RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16144
         (122 letters)



>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 388

 Score = 30.4 bits (67), Expect = 0.044
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 54  DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQI 112
           + A     Q  R    +   L   L+S+  + +R   +   S   +K +P   + +  +
Sbjct: 16  EAAERHCMQLWRQEPDNTGVLLL-LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73



 Score = 29.3 bits (64), Expect = 0.12
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 54  DDAVVQYTQACRIIGTSDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
           ++AV  Y +A  +      A H  LAS+L +  +  EA+   +  ++  P++   +
Sbjct: 322 EEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376



 Score = 25.0 bits (53), Expect = 2.7
 Identities = 5/33 (15%), Positives = 10/33 (30%)

Query: 77  KLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
           +LA    +   +  A      + +  P    V 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVL 36



 Score = 24.2 bits (51), Expect = 5.0
 Identities = 6/35 (17%), Positives = 14/35 (40%)

Query: 75  HQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
              LA++        EA+ + +  ++  P +   H
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342


>d1mkia_ e.3.1.2 (A:) Probable glutaminase YbgJ {Bacillus subtilis
           [TaxId: 1423]}
          Length = 328

 Score = 24.8 bits (54), Expect = 2.9
 Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 41  YISSATNIYNLFPDDAVVQYTQACRIIGTS-DLA 73
           Y+     +     ++ +  Y + C +  T+ D+A
Sbjct: 184 YLKETNFLEA-EVEETLEVYLKQCAMESTTEDIA 216


>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
          Length = 128

 Score = 23.7 bits (50), Expect = 5.4
 Identities = 4/35 (11%), Positives = 12/35 (34%)

Query: 75  HQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVH 109
            ++L +   + K +  A+       +  P+     
Sbjct: 7   EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYI 41


>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
           domain {Simian virus 40 [TaxId: 10633]}
          Length = 362

 Score = 23.5 bits (50), Expect = 9.7
 Identities = 10/46 (21%), Positives = 18/46 (39%)

Query: 70  SDLALHQKLASLLLRMKRYAEAIDVSQTIMKAHPSYPKVHKQIFEK 115
           ++ A+  K   +LL +  Y E     +  +K        H +  EK
Sbjct: 9   TEYAMETKCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHEK 54


>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
           carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
          Length = 159

 Score = 23.4 bits (50), Expect = 9.8
 Identities = 5/25 (20%), Positives = 9/25 (36%)

Query: 63  ACRIIGTSDLALHQKLASLLLRMKR 87
           A  I+   + AL  +L +       
Sbjct: 128 AASILALYNPALAARLETWRALQTA 152


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.133    0.401 

Gapped
Lambda     K      H
   0.267   0.0440    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 444,183
Number of extensions: 17285
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 15
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.6 bits)