BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16147
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Query: 122 MSSNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKH 181
S+ +++ A GE + C +C K F++ LA H+ H+G++PYKC EC K+F K
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKK 63
Query: 182 HLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMNHRYSYCKPY 225
LT H+R H+GEKP++C +C K FS + H ++ KPY
Sbjct: 64 DLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPY 106
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 14/192 (7%)
Query: 24 MSSNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSVLQKCSSSYNYPRHSICN 83
S+ +++ A GE + C +C K F++ LA H+ H+ + Y P C
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEK----PYKCPE---CG 56
Query: 84 RPTASYPELSDMGSLEGDESLDRMDEDSSERKLKSRLMMSSNGTMSCADDNSGEGQFLCD 143
+ + +L+ E + E ++ L ++GE + C
Sbjct: 57 KSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQR-------THTGEKPYACP 109
Query: 144 QCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLK 203
+C K F++ + L H+ H+G++PYKC EC K+F + +L H+R H+GEKP++C +C K
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169
Query: 204 RFSHSGSYSQHM 215
FS + + H
Sbjct: 170 SFSRRDALNVHQ 181
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
++GE + C +C K F++ ++L H+ H+G++PY C EC K+F HL H+R H+GE
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 194 KPFQCCKCLKRFSHSGSYSQHMNHRYSYCKPYR 226
KP++C +C K FS + H ++ KPY+
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQR-THTGEKPYK 163
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 40/61 (65%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
++GE + C +C K F++ +L H+ H+G++PYKC EC K+F + L H+R H+G+
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Query: 194 K 194
K
Sbjct: 188 K 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 52/79 (65%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPF 196
E + C +C K F++ S+L +H+ H+G++PYKC EC K+F L +H+R H+GEKP+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 197 QCCKCLKRFSHSGSYSQHM 215
+C +C K FS S S+H
Sbjct: 62 KCPECGKSFSRSDHLSRHQ 80
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+GE + C +C K F++ S L +H+ H+G++PYKC EC K+F HL+ H+R H +K
Sbjct: 28 TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
+ +SG+ + C QC K F S RH H G RPY C C K FK KHHL H ++H
Sbjct: 2 SSGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 191 SGEKPFQCCKCLKRFSHSGSYSQHMN 216
+G KP++C C KRF S+ +H+
Sbjct: 61 TGIKPYECNICAKRFMWRDSFHRHVT 86
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
+ CD+ F++ SL RH H+GQ+P++C C + F HLT H R H+GEKPF C C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 203 KRFSHSGSYSQH 214
++F+ S +H
Sbjct: 70 RKFARSDERKRH 81
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 165 QRPYKC-VE-CPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMN 216
+RPY C VE C + F LT H R+H+G+KPFQC C++ FS S + H+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
++G+ F C C + F++ L H H+G++P+ C C + F H ++H +
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Query: 194 K 194
K
Sbjct: 89 K 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
+ CD+ F+ S+L RH H+GQ+P++C C + F HLT H R H+GEKPF C C
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 203 KRFSHSGSYSQH 214
++F+ S +H
Sbjct: 70 RKFARSDERKRH 81
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 165 QRPYKC-VE-CPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
+RPY C VE C + F +LT H R+H+G+KPFQC C++ FS S + H+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 54
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+G+ F C C + F++ L H H+G++P+ C C + F H ++H +K
Sbjct: 30 TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
+ CD+ F++ + L RH H+GQ+P++C C + F HLT H R H+GEKPF C C
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 203 KRFSHSGSYSQH 214
++F+ S +H
Sbjct: 70 RKFARSDERKRH 81
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 165 QRPYKC-VE-CPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMN 216
+RPY C VE C + F LT H R+H+G+KPFQC C++ FS S + H+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
++G+ F C C + F++ L H H+G++P+ C C + F H ++H +
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Query: 194 K 194
K
Sbjct: 89 K 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
+ CD+ F++ + L RH H+GQ+P++C C + F HLT H R H+GEKPF C C
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 203 KRFSHSGSYSQH 214
++F+ S +H
Sbjct: 70 RKFARSDERKRH 81
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 165 QRPYKC-VE-CPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMN 216
+RPY C VE C + F LT H R+H+G+KPFQC C++ FS S + H+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
++G+ F C C + F++ L H H+G++P+ C C + F H ++H +
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Query: 194 K 194
K
Sbjct: 89 K 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
+ CD+ F++ L RH H+GQ+P++C C + F HLT H R H+GEKPF C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 203 KRFSHSGSYSQH 214
++F+ S +H
Sbjct: 70 RKFARSDERKRH 81
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 165 QRPYKC-VE-CPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMN 216
+RPY C VE C + F LT H R+H+G+KPFQC C++ FS S + H+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
++G+ F C C + F++ L H H+G++P+ C C + F H ++H +
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 88
Query: 194 K 194
K
Sbjct: 89 K 89
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
+ CD+ F++ L RH H+GQ+P++C C + F HLT H R H+GEKPF C C
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 203 KRFSHSGSYSQH 214
++F+ S +H
Sbjct: 69 RKFARSDERKRH 80
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 165 QRPYKC-VE-CPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMN 216
+RPY C VE C + F LT H R+H+G+KPFQC C++ FS S + H+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 54
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
++G+ F C C + F++ L H H+G++P+ C C + F H ++H
Sbjct: 28 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 84 RPTASYPELSDMGSLEGDESLDRMDEDSSERKLKSRLMMS----SNGTMSCADDNSGEGQ 139
RP A E D DE + + ++ + R+ M S+ + ++GE
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQ 165
F CD C + FA+ RH H Q
Sbjct: 62 FACDICGRKFARSDERKRHTKIHLRQ 87
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
+ CD+ F++ L RH H+GQ+P++C C + F HLT H R H+GEKPF C C
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 203 KRFSHSGSYSQHM 215
++F+ S +H
Sbjct: 70 RKFARSDERKRHT 82
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 165 QRPYKC-VE-CPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMN 216
+RPY C VE C + F LT H R+H+G+KPFQC C++ FS S + H+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
++G+ F C C + F++ L H H+G++P+ C C + F H ++H
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 139 QFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+F+C C + F K +L H+ H+ +RPY C C KAF+ + HL +H+ +HS EKPF+C
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 199 CKCLKRFSHSGSYSQH 214
+C K F S + + H
Sbjct: 77 QECGKGFCQSRTLAVH 92
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
++ E + CD C K F + L H+Y HS ++P+KC EC K F L HK LH
Sbjct: 40 HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRF 205
++ + C C + F ++L H+R H+ E+P+ C C K F
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF 55
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 134 NSGEGQFLCD--QCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHS 191
++GE + CD C++ F++ L RH+ H+G +P++C C + F HL H R H+
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Query: 192 GEKPFQC--CKCLKRFSHSGSYSQHMN 216
GEKPF C C K+F+ S +H N
Sbjct: 91 GEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 140 FLC--DQCDKVFAKHSSLARHKYEHSGQRPYKC--VECPKAFKHKHHLTEHKRLHSGEKP 195
F+C C+K + K S L H +H+G++PY+C +C + F L H+R H+G KP
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 196 FQCCKCLKRFSHSGSYSQHM 215
FQC C ++FS S H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHT 86
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 163 SGQRPYKCV--ECPKAFKHKHHLTEHKRLHSGEKPFQC--CKCLKRFSHSGSYSQHMNHR 218
S +RP+ C C K + HL H R H+GEKP+QC C +RFS S +H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-R 60
Query: 219 YSYCKPY 225
++ KP+
Sbjct: 61 HTGVKPF 67
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 139 QFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++ CD+C K F+ S L++H+ H+G++PYKC EC KAF + HL H R+H+G P
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 159 KYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRF 205
+++ +R YKC EC K+F H L++H+R H+GEKP++C +C K F
Sbjct: 10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
++GE + CD+C K F + S L H H+G P
Sbjct: 41 HTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 145 CDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
C KV+ K S L H H+G++PYKC C F LT H R H+G KPFQC C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 203 KRFSHSGSYSQHM 215
+ FS S + HM
Sbjct: 83 RSFSRSDHLALHM 95
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 134 NSGEGQFLC--DQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
++GE + C + CD FA+ L RH +H+G +P++C C ++F HL H + H
Sbjct: 40 HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
+ CD+ F++ ++L H H+GQ+P++C C + F + L H R H+GEKPF C C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 203 KRFSHSGSYSQH 214
++F+ + ++H
Sbjct: 70 RKFATLHTRTRH 81
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 165 QRPYKC-VE-CPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
+RPY C VE C + F K +L H R+H+G+KPFQC C++ FS S + H+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHI 54
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+G+ F C C + F++ +SL H H+G++P+ C C + F H T H ++H +K
Sbjct: 30 TGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHS 191
E + C +C K F++ S L +H+ H+G++PYKC+EC KAF L H+R+H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
++PY CVEC KAF L +H+R+H+GEKP++C +C K FS + H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
+SG C+ C K+F L RHK HSG++PY C C FK K ++ H R H G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 194 --KPFQCCKCLKRFSHSGSYSQHMNHRYS 220
KP+ C C K FS + H+ +S
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCC 199
F C C K F + S+L+ H HS RPY C C K F K + +H +H+GEKP +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 200 KCLKRFSHSGSYSQH 214
C K FS S + H
Sbjct: 62 VCGKAFSQSSNLITH 76
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSG 192
+ C C K F + S + +H + H+G++P+KC C KAF +L H R H+G
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 121 MMSSNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCV--ECPKAFK 178
M N M G +C +C K F + S L RH+ H+G++P++C C K F
Sbjct: 16 MFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS 75
Query: 179 HKHHLTEHKRLHSGEKPFQCC--KCLKRFSHSGSYSQHM 215
+L H R+H+G++P+ C C K+F+ S + H+
Sbjct: 76 LDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 145 CDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCC--KCL 202
C K+F +S++ +H + H G R + C EC KAF L H+ +H+GEKPFQC C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 203 KRFSHSGSYSQHM 215
KRFS + H+
Sbjct: 72 KRFSLDFNLRTHV 84
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
+ CD+ F++ ++L H H+GQ+P++C C + F L +H R H+GEKPF C C
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Query: 203 KRFSHSGSYSQH 214
++F+ + +H
Sbjct: 70 RKFATLHTRDRH 81
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 165 QRPYKC-VE-CPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
+RPY C VE C + F K +L H R+H+G+KPFQC C++ FS +QH+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHI 54
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+G+ F C C + F++H+ L +H H+G++P+ C C + F H H ++H +K
Sbjct: 30 TGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+ CD+C F +LA HK H+G++PY+C C F +L H R+HSGEKP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
+PYKC C +F++K +L HK +H+GEKP++C C +F+ + H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+GE + C+ C F + ++L H HSG++P
Sbjct: 41 TGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 145 CDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
C K + K S L H H+G++PY C C F LT H R H+G +PFQC KC
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 203 KRFSHSGSYSQHM 215
+ FS S + HM
Sbjct: 74 RAFSRSDHLALHM 86
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 134 NSGEGQFLCDQ--CDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
++GE + CD C FA+ L RH +H+G RP++C +C +AF HL H + H
Sbjct: 31 HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 145 CDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
C K + K S L H H+G++PY C C F LT H R H+G +PFQC KC
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 203 KRFSHSGSYSQHM 215
+ FS S + HM
Sbjct: 73 RAFSRSDHLALHM 85
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 134 NSGEGQFLCDQ--CDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
++GE + CD C FA+ L RH +H+G RP++C +C +AF HL H + H
Sbjct: 30 HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 138 GQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQ 197
G C+ C K F++ L H H+G +PYKC C A L +H R+HS E+PF+
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 198 CCKCLKRFSHSGSYSQHM 215
C C +S + H+
Sbjct: 67 CQICPYASRNSSQLTVHL 84
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
+G + C CD A SSL +H HS +RP+KC CP A ++ LT H R H+G+
Sbjct: 32 TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 142 CDQCDKVFAKHSSLARHKYEHSGQRPYKCV--ECPKAFKHKHHLTEHKRLHSGEKPFQC- 198
C + K F L H H+G++P+ C C K F +L HKR H+GEKPF+C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 199 -CKCLKRFSHSGSYSQHM 215
C +RF++S +HM
Sbjct: 125 FEGCDRRFANSSDRKKHM 142
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 145 CDKVFAKHSSLARH-KYEHSG---QRPYKCV--ECP---KAFKHKHHLTEHKRLHSGEKP 195
CD+ F+ L H EH G Q + C ECP K+FK K+ L H R+H+GEKP
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 196 FQC--CKCLKRFSHSGSYSQH 214
F C C K F+ S + H
Sbjct: 91 FPCPFPGCGKIFARSENLKIH 111
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 145 CDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHKRLHSGEKPFQCCK-- 200
C + K+ L H +H+G++P+ C E C K F HHLT H H+GEK F C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 201 CLKRFSHSGSYSQHMN 216
C RF+ + +H N
Sbjct: 71 CDLRFTTKANMKKHFN 86
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
G ++C C + + +SL RH HS ++ Y C C K F + T+H+ H+GE+
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 196 FQCCKCLKRFSHSGSYSQHM 215
+QC C K F + S H+
Sbjct: 79 YQCLACGKSFINYQFMSSHI 98
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEH-KRLHSG 192
+S E ++ C C+KVF +H+ H+G+R Y+C+ C K+F + ++ H K +HS
Sbjct: 45 HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQ 104
Query: 193 E 193
+
Sbjct: 105 D 105
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 160 YEHSGQRPYKC-VE-CPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
Y RPY C VE C + F LT H R+H+G+KPFQC C++ FS S + H+
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHS 191
+ CD+ F++ L RH H+GQ+P++C C + F HLT H R H+
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 145 CDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHKRLHSGEKPFQCCK-- 200
C + K+ L H +H+G++P+ C E C K F HHLT H H+GEK F C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 201 CLKRFSHSGSYSQHMN 216
C RF+ + +H N
Sbjct: 80 CDLRFTTKANMKKHFN 95
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHKRLHSG 192
+ C K F KH+ L H++ H+ Q PY+C C K F L H+++H+G
Sbjct: 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 135 SGEGQFLCDQ--CDKVFAKHSSLARH--KYEHSGQRPYKC--VECPKAFKHKHHLTEHKR 188
+GE F CD CD F +++ +H ++ + Y C C KAFK + L H+
Sbjct: 68 TGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF 127
Query: 189 LHSGEKPFQCC--KCLKRFS 206
H+ + P++C C KRFS
Sbjct: 128 SHTQQLPYECPHEGCDKRFS 147
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY+C EC KAF K +LT+H+R+H+GEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C +C K FA+ ++L +H+ H+G++P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+P++C C + F HLT H R H+GEKPF C C ++F+ S +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAF 177
F C C + F++ L H H+G++P+ C C + F
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 147 KVFAKHSSLARHKYEHSGQRPYKCV--ECPKAFKHKHHLTEHKRLHSGEKPFQC--CKCL 202
+ F L H H+G++P+KC C K++ +L H R H+GEKP+ C C
Sbjct: 47 RPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS 106
Query: 203 KRFSHSGSYSQHMNHRYSYCKPY 225
K FS++ ++H N +S KPY
Sbjct: 107 KAFSNASDRAKHQNRTHSNEKPY 129
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 134 NSGEGQFLC--DQCDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHK-R 188
++GE C + C K +++ +L H H+G++PY C C KAF + +H+ R
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 189 LHSGEKPFQC--CKCLKRFSHSGSYSQHM 215
HS EKP+ C C KR++ S +H+
Sbjct: 122 THSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
QRPY+C+EC KAFK K L H+R H+GEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+ C +C K F SSL H+ H+G++P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEH-KRLHSG 192
F+C+ C + FA+ L RH H+ ++PY C C +AF + L H +++HSG
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFS 206
+ C C +AF + HL H R H+ EKP+ C C + F+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC EC K F HLT H R+H+GEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C++C KVF ++S L H H+G++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC EC K F+H +L+ H+R+H+GEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C++C KVF +S L+RH+ H+G++P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY C EC KAF H L EH+R+H+GEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C++C K F S L H+ H+G++P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
SG +PY C EC KAF+ K +L H R H+GEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+ +SG + C +C K F S L H H+G++P
Sbjct: 2 SSGSSGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
E F C+ C K + S L+RH+ H G RP C EC K F+ + + H ++H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
+RP+ C C K ++ L+ H+R H G +P C +C K F ++H+
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL 52
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
SGQR Y+C EC K+F+ K LT H+R+H+G P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+ +SG+ + C +C K F + SL H+ H+G P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY+C EC KAF HL +H+R+H+GEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C +C K F++ + L +H+ H+G++P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++P+KC EC K++ + HLT+H+R+H+GEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
SG++PY C EC KAF K H H+R+H+GE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQ 165
+ +SGE ++C +C K F + S H+ H+G+
Sbjct: 2 SSGSSGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHK-RLHSG 192
N E F C C + F + L H H+G+ PYKC C + F K L H +LHSG
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRP---YKCVECPKAFKHKHHLTEHKRLHS 191
+GE F C +C K + + +L H+ + R + C C + F+ + L H H+
Sbjct: 31 TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHT 90
Query: 192 GEKPFQCCKCLKRFSHSGSYSQHM 215
GE P++C C ++F HM
Sbjct: 91 GEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKR---LH 190
+SG C C K F L H +H+G++P++C +C K + K +L EH+ ++
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 191 SGEKPFQCCKCLKRFSHSGSYSQHM 215
E+ F C C + F HM
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHM 86
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++P+KC EC KAF+ HL H R+H+GEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E F C +C K F ++ LA H H+G++P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+RP+KC EC K+F HL +H+R+H+GEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY C EC K+F K HL H+R+H+GEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E ++C++C K F + S L RH+ H+G++P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC EC KAF L H+R+H+GEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C++C K F++ S LARH+ H+G++P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 39 EGQFLCDQCDKVFAKHSSLARHKYEHS 65
E + C++C K F++ S LARH+ H+
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHT 36
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
SGQ+PY C EC KAF K L H+R+H+GE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQ 165
+ +SG+ ++C++C K F S L H+ H+G+
Sbjct: 2 SSGSSGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
++PYKC EC KAF+ + +LT H+ +H+GEK
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
SG++PY C EC KAF K L HK +H+G KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+ +SGE + C++C K F S L HK H+G +P
Sbjct: 2 SSGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 33 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSVLQ 68
+ +SGE + C++C K F S L HK H+ ++
Sbjct: 2 SSGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC+EC KAF T+H+RLH+G++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C +C K F +SS +H+ H+GQRP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY+C C KAF H LT+H+R+HSGEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + CD C K F+ H+SL +H+ HSG++P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 193 EKPFQCCKCLKRFSHSGSYSQHM 215
EKP++C C K FSH S +QH
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQ 32
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 39 EGQFLCDQCDKVFAKHSSLARHKYEHS 65
E + CD C K F+ H+SL +H+ HS
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHS 36
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
SG+ PY+C EC KAF K L H+R H+GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQ 165
SGE + C +C K F + L H+ H+G+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
SG++PY C EC K F K +L H+R+H+GEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQR 166
+ +SGE + C++C K F+ S L H+ H+G++
Sbjct: 2 SSGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC EC KAF HL EH+R+H+G +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C +C K F +H+ L H+ H+G RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC EC KAF+ +LT H+ +H+GEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C++C K F HS+L H+ H+G++P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
SG++PY+C EC K+F + L H+RLH+G P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+ +SGE + C +C K F++ SLA H+ H+G P
Sbjct: 2 SSGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 191 SGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKP+QC +C K FS GS + H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVH 29
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 33 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+ +SGE + C +C K F++ SLA H+ H+
Sbjct: 2 SSGSSGEKPYQCKECGKSFSQRGSLAVHERLHT 34
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC EC K F HL H+R+H+G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C++C KVF ++S LA H+ H+G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 39 EGQFLCDQCDKVFAKHSSLARHKYEHSVLQKCSSS 73
E + C++C KVF ++S LA H+ H+ ++ S
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY+C EC KAF + +L H+++H+GEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C +C K F S+L H+ H+G++P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC EC K F HL H+ +H+GEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C++C KVF ++S L RH+ H+G++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 39 EGQFLCDQCDKVFAKHSSLARHKYEHS 65
E + C++C KVF ++S L RH+ H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHT 36
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY C EC KAF K +L H R HSGEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C +C K F+ S L H HSG++P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC EC K F HL H+ +H+GEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C++C KVF ++S LARH+ H+G++P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 39 EGQFLCDQCDKVFAKHSSLARHKYEHS 65
E + C++C KVF ++S LARH+ H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHT 36
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC EC K F HL H+R+H+G KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C++C KVF ++S LARH+ H+G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 39 EGQFLCDQCDKVFAKHSSLARHKYEHS 65
E + C++C KVF ++S LARH+ H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHT 36
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY+C C KAF H+ L+ H+R+HSG+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C C K F+ SL+ H+ HSG++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
SG++P C EC K F+ L++H+R+HSGEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+ +SG+ +C++C K F + S L++H+ HSG++P
Sbjct: 2 SSGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 33 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+ +SG+ +C++C K F + S L++H+ HS
Sbjct: 2 SSGSSGKKPLVCNECGKTFRQSSCLSKHQRIHS 34
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC EC K F HL H+ +H+GEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+ C++C KVF ++S LARH+ H+G++P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 42 FLCDQCDKVFAKHSSLARHKYEHS 65
+ C++C KVF ++S LARH+ H+
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHT 36
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY+C C KAF K HL +H++ H+GEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C C K F + + LA+H+ H+G++P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+ PY+C EC KAF K+ L H+R H+GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C +C K F++ L H+ H+G++P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++P++C EC KAF K +L H+R H+GEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E F C +C K F S+L H+ H+G++P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+PY+C EC KAF L H+R+H+GEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+ C++C K F++ S LARH+ H+G++P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 42 FLCDQCDKVFAKHSSLARHKYEHS 65
+ C++C K F++ S LARH+ H+
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHT 36
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+RPY C C KAF + +L +H+++H+GEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E ++C C K F S+L +H+ H+G++P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+ P+KC EC K F H HL++H+ +H+GE P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRP 167
F C++C K F+ + L++H+ H+G+ P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 193 EKPFQCCKCLKRFSHSGSYSQHM 215
E PF+C +C K FSHS S+H
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQ 32
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
SG++PY+C +C KAF K L H+R H+GE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++P+KCVEC K F + L H +LH+GEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E F C +C K F++ S+L H H+G++P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 134 NSGEGQFLCD--QCDKVFAKHSSLARHK-YEHSGQRPYKCVE--CPKAFKHKHHLTEHKR 188
+SG CD C ++F+ L HK Y+H Q+ + C E C K+F K HL EH +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 189 LHSGEKPFQC 198
LHS + + C
Sbjct: 62 LHSDTRDYIC 71
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC EC K F+ HL H+ +H+GEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C +C KVF ++S LARH+ H+G++P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 39 EGQFLCDQCDKVFAKHSSLARHKYEHS 65
E + C +C KVF ++S LARH+ H+
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHT 36
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC EC KAF+ + L H+ HSGEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C++C K F SSLA H+ HSG++P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 39 EGQFLCDQCDKVFAKHSSLARHKYEHS 65
E + C++C K F SSLA H+ HS
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHS 36
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++P+ C++C KAF L +H+R+H+GEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E F C C K F+ H L +H+ H+G++P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
++PYKCVEC K +K + L H+R+H+GEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++P++C EC K+F L H+R+H+GEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E F C +C K F+ S LA H+ H+G++P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY C EC K F K L+ H+R H+GEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C++C K F++ S L+ H+ H+G++P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC C K+F++ LT H+R+H+GEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + CD C K F SSL H+ H+G++P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
SG++PY C EC KAF L+ H+R+H+GE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQ 165
+ +SGE ++C +C K F + S L+ H+ H+G+
Sbjct: 2 SSGSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 33 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+ +SGE ++C +C K F + S L+ H+ H+
Sbjct: 2 SSGSSGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC C KAF+ HL +H +HSGE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C C K F S L +H HSG+RP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+R Y+C EC KAF K L H+R+H+GEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C +C K FA+ S+L H+ H+G++P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY C EC K+F+ L +H+R+HSGEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C +C K F S L +H+ HSG++P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
Q+P++C C K+F+ K +L H+R+H+GEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+RP+KC EC K F + HL H RLHS EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++P++C EC K F HL H+R+H+GEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E F C++C K F ++S L H+ H+G++P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
++PY+C EC K F HL +HKR+H+GE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+R Y+C EC KAF K L+ H+R+H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C +C K F + S+L+ H+ H G++P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+PY C EC KAF LT H+ +H+GEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRP 167
++C++C K F+ +SSL H+ H+G++P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 42 FLCDQCDKVFAKHSSLARHKYEHS 65
++C++C K F+ +SSL H+ H+
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHT 36
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHKRLHSG 192
+ C K F KH+ L H++ H+ Q PY+C C K F L H+++H+G
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHKRLHSG 192
+ C K F KH+ L H++ H+ Q PY+C C K F L H+++H+G
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY+C +C KAF + LT H+ +H+G+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C+QC K F+ SSL H+ H+G++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.007, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+ P+ C EC K F HK +L H+++H+GE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.3 bits (72), Expect = 0.22, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E F+C +C KVF ++L H+ H+G+RP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+ ++P++C C K+F+ + L H+ +H+GEKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 129 SCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
S + E F CD CDK F + S+L H+ H+G++P
Sbjct: 2 SSGSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 31 SCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
S + E F CD CDK F + S+L H+ H+
Sbjct: 2 SSGSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHT 36
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEH-KRLHSGE---KPFQCCKCLKRFSHSGSYSQHMNH 217
H+G++PY C C K F+ K L H KR H F C KC K F+ + ++H ++
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 34 DDNSGEGQFLCDQCDKVFAKHSSLARH 60
D N F+C +C K F + +++ARH
Sbjct: 40 DPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 132 DDNSGEGQFLCDQCDKVFAKHSSLARH 158
D N F+C +C K F + +++ARH
Sbjct: 40 DPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++ YKC EC K F L++H+++H+GEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 25/31 (80%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E ++ C++C KVF+++S L++H+ H+G++P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 39 EGQFLCDQCDKVFAKHSSLARHKYEHS 65
E ++ C++C KVF+++S L++H+ H+
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHT 36
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+KC EC K F LT H+R+H+GEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRP 167
F C++C K F + SSL H+ H+G++P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++P+KC EC K F L H+R+H+GEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E F C++C K F ++S L H+ H+G++P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
++PY+C EC KAF L H+R HSGE
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQ 165
+ C +C K F ++S L H+ HSG+
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
++PY+C EC KAF K +L H+R H+GE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 139 QFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEH 186
+++C++C K S L +H H+ RPY C C +FK K +LT+H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
Y C EC K L +H R H+ +P+ C C F G+ ++HM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSG 192
SG++PY C +C KAF K L H+ +H+G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSG 164
+ +SGE ++C C K F S L H+ H+G
Sbjct: 2 SSGSSGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY+C +C KAF K L H R+H+G P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + CDQC K F++ SL H H+G P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY C C KAF L H+R+H+GEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E ++CD C K F + L RH+ H+G++P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGE 193
+PY C EC KAF+ K +L H R H+GE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++C EC + F K HL +H+R+H+GEKP
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++C EC KAF K L+ H+++H+GEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRP 167
F C +C K F + S+L+ H+ H+G++P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC +C K + K +L H+++H+GE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY+C +C K+F K L H+R+H+GE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 173 CPKAFKHKHHLTEHKRLHSGEKPFQCC--KCLKRFSHSGSYSQH 214
C K + HL H R H+GEKPF C C +RF+ S S+H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 145 CDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHKRLH 190
C K + K S L H H+G++P+ C C + F L+ H+R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 167 PYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
PYKC +C K+F K L H+R+H+ EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHSGEKP 195
YKC C K F HL H+R+H+GEKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+ CD C K F++ S L H+ H+G++P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++P++C EC K+F L H+R+H+GE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHS 191
SG++PY C EC + F + L +H+++H+
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY+C C K+F K L H+++H+GEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 188 RLHSGEKPFQCCKCLKRFSHSGSYSQHMNHRYS 220
R HSGEKP++C C RF+ SG+ H+ +++
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT 40
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++P+KC EC K F H+R HSGEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E F C++C K F +S H+ HSG++P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+PY C +C K F K L H+R H+G KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+ C QC K F+ S L H+ H+G +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.049, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY C EC KAF + +L +H+++H+ +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 27.3 bits (59), Expect = 6.3, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E ++C +C K F S+L +H+ H+ Q+P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
SG++P+ C C KAF K +L H++ H+ EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+ +SGE F C C+K F+ S L H+ H+ ++P
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHSGEKP 195
Y C EC K+F L +H+RLHSGEKP
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C +C K F++ L +H+ HSG++P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
++PYKC +C K + + +L H+R+H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC EC K F + L H +H+GEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+PY+C EC K+F + LT+H H+ EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
+ PY+C EC K F K L H++ HSG+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQ 165
E + C +C KVF++ L H+ HSGQ
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
SG++ ++C EC K F L H+R+H+GE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 30.4 bits (67), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+ +SGE C +C K F+ HS L H+ H+G+ P
Sbjct: 2 SSGSSGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 139 QFLCDQCDKVFAKHSSLARHKYEHSGQRPY 168
Q C+ C K+F L RHK HSG++PY
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 170 CVECPKAFKHKHHLTEHKRLHSGEKPF 196
C C K F+ +HL HK HSGEKP+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
SG++ ++C C KAF K L H+R+H+GE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 33.9 bits (76), Expect = 0.085, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKR-LHSGEKP 195
++PY+C+EC KAF L H R H+GEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 140 FLCDQCDKVFAKHSSLARH-KYEHSGQRP 167
+ C +C K F +++SL RH +Y H+G++P
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 33.5 bits (75), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 145 CDKVFAKHSSLARH-KYEHSG---QRPYKCV--ECP---KAFKHKHHLTEHKRLHSGEK 194
CD+ F+ L H EH G Q + C ECP K+FK K+ L H R+H+GEK
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+R ++C +C K F + +H+R+H+GEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 164 GQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
G +C C K F+ ++L H R H+GEKP++C
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKC 35
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%)
Query: 142 CDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
C C K F + L H H+G++PYKC C A K L H H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
++PYKC +C K+F K L H++ H+GE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
++PYKC +C KAF K L H++ H+GE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 167 PYKCVECPKAFKHKHHLTEHKRLHSGEK 194
P KC EC K F +L H R+HSGEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 32.3 bits (72), Expect = 0.23, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSG 192
++PY+C EC KAF K L H+R H+G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2EOU|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
370- 400) Of Human Zinc Finger Protein 473
Length = 44
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 169 KCVECPKAFKHKHHLTEHKRLHSGE 193
+C EC K F+H L EH+ LH+GE
Sbjct: 14 ECQECGKIFRHSSLLIEHQALHAGE 38
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+P +CV C KAF L H R H+GEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
++PY C C KAF HL +H R+H+ E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSG 192
RPY C C K F KH + H R+H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 166 RPYKCVECPKAFKHKHHLTEH-KRLHSGEKPFQC 198
+PY C C K F HL H K++H+ E+P +C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.8 bits (68), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
S + + C C K FK KH L H R+H+ EK
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+P++C C + F HL H R H+GEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+RPY C EC K F HL EH + H EK
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREK 39
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHS 191
Y C EC KAF HLT H+++H+
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PY C C F+H L H R+H+G P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 30.4 bits (67), Expect = 0.85, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+PY C+ C + F L H R+H+GEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
S +PYKC +C A K +L H R H+GEK
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
++P KC EC KAF K L H+R H +K
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++P+KC C K+F + L H +H+ EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E F CD C K F S L RH H+ ++P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++PYKC C F HL H +H+G P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHS 191
+ P+KC +C + F +++L +H+R H+
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 39 EGQFLCDQCDKVFAKHSSLARHKYEHS 65
E F C +CD+VF + + L +H+ H+
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHS 163
E F C +CD+VF + + L +H+ H+
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECP---KAFKHKHHLTEHKRL 189
GE + C C +V+ S+ RH Y S +R K CP K F K ++T H ++
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRH-YVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSG 192
SG++PY C C FK K ++ H R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 13 MVLVKLKSRLMMSSNGTMSCADDNSGEGQFLCDQCDKV----FAKHSSLARHKYEHSVL- 67
+ L+KL ++++++SN T C E D + LAR+ +
Sbjct: 250 IALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPI 309
Query: 68 ---QKCSSSYN---YPRHSICNRPTASYPELSDMGSLEGDESLDRMDEDS-SERKLKSRL 120
QKC+++Y YPR S+ + E S GD + DS +ER +
Sbjct: 310 VDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGI 369
Query: 121 MMSSNGTMSCAD 132
+ S G+M+C +
Sbjct: 370 V--SWGSMNCGE 379
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++ +KC EC F L H+ +H GEKP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
E + C +CD F++ SSL H+ H G++P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2
pdb|1Q3X|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-2
Length = 328
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 13 MVLVKLKSRLMMSSNGTMSCADDNSGEGQFLCDQCDKV----FAKHSSLARHKYEHSVL- 67
+ L+KL ++++++SN T C E D + LAR+ +
Sbjct: 175 IALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPI 234
Query: 68 ---QKCSSSYN---YPRHSICNRPTASYPELSDMGSLEGDESLDRMDEDS-SERKLKSRL 120
QKC+++Y YPR S+ + E S GD + DS +ER +
Sbjct: 235 VDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGI 294
Query: 121 MMSSNGTMSCAD 132
+ S G+M+C +
Sbjct: 295 V--SWGSMNCGE 304
>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
Length = 29
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHSGEK 194
+ C ECPK F HLT H LH +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 163 SGQRP--YKCVECPKAFKHKHHLTEHKRLHS 191
SGQ+ +KC +C K F +LT+H+R+H+
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 242
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 13 MVLVKLKSRLMMSSNGTMSCADDNSGEGQFLCDQCDKV----FAKHSSLARHKYEHSVL- 67
+ L+KL ++++++SN T C E D + LAR+ +
Sbjct: 89 IALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPI 148
Query: 68 ---QKCSSSYN---YPRHSICNRPTASYPELSDMGSLEGDESLDRMDEDS-SERKLKSRL 120
QKC+++Y YPR S+ + E S GD + DS +ER +
Sbjct: 149 VDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGI 208
Query: 121 MMSSNGTMSCAD 132
+ S G+M+C +
Sbjct: 209 V--SWGSMNCGE 218
>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2
pdb|4FXG|J Chain J, Complement C4 In Complex With Masp-2
Length = 242
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 13 MVLVKLKSRLMMSSNGTMSCADDNSGEGQFLCDQCDKV----FAKHSSLARHKYEHSVL- 67
+ L+KL ++++++SN T C E D + LAR+ +
Sbjct: 89 IALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPI 148
Query: 68 ---QKCSSSYN---YPRHSICNRPTASYPELSDMGSLEGDESLDRMDEDS-SERKLKSRL 120
QKC+++Y YPR S+ + E S GD + DS +ER +
Sbjct: 149 VDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDAGGALVFLDSETERWFVGGI 208
Query: 121 MMSSNGTMSCAD 132
+ S G+M+C +
Sbjct: 209 V--SWGSMNCGE 218
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLH 190
+G +P++C +C ++F HL H++ H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 166 RPYKCVE--CPKAFKHKHHLTEHKRLHSGEK 194
RP+ C C K F L HKR H+GEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQR 166
F+C+ C + FA+ +L RH H+ ++
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc
Finger Protein 32
Length = 42
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 39 EGQFLCDQCDKVFAKHSSLARHK 61
E +LC QC K F + SLA H+
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQ 31
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 137 EGQFLCDQCDKVFAKHSSLARHK 159
E +LC QC K F + SLA H+
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQ 31
>pdb|1M8T|A Chain A, Structure Of An Acidic Phospholipase A2 From The Venom Of
Ophiophagus Hannah At 2.1 Resolution From A Hemihedrally
Twinned Crystal Form
pdb|1M8T|B Chain B, Structure Of An Acidic Phospholipase A2 From The Venom Of
Ophiophagus Hannah At 2.1 Resolution From A Hemihedrally
Twinned Crystal Form
pdb|1M8T|C Chain C, Structure Of An Acidic Phospholipase A2 From The Venom Of
Ophiophagus Hannah At 2.1 Resolution From A Hemihedrally
Twinned Crystal Form
pdb|1M8T|D Chain D, Structure Of An Acidic Phospholipase A2 From The Venom Of
Ophiophagus Hannah At 2.1 Resolution From A Hemihedrally
Twinned Crystal Form
pdb|1M8T|E Chain E, Structure Of An Acidic Phospholipase A2 From The Venom Of
Ophiophagus Hannah At 2.1 Resolution From A Hemihedrally
Twinned Crystal Form
pdb|1M8T|F Chain F, Structure Of An Acidic Phospholipase A2 From The Venom Of
Ophiophagus Hannah At 2.1 Resolution From A Hemihedrally
Twinned Crystal Form
Length = 119
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 26 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEH 64
S GT++C DN F+CD CD+V A + A + E+
Sbjct: 73 SEGTLTCKADNDECAAFVCD-CDRVAAICFAGAPYNKEN 110
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 124 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEH 162
S GT++C DN F+CD CD+V A + A + E+
Sbjct: 73 SEGTLTCKADNDECAAFVCD-CDRVAAICFAGAPYNKEN 110
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLH 190
+G +P++C +C +F HL H++ H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,261,870
Number of Sequences: 62578
Number of extensions: 282455
Number of successful extensions: 1391
Number of sequences better than 100.0: 199
Number of HSP's better than 100.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 617
Number of HSP's gapped (non-prelim): 722
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)