BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16144
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0HA38|TT21B_MOUSE Tetratricopeptide repeat protein 21B OS=Mus musculus GN=Ttc21b PE=2
SV=1
Length = 1315
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%)
Query: 55 DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
DA Y A + ++ A+ KLA L+ KRY +AIDV +++AHP+YPK+ K I +
Sbjct: 1248 DAAFNYEMAWKHSNQTNPAVGYKLAFNYLKAKRYVDAIDVCHQVLEAHPTYPKIRKDILD 1307
Query: 115 KAMVHLR 121
KA LR
Sbjct: 1308 KARASLR 1314
>sp|Q7Z4L5|TT21B_HUMAN Tetratricopeptide repeat protein 21B OS=Homo sapiens GN=TTC21B PE=1
SV=2
Length = 1316
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 55 DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
DA + Y A + ++ A+ KLA L+ KRY ++ID+ +++AHP+YPK+ K I +
Sbjct: 1249 DAALNYEMAWKYSNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTYPKIRKDILD 1308
Query: 115 KAMVHLR 121
KA LR
Sbjct: 1309 KARASLR 1315
>sp|Q6INC1|TT21B_XENLA Tetratricopeptide repeat protein 21B OS=Xenopus laevis GN=ttc21b PE=2
SV=1
Length = 1312
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 55 DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
DA Y A S+ A+ +LA L+ K+Y +AID+ ++KAHP+YPK+ ++I
Sbjct: 1245 DAAANYRLAWDYSNQSNPAVGFRLAFNYLKDKKYVDAIDICHKVLKAHPTYPKIEREILA 1304
Query: 115 KAMVHLR 121
KA L+
Sbjct: 1305 KAQTSLK 1311
>sp|Q8NDW8|TT21A_HUMAN Tetratricopeptide repeat protein 21A OS=Homo sapiens GN=TTC21A PE=2
SV=3
Length = 1320
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 55 DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
DAV Y A + ++ A+ KLA L+ K++ EAI++ +++ HP YPK+ ++I E
Sbjct: 1253 DAVTNYKLAWKYSHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIREEILE 1312
Query: 115 KAMVHLR 121
KA LR
Sbjct: 1313 KARRSLR 1319
>sp|Q8C0S4|TT21A_MOUSE Tetratricopeptide repeat protein 21A OS=Mus musculus GN=Ttc21a PE=1
SV=2
Length = 1314
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 55 DAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFE 114
DA Y A + ++ A+ KLA L+ K++ +AI+V +++ HP YPK+ ++I E
Sbjct: 1247 DAATNYELAWKYSHQANPAIGFKLAFNYLKDKKFVDAIEVCHSVLTEHPKYPKIREEILE 1306
Query: 115 KAMVHLR 121
KA LR
Sbjct: 1307 KAQGSLR 1313
>sp|Q61LA1|TTC21_CAEBR Tetratricopeptide repeat protein 21 homolog OS=Caenorhabditis
briggsae GN=CBG09016 PE=3 SV=1
Length = 1323
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 60 YTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVH 119
Y +A + KLA LL+ +R I+ Q ++ +P YPK+ ++I +KA
Sbjct: 1260 YEKAFNTTNQKSCSFGYKLAFTLLKTRRLFLCIETCQKVLDINPQYPKIQREIMDKARGM 1319
Query: 120 LRT 122
+RT
Sbjct: 1320 IRT 1322
>sp|Q20255|TTC21_CAEEL Tetratricopeptide repeat protein 21 homolog OS=Caenorhabditis elegans
GN=ZK328.7/F40H6.3 PE=2 SV=3
Length = 1324
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 77 KLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMVHLRT 122
KLA L+ KR I+ Q ++ +P YPK+ K+I +KA +RT
Sbjct: 1279 KLAFTYLKAKRLFACIETCQKVLDLNPQYPKIKKEIMDKAKALIRT 1324
>sp|Q99747|SNAG_HUMAN Gamma-soluble NSF attachment protein OS=Homo sapiens GN=NAPG PE=1
SV=1
Length = 312
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 48 IYNLFPDDAVVQYTQACRIIGTSD-----LALHQKLASLLLRMKRYAEA---IDVSQTIM 99
I N+ P+ AV Y Q + + + L K + LL+R +R+ EA I + I
Sbjct: 125 IENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIY 184
Query: 100 KAHPSYPKVHKQIFEKAMVHL 120
K +YP +K+ + +VHL
Sbjct: 185 KEIENYPTCYKKTIAQVLVHL 205
>sp|Q9SPE5|SNAG_ARATH Gamma-soluble NSF attachment protein OS=Arabidopsis thaliana
GN=GSNAP PE=2 SV=1
Length = 291
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 22 LYLLPWRWEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACRII---GTSDLA--LHQ 76
LY+ R +P S L K +A + ++ PDDA+ YT AC I+ G +A L++
Sbjct: 100 LYVECGRAQPASDALGK-----AARALEDVKPDDAIQLYTDACEILEEDGRDQMAFDLYR 154
Query: 77 KLASLLLRMKRYAEA 91
A++ ++++++ +A
Sbjct: 155 ACANVYIKLEKFTDA 169
>sp|Q9CWZ7|SNAG_MOUSE Gamma-soluble NSF attachment protein OS=Mus musculus GN=Napg PE=1
SV=1
Length = 312
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 48 IYNLFPDDAVVQYTQACRIIGTSD-----LALHQKLASLLLRMKRYAEA---IDVSQTIM 99
I N+ P+ AV Y Q + + + L K + LL+R +R+ EA I + I
Sbjct: 125 IENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIY 184
Query: 100 KAHPSYPKVHKQIFEKAMVHL 120
K +YP +K+ + +VHL
Sbjct: 185 KEIENYPTCYKKTIAQVLVHL 205
>sp|P81127|SNAG_BOVIN Gamma-soluble NSF attachment protein OS=Bos taurus GN=NAPG PE=1
SV=3
Length = 312
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 48 IYNLFPDDAVVQYTQACRIIGTSD-----LALHQKLASLLLRMKRYAEA---IDVSQTIM 99
I N+ P+ AV Y Q + + + L K + LL+R +R+ EA I + I
Sbjct: 125 IENVDPEKAVQLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAAISIQKEKNIY 184
Query: 100 KAHPSYPKVHKQIFEKAMVHL 120
K +YP +K+ + +VHL
Sbjct: 185 KEIENYPTCYKKTIAQVLVHL 205
>sp|Q1GTN0|ISPDF_SPHAL Bifunctional enzyme IspD/IspF OS=Sphingopyxis alaskensis (strain
DSM 13593 / LMG 18877 / RB2256) GN=ispDF PE=3 SV=1
Length = 392
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 23 YLLPWRWEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACR 65
Y LP W G+ ++Q +++A + +PDDAVV A R
Sbjct: 71 YPLPEGWMAADPGVERQQSVANALSALTDWPDDAVVLVHDAAR 113
>sp|Q91145|COCA1_NOTVI Collagen alpha-1(XII) chain (Fragment) OS=Notophthalmus viridescens
PE=2 SV=1
Length = 929
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 5 SVDTMQIIQTIAEWHFLLYLLPWRWEPLSAGLRKKQYISS---ATNIYNLFPD 54
+ D+ ++ T A + L Y + +R P++ G RK+ + AT +YNLFPD
Sbjct: 168 TTDSFKVGWTPAPGNVLRYRIAYR--PVAGGERKEVTVQGNERATTLYNLFPD 218
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 29 WEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRY 88
W L +G K + I A N++ L P+ VV +T + G + + SL RM
Sbjct: 82 WNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVK--GYMQEGMVGEAESLFWRM--- 136
Query: 89 AEAIDVSQTIM 99
E +VS T+M
Sbjct: 137 PERNEVSWTVM 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,796,724
Number of Sequences: 539616
Number of extensions: 1257031
Number of successful extensions: 4375
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4361
Number of HSP's gapped (non-prelim): 20
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)