sbjct: 493 TTQFKATHI------LDFGPGGASGLGVLTHRNKDGTGVRVIVAG--TLDINP------D 538
Query: 261 TNYGTK 266
+YG K
Sbjct: 539 DDYGFK 544
Score = 36.2 bits (83), Expect = 0.019
Identities = 40/225 (17%), Positives = 64/225 (28%), Gaps = 81/225 (36%)
Query: 172 STRPEEISNNHLKGSNKEHYDEKRKTKILCDIMTSEVADSTHCNLLKKDVLFDLKDQGIP 231
STRP +S+ L EH V ++ + L++Q
Sbjct: 5 STRPLTLSHGSL-----EH--------------VLLVPTASFFIASQ------LQEQFNK 39
Query: 232 LTPERVCGTVLENSNCSVKNGPQVDWQVDTNYGTKVDRITAPSE--SRYLA--------- 280
+ PE P + D D T P+E ++L
Sbjct: 40 ILPE-----------------PTEGFAAD-------DEPTTPAELVGKFLGYVSSLVEPS 75
Query: 281 -SGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDM- 338
G ++ L ++ YL G H +A + + + Y M
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY--ITARIMA 133
Query: 339 --PLD-VIRSALEQIKKHKIFWLSEKGHAK------GNGARGHFF 374
P D SAL F +G+A+ G G +F
Sbjct: 134 KRPFDKKSNSAL--------FRAVGEGNAQLVAIFGGQGNTDDYF 170
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.020
Identities = 45/303 (14%), Positives = 92/303 (30%), Gaps = 70/303 (23%)
Query: 60 DT-MQVFQREYRKIINRFEYTIAAEFNGHTHYEDIT--IFYDKNNSSRATNVAYNGGSIT 116
D Q +Y+ I++ FE F+ +D+ I S +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSIL-----SKEEIDHIIMSKD-- 59
Query: 117 SYYNVNPNYRLYKVARGTWEVTDFDSYTYNISSIVNDS-EPDWIKLYSF-KEEYGLESTR 174
V+ RL+ W + V + + Y F E +
Sbjct: 60 ---AVSGTLRLF------WTLLSKQEEMV--QKFVEEVLRIN----YKFLMSPIKTEQRQ 104
Query: 175 PEEISNNHLKGSNKEHYDEKRKTKILCDIMTSEVADSTHCNLLKKDVLFDLKDQGIPLTP 234
P ++ +++ ++ + D + K N+ + L+ + L P
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKY---------------NVSRLQPYLKLRQALLELRP 149
Query: 235 ER---VCG------TVLENSNCSVKNGPQVDWQVDTNYGTKVDRITAPSESRYLASGDEI 285
+ + G T + C ++V K+ + + + E
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCL-------SYKVQCKMDFKIFWLNLKNCNS-----PET 197
Query: 286 SIIQLTDIHY--DPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVI 343
+ L + Y DP + + L R+ +E R K Y+NC + L +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKL--RIHS--IQAELRRLLKSKPYENCLLVLLNV 253
Query: 344 RSA 346
++A
Sbjct: 254 QNA 256
Score = 33.3 bits (75), Expect = 0.14
Identities = 34/248 (13%), Positives = 79/248 (31%), Gaps = 80/248 (32%)
Query: 15 LVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEK-------VHILSHIPPGSEDTMQVFQR 67
L + W + D ++ L L EK ++ +++ + +E +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYAL----- 445
Query: 68 EYRKIINRFEYTIAAEFNGHT---HYEDITIF-YDKNNSSRATNVAYNGGSITSYYNVNP 123
+R I++ Y I F+ Y D + + + ++ +I +
Sbjct: 446 -HRSIVDH--YNIPKTFDSDDLIPPYLDQYFYSH----------IGHHLKNIEHPERMTL 492
Query: 124 NYRLYKVARGTWEVTDF---------DSYTYNISSIVNDSEPDWIKLYSFKEEYGLESTR 174
++ DF DS +N S + ++ +K Y + Y
Sbjct: 493 FRMVF---------LDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFY---KPY------ 533
Query: 175 PEEISNNHLKGSNKEHYDEKRKTKILCDIMT------SEVADSTHCNLLKKDVLFDLKDQ 228
I +N Y+ ++ I+ + S + +LL+ ++ + D+
Sbjct: 534 ---ICDND------PKYER-----LVNAILDFLPKIEENLICSKYTDLLRIALMAE--DE 577
Query: 229 GIPLTPER 236
I +
Sbjct: 578 AIFEEAHK 585
Score = 30.2 bits (67), Expect = 1.5
Identities = 38/252 (15%), Positives = 73/252 (28%), Gaps = 76/252 (30%)
Query: 135 WEVTDFDSYTYNISSIVNDSEPDWIKLYSFKEEYGLESTRPEEISNNHLKGSNKEHYDEK 194
W+ + D T I S +N EP +++ + S P
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPA-----EYRKMFDRLSVFPP---------------SAH 386
Query: 195 RKTKILC----DIMTSEVADSTH--CN--LLKK----------DVLFDLKDQGIPLTPER 236
T +L D++ S+V + L++K + +LK
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK---------- 436
Query: 237 VCGTVLENSNCSVKNGPQVDWQVDTNYGTKV----DRITAPSESRYLAS--GDEISIIQL 290
++N + + +Y D + P +Y S G + I+
Sbjct: 437 ----------VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 291 TD-------IHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHY--DNCDMPLD 341
+ + D ++L K H N + Y Y DN
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK---FYKPYICDNDPKYER 543
Query: 342 VIRSALEQIKKH 353
++ + L+ + K
Sbjct: 544 LVNAILDFLPKI 555
Score = 28.7 bits (63), Expect = 4.4
Identities = 28/207 (13%), Positives = 55/207 (26%), Gaps = 58/207 (28%)
Query: 189 EHYDEKRKTKILCDIMTSEVADSTHCNLLKKDVLFDLKDQGIPLTPERVCGTVLENSNCS 248
+++ + + +V D ++L K+ + + ++ L +
Sbjct: 23 SVFEDA----FVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-- 75
Query: 249 VKNGPQ--VDWQVDTNYGTKVDRITAPSESRYLASGDEISIIQLTDIHYDPKYLAGKTAH 306
+ Q V+ + NY + I E R P +
Sbjct: 76 -EEMVQKFVEEVLRINYKFLMSPIKT--EQR------------------QPSMMTRMYIE 114
Query: 307 CIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKIFWLSEKGHAKG 366
L +Q A R Y +R AL +++ K + G G
Sbjct: 115 QRDRLY-NDNQVFAKYNVSRLQPY----------LKLRQALLELRPAK--NVLIDG-VLG 160
Query: 367 NG--------ARGH-----FFFGITRW 380
+G + F I W
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF-W 186
Score = 27.9 bits (61), Expect = 6.8
Identities = 39/259 (15%), Positives = 79/259 (30%), Gaps = 64/259 (24%)
Query: 14 HLVVKWNVLYPVDPNDQLSWLASTL--------LEAEKSNEKVHILSHIPPGSEDTMQVF 65
H+ + + + P++ S L L E +N + LS I D + +
Sbjct: 288 HISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIAESIRDGLATW 344
Query: 66 QREYRKI-INRFEYTIAAEFNG------HTHYEDITIFYDKNNSSRATNVAYNGGSITSY 118
++ + ++ I + N ++ +++F + I
Sbjct: 345 DN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI--K 401
Query: 119 YNVNP------NYRLYKVARGTWEVTDFDSYTYNISSIV------NDSEPD----WIKLY 162
+V Y L V + T +I SI ++E + Y
Sbjct: 402 SDVMVVVNKLHKYSL--VEK------QPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 163 SFKEEYGLESTRPEEISN-------NHLKGSNKEHYDEKRK-TKILCD-------IMTSE 207
+ + + + P + +HLK N EH + + D I
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLK--NIEHPERMTLFRMVFLDFRFLEQKIRHDS 511
Query: 208 VADSTHCNLLKKDVLFDLK 226
A + ++L + L LK
Sbjct: 512 TAWNASGSIL--NTLQQLK 528
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein
structure initiative, MI center for structural
genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Length = 319
Score = 33.0 bits (75), Expect = 0.13
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 20 NVLYPVDPNDQ----LSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVFQREYR 70
N+L +DPN L A + +++ ++ + S D + + R
Sbjct: 9 NLLVVIDPNQDDQPALRR-AVYI--VQRNGGRIKAFLPVYDLSYDMTTLLSPDER 60
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.2 bits (70), Expect = 0.44
Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 30/88 (34%)
Query: 173 TRPEEISNNHLKGSNKEHYDEKRKTKILCDIMTSEVADSTHCNLLKKDVLFDLKDQGIPL 232
TR +G N + C E C + ++ +G
Sbjct: 3 TRESIDKRAGRRGPNLN-------IVLTC----PE------CKVYPPKIVER-FSEG--- 41
Query: 233 TPERVC---GTVLENSNCSVKNGPQVDW 257
+ VC G VL + V +W
Sbjct: 42 --DVVCALCGLVLSDK--LVDTRS--EW 63
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase,
phosphatase, metal ION; 1.90A {Enterobacter aerogenes}
SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Length = 274
Score = 30.9 bits (70), Expect = 0.67
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 29 DQLSWLASTLLEAEKSNEKVHILSHIPP---GSE--DTMQVF-QREYRKIINRFEYTIAA 82
+ +SWL + L E ++ I H PP G+ D + ++ RF ++
Sbjct: 134 ETISWLEAQL--FEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFP-SLTR 190
Query: 83 EFNGHTHYEDITIFYD-KNNSSRATN--VAYNGGSITSYYNVNPN-YRLYKVARGTWEVT 138
F GH H +T + ++ T V Y YY+++P +++ W
Sbjct: 191 IFCGHNHSLTMTQYRQALISTLPGTVHQVPYCHADTDPYYDLSPASCLMHRQVGEQWVSY 250
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV,
RNAse H, reverse transcriptase, transcription; 1.50A
{Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A
3v1r_A* 2hb5_A
Length = 165
Score = 28.7 bits (64), Expect = 2.1
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 341 DVIRSALEQI-KKHKIFWLSEKGHAKGNGA 369
+ I + L+ + ++ + GH KGN A
Sbjct: 109 NEILALLKALFLPKRLSIIHCPGHQKGNSA 138
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol,
structural genomics, for structural genomics of
infectious diseases, csgid; HET: MSE ATP; 2.00A
{Bacillus anthracis} PDB: 3r23_A*
Length = 307
Score = 29.4 bits (67), Expect = 2.1
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 295 YDPKYLAGKTAHCIAPL 311
Y+ KY T + L
Sbjct: 207 YNAKYDDASTIEEVIEL 223
>1lrz_A FEMA, factor essential for expression of methicillin resistance;
peptidoglycan, X-RAY crystallography, multiple anomalous
dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4
d.108.1.4 d.108.1.4
Length = 426
Score = 28.3 bits (62), Expect = 4.9
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 13/110 (11%)
Query: 67 REYRKIINRFEYTIA-AEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNY 125
++ ++ E I + H ++ I + V Y GG+ ++ + +Y
Sbjct: 284 DNLQQQLDANEQKIEEGKRLQEEHGNELPISAGFFFINPFEVVYYAGGTSNAFRHFAGSY 343
Query: 126 RLYKVARGTWEV------TDFDSYTYNISSIVNDSEPDWIKLYSFKEEYG 169
+ WE+ D Y + S + + + FK+ Y
Sbjct: 344 AVQ------WEMINYALNHGIDRYNFYGVSGKFTEDAEDAGVVKFKKGYN 387
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 27.7 bits (62), Expect = 7.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 104 RATNVAYNGGSITSYYNV 121
RA N + GGSIT++Y V
Sbjct: 293 RAGNGIHGGGSITAFYTV 310
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.408
Gapped
Lambda K H
0.267 0.0598 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,060,786
Number of extensions: 357013
Number of successful extensions: 784
Number of sequences better than 10.0: 1
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 34
Length of query: 388
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 293
Effective length of database: 4,049,298
Effective search space: 1186444314
Effective search space used: 1186444314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.4 bits)