RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16143
         (388 letters)



>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog
           zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]}
          Length = 320

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 18/145 (12%), Positives = 36/145 (24%), Gaps = 14/145 (9%)

Query: 5   DLKLLFWENHLVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQV 64
           DL L      L  ++          QL WL + L  ++   E+V I SH+P        +
Sbjct: 178 DLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPI 237

Query: 65  F----QREYRKIINRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAY-NGGSITSYY 119
                      ++     ++     GH H                    +     +    
Sbjct: 238 CLAWNHEAVLSVLRSH-QSVLCFIAGHDHDGGRCTDSS--------GAQHITLEGVIETP 288

Query: 120 NVNPNYRLYKVARGTWEVTDFDSYT 144
             +  +    +      +       
Sbjct: 289 PHSHAFATAYLYEDRMVMKGRGRVE 313


>d1luaa2 c.58.1.4 (A:2-97) Methylene-tetrahydromethanopterin
           dehydrogenase {Methylobacterium extorquens [TaxId: 408]}
          Length = 96

 Score = 28.8 bits (65), Expect = 0.29
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 98  DKNNSSRATNVAYNGG--SITSYYNVNP 123
           D   S     V Y+GG   IT Y NV P
Sbjct: 11  DATPSVFDVVVGYDGGADHITGYGNVTP 38


>d1n67a2 b.2.3.4 (A:370-560) Clumping factor A {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 191

 Score = 28.3 bits (63), Expect = 1.2
 Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 5/75 (6%)

Query: 96  FYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNISSIVNDSE 155
           FY+ +       +     +      VNP+         T  +        + +++++   
Sbjct: 6   FYNLSIKGTIDQIDKTNNTYRQTIYVNPSGDNVIAPVLTGNLK----PNTDSNALIDQQN 61

Query: 156 PDWIKLYSFKEEYGL 170
              IK+Y       L
Sbjct: 62  TS-IKVYKVDNAADL 75


>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
          receptor delta, PPAR-DELTA {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 265

 Score = 28.4 bits (63), Expect = 1.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 37 TLLEAEKSNEKVHILSHIPPGSEDTMQVFQR 67
          TL +AEK      +++ +PP  E ++ VF R
Sbjct: 44 TLWQAEKGLVWKQLVNGLPPYKEISVHVFYR 74


>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 120

 Score = 26.2 bits (58), Expect = 3.3
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 137 VTDFDSYTYNISSIVNDSEPDWI----KLYSFKEEYGLES 172
             DFD   Y+IS+   D     +    K Y   + +G + 
Sbjct: 35  FADFDGVLYHISNPNGDKTKVMVSISLKFYKELQAHGADE 74


>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
           C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 298

 Score = 26.6 bits (58), Expect = 4.9
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 228 QGIPLTPERVCGTVLENSNCSVKNGPQVDWQVDTNYGTKVDRITAPSESRYLASGDEISI 287
            G  L P  +  +   + +     G        +  GTK   +       +L  GDE+ I
Sbjct: 218 NGCNLRPGDLLASGTISGSDPESFG---SMLELSWKGTKAIDVGQGQTRTFLLDGDEVII 274


>d1twfh_ b.40.4.8 (H:) RNA polymerase subunit RBP8 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 145

 Score = 25.1 bits (55), Expect = 9.4
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 11/59 (18%)

Query: 22 LYPVDPNDQLSW-LASTL-LEAEKSNEKVHILSHIPPGSEDTMQVFQREYRKIINRFEY 78
          L+PV   D L+  +AS+L LE   +N+     S  PP + D         R + + ++Y
Sbjct: 45 LFPVAAQDSLTVTIASSLNLEDTPANDSSATRSWRPPQAGD---------RSLADDYDY 94


>d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein,
           N-terminal domain {Black sea rod (Plexaura homomalla)
           [TaxId: 47982]}
          Length = 366

 Score = 25.7 bits (56), Expect = 9.7
 Identities = 4/11 (36%), Positives = 4/11 (36%)

Query: 363 HAKGNGARGHF 373
           H  G G  G  
Sbjct: 65  HTVGTGGIGEI 75


>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
          Length = 484

 Score = 26.0 bits (57), Expect = 10.0
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 363 HAKGNGARGHF 373
           HA+G G +G F
Sbjct: 52  HARGTGVKGEF 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.408 

Gapped
Lambda     K      H
   0.267   0.0633    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,520,325
Number of extensions: 72633
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 29
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)