RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16144
(122 letters)
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 38.0 bits (89), Expect = 2e-04
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 10/77 (12%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI- 112
A+ + + D L + A ++ +AI + K + +I
Sbjct: 137 TAAITFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195
Query: 113 --------FEKAMVHLR 121
E ++ +R
Sbjct: 196 TLYYQLGDHELSLSEVR 212
Score = 33.4 bits (77), Expect = 0.011
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIF 113
DA+ Q+ A + +A + + A++ L M + A+ ++ + Q
Sbjct: 20 ADALSQFHAAVDGDPDNYIAYY-RRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ-- 76
Query: 114 EKAMVHLR 121
+ + L+
Sbjct: 77 -RGHLLLK 83
Score = 32.2 bits (74), Expect = 0.024
Identities = 9/61 (14%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIF 113
+A+ ++ ++ + AL + A L + Y EAI + + + + ++ + +
Sbjct: 289 VEAIRICSEVLQMEPDNVNALKDR-AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347
Query: 114 E 114
+
Sbjct: 348 K 348
Score = 31.5 bits (72), Expect = 0.055
Identities = 8/60 (13%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 54 DDAVVQYTQACRI---IGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK 110
DA +Y + + + +++ + ++ EAI + +++ P K
Sbjct: 251 TDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310
Score = 31.1 bits (71), Expect = 0.074
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
A+ T+ + A Q LLL+ + EA D + ++K++PS +
Sbjct: 54 KAALPDLTKVIALKMDFTAARLQ-RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEK 108
Score = 26.9 bits (60), Expect = 2.0
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 54 DDAVVQYTQACRI-----------IGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAH 102
+ ++ + + ++ L + A L+R RY +A +++MK
Sbjct: 205 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264
Query: 103 PSYPKVHKQIFE 114
PS + + E
Sbjct: 265 PSVAEYTVRSKE 276
Score = 25.7 bits (57), Expect = 4.5
Identities = 6/57 (10%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
P + + ++ +++ ++ + A Y AI I++ ++
Sbjct: 102 PSEQEEKEAES-QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 37.4 bits (87), Expect = 4e-04
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 10/77 (12%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI- 112
A+ + + D L + A ++ +AI + K + +I
Sbjct: 160 TAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218
Query: 113 --------FEKAMVHLR 121
E ++ +R
Sbjct: 219 TLYYQLGDHELSLSEVR 235
Score = 34.7 bits (80), Expect = 0.004
Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIF 113
DA+ Q+ A + +A + + A++ L M + A+ +++ + Q
Sbjct: 43 ADALSQFHAAVDGDPDNYIAYY-RRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ-- 99
Query: 114 EKAMVHLR 121
+ + L+
Sbjct: 100 -RGHLLLK 106
Score = 32.3 bits (74), Expect = 0.023
Identities = 10/61 (16%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIF 113
+A+ ++ ++ + AL + A L + Y EAI +T + + + ++ + +
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDR-AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370
Query: 114 E 114
+
Sbjct: 371 K 371
Score = 30.0 bits (68), Expect = 0.15
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK 110
A+ T+ ++ A Q LLL+ + EA D + ++K++PS + +
Sbjct: 77 KAALPDLTKVIQLKMDFTAARLQ-RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKE 132
Score = 29.7 bits (67), Expect = 0.21
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 54 DDAVVQYTQACRI---IGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
DA +Y + I + +++ + ++ EAI V +++ P
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332
Score = 26.2 bits (58), Expect = 3.0
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 54 DDAVVQYTQACRI-----------IGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAH 102
+ ++ + + ++ L + A L+R RY +A +++MK
Sbjct: 228 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287
Query: 103 PSYPKVHKQIFE 114
PS + + E
Sbjct: 288 PSIAEYTVRSKE 299
Score = 26.2 bits (58), Expect = 3.3
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
P + + Q+ ++I + ++ + A Y AI I++ ++
Sbjct: 125 PSENEEKEAQS-QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180
Score = 25.8 bits (57), Expect = 3.9
Identities = 6/58 (10%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK 110
P A+ A ++ + K+++L ++ + ++ + +K + +
Sbjct: 193 PRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 249
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 36.4 bits (84), Expect = 0.001
Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 22/114 (19%)
Query: 16 AEWHFLLYLLPWRWEPLSAGLRKKQYISSATNIYN----LF----PDDAVVQYTQACRII 67
AE + L+L + S + ++ + +T + F A++QY + +
Sbjct: 118 AELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL 177
Query: 68 GTSD--------------LALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPK 107
LA H LA L+++ ++ AI+ ++ + K
Sbjct: 178 EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 231
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 35.3 bits (81), Expect = 0.002
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 53 PDDAVVQYTQACRIIGTSD-----LALHQKLASLLLRMKRYAEAIDVSQ---TIMKAHPS 104
AV Y QA + + L K + LL+R +++ EA Q ++ K +
Sbjct: 131 LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 190
Query: 105 YPKVHKQIFEKAMVHL 120
YP +K+ + +V L
Sbjct: 191 YPTCYKKCIAQVLVQL 206
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 34.1 bits (78), Expect = 0.007
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI 112
++Q A R D LA L M Q + HP +P+ ++
Sbjct: 5 GPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 33.0 bits (76), Expect = 0.013
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 53 PDDAVVQYTQACRIIGTSDLA--------LHQKLASLLLRMKRYAEAIDVSQTIMKAHPS 104
A + A I L L + ++K+YAEA+D + + P
Sbjct: 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268
Query: 105 YPKVHKQI---------FEKAMVHLRT 122
+ I FE A+ + T
Sbjct: 269 NASTYSAIGYIHSLMGNFENAVDYFHT 295
Score = 28.4 bits (64), Expect = 0.51
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDV-SQTIMKAHPSYPKVHKQI 112
A ++QA I +H+ + + + + A + K +V
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHE-VGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234
Query: 113 FEKAMVHL 120
+E + +L
Sbjct: 235 WEPLLNNL 242
Score = 27.6 bits (62), Expect = 0.90
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+A+ + QA +I + + + + M + A+D T +
Sbjct: 253 AEALDYHRQALVLIPQNAST-YSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307
Score = 26.9 bits (60), Expect = 1.7
Identities = 5/39 (12%), Positives = 13/39 (33%)
Query: 71 DLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+L + LA + ++ +M+ P +
Sbjct: 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL 59
Score = 26.5 bits (59), Expect = 2.5
Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+ L L+ + + E +S ++ +PS P
Sbjct: 39 KMCYKLTSVVMEKDPFHASCLPV-HIGTLVELNKANELFYLSHKLVDLYPSNPVSW 93
Score = 25.3 bits (56), Expect = 7.0
Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
D A+ Y A +++ L + A + P P V
Sbjct: 142 DQAMAAYFTAAQLMKGCHLP-MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVM 196
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 32.9 bits (76), Expect = 0.013
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+ A Q R + L L+S+ + +R + S +K +P + +
Sbjct: 16 EAAERHCMQLWRQEPDNTGVLLL-LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70
Score = 31.7 bits (73), Expect = 0.040
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLA-LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+ AV Y A + DL + L +LL + R EA ++ P++
Sbjct: 118 EGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
Score = 30.6 bits (70), Expect = 0.095
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+A+ Y A R+ + LA+ L+ A+ + ++ +P V
Sbjct: 84 QEAIEHYRHALRLKPDFIDG-YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138
Score = 29.8 bits (68), Expect = 0.19
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
D AV Y +A + + H LA + AID + ++ P +P +
Sbjct: 220 DRAVAAYLRALSLSPNHAVV-HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274
Score = 29.0 bits (66), Expect = 0.30
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLA-LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
D + T A + LA + L ++ + EAI+ + ++ P + +
Sbjct: 50 DRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY 104
Score = 29.0 bits (66), Expect = 0.31
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLA-LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
D A+ Y +A + + LA+ L AEA D T ++ P++
Sbjct: 254 DLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308
Score = 28.7 bits (65), Expect = 0.40
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLAL-HQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
++AV Y +A + + A H LAS+L + + EA+ + ++ P++ +
Sbjct: 322 EEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
Score = 28.3 bits (64), Expect = 0.53
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 77 KLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK 110
+LA + + A + + P V
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLL 37
Score = 28.3 bits (64), Expect = 0.62
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLAL-HQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+A Y A R+ A LA++ EA+ + + ++ P + H
Sbjct: 288 AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342
Score = 26.7 bits (60), Expect = 1.9
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLA-LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
A+ + +A + + + L ++L + + A+ + P++ VH
Sbjct: 186 WLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240
Score = 26.0 bits (58), Expect = 3.2
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
++A Y +A +A L + AI + + P++ +
Sbjct: 152 EEAKACYLKAIETQPNFAVA-WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 32.4 bits (74), Expect = 0.022
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
Query: 36 LRKKQY---ISSATNIYNLFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAI 92
+ Q +S L D + Y L +LA + + Y +A
Sbjct: 15 IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAY 74
Query: 93 DVSQTIMKAHPSYPKVH 109
+ +++ P+
Sbjct: 75 LFYKELLQKAPNNVDCL 91
Score = 28.9 bits (65), Expect = 0.29
Identities = 6/56 (10%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
D A + Y + + +++ + A + + + +A+ + + I++ +
Sbjct: 71 DKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN 125
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 32.1 bits (73), Expect = 0.029
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 15/84 (17%)
Query: 54 DDAVVQYTQACRIIGTSDL------ALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPK 107
A+ + A ++ + A L ++K Y AID + +
Sbjct: 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551
Query: 108 VHKQI---------FEKAMVHLRT 122
VH I A+ HL
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHE 575
Score = 30.6 bits (69), Expect = 0.12
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 1/93 (1%)
Query: 17 EWHFLLYLLPWRWEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACRIIGTSDLALHQ 76
EW +L L + A + Y+ + Y + + S L
Sbjct: 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLC 310
Query: 77 KLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
A L R+ + + ++ I++ P V+
Sbjct: 311 -KADTLFVRSRFIDVLAITTKILEIDPYNLDVY 342
Score = 28.7 bits (64), Expect = 0.45
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
D + T+ I +L ++ + L + +S ++ HP
Sbjct: 322 IDVLAITTKI-LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376
Score = 26.0 bits (57), Expect = 4.5
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
D A+ YT A R+ + L L +++ A + Q+ P +
Sbjct: 424 DQAISAYTTAARLFQGTHLPYLF-LGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 32.1 bits (72), Expect = 0.032
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
++AV Y +A + A LAS+L + + EA+ + ++ P++ +
Sbjct: 25 IEEAVRLYRKALEVFPEFAAAHSN-LASVLQQQGKLQEALMHYKEAIRISPTFADAY 80
Score = 30.9 bits (69), Expect = 0.093
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
A+ YT+A +I A LAS+ EAI +T +K P +P +
Sbjct: 93 VQGALQCYTRAIQINPAFADAHSN-LASIHKDSGNIPEAIASYRTALKLKPDFPDAY 148
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 31.7 bits (72), Expect = 0.033
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIF 113
++A V + C ++ LA++ +++ +A D+ + F
Sbjct: 53 EEAEVFFRFLCIY-DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV---F 108
Query: 114 EKAMVHLR 121
LR
Sbjct: 109 HTGQCQLR 116
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 31.7 bits (72), Expect = 0.036
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 54 DDAVVQYTQACRIIGTSD---------------LALHQKLASLLLRMKRYAEAIDVSQTI 98
++A+V+Y +A ++ ++ + LA+ + K Y +AID + +
Sbjct: 55 NEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114
Query: 99 MKAHPSYPK 107
+K + K
Sbjct: 115 LKIDKNNVK 123
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 31.2 bits (71), Expect = 0.054
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+A + +A + + Q LA LL + ++ E+ P+ P+V
Sbjct: 327 KNAKEDFQKAQSLNPENVYPYIQ-LACLLYKQGKFTESEAFFNETKLKFPTLPEVP 381
Score = 30.1 bits (68), Expect = 0.13
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
DA V ++ + + LA L + E Q + +P YP +
Sbjct: 260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTY 313
Score = 30.1 bits (68), Expect = 0.18
Identities = 6/56 (10%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
++A+ Y A + + + +++ + + I+ + ++ P + K
Sbjct: 42 NEAIKYYQYAIELDPNEPVF-YSNISACYISTGDLEKVIEFTTKALEIKPDHSKAL 96
Score = 29.3 bits (66), Expect = 0.27
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 54 DDAVVQYTQACRI---IGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+ Q + + + + K + EAI Q ++ P+ P +
Sbjct: 4 MNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFY 62
Score = 29.3 bits (66), Expect = 0.31
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+ A+ T+AC + S+ A LA L L+M++ EAI++ + + +
Sbjct: 445 NAAIKLLTKACELDPRSEQA-KIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499
Score = 28.1 bits (63), Expect = 0.75
Identities = 7/56 (12%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
++ + + T A +L + AI + K+H
Sbjct: 361 TESEAFFNETKLKFPTLPEV-PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415
Score = 28.1 bits (63), Expect = 0.80
Identities = 7/78 (8%), Positives = 21/78 (26%), Gaps = 10/78 (12%)
Query: 53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI 112
+ + +A + + + ++ Y A + Q +P + Q+
Sbjct: 292 SQEFFKFFQKAVDLNPEYPPTYYH-RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350
Query: 113 ---------FEKAMVHLR 121
F ++
Sbjct: 351 ACLLYKQGKFTESEAFFN 368
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 31.2 bits (70), Expect = 0.059
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 17/80 (21%)
Query: 55 DAVVQYTQACRIIGTSD--------------LALHQKLASLLLRMKRYAEAIDVSQTIMK 100
AV+QY + + LA LA L+++ Y +A++ +
Sbjct: 286 QAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345
Query: 101 AHPSYPKVHKQIFEKAMVHL 120
+ K + + L
Sbjct: 346 LDSANEKGL---YRRGEAQL 362
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 31.3 bits (71), Expect = 0.062
Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAI-DVSQTIMKAHPSYPKVH 109
DDA+ Y A + D + L++ + + + + ++ + + P Y KV
Sbjct: 23 DDAIKYYNWALEL--KEDPVFYSNLSACYVSVGDLKKVVEMSTKAL-ELKPDYSKVL 76
Score = 31.3 bits (71), Expect = 0.068
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
D A + +A + + Q LA L R ++ + + + P P+V
Sbjct: 321 DQAGKDFDKAKELDPENIFPYIQ-LACLAYRENKFDDCETLFSEAKRKFPEAPEVP 375
Score = 30.9 bits (70), Expect = 0.083
Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
A +A + + + +A ++ E + +K + V+
Sbjct: 254 LGAHEDIKKAIEL--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY 307
Score = 29.3 bits (66), Expect = 0.25
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI 112
+A +A ++ S+ A LA + L+ + EAI + + + + + I
Sbjct: 432 IEATNLLEKASKLDPRSEQA-KIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489
Score = 27.8 bits (62), Expect = 0.83
Identities = 6/78 (7%), Positives = 22/78 (28%), Gaps = 10/78 (12%)
Query: 53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI 112
+ + +A ++ + + + + ++ Y +A + P + Q+
Sbjct: 286 STEYYNYFDKALKLDSNNSSVYYHR-GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
Query: 113 ---------FEKAMVHLR 121
F+
Sbjct: 345 ACLAYRENKFDDCETLFS 362
Score = 27.0 bits (60), Expect = 1.6
Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
DD +++A R + A +L + +A+ ++ ++
Sbjct: 355 DDCETLFSEAKRKFPEAPEV-PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.086
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 15/65 (23%)
Query: 26 PWRWEPLSAGLRKKQYISSATNIYN---LFPDDAVVQYTQACRIIGTSDLALHQKLASLL 82
P + E + + YI +YN +F V R+ + KL L
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV------SRL------QPYLKLRQAL 144
Query: 83 LRMKR 87
L ++
Sbjct: 145 LELRP 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 30.1 bits (68), Expect = 0.089
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIF 113
DDA + C + D L + + Y +A+ + P+ F
Sbjct: 35 DDAQKIFQALCML-DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP---F 90
Query: 114 EKAMVHLR 121
A HL+
Sbjct: 91 HAAECHLQ 98
Score = 25.9 bits (57), Expect = 3.2
Identities = 4/39 (10%), Positives = 11/39 (28%)
Query: 71 DLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
L L + ++ +A + Q + +
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF 55
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 30.7 bits (69), Expect = 0.090
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI 112
+ +A + + A R +AI++ + ++ P+ +H QI
Sbjct: 230 GEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287
Score = 25.3 bits (55), Expect = 5.9
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMK----RYAEAIDVSQTIMKAHPSYPKVH 109
+A+ QA R+ + L LA L +M+ E + + ++ P V
Sbjct: 192 QNAIDPLRQAIRL-NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250
Query: 110 KQI---------FEKAMVHLR 121
+ +KA+ L+
Sbjct: 251 RSAAKFYRRKDEPDKAIELLK 271
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.11
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 7/27 (25%)
Query: 76 QKLASLLLRMKRYAE----AIDVSQTI 98
+KL + +K YA+ A+ + T+
Sbjct: 23 KKLQA---SLKLYADDSAPALAIKATM 46
Score = 25.7 bits (55), Expect = 3.6
Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 38 KKQYISSATNIYNLF-PDDA 56
+KQ + L+ D A
Sbjct: 18 EKQALKKLQASLKLYADDSA 37
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 29.7 bits (67), Expect = 0.12
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 53 PDDAVVQYTQACRI-IGTSDLAL-HQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
AV Y +A + DLA + L S + Y +A V +K P++ +
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Score = 29.3 bits (66), Expect = 0.17
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI 112
A + + AL A +L + RY + +++ I+ +
Sbjct: 43 YRKAEAVLANGVKQ-FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS-- 99
Query: 113 FEKAM 117
+++A+
Sbjct: 100 YKQAI 104
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 29.6 bits (67), Expect = 0.12
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+ GT ++ L L +++ A+ + + P+Y
Sbjct: 2 QAITERLEAMLAQ-GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAW 56
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 30.4 bits (68), Expect = 0.13
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 16/69 (23%)
Query: 55 DAVVQYTQACRIIGTSD----------------LALHQKLASLLLRMKRYAEAIDVSQTI 98
+A+ QY A +G H +A+ L+++KRY EAI +
Sbjct: 197 EAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256
Query: 99 MKAHPSYPK 107
+ PK
Sbjct: 257 LTEEEKNPK 265
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 30.0 bits (68), Expect = 0.17
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 29 WEPLSAGLRKKQYISSATNIYNLFPDDAVVQYTQACRIIG-TSDLALHQKLASLLLRMKR 87
+ + +S + ++ + Y +A G D L L L
Sbjct: 170 VKNKKGSPGLTRRMSKSPVDSSVL-EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228
Query: 88 YAEAIDVSQTIMKAHPSYPKVH 109
+ AID + P +
Sbjct: 229 FNRAIDAFNAALTVRPEDYSLW 250
Score = 26.6 bits (59), Expect = 2.2
Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
++ A D Q L + AI Q ++ P+ K
Sbjct: 82 PVTILFMEAAILQ-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL 136
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 29.6 bits (66), Expect = 0.21
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 9/79 (11%)
Query: 53 PDDAVVQYTQACRIIGTSD-----LALHQKLASLLLRMKRYAEAIDVSQTIMKA----HP 103
A+ Y A K A L +Y EA D+ ++K+
Sbjct: 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 104 SYPKVHKQIFEKAMVHLRT 122
S + +K + L
Sbjct: 194 SQWSLKDYFLKKGLCQLAA 212
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 28.8 bits (65), Expect = 0.24
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+AV Y Q + + A L+++ Y +AI + Q ++ + V
Sbjct: 21 REAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 29.1 bits (65), Expect = 0.24
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 1/59 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI 112
+DA + C + D L + M +Y AI P+
Sbjct: 38 EDAHXVFQALCVL-DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.29
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 24 LLPWRWEPLSAGLRKKQYISSATNIYNLFPDDAVVQ---YTQACRIIGTSDLALHQKLAS 80
+L W P + K Y+ S I P V+Q Y +++G + L L
Sbjct: 215 ILEWLENPSNTP--DKDYLLSIP-IS--CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 81 LLLRMKRY--AEAIDVSQT 97
+ A AI + +
Sbjct: 270 ATGHSQGLVTAVAIAETDS 288
Score = 25.8 bits (56), Expect = 4.7
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 95 SQTI---MKAHPSYPKVHKQIFEKAMVHLR 121
SQ M + + + ++ +A H +
Sbjct: 1626 SQEQGMGMDLYKTSKAA-QDVWNRADNHFK 1654
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 29.2 bits (66), Expect = 0.31
Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Query: 39 KQYISSATNIYNLFPDDAVVQYTQACRI---IGTSDLALHQKLASLLLRMKRYAEAIDVS 95
+ + A + + D Y + + D + L+ A+ +
Sbjct: 28 AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87
Query: 96 QTIMKAHPSYPKVH 109
+ ++ P + +
Sbjct: 88 EAAVQQDPKHMEAW 101
Score = 27.3 bits (61), Expect = 1.2
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLA-LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+ + A R+ TS + L L Y +A+D + P+ +
Sbjct: 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 254
Score = 26.9 bits (60), Expect = 1.8
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+AV+ + A + + Q L + ++ AI + ++ P
Sbjct: 81 PNAVLLFEAAVQQ-DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 135
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 28.8 bits (65), Expect = 0.41
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 75 HQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+ A L + YAEAI+V + + P ++
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIY 40
Score = 26.5 bits (59), Expect = 2.3
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
A+ QY A T+ L ++ ++ S + AI + ++ + PKV
Sbjct: 91 SLAIQQYQAAVDR-DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVF 145
Score = 24.9 bits (55), Expect = 7.1
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
A+ + R T ++ L K Y +A +++ P+ +
Sbjct: 125 PLAIQYMEKQIRPTTTDPKVFYE-LGQAYYYNKEYVKADSSFVKVLELKPNIYIGY 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 28.5 bits (64), Expect = 0.43
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 17/71 (23%)
Query: 54 DDAVVQYTQACRIIGTSD-----------------LALHQKLASLLLRMKRYAEAIDVSQ 96
+A+ Y A + T + L+ ++ L + EA + S
Sbjct: 28 KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87
Query: 97 TIMKAHPSYPK 107
++K + K
Sbjct: 88 EVLKREETNEK 98
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 28.7 bits (65), Expect = 0.44
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAI-DVSQTIMKAHPSYPKVHKQI 112
D+A+ Y +A + D+ A+ Y AI ++ + + +K I
Sbjct: 22 DEAIEHYNKAWEL--HKDITYLNNRAAAEYEKGEYETAISTLNDAV-EQGREMRADYKVI 78
Score = 24.8 bits (55), Expect = 8.4
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAI-DVSQTIMKAHPSYPKVH 109
+AV YT+ + + A+ L ++ + EAI D ++ I + P++ + +
Sbjct: 156 PNAVKAYTEMIKRAPEDARG-YSNRAAALAKLMSFPEAIADCNKAI-EKDPNFVRAY 210
Score = 24.8 bits (55), Expect = 9.5
Identities = 4/57 (7%), Positives = 15/57 (26%), Gaps = 3/57 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAI-DVSQTIMKAHPSYPKVH 109
+ + + + + + A+ ++ I K P + +
Sbjct: 122 EKELKKAEAEAYVNPEKAEEARLE-GKEYFTKSDWPNAVKAYTEMI-KRAPEDARGY 176
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 28.4 bits (63), Expect = 0.62
Identities = 10/59 (16%), Positives = 19/59 (32%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI 112
+ + Q + AL K +L + EA + +K P + Q+
Sbjct: 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQL 143
Score = 28.1 bits (62), Expect = 0.73
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 54 DDAVVQYTQACRIIGTS--DLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
A+ Y QA ++ + + LH A+L + Y EA++ P++P+
Sbjct: 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 27.8 bits (62), Expect = 0.63
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+A + + C+ + A + L ++ AI P VH
Sbjct: 34 AEAALAFEAVCQKEPEREEA-WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH 88
Score = 27.4 bits (61), Expect = 0.79
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYP 106
A++ A + D+A+H LA A+ + + + P Y
Sbjct: 68 GLAIIALNHARML-DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 27.2 bits (61), Expect = 1.2
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 53 PDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
P A + ++ R+ + +A LL + + Y A + +
Sbjct: 157 PAQAKEYFEKSLRLNRNQPSVALE-MADLLYKEREYVPARQYYDLFAQGGGQNARSL 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 26.5 bits (59), Expect = 1.3
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 53 PDDAVVQYTQACRIIGTSDLAL-HQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
A+ + + D + L L R+ R +AID ++
Sbjct: 23 ASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78
Score = 25.3 bits (56), Expect = 3.2
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 71 DLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHK 110
D LA L+ + A+ + + +++ P Y +
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYY 45
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 26.5 bits (59), Expect = 2.3
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+ A + +D LH L L Y A + ++ P ++
Sbjct: 155 RECRTLLHAALEM-NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW 209
Score = 25.3 bits (56), Expect = 5.9
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
A++ A + D+A+H LA A+ + + + P Y ++
Sbjct: 72 GLAIIALNHARML-DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLG 126
Score = 24.6 bits (54), Expect = 9.8
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLA-LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
D A +A + D A L KL + L R EA+D + +P Y +V
Sbjct: 189 DSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 26.6 bits (58), Expect = 2.3
Identities = 11/61 (18%), Positives = 22/61 (36%)
Query: 47 NIYNLFPDDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYP 106
N LF D+A Y +A + ++ L+ A +Y + + ++ P
Sbjct: 74 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP 133
Query: 107 K 107
Sbjct: 134 T 134
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 26.1 bits (58), Expect = 2.8
Identities = 5/56 (8%), Positives = 12/56 (21%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
A ++ A + LA + + +A +
Sbjct: 130 GLAEAYLKRSLAAQPQFPPAFKE-LARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184
Score = 25.3 bits (56), Expect = 5.0
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 74 LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+ +LA +R + Y +A + +K+ P
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAW 45
Score = 24.9 bits (55), Expect = 7.0
Identities = 7/57 (12%), Positives = 17/57 (29%), Gaps = 3/57 (5%)
Query: 54 DDAVVQYTQACRIIGTSDLAL-HQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
A A + L A + +K +A + + + P +++
Sbjct: 25 RQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN 79
>1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer,
PSI, protein structu initiative; HET: MSE; 1.60A
{Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A*
1pt7_A 1pt5_A 1pt8_A*
Length = 428
Score = 26.0 bits (58), Expect = 3.5
Identities = 4/46 (8%), Positives = 11/46 (23%)
Query: 59 QYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPS 104
+ C+ IG + ++ R + +
Sbjct: 278 NWENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDK 323
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 25.9 bits (56), Expect = 3.6
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 71 DLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
L +LL++ R A + +
Sbjct: 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ 167
Score = 25.9 bits (56), Expect = 4.7
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 53 PDDAVVQYTQACRIIGTSDLA-LHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQ 111
D A + + + L L SL ++ +A + Q + +
Sbjct: 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLL-- 203
Query: 112 IFEKAMVHLR 121
+A H+
Sbjct: 204 -NGQAACHMA 212
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 25.8 bits (56), Expect = 4.0
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 59 QYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEKAMV 118
TS LA+ A+ YA+A++ + A H + KA+V
Sbjct: 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE----HLVAWMKAVV 144
Query: 119 HLRT 122
+
Sbjct: 145 YGAA 148
>2vjq_A Formyl-coenzyme A transferase; class III COA transferase; HET: EPE;
1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A*
2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A*
2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A*
Length = 428
Score = 26.1 bits (58), Expect = 4.0
Identities = 7/70 (10%), Positives = 17/70 (24%), Gaps = 14/70 (20%)
Query: 49 YNLFP-------DDAVV-------QYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDV 94
+ D+ V + Q C +I + + R+ + +
Sbjct: 264 GWMLKCKGWETDADSYVYFTIAANMWPQICDMIDKPEWKDDPAYNTFEGRVDKLMDIFSF 323
Query: 95 SQTIMKAHPS 104
+T
Sbjct: 324 IETKFADKDK 333
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 25.5 bits (56), Expect = 5.1
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 71 DLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSY 105
D AL +LA L ++ R EA+++ ++ +
Sbjct: 218 DAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold,
structural genomics, NPPSFA; 2.31A {Methanocaldococcus
jannaschii}
Length = 157
Score = 25.2 bits (56), Expect = 5.5
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 63 ACRIIGTSDLALHQKLASLLLRMKRYAEA 91
A I+ D + +KL +MK+ A
Sbjct: 119 ALEILALKDENIAKKLIEYREKMKKKVYA 147
>3ubm_A COAT2, formyl-COA:oxalate COA-transferase; HET: COA; 1.99A
{Acetobacter aceti}
Length = 456
Score = 25.3 bits (56), Expect = 7.0
Identities = 7/46 (15%), Positives = 12/46 (26%)
Query: 59 QYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPS 104
+ C IG + A K + R E + +
Sbjct: 315 DWGPTCEAIGKPEWATDPKYNTAKARETHMFEIFAAIEKAIADKTK 360
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 25.1 bits (55), Expect = 7.1
Identities = 4/56 (7%), Positives = 10/56 (17%), Gaps = 1/56 (1%)
Query: 54 DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
+ QA + + ++ + V P
Sbjct: 293 QRLLPVLCQAHGL-TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 347
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine
biosynthesis, lyase; 1.74A {Treponema denticola} PDB:
3rgg_A*
Length = 159
Score = 24.9 bits (55), Expect = 7.7
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 63 ACRIIGTSDLALHQKLASLLLRMKRYAEA 91
A RI D + + S + +
Sbjct: 124 AARIFSLYDKEIADSVKSYMESNAQKIIE 152
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta
protein, structural genomics, PSI-2, protein initiative;
1.70A {Mycobacterium tuberculosis}
Length = 174
Score = 24.5 bits (54), Expect = 8.6
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 63 ACRIIGTSDLALHQKLASLLLRMKRYAEA 91
A R++G ++ L ++ + R+ A
Sbjct: 131 AVRMLGAANPQLRARIVAFQDRLADVVAA 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.133 0.401
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,826,865
Number of extensions: 93149
Number of successful extensions: 461
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 155
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)