RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16147
(227 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 33.5 bits (77), Expect = 0.005
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 182 HLTEHKRLHSGEKPFQCCKCLKRFSH 207
+L H R H+GEKP++C C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 32.0 bits (73), Expect = 0.014
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 154 SLARHKYEHSGQRPYKCVECPKAFKH 179
+L RH H+G++PYKC C K+F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 35.8 bits (82), Expect = 0.013
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC--CKCLKRFSHSGSYSQHMNHR 218
RP C C +F HLT H R H+GEKP QC C K FS S+H+
Sbjct: 31 PRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTH 86
Score = 32.7 bits (74), Expect = 0.14
Identities = 40/178 (22%), Positives = 67/178 (37%), Gaps = 6/178 (3%)
Query: 41 QFLCDQCDKVFAKHSSLARHKYEHSVLQKCSSSYNYPRHSICNRPTASYPELSDMGSLEG 100
QC+ F++ S L RH + + ++ P +S+C + + L L
Sbjct: 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCP-YSLCGKLFSRNDALKRHILLHT 347
Query: 101 DESLDRMDEDSSERKLKSRLMMSSNGTMSCADDNSGEGQFLCD--QCDKVFAKHSSLARH 158
S + +S K L ++ D + + C + F + S+L+ H
Sbjct: 348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLH 407
Query: 159 KYEHSGQRP--YKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
H RP K C K+F ++L HK++H+ P C LK F S H
Sbjct: 408 IITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCS-ILKSFRRDLDLSNH 464
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 28.2 bits (63), Expect = 0.35
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLH 190
Y+C EC K FK K L EH R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.5 bits (56), Expect = 2.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 42 FLCDQCDKVFAKHSSLARHKYEH 64
+ C +C KVF S+L H H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.5 bits (56), Expect = 2.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEH 162
+ C +C KVF S+L H H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 27.7 bits (62), Expect = 0.44
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 169 KCVECPKAFKHKHHLTEHKRLH 190
KC +C K+F K +L H R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.0 bits (55), Expect = 3.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 44 CDQCDKVFAKHSSLARHKYEH 64
C C K F++ S+L RH H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 25.0 bits (55), Expect = 3.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 142 CDQCDKVFAKHSSLARHKYEH 162
C C K F++ S+L RH H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 28.8 bits (64), Expect = 2.6
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 13/97 (13%)
Query: 139 QFLC--DQCDKVFAKHSSLARH-KYEHSGQRPYKCVECPKAFKHKHHL------TEHKRL 189
F C +C + L +H K +H +C+ K F ++ L +HK
Sbjct: 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNG 210
Query: 190 HSGEKPFQ----CCKCLKRFSHSGSYSQHMNHRYSYC 222
E+ F+ C C F +H R+ C
Sbjct: 211 GLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEAC 247
>gnl|CDD|226535 COG4049, COG4049, Uncharacterized protein containing archaeal-type
C2H2 Zn-finger [General function prediction only].
Length = 65
Score = 26.1 bits (57), Expect = 4.0
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 192 GEKPFQCCKCLKRFSHSGSYSQHMN--HRYSYCKPYR 226
GE+ +C +C F Y +H+N H + + +
Sbjct: 14 GEEFLRCPRCGMVFRRRKDYIRHVNKAHGWLFGRGKP 50
>gnl|CDD|153091 cd00125, PLA2c, PLA2c: Phospholipase A2, a family of secretory and
cytosolic enzymes; the latter are either Ca dependent or
Ca independent. PLA2 cleaves the sn-2 position of the
glycerol backbone of phospholipids (PC or
phosphatidylethanolamine), usually in a metal-dependent
reaction, to generate lysophospholipid (LysoPL) and a
free fatty acid (FA). The resulting products are either
dietary or used in synthetic pathways for leukotrienes
and prostaglandins. Often, arachidonic acid is released
as a free fatty acid and acts as second messenger in
signaling networks. Secreted PLA2s have also been found
to specifically bind to a variety of soluble and
membrane proteins in mammals, including receptors. As a
toxin, PLA2 is a potent presynaptic neurotoxin which
blocks nerve terminals by binding to the nerve membrane
and hydrolyzing stable membrane lipids. The products of
the hydrolysis (LysoPL and FA) cannot form bilayers
leading to a change in membrane conformation and
ultimately to a block in the release of
neurotransmitters. PLA2 may form dimers or oligomers.
Length = 115
Score = 26.4 bits (59), Expect = 6.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 124 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVEC 173
S+G ++C+D N + LC+ CD+ A AR Y + R Y C
Sbjct: 70 SDGQITCSDANDKCARALCE-CDRAAAL--CFARAPY-NPKYRNYDKKRC 115
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 24.5 bits (54), Expect = 7.3
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 42 FLCDQCDKVFAKHSSLARHKYEH 64
C C K F+ +L HK H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
Score = 24.5 bits (54), Expect = 7.3
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEH 162
C C K F+ +L HK H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.130 0.407
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,501,655
Number of extensions: 878319
Number of successful extensions: 693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 51
Length of query: 227
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 134
Effective length of database: 6,812,680
Effective search space: 912899120
Effective search space used: 912899120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)