RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16147
(227 letters)
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 99.0 bits (248), Expect = 3e-27
Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
G C+ C K F++ L H H+G +PYKC C A L +H R+HS E+
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDER 63
Query: 195 PFQCCKCLKRFSHSGSYSQHM 215
PF+C C +S + H+
Sbjct: 64 PFKCQICPYASRNSSQLTVHL 84
Score = 86.7 bits (216), Expect = 2e-22
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 142 CDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
C CD A SSL +H HS +RP+KC CP A ++ LT H R H+G+
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 76.3 bits (189), Expect = 2e-18
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
P+KC C K F K L H R H+G KP++C C + S S ++H+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56
Score = 42.4 bits (101), Expect = 7e-06
Identities = 10/36 (27%), Positives = 11/36 (30%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
S E F C C S L H H+G
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 29.7 bits (68), Expect = 0.24
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 44 CDQCDKVFAKHSSLARHKYEHS 65
C CD A SSL +H HS
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHS 60
Score = 29.3 bits (67), Expect = 0.27
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
G C+ C K F++ L H H+
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHT 32
Score = 28.5 bits (65), Expect = 0.51
Identities = 9/28 (32%), Positives = 9/28 (32%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
S E F C C S L H H
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLRSH 87
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 95.2 bits (238), Expect = 1e-25
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+ +F+C C + F K +L H+ H+ +RPY C C KAF+ + HL +H+ +HS EK
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72
Query: 195 PFQCCKCLKRFSHSGSYSQHM 215
PF+C +C K F S + + H
Sbjct: 73 PFKCQECGKGFCQSRTLAVHK 93
Score = 84.4 bits (210), Expect = 2e-21
Identities = 23/63 (36%), Positives = 29/63 (46%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
E + CD C K F + L H+Y HS ++P+KC EC K F L HK LH
Sbjct: 42 DERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSS 101
Query: 196 FQC 198
Sbjct: 102 PTA 104
Score = 81.3 bits (202), Expect = 2e-20
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 153 SSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYS 212
S + + ++ + C C + F ++L H+R H+ E+P+ C C K F
Sbjct: 3 SGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLR 62
Query: 213 QH 214
H
Sbjct: 63 DH 64
Score = 40.5 bits (96), Expect = 4e-05
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
S E F C +C K F + +LA HK H
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 29.3 bits (67), Expect = 0.35
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEHS 65
E + CD C K F + L H+Y HS
Sbjct: 42 DERPYTCDICHKAFRRQDHLRDHRYIHS 69
Score = 27.8 bits (63), Expect = 1.3
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHK 61
+ +F+C C + F K +L H+
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHE 37
Score = 27.4 bits (62), Expect = 1.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHK 61
S E F C +C K F + +LA HK
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHK 93
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 94.0 bits (235), Expect = 2e-25
Identities = 30/74 (40%), Positives = 39/74 (52%)
Query: 142 CDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKC 201
C C K F + S+L+ H HS RPY C C K F K + +H +H+GEKP +C C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Query: 202 LKRFSHSGSYSQHM 215
K FS S + H
Sbjct: 64 GKAFSQSSNLITHS 77
Score = 69.8 bits (172), Expect = 3e-16
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSG 192
S + C C K F + S + +H + H+G++P+KC C KAF +L H R H+G
Sbjct: 25 SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 65.5 bits (161), Expect = 2e-14
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
+ C C K+FK L+ H +HS +P+ C C KRF +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT 49
Score = 28.2 bits (64), Expect = 0.59
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
S + C C K F + S + +H + H
Sbjct: 25 SDTRPYPCQYCGKRFHQKSDMKKHTFIH 52
Score = 26.2 bits (59), Expect = 2.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 44 CDQCDKVFAKHSSLARHKYEHS 65
C C K F + S+L+ H HS
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHS 25
Score = 26.2 bits (59), Expect = 2.7
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHK 61
GE C C K F++ S+L H
Sbjct: 54 GEKPHKCQVCGKAFSQSSNLITHS 77
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 93.7 bits (234), Expect = 5e-25
Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
SG+ + C QC K F S RH H G RPY C C K FK KHHL H ++H+G K
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 195 PFQCCKCLKRFSHSGSYSQHM 215
P++C C KRF S+ +H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 84.0 bits (209), Expect = 2e-21
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
G + C C K F L H H+G +PY+C C K F + H+ + S K
Sbjct: 33 LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTK 90
Query: 195 PFQCCKCLKRFSHSGS 210
++ K + + +
Sbjct: 91 SYEAAKAEQNTTEASG 106
Score = 70.2 bits (173), Expect = 5e-16
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
SG + Y C +C K+F HK H +H G +P+ C C K+F HM
Sbjct: 5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 57
Score = 52.1 bits (126), Expect = 3e-09
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLT 184
+G + C+ C K F S H++ S + Y+ + + +
Sbjct: 61 TGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 34.7 bits (81), Expect = 0.005
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 188 RLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
SG+K + C+C K F+H +HM
Sbjct: 3 SGSSGDKLYP-CQCGKSFTHKSQRDRHM 29
Score = 27.4 bits (62), Expect = 1.6
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
G + C C K F L H H+
Sbjct: 33 LGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 92.9 bits (232), Expect = 7e-25
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGE- 193
SG C+ C K+F L RHK HSG++PY C C FK K ++ H R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 194 -KPFQCCKCLKRFSHSGSYSQHM 215
KP+ C C K FS + H+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHI 85
Score = 78.7 bits (195), Expect = 2e-19
Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMN-HRYS 220
SG C C K F+ +HL HK HSGEKP+ C C RF S H+ H S
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 221 YCKPY 225
KPY
Sbjct: 62 VGKPY 66
Score = 67.5 bits (166), Expect = 4e-15
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSG--QRPYKCVECPKAFKHKHHLTEH-KRLHS 191
SGE + C C F + ++ H H G +PY C C K F HL H K++HS
Sbjct: 31 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Query: 192 GEK 194
G
Sbjct: 91 GPS 93
Score = 30.2 bits (69), Expect = 0.15
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
SG C+ C K+F L RHK HS
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHS 31
Score = 29.4 bits (67), Expect = 0.25
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
SGE + C C F + ++ H H
Sbjct: 31 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 26.7 bits (60), Expect = 2.9
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 38 GEGQ--FLCDQCDKVFAKHSSLARH 60
G ++C C K F++ L H
Sbjct: 60 GSVGKPYICQSCGKGFSRPDHLNGH 84
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 91.0 bits (227), Expect = 3e-24
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 143 DQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
+ CD+ F++ SL RH H+GQ+P++C C + F HLT H R H+GEKPF C C
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 203 KRFSHSGSYSQHM 215
++F+ S +H
Sbjct: 70 RKFARSDERKRHT 82
Score = 68.3 bits (168), Expect = 2e-15
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
G+ F C C + F++ L H H+G++P+ C C + F H ++H +K
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 30.1 bits (69), Expect = 0.14
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 193 EKPFQCCK--CLKRFSHSGSYSQHM 215
E+P+ C C +RFS SGS ++H+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHI 26
Score = 29.0 bits (66), Expect = 0.39
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE F CD C + FA+ RH H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 26.3 bits (59), Expect = 3.6
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
G+ F C C + F++ L H H
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTH 57
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 94.0 bits (235), Expect = 3e-24
Identities = 33/79 (41%), Positives = 47/79 (59%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
GE + C +C K F+ L RH+ H+G++PYKC EC K+F + +L H+R H+GEKP
Sbjct: 46 GEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP 105
Query: 196 FQCCKCLKRFSHSGSYSQH 214
+ C +C K FS H
Sbjct: 106 YACPECGKSFSQLAHLRAH 124
Score = 93.7 bits (234), Expect = 5e-24
Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
GE + C +C K F++ LA H+ H+G++PYKC EC K+F K LT H+R H+GEKP
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 196 FQCCKCLKRFSHSGSYSQH 214
++C +C K FS + H
Sbjct: 78 YKCPECGKSFSQRANLRAH 96
Score = 93.3 bits (233), Expect = 6e-24
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
GE + C +C K F++ ++L H+ H+G++PY C EC K+F HL H+R H+GEKP
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 196 FQCCKCLKRFSHSGSYSQH 214
++C +C K FS + H
Sbjct: 134 YKCPECGKSFSREDNLHTH 152
Score = 92.9 bits (232), Expect = 8e-24
Identities = 32/79 (40%), Positives = 51/79 (64%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
GE + C +C K F++ + L H+ H+G++PYKC EC K+F + +L H+R H+GEKP
Sbjct: 102 GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP 161
Query: 196 FQCCKCLKRFSHSGSYSQH 214
++C +C K FS + + H
Sbjct: 162 YKCPECGKSFSRRDALNVH 180
Score = 82.5 bits (205), Expect = 7e-20
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 149 FAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHS 208
SS G++PY C EC K+F HL EH+R H+GEKP++C +C K FS
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 209 GSYSQH 214
++H
Sbjct: 63 KDLTRH 68
Score = 75.9 bits (188), Expect = 2e-17
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
GE + C +C K F++ +L H+ H+G++PYKC EC K+F + L H+R H+G+K
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 50.9 bits (123), Expect = 3e-08
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 176 AFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+ L GEKP+ C +C K FS S ++H
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH 40
Score = 27.4 bits (62), Expect = 2.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHK 61
GE + C +C K F+ L RH+
Sbjct: 46 GEKPYKCPECGKSFSDKKDLTRHQ 69
Score = 27.4 bits (62), Expect = 2.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHK 61
GE + C +C K F++ +L H+
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQ 153
Score = 27.4 bits (62), Expect = 3.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C +C K F++ +L H+ H
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 27.0 bits (61), Expect = 3.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHK 61
GE + C +C K F++ + L H+
Sbjct: 102 GEKPYACPECGKSFSQLAHLRAHQ 125
Score = 26.6 bits (60), Expect = 4.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHK 61
GE + C +C K F++ ++L H+
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQ 97
Score = 26.6 bits (60), Expect = 5.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHK 61
GE + C +C K F++ LA H+
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQ 41
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 89.9 bits (224), Expect = 2e-23
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYE---HSGQRPYKCVECPKAFKHKHHLTEHKRLHSG 192
GE F C +C K + + +L H+ + ++ + C C + F+ + L H H+G
Sbjct: 32 GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG 91
Query: 193 EKPFQCCKCLKRFSHSGSYSQHM 215
E P++C C ++F HM
Sbjct: 92 EMPYKCSSCSQQFMQKKDLQSHM 114
Score = 88.7 bits (221), Expect = 6e-23
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRL---HS 191
SG C C K F L H +H+G++P++C +C K + K +L EH+ +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 192 GEKPFQCCKCLKRFSHSGSYSQHM 215
E+ F C C + F HM
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHM 86
Score = 74.5 bits (184), Expect = 2e-17
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
SG +C C K F K++L H R H+GEKPF+C KC K + + +H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHE 55
Score = 69.8 bits (172), Expect = 1e-15
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHK-RLHSGEK 194
E F C C + F + L H H+G+ PYKC C + F K L H +LHSG
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 28.6 bits (65), Expect = 0.87
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARH 60
E F C C + F + L H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLH 85
Score = 27.9 bits (63), Expect = 1.5
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
SG C C K F L H +H
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKH 30
Score = 27.5 bits (62), Expect = 1.7
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHK 61
GE + C C + F + L H
Sbjct: 91 GEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 27.5 bits (62), Expect = 2.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARH 60
GE F C +C K + + +L H
Sbjct: 32 GEKPFECPKCGKCYFRKENLLEH 54
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 86.4 bits (215), Expect = 2e-22
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCC 199
F C C + F++ L H H+G++P+ C C + F H+ + P
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPILED 62
Query: 200 KCLKRFSHSGSYSQHMNHR 218
K + S + +
Sbjct: 63 KVEELLSKNYHLENEVARL 81
Score = 70.6 bits (174), Expect = 2e-16
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
+P++C C + F HLT H R H+GEKPF C C ++F+ S +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 61.0 bits (149), Expect = 1e-12
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHK---RLHSG 192
GE F CD C + FA+ RH+ P + + +HL + G
Sbjct: 28 GEKPFACDICGRKFARSDERKRHRDIQ-HILPILEDKVEELLSKNYHLENEVARLKKLVG 86
Query: 193 EK 194
E+
Sbjct: 87 ER 88
Score = 29.4 bits (67), Expect = 0.22
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHK 61
GE F CD C + FA+ RH+
Sbjct: 28 GEKPFACDICGRKFARSDERKRHR 51
Score = 28.2 bits (64), Expect = 0.71
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 42 FLCDQCDKVFAKHSSLARHK 61
L D+ +++ +K+ L
Sbjct: 59 ILEDKVEELLSKNYHLENEV 78
Score = 26.7 bits (60), Expect = 2.3
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 42 FLCDQCDKVFAKHSSLARHK 61
F C C + F++ L H
Sbjct: 4 FQCRICMRNFSRSDHLTTHI 23
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 87.6 bits (218), Expect = 2e-22
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 136 GEGQFLCD--QCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
GE + CD C++ F++ L RH+ H+G +P++C C + F HL H R H+GE
Sbjct: 33 GEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE 92
Query: 194 KPFQC--CKCLKRFSHSGSYSQHM 215
KPF C C K+F+ S +H
Sbjct: 93 KPFSCRWPSCQKKFARSDELVRHH 116
Score = 84.1 bits (209), Expect = 3e-21
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 135 SGEGQFLCDQ--CDKVFAKHSSLARHKYEHSGQRPYKC--VECPKAFKHKHHLTEHKRLH 190
S + F+C C+K + K S L H +H+G++PY+C +C + F L H+R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 191 SGEKPFQCCKCLKRFSHSGSYSQHM 215
+G KPFQC C ++FS S H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHT 86
Score = 57.9 bits (141), Expect = 3e-11
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC--VECPKAFKHKHHLTEHKRLH 190
G F C C + F++ L H H+G++P+ C C K F L H +H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 25.9 bits (58), Expect = 5.4
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
G F C C + F++ L H H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTH 89
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 86.4 bits (215), Expect = 4e-22
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC--VECPKAFKHKHHLTEHKRLHSGE 193
G +C +C K F + S L RH+ H+G++P++C C K F +L H R+H+G+
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90
Query: 194 KPFQCCK--CLKRFSHSGSYSQHM 215
+P+ C C K+F+ S + H+
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 83.7 bits (208), Expect = 6e-21
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 142 CDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK- 200
C K+F +S++ +H + H G R + C EC KAF L H+ +H+GEKPFQC
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE 68
Query: 201 -CLKRFSHSGSYSQHM 215
C KRFS + H+
Sbjct: 69 GCGKRFSLDFNLRTHV 84
Score = 66.8 bits (164), Expect = 1e-14
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 136 GEGQFLC--DQCDKVFAKHSSLARHKYEHSGQRPYKCV--ECPKAFKHKHHLTEHKRLHS 191
GE F C + C K F+ +L H H+G RPY C C K F +L H H+
Sbjct: 59 GEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Query: 192 GEKPFQ 197
K Q
Sbjct: 119 KAKNNQ 124
Score = 28.3 bits (64), Expect = 0.91
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 193 EKPFQCCK--CLKRFSHSGSYSQHM 215
+ C C K F + + +H+
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHL 27
Score = 26.7 bits (60), Expect = 3.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
G +C +C K F + S L RH+ H
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVH 57
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 84.1 bits (209), Expect = 1e-21
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC--VECPKAFKHKHHLTEHKRLHSG 192
+ C K + K S L H H+G++PY C C F LT H R H+G
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG 62
Query: 193 EKPFQCCKCLKRFSHSGSYSQHM 215
+PFQC KC + FS S + HM
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHM 85
Score = 61.8 bits (151), Expect = 4e-13
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 161 EHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK--CLKRFSHSGSYSQHM 215
+ + C K + HL H R H+GEKP+ C C +F+ S ++H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57
Score = 58.7 bits (143), Expect = 7e-12
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 135 SGEGQFLCD--QCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
+GE + CD C FA+ L RH +H+G RP++C +C +AF HL H + H
Sbjct: 31 TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 28.3 bits (64), Expect = 0.63
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
+G F C +CD+ F++ LA H H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 25.6 bits (57), Expect = 6.4
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+ C K + K S L H H+
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT 31
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 83.6 bits (208), Expect = 2e-21
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 150 AKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSG 209
S R +++ +R YKC EC K+F H L++H+R H+GEKP++C +C K F
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60
Query: 210 SYSQH 214
H
Sbjct: 61 HLIGH 65
Score = 79.0 bits (196), Expect = 1e-19
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
++ CD+C K F+ S L++H+ H+G++PYKC EC KAF + HL H R+H+G P
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Query: 196 F 196
Sbjct: 75 S 75
Score = 36.3 bits (85), Expect = 7e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYK 169
GE + CD+C K F + S L H H+G P
Sbjct: 43 GEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 28.2 bits (64), Expect = 0.59
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
++ CD+C K F+ S L++H+ H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTH 41
Score = 26.3 bits (59), Expect = 2.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + CD+C K F + S L H H
Sbjct: 43 GEKPYKCDECGKAFIQRSHLIGHHRVH 69
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 85.7 bits (213), Expect = 4e-21
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 135 SGEGQFLCD--QCDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHKRLH 190
+++C C + K+ L H +H+G++P+ C E C K F HHLT H H
Sbjct: 8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
Query: 191 SGEKPFQC--CKCLKRFSHSGSYSQHM 215
+GEK F C C RF+ + +H
Sbjct: 68 TGEKNFTCDSDGCDLRFTTKANMKKHF 94
Score = 78.8 bits (195), Expect = 2e-18
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Query: 142 CDQCDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHKRLHSG---EKPF 196
+ C K F KH+ L H++ H+ Q PY+C C K F L H+++H+G +K
Sbjct: 109 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 168
Query: 197 QCCKCLKRFSHSGSYSQHM 215
C K ++ Y +H+
Sbjct: 169 SCSFVGKTWTL---YLKHV 184
Score = 75.7 bits (187), Expect = 3e-17
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 136 GEGQFLCDQ--CDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHKRLHS 191
GE F C + C+K F L RH H+G++ + C C F K ++ +H
Sbjct: 39 GEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 98
Query: 192 GEK--PFQCCK--CLKRFSHSGSYSQHM 215
K + C C K F H
Sbjct: 99 NIKICVYVCHFENCGKAFKKHNQLKVHQ 126
Score = 67.6 bits (166), Expect = 3e-14
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 158 HKYEHSGQRPYKC--VECPKAFKHKHHLTEHKRLHSGEKPFQC--CKCLKRFSHSGSYSQ 213
K + Y C +C A+ L H H+GEKPF C C K F+ ++
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTR 62
Query: 214 HM 215
H
Sbjct: 63 HS 64
Score = 53.0 bits (128), Expect = 6e-09
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 136 GEGQFLCDQ--CDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKR 188
+ + C CDK F+ S L RH+ H+G K C K +H
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 185
Score = 27.9 bits (63), Expect = 2.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 44 CDQCDKVFAKHSSLARHKYEH 64
+ C K F KH+ L H++ H
Sbjct: 109 FENCGKAFKKHNQLKVHQFSH 129
Score = 26.0 bits (58), Expect = 8.7
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 37 SGEGQFLCD--QCDKVFAKHSSLARHKYEH 64
+++C C + K+ L H +H
Sbjct: 8 VVYKRYICSFADCGAAYNKNWKLQAHLCKH 37
Score = 26.0 bits (58), Expect = 8.8
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 38 GEGQFLCDQ--CDKVFAKHSSLARHKYEH 64
GE F C + C+K F L RH H
Sbjct: 39 GEKPFPCKEEGCEKGFTSLHHLTRHSLTH 67
Score = 26.0 bits (58), Expect = 9.8
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 38 GEGQFLCDQ--CDKVFAKHSSLARHKYEH 64
+ + C CDK F+ S L RH+ H
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 82.1 bits (204), Expect = 7e-21
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 153 SSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYS 212
H + +PYKC C +F++K +L HK +H+GEKP++C C +F+ +
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 213 QHM 215
H
Sbjct: 63 THT 65
Score = 79.8 bits (198), Expect = 4e-20
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+ + CD+C F +LA HK H+G++PY+C C F +L H R+HSGEKP
Sbjct: 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Query: 196 F 196
+
Sbjct: 74 Y 74
Score = 29.3 bits (67), Expect = 0.22
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
+ + CD+C F +LA HK H
Sbjct: 14 SDKPYKCDRCQASFRYKGNLASHKTVH 40
Score = 28.6 bits (65), Expect = 0.38
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C+ C F + ++L H H
Sbjct: 42 GEKPYRCNICGAQFNRPANLKTHTRIH 68
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 83.9 bits (208), Expect = 1e-20
Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 123 SSNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYK---------CVEC 173
+SC + + CD+ F+ L H P + C
Sbjct: 9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPRE 68
Query: 174 PKAFKHKHHLTEHKRLHSGEKPFQC--CKCLKRFSHSGSYSQHM 215
K+FK K+ L H R+H+GEKPF C C K F+ S + H
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 81.9 bits (203), Expect = 6e-20
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 142 CDQCDKVFAKHSSLARHKYEHSGQRPYKC--VECPKAFKHKHHLTEHKRLHSGEKPFQCC 199
C + K F L H H+G++P+ C C K F +L HKR H+GEKPF+C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE 124
Query: 200 K--CLKRFSHSGSYSQHM 215
C +RF++S +HM
Sbjct: 125 FEGCDRRFANSSDRKKHM 142
Score = 66.9 bits (164), Expect = 3e-14
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 135 SGEGQFLCD--QCDKVFAKHSSLARHKYEHSGQRPYKCV--ECPKAFKHKHHLTEHKRLH 190
+GE F C C K+FA+ +L HK H+G++P+KC C + F + +H +H
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Query: 191 SGEKPFQCC 199
+ +K
Sbjct: 146 TSDKSGPSS 154
Score = 65.8 bits (161), Expect = 6e-14
Identities = 13/80 (16%), Positives = 18/80 (22%), Gaps = 9/80 (11%)
Query: 145 CDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQ------- 197
K+ Q C + F H L H + P Q
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 198 --CCKCLKRFSHSGSYSQHM 215
C + K F H+
Sbjct: 63 EECPREGKSFKAKYKLVNHI 82
Score = 46.1 bits (110), Expect = 9e-07
Identities = 5/45 (11%), Positives = 11/45 (24%)
Query: 172 ECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMN 216
+ + K + + C + FS H+
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVT 46
Score = 30.3 bits (69), Expect = 0.28
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 25 SSNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSV 66
+SC + + CD+ F+ L H V
Sbjct: 9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHV 50
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 81.4 bits (202), Expect = 1e-20
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 135 SGEGQFLCD--QCDKVFAKHSSLARHK-YEHSGQRPYKCVE--CPKAFKHKHHLTEHKRL 189
SG CD C ++F+ L HK Y+H Q+ + C E C K+F K HL EH +L
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Query: 190 HSGEKPFQCCKCLKRF 205
HS + + C
Sbjct: 63 HSDTRDYICEFSGPSS 78
Score = 65.6 bits (161), Expect = 1e-14
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 162 HSGQRPYKC--VECPKAFKHKHHLTEHKRL-HSGEKPFQC--CKCLKRFSHSGSYSQHM 215
SG C C + F ++ +L HK+ H +K F C C K F+ +HM
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Score = 32.1 bits (74), Expect = 0.026
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 190 HSGEKPFQCCK--CLKRFSHSGSYSQHMNHRYSYCKPYR 226
SG C C + FS+ + H +++ + K +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS 40
Score = 27.1 bits (61), Expect = 1.2
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 37 SGEGQFLCD--QCDKVFAKHSSLARHK 61
SG CD C ++F+ L HK
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHK 29
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 38 GEGQFLCDQ--CDKVFAKHSSLARHKYEHS 65
+ F C + C K F L H HS
Sbjct: 35 HQKSFSCPEPACGKSFNFKKHLKEHMKLHS 64
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 81.1 bits (201), Expect = 2e-20
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 142 CDQCDKVFAKHSSLARHKYEHSGQRPYKC--VECPKAFKHKHHLTEHKRLHSGEKPFQCC 199
+ C K F KH+ L H++ H+ Q PY+C C K F L H+++H+G +
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Query: 200 KCLKRFSHSGSYSQHMNHR 218
C Y +H+
Sbjct: 66 SCSFVGKTWTLYLKHVAEC 84
Score = 54.2 bits (131), Expect = 3e-10
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 136 GEGQFLCDQ--CDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHK-HHLTEHKRLH 190
+ + C CDK F+ S L RH+ H+G K C K +L H
Sbjct: 28 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 28.7 bits (65), Expect = 0.47
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 44 CDQCDKVFAKHSSLARHKYEH 64
+ C K F KH+ L H++ H
Sbjct: 6 FENCGKAFKKHNQLKVHQFSH 26
Score = 26.8 bits (60), Expect = 2.2
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 38 GEGQFLCDQ--CDKVFAKHSSLARHKYEHS 65
+ + C CDK F+ S L RH+ H+
Sbjct: 28 QQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 80.6 bits (200), Expect = 3e-20
Identities = 15/74 (20%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSG----QRPYKCVECPKAFKHKHHLTEHKRLHS 191
GE + C CDK F + L H + + C +C K F ++ + H +
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCA 71
Query: 192 GEKPFQCCKCLKRF 205
G +
Sbjct: 72 GPDGVEGENSGPSS 85
Score = 72.9 bits (180), Expect = 2e-17
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 154 SLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGE----KPFQCCKCLKRFSHSG 209
S H+G++PY C C K F+ K L H + + F C KC K F+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 210 SYSQHM 215
+ ++H
Sbjct: 62 TMARHA 67
Score = 28.6 bits (65), Expect = 0.42
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C CDK F + L H +
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRY 38
Score = 28.3 bits (64), Expect = 0.68
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 42 FLCDQCDKVFAKHSSLARHKYEH 64
F+C +C K F + +++ARH
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNC 70
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 82.3 bits (204), Expect = 4e-20
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 135 SGEGQFLCDQCD-----KVFAKHSSLARHKYEHSGQRPYKCV--ECPKAFKHKHHLTEHK 187
+F+C + F L H H+G++P+KC C K++ +L H
Sbjct: 30 GERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHL 89
Query: 188 RLHSGEKPFQC--CKCLKRFSHSGSYSQHMNHRYSYCKPYR 226
R H+GEKP+ C C K FS++ ++H N +S KPY
Sbjct: 90 RSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYV 130
Score = 80.3 bits (199), Expect = 3e-19
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 140 FLCDQCDKVFAKHSSLARH---KYEHSGQRPYKCVEC-----PKAFKHKHHLTEHKRLHS 191
D C + F L H ++ H ++ + C + FK ++ L H R H+
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 192 GEKPFQC--CKCLKRFSHSGSYSQHM 215
GEKP +C C K +S + H+
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHL 89
Score = 74.6 bits (184), Expect = 4e-17
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 135 SGEGQFLCD--QCDKVFAKHSSLARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHK-RL 189
+GE C C K +++ +L H H+G++PY C C KAF + +H+ R
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 190 HSGEKPFQC--CKCLKRFSHSGSYSQHM 215
HS EKP+ C C KR++ S +H+
Sbjct: 123 HSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 55.3 bits (134), Expect = 5e-10
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 166 RPYKCVECPKAFKHKHHLTEH---KRLHSGEKPFQC-----CKCLKRFSHSGSYSQHM 215
+ C + F + L H + +H K F C + L+ F HM
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM 59
Score = 54.9 bits (133), Expect = 7e-10
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 136 GEGQFLCDQ--CDKVFAKHSSLARHKYE-HSGQRPYKC--VECPKAFKHKHHLTEHKRLH 190
GE ++C+ C K F+ S A+H+ HS ++PY C C K + L +H +
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Query: 191 SG 192
G
Sbjct: 154 HG 155
Score = 30.3 bits (69), Expect = 0.32
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 193 EKPFQCCKCLKRFSHSGSYSQHMN--HRYSYCKPYR 226
E + C + F H+N H + K +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFV 36
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 80.4 bits (199), Expect = 6e-20
Identities = 32/73 (43%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 145 CDKVFAKHSSLARHKYEHSGQRPYKCV--ECPKAFKHKHHLTEHKRLHSGEKPFQCCKCL 202
C KV+ K S L H H+G++PYKC C F LT H R H+G KPFQC C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 203 KRFSHSGSYSQHM 215
+ FS S + HM
Sbjct: 83 RSFSRSDHLALHM 95
Score = 57.6 bits (140), Expect = 2e-11
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 135 SGEGQFLC--DQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
+GE + C + CD FA+ L RH +H+G +P++C C ++F HL H + H
Sbjct: 41 TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 57.6 bits (140), Expect = 2e-11
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 149 FAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCC--KCLKRFS 206
+ H P C K + HL H R H+GEKP++C C RF+
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 207 HSGSYSQHM 215
S ++H
Sbjct: 59 RSDELTRHY 67
Score = 27.6 bits (62), Expect = 1.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
+G F C C++ F++ LA H H
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 79.1 bits (196), Expect = 1e-19
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 154 SLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGE--KPFQCCKCLKRFSHSGSY 211
S HSG++PY+C C F + H E F C C +
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 212 SQHMNHRYSYCKPY 225
H+ ++SY P
Sbjct: 62 GVHLRKQHSYSGPS 75
Score = 68.3 bits (168), Expect = 1e-15
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSG--QRPYKCVECPKAFKHKHHLTEH-KRLHS 191
SGE + C C F + ++ H + + C C K L H ++ HS
Sbjct: 11 SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Query: 192 GEKPF 196
P
Sbjct: 71 YSGPS 75
Score = 28.6 bits (65), Expect = 0.37
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
SGE + C C F + ++ H +
Sbjct: 11 SGEKPYECYICHARFTQSGTMKMHILQK 38
Score = 27.9 bits (63), Expect = 0.68
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 42 FLCDQCDKVFAKHSSLARH 60
F C CD V A+ S L H
Sbjct: 46 FHCPHCDTVIARKSDLGVH 64
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 78.7 bits (195), Expect = 1e-19
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 155 LARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+ HSG++PY CVEC KAF L +H+R+H+GEKP++C +C K FS + H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 77.9 bits (193), Expect = 2e-19
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
SGE + C +C K F++ S L +H+ H+G++PYKC+EC KAF L H+R+H+
Sbjct: 10 SGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Query: 195 PF 196
Sbjct: 70 SS 71
Score = 27.4 bits (62), Expect = 0.97
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEHS 65
GE + C +C K F+++S L H+ H+
Sbjct: 39 GEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 26.7 bits (60), Expect = 1.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
SGE + C +C K F++ S L +H+ H
Sbjct: 10 SGEKPYGCVECGKAFSRSSILVQHQRVH 37
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 77.5 bits (192), Expect = 3e-19
Identities = 15/65 (23%), Positives = 26/65 (40%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
S C +C + ++L H+ H RP+KC C K +L++H + G+
Sbjct: 5 SSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
Query: 195 PFQCC 199
Sbjct: 65 SGPSS 69
Score = 74.1 bits (183), Expect = 7e-18
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
S P KC EC + K L H+R+H ++PF+C C + S+HM
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 39.0 bits (92), Expect = 6e-05
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 188 RLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
S P +C +C S + H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHE 29
Score = 31.3 bits (72), Expect = 0.031
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
+ F C+ C + S+L++H +
Sbjct: 34 TDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 30.2 bits (69), Expect = 0.10
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
S C +C + ++L H+ H
Sbjct: 5 SSGHPEKCSECSYSCSSKAALRIHERIH 32
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 69.8 bits (172), Expect = 2e-16
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
R + C C +AF + HL H R H+ EKP+ C C + F+ +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 68.7 bits (169), Expect = 5e-16
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEH-KRLHSGEK 194
F+C+ C + FA+ L RH H+ ++PY C C +AF + L H +++HSG
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 30.5 bits (70), Expect = 0.059
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHK 61
E + C C++ F + L RH
Sbjct: 27 NEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 29.4 bits (67), Expect = 0.15
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 42 FLCDQCDKVFAKHSSLARHK 61
F+C+ C + FA+ L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHY 22
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 3e-16
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
SG++PYKC EC KAF HL EH+R+H+G +P
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 40.9 bits (97), Expect = 7e-06
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE + C +C K F +H+ L H+ H+G RP
Sbjct: 8 SGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKP++C +C K F ++H
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 27.5 bits (62), Expect = 0.49
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
SGE + C +C K F +H+ L H+ H
Sbjct: 8 SGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 6e-16
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G +PY C EC KAF LT H+ +H+GEKP
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 41.0 bits (97), Expect = 7e-06
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
G ++C++C K F+ +SSL H+ H+G++P
Sbjct: 9 GVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+G KP+ C +C K FS S + H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 27.9 bits (63), Expect = 0.38
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
G ++C++C K F+ +SSL H+ H
Sbjct: 9 GVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 68.7 bits (169), Expect = 6e-16
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKR--LHSGEKPFQCCKCLKRFSHSGSYSQHM 215
G+ Y+C C + + H + H K + C C K F+ + + H+
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 61.8 bits (151), Expect = 2e-13
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHK--YEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSG 192
GE + C C +V+ S+ RH + Y C C K F K ++T H ++
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 39.1 bits (92), Expect = 6e-05
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 187 KRLHSGEKPFQCCKCLKRFSHSGSYSQHM-NHRYSYCKPYR 226
+ GE ++C C + ++H ++ +H K Y
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYP 42
Score = 28.3 bits (64), Expect = 0.36
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHK 61
GE + C C +V+ S+ RH
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHY 30
Score = 27.9 bits (63), Expect = 0.62
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSG 164
+ C C K F + ++ H
Sbjct: 36 RNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 26.7 bits (60), Expect = 1.2
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
+ C C K F + ++ H
Sbjct: 36 RNVKVYPCPFCFKEFTRKDNMTAHVKII 63
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.5 bits (166), Expect = 1e-15
Identities = 20/43 (46%), Positives = 24/43 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
SG++PYKC EC K F HLT H R+H+GEKP
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 3e-06
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVE 172
SGE + C++C KVF ++S L H H+G++P
Sbjct: 8 SGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKP++C +C K F+ + + H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 28.2 bits (64), Expect = 0.30
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
SGE + C++C KVF ++S L H H
Sbjct: 8 SGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 67.2 bits (165), Expect = 2e-15
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEH-KRLHSGEKPFQCCKCLKRFS 206
S +PY C C K F HL H K++H+ E+P +C + S
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 48.0 bits (115), Expect = 3e-08
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARH-KYEHSGQRPYKCVECPKAF 177
S ++C C K F++ L H K H+ +RP+KC
Sbjct: 8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 36.4 bits (85), Expect = 4e-04
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQHMNHRYSYCKPY 225
S KP+ C C K FS + H+ ++ +P+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPH 42
Score = 25.2 bits (56), Expect = 4.0
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARH 60
S ++C C K F++ L H
Sbjct: 8 SVGKPYICQSCGKGFSRPDHLNGH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.3 bits (163), Expect = 3e-15
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G++PYKC EC K F+ HL H+ +H+GEKP
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 41.3 bits (98), Expect = 6e-06
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C +C KVF ++S LARH+ H+G++P
Sbjct: 9 GEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 4e-05
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K F + ++H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 28.2 bits (64), Expect = 0.24
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C +C KVF ++S LARH+ H
Sbjct: 9 GEKPYKCHECGKVFRRNSHLARHQLIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 3e-15
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
SG++P+KC EC KAF+ HL H R+H+GEKP
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE F C +C K F ++ LA H H+G++P
Sbjct: 8 SGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKPF+C +C K F + + H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 27.5 bits (62), Expect = 0.58
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
SGE F C +C K F ++ LA H H
Sbjct: 8 SGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 4e-15
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G++PYKC EC KAF+ + L H+ HSGEKP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
Score = 41.4 bits (98), Expect = 6e-06
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C++C K F SSLA H+ HSG++P
Sbjct: 9 GEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K F S + H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 28.3 bits (64), Expect = 0.30
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C++C K F SSLA H+ H
Sbjct: 9 GEKPYKCNECGKAFRARSSLAIHQATH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 5e-15
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY+C C KAF K HL +H++ H+GEKP
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C C K F+ +QH
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 39.8 bits (94), Expect = 2e-05
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVE 172
GE + C C K F + + LA+H+ H+G++P
Sbjct: 9 GEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
Score = 26.3 bits (59), Expect = 1.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C C K F + + LA+H+ H
Sbjct: 9 GEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 66.0 bits (162), Expect = 5e-15
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++ YKC EC K F L++H+++H+GEKP
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/35 (37%), Positives = 26/35 (74%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE ++ C++C KVF+++S L++H+ H+G++P
Sbjct: 9 GEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEK ++C +C K FS + SQH
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 27.5 bits (62), Expect = 0.56
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE ++ C++C KVF+++S L++H+ H
Sbjct: 9 GEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 5e-15
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PYKC C KAF+ HL +H +HSGE+P
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 41.0 bits (97), Expect = 8e-06
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C C K F S L +H HSG+RP
Sbjct: 9 GEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 185 EHKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C C K F S QH
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 27.1 bits (61), Expect = 0.67
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEHS 65
GE + C C K F S L +H HS
Sbjct: 9 GEKPYKCQVCGKAFRVSSHLVQHHSVHS 36
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 5e-15
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G++PYKC EC KAF+ +LT H+ +H+GEKP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
Score = 41.7 bits (99), Expect = 4e-06
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C++C K F HS+L H+ H+G++P
Sbjct: 9 GEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 4e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K F + + H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 28.6 bits (65), Expect = 0.22
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C++C K F HS+L H+ H
Sbjct: 9 GEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 5e-15
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY+C EC KAF K +LT+H+R+H+GEKP
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C +C K FA+ ++L +H+ H+G++P
Sbjct: 9 GEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K F+ + +QH
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 26.7 bits (60), Expect = 0.96
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C +C K FA+ ++L +H+ H
Sbjct: 9 GEKPYRCGECGKAFAQKANLTQHQRIH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 5e-15
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G+RP+KC EC K+F HL +H+R+H+GEKP
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 39.4 bits (93), Expect = 3e-05
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE C++C K F + + L +H+ H+G++P
Sbjct: 9 GERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 5e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GE+P +C +C K F S QH
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 25.9 bits (58), Expect = 1.8
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARH 60
GE C++C K F + + L +H
Sbjct: 9 GERPHKCNECGKSFIQSAHLIQH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 5e-15
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G++P+KC EC K++ + HLT+H+R+H+GEKP
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 39.4 bits (93), Expect = 2e-05
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE F C +C K + + L +H+ H+G++P
Sbjct: 9 GEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 5e-05
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKPF+C +C K ++ +QH
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 26.3 bits (59), Expect = 1.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE F C +C K + + L +H+ H
Sbjct: 9 GEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 6e-15
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G++PY+C C KAF H LT+H+R+HSGEKP
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 42.1 bits (100), Expect = 3e-06
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + CD C K F+ H+SL +H+ HSG++P
Sbjct: 9 GEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 42.1 bits (100), Expect = 3e-06
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C C K FSH S +QH
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 28.6 bits (65), Expect = 0.17
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEHS 65
GE + CD C K F+ H+SL +H+ HS
Sbjct: 9 GEKPYECDVCRKAFSHHASLTQHQRVHS 36
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 6e-15
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY C EC KAF K +L H R HSGEKP
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP+ C +C K FS H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 39.8 bits (94), Expect = 2e-05
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
+GE + C +C K F+ S L H HSG++P
Sbjct: 8 AGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+GE + C +C K F+ S L H HS
Sbjct: 8 AGEKPYGCSECGKAFSSKSYLIIHMRTHS 36
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 7e-15
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G++PY+C +C KAF + LT H+ +H+G+KP
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 41.4 bits (98), Expect = 6e-06
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C+QC K F+ SSL H+ H+G++P
Sbjct: 9 GEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K FS S + H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 28.3 bits (64), Expect = 0.30
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C+QC K F+ SSL H+ H
Sbjct: 9 GEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 65.3 bits (160), Expect = 7e-15
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+GQRPY+C+EC KAFK K L H+R H+GEKP
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 7e-06
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVE 172
G+ + C +C K F SSL H+ H+G++P
Sbjct: 9 GQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45
Score = 40.6 bits (96), Expect = 1e-05
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+G++P++C +C K F S H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 26.7 bits (60), Expect = 0.93
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
G+ + C +C K F SSL H+ H
Sbjct: 9 GQRPYECIECGKAFKTKSSLICHRRSH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 65.3 bits (160), Expect = 8e-15
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY C EC K+F+ L +H+R+HSGEKP
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 41.4 bits (98), Expect = 5e-06
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVE 172
+GE + C +C K F S L +H+ HSG++P
Sbjct: 8 TGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 40.2 bits (95), Expect = 1e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP+ C +C K F + +H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 27.1 bits (61), Expect = 0.70
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+GE + C +C K F S L +H+ HS
Sbjct: 8 TGEKPYNCKECGKSFRWASCLLKHQRVHS 36
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 8e-15
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G++PYKC +C K + K +L H+++H+GE+P
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
Score = 41.0 bits (97), Expect = 9e-06
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C++C K + +L H+ H+G+RP
Sbjct: 9 GEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C KC K ++ + H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 26.7 bits (60), Expect = 0.85
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C++C K + +L H+ H
Sbjct: 9 GEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 8e-15
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
SG+RPY C EC K F HL EH + H EK
Sbjct: 1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 42.5 bits (101), Expect = 2e-06
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE + C++C K F +HS L H H ++
Sbjct: 8 SGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
SGE+P+ C +C K F +H+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHL 32
Score = 29.4 bits (67), Expect = 0.095
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
SGE + C++C K F +HS L H H
Sbjct: 8 SGERPYGCNECGKNFGRHSHLIEHLKRHF 36
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 1e-14
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY+C C KAF H+ L+ H+R+HSG+KP
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 41.3 bits (98), Expect = 5e-06
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C C K FSH S S H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 40.2 bits (95), Expect = 2e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C C K F+ SL+ H+ HSG++P
Sbjct: 9 GEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 26.7 bits (60), Expect = 0.90
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEHS 65
GE + C C K F+ SL+ H+ HS
Sbjct: 9 GEKPYECSVCGKAFSHRQSLSVHQRIHS 36
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 1e-14
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 157 RHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY C EC KAF H L EH+R+H+GEKP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 6e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP+ C +C K F H +H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 40.6 bits (96), Expect = 1e-05
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C++C K F S L H+ H+G++P
Sbjct: 9 GEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.40
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C++C K F S L H+ H
Sbjct: 9 GEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 1e-14
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PYKC C K+F++ LT H+R+H+GEKP
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 2e-06
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVE 172
GE + CD C K F SSL H+ H+G++P
Sbjct: 9 GEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
Score = 40.6 bits (96), Expect = 1e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C C K F + S + H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 28.2 bits (64), Expect = 0.26
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + CD C K F SSL H+ H
Sbjct: 9 GEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 1e-14
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
SG+RP+KC EC K F + HL H RLHS EK
Sbjct: 1 GSSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE F C++C K F + S LA H HS ++
Sbjct: 8 SGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 36.0 bits (84), Expect = 5e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGE+PF+C +C K F + H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 27.5 bits (62), Expect = 0.50
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
SGE F C++C K F + S LA H HS
Sbjct: 8 SGERPFKCNECGKGFGRRSHLAGHLRLHS 36
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 1e-14
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G+ PY+C EC KAF K+ L H+R H+GEKP
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GE P++C +C K FS H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 38.6 bits (91), Expect = 6e-05
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C +C K F++ L H+ H+G++P
Sbjct: 9 GENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 25.2 bits (56), Expect = 3.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C +C K F++ L H+ H
Sbjct: 9 GENPYECHECGKAFSRKYQLISHQRTH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 1e-14
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY C C KAF HL +H R+H+ E
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 185 EHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
+GEKP+ C C K F S +QH+
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHL 32
Score = 39.8 bits (94), Expect = 2e-05
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C+ C K F + L +H H+ +
Sbjct: 9 GEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 27.1 bits (61), Expect = 0.64
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C+ C K F + L +H H
Sbjct: 9 GEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 64.4 bits (158), Expect = 2e-14
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G +PY C EC KAF+ K +L H R H+GE
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 38.6 bits (91), Expect = 4e-05
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
G ++C++C K F S L H H+G+
Sbjct: 9 GMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+G KP+ C +C K F H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 26.3 bits (59), Expect = 1.3
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
G ++C++C K F S L H H
Sbjct: 9 GMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 2e-14
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
SG++P+KC EC K F L H+R+H+GEKP
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 40.6 bits (96), Expect = 1e-05
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKPF+C +C KRF+ + H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 40.6 bits (96), Expect = 1e-05
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE F C++C K F ++S L H+ H+G++P
Sbjct: 8 SGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.47
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
SGE F C++C K F ++S L H+ H
Sbjct: 8 SGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 64.1 bits (157), Expect = 2e-14
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G +PY C +C K F K L H+R H+G KP
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 39.1 bits (92), Expect = 3e-05
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+G KP+ C +C K FS H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 38.7 bits (91), Expect = 5e-05
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
G + C QC K F+ S L H+ H+G +P
Sbjct: 9 GVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 26.0 bits (58), Expect = 2.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
G + C QC K F+ S L H+ H
Sbjct: 9 GVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-14
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 157 RHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PYKC EC K F+H +L+ H+R+H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 5e-06
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVE 172
GE + C++C KVF +S L+RH+ H+G++P
Sbjct: 9 GEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K F H+ S+H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 27.9 bits (63), Expect = 0.35
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C++C KVF +S L+RH+ H
Sbjct: 9 GEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-14
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++P+ C++C KAF L +H+R+H+GEKP
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 2e-06
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE F C C K F+ H L +H+ H+G++P
Sbjct: 9 GEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 5e-06
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKPF C C K FS +QH
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 29.0 bits (66), Expect = 0.12
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE F C C K F+ H L +H+ H
Sbjct: 9 GEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 64.1 bits (157), Expect = 2e-14
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY+C EC KAF HL +H+R+H+GEKP
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K FS + QH
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 39.0 bits (92), Expect = 4e-05
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C +C K F++ + L +H+ H+G++P
Sbjct: 9 GEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C +C K F++ + L +H+ H
Sbjct: 9 GEKPYECKECGKAFSQTTHLIQHQRVH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-14
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
SG++P++C EC K F HL H+R+H+GEKP
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 185 EHKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKPFQC +C KRF+ + H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 39.8 bits (94), Expect = 2e-05
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE F C++C K F ++S L H+ H+G++P
Sbjct: 8 SGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.63
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
SGE F C++C K F ++S L H+ H
Sbjct: 8 SGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-14
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++P+KC C K+F + L H +H+ EKP
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 41.7 bits (99), Expect = 4e-06
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE F CD C K F S L RH H+ ++P
Sbjct: 9 GEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKPF+C C K F ++H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 28.6 bits (65), Expect = 0.18
Identities = 13/27 (48%), Positives = 13/27 (48%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE F CD C K F S L RH H
Sbjct: 9 GEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-14
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
S ++PYKC +C K + + +L H+R+H GEK
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 39.8 bits (94), Expect = 2e-05
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
S E + C+ C K + + +L H+ H G++
Sbjct: 8 SVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
S EKP++C C K ++ + H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 25.9 bits (58), Expect = 1.6
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
S E + C+ C K + + +L H+ H
Sbjct: 8 SVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 2e-14
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY C EC K+F K HL H+R+H+GEKP
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 5e-06
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVE 172
GE ++C++C K F + S L RH+ H+G++P
Sbjct: 9 GEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
Score = 37.9 bits (89), Expect = 9e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP+ C +C K F ++H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 27.9 bits (63), Expect = 0.36
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE ++C++C K F + S L RH+ H
Sbjct: 9 GEKPYICNECGKSFIQKSHLNRHRRIH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.0 bits (157), Expect = 3e-14
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++P++C EC KAF K +L H+R H+GEKP
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKPF+C +C K F+ + H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 39.0 bits (92), Expect = 4e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE F C +C K F S+L H+ H+G++P
Sbjct: 9 GEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 2.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE F C +C K F S+L H+ H
Sbjct: 9 GEKPFECSECQKAFNTKSNLIVHQRTH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 3e-14
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
G++ YKC C K F HL H+R+H+GEKP
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + CD C K F++ S L H+ H+G++P
Sbjct: 9 GEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
GEK ++C C K FS S H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 27.5 bits (62), Expect = 0.46
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + CD C K F++ S L H+ H
Sbjct: 9 GEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 64.6 bits (158), Expect = 3e-14
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 152 HSSLARHKYEHSGQRPYKCV--ECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSG 209
H Y RPY C C + F LT H R+H+G+KPFQC C++ FS S
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 210 SYSQHM 215
+ H+
Sbjct: 64 HLTTHI 69
Score = 55.4 bits (134), Expect = 8e-11
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 136 GEGQFLCD--QCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHS 191
+ C CD+ F++ L RH H+GQ+P++C C + F HLT H R H+
Sbjct: 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 26.5 bits (59), Expect = 2.0
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+G+ F C C + F++ L H H+
Sbjct: 45 TGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 26.5 bits (59), Expect = 2.0
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 163
+G+ F C C + F++ L H H+
Sbjct: 45 TGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.7 bits (156), Expect = 3e-14
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 157 RHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PYKC EC K F HL H+ +H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 6e-06
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C++C KVF ++S L RH+ H+G++P
Sbjct: 9 GEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 4e-05
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K F+ + +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 28.2 bits (64), Expect = 0.30
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C++C KVF ++S L RH+ H
Sbjct: 9 GEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.8 bits (156), Expect = 3e-14
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G++PYKC+EC KAF T+H+RLH+G++P
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 41.0 bits (97), Expect = 7e-06
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K F + S +QH
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 40.3 bits (95), Expect = 1e-05
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C +C K F +SS +H+ H+GQRP
Sbjct: 9 GEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 26.8 bits (60), Expect = 0.87
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C +C K F +SS +H+ H
Sbjct: 9 GEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 64.3 bits (157), Expect = 3e-14
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLHS---GEKPFQCCKCLKRFSHSGSYSQHM 215
SG +C C + K L H+R H+ F C C KRF S + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 64.3 bits (157), Expect = 4e-14
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHS---GQRPYKCVECPKAFKHKHHLTEHKRLH 190
+SG C+ C + +SL H+ +H+ + C C K F+ + H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 191 SGEKPFQCCKCLKRFS 206
+ S
Sbjct: 62 HPALLLAPQESSGPSS 77
Score = 37.8 bits (88), Expect = 2e-04
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 133 DNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPK 175
+ +F C+ C K F K S+A H+ + E
Sbjct: 32 ETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74
Score = 32.4 bits (74), Expect = 0.019
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 35 DNSGEGQFLCDQCDKVFAKHSSLARHKYEH 64
+ +F C+ C K F K S+A H+ +
Sbjct: 32 ETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 27.4 bits (61), Expect = 1.1
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 36 NSGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+SG C+ C + +SL H+ +H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHA 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 63.3 bits (155), Expect = 4e-14
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
G+R ++C +C K F + +H+R+H+GEKP
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
GE+ +C C K F + ++ QH
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 37.5 bits (88), Expect = 1e-04
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE C C K F + S+ +H+ H+G++P
Sbjct: 8 HGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE C C K F + S+ +H+ H
Sbjct: 8 HGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 63.3 bits (155), Expect = 4e-14
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PYKC EC K F + L H +H+GEKP
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C++C K F L H H+G++P
Sbjct: 9 GEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 6e-05
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K F H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 27.1 bits (61), Expect = 0.74
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C++C K F L H H
Sbjct: 9 GEKPYKCEECGKGFICRRDLYTHHMVH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 4e-14
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G+R Y+C EC KAF K L H+R+H+GEKP
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 185 EHKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GE+ ++C +C K F+ + H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 37.5 bits (88), Expect = 1e-04
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C +C K FA+ S+L H+ H+G++P
Sbjct: 9 GERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 4.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARH 60
GE + C +C K FA+ S+L H
Sbjct: 9 GERHYECSECGKAFARKSTLIMH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 4e-14
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PYKC EC K F HL H+ +H+GEKP
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 4e-06
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
G+ + C++C KVF ++S LARH+ H+G++P
Sbjct: 9 GKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 5e-05
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+G+KP++C +C K F+ + ++H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 28.6 bits (65), Expect = 0.17
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
G+ + C++C KVF ++S LARH+ H
Sbjct: 9 GKKPYKCNECGKVFTQNSHLARHRGIH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 63.3 bits (155), Expect = 4e-14
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+GQ+P++C C K+F+ K +L H+R+H+GEK
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
G+ F C C K F +L H+ H+G++
Sbjct: 9 GQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+G+KPF+C C K F G+ H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 27.1 bits (61), Expect = 0.77
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
G+ F C C K F +L H+ H
Sbjct: 9 GQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 4e-14
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 157 RHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PYKC EC K F HL H+R+H+G KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 40.6 bits (96), Expect = 9e-06
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C++C KVF ++S LA H+ H+G +P
Sbjct: 9 GEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 38.7 bits (91), Expect = 6e-05
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K F+ + + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 27.5 bits (62), Expect = 0.50
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C++C KVF ++S LA H+ H
Sbjct: 9 GEKPYKCNECGKVFTQNSHLANHQRIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 5e-14
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 157 RHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G++P++C EC K+F L H+R+H+GE P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 39.4 bits (93), Expect = 2e-05
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP +C +C K FS + H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 39.1 bits (92), Expect = 4e-05
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE C +C K F+ +S L H+ H+G+ P
Sbjct: 9 GEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 26.0 bits (58), Expect = 1.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE C +C K F+ +S L H+ H
Sbjct: 9 GEKPHECRECGKSFSFNSQLIVHQRIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 5e-14
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PYKC EC K F HL H+ +H+GEKP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 40.9 bits (97), Expect = 7e-06
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C++C KVF ++S LARH+ H+G++P
Sbjct: 9 GEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 4e-05
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K F+ + ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 28.2 bits (64), Expect = 0.27
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C++C KVF ++S LARH+ H
Sbjct: 9 GEKPYKCNECGKVFTQNSHLARHRGIH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 5e-14
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G + ++C EC KAF K L+ H+++H+GEKP
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 40.2 bits (95), Expect = 1e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+G K F+C +C K F+ + S H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 39.4 bits (93), Expect = 3e-05
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
G F C +C K F + S+L+ H+ H+G++P
Sbjct: 9 GGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARH 60
G F C +C K F + S+L+ H
Sbjct: 9 GGKHFECTECGKAFTRKSTLSMH 31
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 5e-14
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++ +KC EC K F LT H+R+H+GEKP
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 6e-06
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
+G+ F C++C K F + SSL H+ H+G++P
Sbjct: 8 AGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 1e-05
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+G+K F+C +C K F+ S S + H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 28.2 bits (64), Expect = 0.29
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
+G+ F C++C K F + SSL H+ H
Sbjct: 8 AGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 63.3 bits (155), Expect = 5e-14
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++P+KCVEC K F + L H +LH+GEKP
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKPF+C +C K FS + + H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 39.4 bits (93), Expect = 3e-05
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE F C +C K F++ S+L H H+G++P
Sbjct: 9 GEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE F C +C K F++ S+L H H
Sbjct: 9 GEKPFKCVECGKGFSRRSALNVHHKLH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 5e-14
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 158 HKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
SG++PY C EC K F K L+ H+R H+GEKP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 6e-06
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVE 172
SGE + C++C K F++ S L+ H+ H+G++P
Sbjct: 8 SGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45
Score = 40.6 bits (96), Expect = 1e-05
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKP+ C +C K FS S H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 27.5 bits (62), Expect = 0.46
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
SGE + C++C K F++ S L+ H+ H
Sbjct: 8 SGEKPYGCNECGKTFSQKSILSAHQRTH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 63.3 bits (155), Expect = 5e-14
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 157 RHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PYKC EC KAF L H+R+H+GEKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 40.6 bits (96), Expect = 9e-06
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C++C K F++ S LARH+ H+G++P
Sbjct: 9 GEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K FS + ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 27.5 bits (62), Expect = 0.47
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C++C K F++ S LARH+ H
Sbjct: 9 GEKPYKCNECGKAFSQTSKLARHQRIH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 5e-14
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
G++PY+C EC K+F + LT+H H+ EKP
Sbjct: 1 GSSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 39.4 bits (93), Expect = 2e-05
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C +C K F+ L +H H+ ++P
Sbjct: 8 EGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 39.1 bits (92), Expect = 3e-05
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
GEKP+QC +C K FS S +QH
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 26.0 bits (58), Expect = 1.5
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C +C K F+ L +H H
Sbjct: 8 EGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 6e-14
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
SG++PY+C EC K F HL +HKR+H+GE+
Sbjct: 1 GSSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVE 172
SG+ + C +C K F + L +HK H+G+R
Sbjct: 8 SGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 36.4 bits (85), Expect = 3e-04
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SG+KP++C +C K F G +QH
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQH 31
Score = 26.3 bits (59), Expect = 1.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
SG+ + C +C K F + L +HK H+
Sbjct: 8 SGKKPYECKECRKTFIQIGHLNQHKRVHT 36
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 7e-14
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PYKC +C KAF K L H++ H+GE+
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C C K F + S L H+ H+G+R
Sbjct: 9 GEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 38.3 bits (90), Expect = 6e-05
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C C K F+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 26.3 bits (59), Expect = 1.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C C K F + S L H+ H
Sbjct: 9 GEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 62.5 bits (153), Expect = 7e-14
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
SG++PY+C EC KAF K L H+R H+G
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 38.3 bits (90), Expect = 6e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKP++C +C K F H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 37.5 bits (88), Expect = 1e-04
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE + C++C K F S L H+ H+G
Sbjct: 8 SGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 26.7 bits (60), Expect = 0.86
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
SGE + C++C K F S L H+ H
Sbjct: 8 SGEKPYECNECGKAFIWKSLLIVHERTH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.9 bits (154), Expect = 7e-14
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 158 HKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
SG++PYKCVEC K +K + L H+R+H+GEK
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
Score = 39.1 bits (92), Expect = 4e-05
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKP++C +C K + H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 38.3 bits (90), Expect = 8e-05
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE + C +C K + + L H+ H+G++
Sbjct: 8 SGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 25.2 bits (56), Expect = 3.5
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
SGE + C +C K + + L H+ H
Sbjct: 8 SGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 7e-14
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PYKC EC K F HL H+R+H+G KP
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 42.1 bits (100), Expect = 3e-06
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C++C KVF ++S LARH+ H+G +P
Sbjct: 9 GEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 38.3 bits (90), Expect = 8e-05
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K F+ + ++H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 29.0 bits (66), Expect = 0.13
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C++C KVF ++S LARH+ H
Sbjct: 9 GEKPYKCNECGKVFTQNSHLARHRRVH 35
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 8e-14
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++ Y C EC K+F L +H+RLHSGEKP
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEK + C +C K FS + +H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 39.4 bits (93), Expect = 3e-05
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C +C K F++ L +H+ HSG++P
Sbjct: 9 GEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 26.3 bits (59), Expect = 1.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEHS 65
GE + C +C K F++ L +H+ HS
Sbjct: 9 GEKLYNCKECGKSFSRAPCLLKHERLHS 36
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 9e-14
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 157 RHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
SG++PY C C KAF L H+R+H+GEKP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 41.7 bits (99), Expect = 5e-06
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE ++CD C K F + L RH+ H+G++P
Sbjct: 8 SGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 41.0 bits (97), Expect = 8e-06
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKP+ C C K F S +H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 28.2 bits (64), Expect = 0.26
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
SGE ++CD C K F + L RH+ H
Sbjct: 8 SGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.5 bits (153), Expect = 9e-14
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 158 HKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G+R Y+C EC KAF K L+ H+R+H GEKP
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 40.2 bits (95), Expect = 1e-05
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 185 EHKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GE+ ++C +C K F + S H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 39.4 bits (93), Expect = 3e-05
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C +C K F + S+L+ H+ H G++P
Sbjct: 9 GERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 25.9 bits (58), Expect = 1.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C +C K F + S+L+ H+ H
Sbjct: 9 GERHYECSECGKAFIQKSTLSMHQRIH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 1e-13
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY+C C K+F K L H+++H+GEKP
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C C K F+ H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 38.7 bits (91), Expect = 5e-05
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C C K F K S L H+ H+G++P
Sbjct: 9 GEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 2.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C C K F K S L H+ H
Sbjct: 9 GEKPYECSICGKSFTKKSQLHVHQQIH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 62.1 bits (152), Expect = 1e-13
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 157 RHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++P++C EC K+F L H+R+H+GEKP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 41.3 bits (98), Expect = 5e-06
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKPF+C +C K FS S + H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 39.4 bits (93), Expect = 3e-05
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE F C +C K F+ S LA H+ H+G++P
Sbjct: 9 GEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.93
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARH 60
GE F C +C K F+ S LA H
Sbjct: 9 GEKPFECAECGKSFSISSQLATH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.2 bits (152), Expect = 1e-13
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCK 200
+G++PYKC +C K+F K L H++ H+GE+
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 39.8 bits (94), Expect = 2e-05
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C C K F S L H+ H+G+R
Sbjct: 9 GEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 38.3 bits (90), Expect = 7e-05
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C C K F+ H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 26.3 bits (59), Expect = 1.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C C K F S L H+ H
Sbjct: 9 GEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 62.1 bits (152), Expect = 1e-13
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY+C EC KAF K +L H+R H+GE
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C++C K F S+L H+ H+G+
Sbjct: 9 GEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 38.6 bits (91), Expect = 5e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K F+ + H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 27.1 bits (61), Expect = 0.58
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C++C K F S+L H+ H
Sbjct: 9 GEKPYECNECQKAFNTKSNLMVHQRTH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 62.1 bits (152), Expect = 1e-13
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY+C EC KAF + +L H+++H+GEKP
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C +C K F S+L H+ H+G++P
Sbjct: 9 GEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C +C K F+ + H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 26.3 bits (59), Expect = 1.5
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARH 60
GE + C +C K F S+L H
Sbjct: 9 GEKPYRCAECGKAFTDRSNLFTH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.7 bits (151), Expect = 1e-13
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 158 HKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G+ P+ C EC K F HK +L H+++H+GE+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 40.9 bits (97), Expect = 8e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GE PF C +C K F+H + H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 40.2 bits (95), Expect = 1e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE F+C +C KVF ++L H+ H+G+RP
Sbjct: 9 GENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 26.7 bits (60), Expect = 0.87
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARH 60
GE F+C +C KVF ++L H
Sbjct: 9 GENPFICSECGKVFTHKTNLIIH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.8 bits (151), Expect = 2e-13
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 158 HKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G +PY+C EC KAF L H+R+H+GEKP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 41.4 bits (98), Expect = 6e-06
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
G + C++C K F++ S LARH+ H+G++P
Sbjct: 9 GGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 39.1 bits (92), Expect = 4e-05
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+G KP+QC +C K FS + ++H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 27.9 bits (63), Expect = 0.34
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
G + C++C K F++ S LARH+ H
Sbjct: 9 GGKPYQCNECGKAFSQTSKLARHQRVH 35
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 61.4 bits (150), Expect = 2e-13
Identities = 17/37 (45%), Positives = 21/37 (56%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
SG+ PY+C EC KAF K L H+R H+GE
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 38.3 bits (90), Expect = 7e-05
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE + C +C K F + L H+ H+G+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 34.8 bits (81), Expect = 0.001
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 187 KRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGE P++C +C K F+ H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISH 29
Score = 24.8 bits (55), Expect = 4.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
SGE + C +C K F + L H+ H+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHA 34
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 61.4 bits (150), Expect = 2e-13
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
SG++P+ C C KAF K +L H++ H+ EKP
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 40.2 bits (95), Expect = 1e-05
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE F C C+K F+ S L H+ H+ ++P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 34.0 bits (79), Expect = 0.002
Identities = 12/28 (42%), Positives = 12/28 (42%)
Query: 187 KRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKPF C C K FS H
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 26.7 bits (60), Expect = 0.84
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
SGE F C C+K F+ S L H+ H+
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 61.4 bits (150), Expect = 2e-13
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 158 HKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G PYKC +C K+F K L H+R+H+ EKP
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
+G + C QC+K F+ L H+ H+ ++P
Sbjct: 8 AGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 36.7 bits (86), Expect = 2e-04
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+G P++C +C K FS H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 26.7 bits (60), Expect = 0.86
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARH 60
+G + C QC+K F+ L H
Sbjct: 8 AGVNPYKCSQCEKSFSGKLRLLVH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 2e-13
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 157 RHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G+RPY C C KAF + +L +H+++H+GEKP
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE ++C C K F S+L +H+ H+G++P
Sbjct: 9 GERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GE+P+ C C K F+ + +H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 26.3 bits (59), Expect = 1.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARH 60
GE ++C C K F S+L +H
Sbjct: 9 GERPYICTVCGKAFTDRSNLIKH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.4 bits (150), Expect = 2e-13
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY+C +C K+F K L H+R+H+GE P
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 38.7 bits (91), Expect = 4e-05
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP++C C K F H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 38.3 bits (90), Expect = 7e-05
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C C K F K S L H+ H+G+ P
Sbjct: 9 GEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 24.8 bits (55), Expect = 4.0
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C C K F K S L H+ H
Sbjct: 9 GEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 61.4 bits (150), Expect = 2e-13
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 158 HKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G+ PY+C EC K F K L H++ HSG+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 36.3 bits (85), Expect = 4e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GE P++CC+C K FS H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 35.2 bits (82), Expect = 9e-04
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C +C KVF++ L H+ HSGQ
Sbjct: 9 GENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 24.0 bits (53), Expect = 8.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEHS 65
GE + C +C KVF++ L H+ HS
Sbjct: 9 GENPYECCECGKVFSRKDQLVSHQKTHS 36
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 61.4 bits (150), Expect = 3e-13
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
S + ++C EC + F K HL +H+R+H+GEKP
Sbjct: 1 GSSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
S K QC +C + F+ +QH
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 36.4 bits (85), Expect = 3e-04
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
S C +C + F S L +H+ H+G++P
Sbjct: 8 SSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.0
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
S C +C + F S L +H+ H
Sbjct: 8 SSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 61.0 bits (149), Expect = 3e-13
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
SG++P+KC EC K F H+R HSGEKP
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKPF+C +C K F + H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 39.1 bits (92), Expect = 3e-05
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE F C++C K F +S H+ HSG++P
Sbjct: 8 SGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.97
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
SGE F C++C K F +S H+ HS
Sbjct: 8 SGEKPFKCEECGKGFYTNSQCYSHQRSHS 36
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 61.0 bits (149), Expect = 3e-13
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++PY C EC KAF + +L +H+++H+ +KP
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 40.2 bits (95), Expect = 1e-05
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE ++C +C K F S+L +H+ H+ Q+P
Sbjct: 9 GEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP+ C +C K F+ + +H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 27.1 bits (61), Expect = 0.77
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARH 60
GE ++C +C K F S+L +H
Sbjct: 9 GEKPYICAECGKAFTIRSNLIKH 31
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 60.7 bits (148), Expect = 4e-13
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 157 RHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++P KC EC KAF K L H+R H +K
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 38.3 bits (90), Expect = 7e-05
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE C +C K F S L H+ H +
Sbjct: 9 GEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 36.8 bits (86), Expect = 3e-04
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GEKP +C +C K F H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 25.6 bits (57), Expect = 2.6
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE C +C K F S L H+ H
Sbjct: 9 GEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 60.6 bits (148), Expect = 5e-13
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 158 HKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
G++ +KC EC F L H+ +H GEKP
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 41.4 bits (98), Expect = 5e-06
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
GE + C +CD F++ SSL H+ H G++P
Sbjct: 8 MGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 37.5 bits (88), Expect = 1e-04
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
GEK ++C +C FS + S H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 28.3 bits (64), Expect = 0.28
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C +CD F++ SSL H+ H
Sbjct: 8 MGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 59.5 bits (145), Expect = 1e-12
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPF 196
SGQR Y+C EC K+F+ K LT H+R+H+G P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 36.4 bits (85), Expect = 3e-04
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPY 168
+SG+ + C +C K F + SL H+ H+G P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 33.7 bits (78), Expect = 0.002
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 187 KRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SG++ ++C +C K F GS + H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 27.5 bits (62), Expect = 0.40
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 36 NSGEGQFLCDQCDKVFAKHSSLARH 60
+SG+ + C +C K F + SL H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLH 29
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 59.1 bits (144), Expect = 2e-12
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 158 HKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPF 196
G++PYKC C F HL H +H+G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 39.8 bits (94), Expect = 2e-05
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
GEKP++C C RF H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHV 31
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPY 168
GE + C+ C F + + L H H+G P
Sbjct: 7 GGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 26.3 bits (59), Expect = 1.1
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C+ C F + + L H H
Sbjct: 7 GGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 59.1 bits (144), Expect = 2e-12
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRL-HSGEKPFQC 198
+G++PY+C+EC KAF L H R H+GEKP
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 41.4 bits (98), Expect = 6e-06
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQHMNHRYSYCKPY 225
+G+KP++C +C K F + S +H + ++ KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPS 42
Score = 37.2 bits (87), Expect = 2e-04
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARH-KYEHSGQRPYKC 170
G+ + C +C K F +++SL RH +Y H+G++P
Sbjct: 9 GKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 26.4 bits (59), Expect = 1.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARH 60
G+ + C +C K F +++SL RH
Sbjct: 9 GKKPYECIECGKAFIQNTSLIRH 31
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 59.3 bits (144), Expect = 3e-12
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 153 SSLARHKYEHSGQRPYKCV--ECPKAFKHKHHLTEHKRLHSGEKPFQCC--KCLKRFSHS 208
S + + + S R + C C K + HL H R H+GEKPF C C +RF+ S
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 209 GSYSQHM 215
S+H
Sbjct: 63 DELSRHR 69
Score = 45.5 bits (108), Expect = 3e-07
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 124 SNGTMSCADDNSGEGQFLCDQ--CDKVFAKHSSLARHKYEHSGQRPYKCV--ECPKAFKH 179
S+G+ D+S +C C K + K S L H H+G++P+ C C + F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 180 KHHLTEHKRLH 190
L+ H+R H
Sbjct: 62 SDELSRHRRTH 72
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 59.6 bits (144), Expect = 3e-12
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 9/85 (10%)
Query: 123 SSNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARH-KYEHSGQRPYK--------CVEC 173
+SC + + CD+ F+ L H EH G C
Sbjct: 9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPRE 68
Query: 174 PKAFKHKHHLTEHKRLHSGEKPFQC 198
K+FK K+ L H R+H+GEK
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 26.9 bits (59), Expect = 2.0
Identities = 8/50 (16%), Positives = 16/50 (32%)
Query: 25 SSNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSVLQKCSSSY 74
+SC + + CD+ F+ L H V +++
Sbjct: 9 PIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH 58
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 58.0 bits (141), Expect = 3e-12
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 158 HKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPF 196
G++PY+C +C KAF K L H R+H+G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 41.0 bits (97), Expect = 6e-06
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
GEKP++C +C K FS GS H+
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHI 31
Score = 37.5 bits (88), Expect = 1e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPY 168
GE + CDQC K F++ SL H H+G P
Sbjct: 7 GGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 29.1 bits (66), Expect = 0.11
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + CDQC K F++ SL H H
Sbjct: 7 GGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 58.0 bits (141), Expect = 4e-12
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+ + Y C EC KAF HLT H+++H+ +
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 37.6 bits (88), Expect = 1e-04
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 185 EHKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+ K + C +C K F+ ++H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 31.4 bits (72), Expect = 0.019
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
+ C++C K F + L RH+ H+ +
Sbjct: 9 DSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 26.4 bits (59), Expect = 1.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 38 GEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+ C++C K F + L RH+ H+
Sbjct: 9 DSKSYNCNECGKAFTRIFHLTRHQKIHT 36
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 57.1 bits (139), Expect = 8e-12
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 158 HKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPF 196
G++PY C C F+H L H R+H+G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 43.6 bits (104), Expect = 7e-07
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
GEKP+ C C RF H + H+
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 34.0 bits (79), Expect = 0.002
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPY 168
GE + C+ C F +L H H+G P
Sbjct: 7 GGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 25.5 bits (57), Expect = 2.3
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEH 64
GE + C+ C F +L H H
Sbjct: 7 GGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 56.1 bits (136), Expect = 2e-11
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCC 199
SG++ + C EC K F + L H+R+H GEK
Sbjct: 1 GSSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 38.3 bits (90), Expect = 6e-05
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEK C +C K F + + H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 34.1 bits (79), Expect = 0.002
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE CD+C K F S+L H+ H G++
Sbjct: 8 SGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 26.4 bits (59), Expect = 1.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
SGE CD+C K F S+L H+ H
Sbjct: 8 SGEKSHTCDECGKNFCYISALRIHQRVHM 36
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 55.7 bits (135), Expect = 3e-11
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 158 HKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPF 196
G+ PY C +C K+F + L H+R S P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 38.0 bits (89), Expect = 8e-05
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYK 169
+ GE +LC QC K F + SLA H+ S P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 37.6 bits (88), Expect = 1e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
GE P+ C +C K F+ GS + H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQ 31
Score = 30.7 bits (70), Expect = 0.034
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 36 NSGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+ GE +LC QC K F + SLA H+ S
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 55.7 bits (135), Expect = 3e-11
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++P++C EC F L +H R H P
Sbjct: 1 GSSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 41.0 bits (97), Expect = 7e-06
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
+GEKPFQC +C FS S S +H+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHL 32
Score = 39.1 bits (92), Expect = 4e-05
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
+GE F C +C F+ SL +H H P
Sbjct: 8 TGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 29.1 bits (66), Expect = 0.16
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+GE F C +C F+ SL +H H
Sbjct: 8 TGEKPFQCKECGMNFSWSCSLFKHLRSHE 36
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 54.6 bits (132), Expect = 6e-11
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQC 198
SG++PY C EC + F + L +H+++H+ +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 35.8 bits (83), Expect = 6e-04
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 190 HSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKP+ C +C + FS + QH
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQH 29
Score = 32.3 bits (74), Expect = 0.009
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKC 170
SGE + C +C + F+ ++ L +H+ H+ +
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 26.5 bits (59), Expect = 0.96
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
SGE + C +C + F+ ++ L +H+ H+
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 54.0 bits (129), Expect = 2e-10
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 139 QFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+++C++C K S L +H H+ RPY C C +FK K +LT+H + + K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 48.9 bits (116), Expect = 1e-08
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
Y C EC K L +H R H+ +P+ C C F G+ ++HM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 27.8 bits (61), Expect = 0.60
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSG 164
++ + C C+ F +L +H +
Sbjct: 24 HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 26.2 bits (57), Expect = 2.3
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 36 NSGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
++ + C C+ F +L +H +
Sbjct: 24 HTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 50.8 bits (122), Expect = 2e-09
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 156 ARHKYEHSGQRPYKCVE--CPKAFKHKHHLTEHKRLHSGEKPFQC 198
+G++P+ C C F L+ H+R HSG KP
Sbjct: 1 GSSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 38.4 bits (90), Expect = 8e-05
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 186 HKRLHSGEKPFQCC--KCLKRFSHSGSYSQHM 215
+GEKPF C C RFS S S+H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHR 34
Score = 38.1 bits (89), Expect = 8e-05
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 135 SGEGQFLCDQ--CDKVFAKHSSLARHKYEHSGQRPYKC 170
+GE F C C F++ L+RH+ HSG +P
Sbjct: 8 TGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 26.1 bits (58), Expect = 1.8
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 37 SGEGQFLCDQ--CDKVFAKHSSLARHKYEHS 65
+GE F C C F++ L+RH+ HS
Sbjct: 8 TGEKPFACTWPGCGWRFSRSDELSRHRRSHS 38
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 50.2 bits (120), Expect = 4e-09
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 156 ARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+G+ P+KC +C + F +++L +H+R H+ +
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 34.4 bits (79), Expect = 0.002
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRP 167
+GE F C +CD+VF + + L +H+ H+ +
Sbjct: 8 AGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 34.1 bits (78), Expect = 0.003
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQH 214
+GE PF+C KC + F+ QH
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 31.4 bits (71), Expect = 0.019
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+GE F C +CD+VF + + L +H+ H+
Sbjct: 8 AGENPFKCSKCDRVFTQRNYLVQHERTHA 36
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 49.9 bits (119), Expect = 4e-09
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 161 EHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKC 201
++ C C K F+ +HL HK HSGEKP+
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 39.2 bits (91), Expect = 3e-05
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 139 QFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVEC 173
Q C+ C K+F L RHK HSG++PY
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 27.6 bits (61), Expect = 0.44
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 41 QFLCDQCDKVFAKHSSLARHKYEHS 65
Q C+ C K+F L RHK HS
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHS 36
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 50.1 bits (119), Expect = 2e-08
Identities = 19/94 (20%), Positives = 25/94 (26%), Gaps = 5/94 (5%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARH-----KYEHSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
G +F C C + L H Y + K L E +
Sbjct: 16 GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE 75
Query: 191 SGEKPFQCCKCLKRFSHSGSYSQHMNHRYSYCKP 224
+K +C C F S HM Y K
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKV 109
Score = 40.5 bits (94), Expect = 5e-05
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 153 SSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRL--HSGEKPFQCCKCLKRFSHSGS 210
SS + +G ++C +C A+ LT H H + + +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 211 YSQHMNH 217
+
Sbjct: 65 KRSLLEM 71
Score = 39.0 bits (90), Expect = 2e-04
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 134 NSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEH--KRLHS 191
+ + + SL + + Q+ KC+ C +F+ L+ H K H
Sbjct: 47 DDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY 106
Query: 192 GEKPFQ 197
+
Sbjct: 107 QKVSGP 112
Score = 39.0 bits (90), Expect = 2e-04
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 182 HLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMNHRYSY 221
+ + +G F+C C + + HMN Y
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHY 45
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 48.9 bits (116), Expect = 2e-08
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 153 SSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYS 212
S + + H G R KC +C F + L+ K C KC K + +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALN 56
Query: 213 QHM 215
+
Sbjct: 57 KDE 59
Score = 46.6 bits (110), Expect = 1e-07
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
G+ C +C +F + S+L+R K C +C K + L + + SG+K
Sbjct: 14 LGDRSQKCSKCGIIFIRRSTLSRRK-------TPMCEKCRKDSCQEAALNKDEGNESGKK 66
Query: 195 PF 196
Sbjct: 67 TS 68
Score = 37.7 bits (87), Expect = 2e-04
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 182 HLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMNHRYSYC 222
+ +++H G++ +C KC F + S+ C
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKC 45
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 40.0 bits (94), Expect = 1e-05
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 186 HKRLHSGEKPFQCCKCLKRFSHSGSYSQHM 215
R +G KPFQC C + FS S + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 38.9 bits (91), Expect = 3e-05
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
+G +P++C +C ++F HL H++ H
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.1 bits (58), Expect = 1.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 37 SGEGQFLCDQCDKVFAKHSSLARHKYEHSVL 67
+G F C CD+ F++ LA H+ H ++
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 26.1 bits (58), Expect = 1.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYEH 162
+G F C CD+ F++ LA H+ H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 42.2 bits (98), Expect = 2e-05
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 149 FAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHS 208
SS + C C F L +H R E C C K F+ +
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTST 113
Query: 209 GSYSQHMNHRYSYC 222
S H+ +++ C
Sbjct: 114 DSALDHVCKKHNIC 127
Score = 28.4 bits (62), Expect = 1.1
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 1/76 (1%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCC 199
+ ++ L + + P+ + F C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQ-LLDESSYLYRLLASKAISQFVCP 78
Query: 200 KCLKRFSHSGSYSQHM 215
CL FS S S QH+
Sbjct: 79 LCLMPFSSSVSLKQHI 94
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 38.8 bits (91), Expect = 3e-05
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
R + C C +AF + HL H R H+ EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.9 bits (60), Expect = 0.54
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 139 QFLCDQCDKVFAKHSSLARHKYEHSGQR 166
F+C+ C + FA+ L RH H+ ++
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 24.6 bits (54), Expect = 3.8
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 41 QFLCDQCDKVFAKHSSLARHKYEHS 65
F+C+ C + FA+ L RH H+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHT 26
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 39.5 bits (91), Expect = 1e-04
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 136 GEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+ + C C+ + H E + C C F EH+ K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSH--ERLCRNAAVCPYCSLRFFSPELKQEHES-KCEYKK 69
Query: 196 FQCCKCLKRFSHSGSYSQH 214
C +C++ F S S +H
Sbjct: 70 LTCLECMRTFKSSFSIWRH 88
Score = 31.8 bits (71), Expect = 0.055
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHK 187
+C C F H+ + C+EC + FK + H+
Sbjct: 43 AVCPYCSLRFFSPELKQEHE-SKCEYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 27.9 bits (61), Expect = 1.1
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 2/54 (3%)
Query: 164 GQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMNH 217
+ Y+C C H+RL C C RF +H +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESK 64
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 40.2 bits (93), Expect = 4e-04
Identities = 14/93 (15%), Positives = 27/93 (29%)
Query: 99 EGDESLDRMDEDSSERKLKSRLMMSSNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARH 158
+ D+S ++ + + L S N + + + + +KH +
Sbjct: 112 DTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGL 171
Query: 159 KYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHS 191
S Y+C C L H H
Sbjct: 172 PPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Score = 36.0 bits (82), Expect = 0.009
Identities = 8/76 (10%), Positives = 14/76 (18%), Gaps = 7/76 (9%)
Query: 150 AKHSSLARHKYEHSGQRPYK------CVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLK 203
+ ++ G K S +QC C
Sbjct: 129 NANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSA 188
Query: 204 RFSHSGSYSQHM-NHR 218
H+ +H
Sbjct: 189 VLFSPLDLDAHVASHG 204
Score = 33.7 bits (76), Expect = 0.052
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 83 NRPTASYPELSDMGSLEGDESLDRMDEDSSERKLKSRLMMSSNGTMSCADDNSGEG---- 138
+ T S +++ L ++D + S+++ + +R+ +++ +S G
Sbjct: 118 AQVTYSDTGINNANELSRSGNVD-NEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTAS 176
Query: 139 ---QFLCDQCDKVFAKHSSLARHKYEHS 163
+ C C V L H H
Sbjct: 177 SGHGYQCHVCSAVLFSPLDLDAHVASHG 204
Score = 32.1 bits (72), Expect = 0.14
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 41 QFLCDQCDKVFAKHSSLARHKYEHSV 66
+ C C V L H H +
Sbjct: 180 GYQCHVCSAVLFSPLDLDAHVASHGL 205
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 34.3 bits (79), Expect = 0.002
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 161 EHSGQRPYKCV--ECPKAFKHKHHLTEHKRLHSGEK 194
+ ++ + C C K + HL H R H+GE+
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 26.2 bits (58), Expect = 1.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 133 DNSGEGQFLCD--QCDKVFAKHSSLARHKYEHSGQR 166
D + Q +C C KV+ K S L H H+G+R
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 33.7 bits (78), Expect = 0.002
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 166 RPYKC--VECPKAFKHKHHLTEHKRLHSGEK 194
RP+ C C K F L HKR H+GEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.8 bits (60), Expect = 0.65
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 140 FLCD--QCDKVFAKHSSLARHKYEHSGQR 166
F+C C K F + L RHK H+G++
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 33.2 bits (75), Expect = 0.004
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+PY C+ C + F L H R+H+GEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 24.3 bits (52), Expect = 4.7
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQR 166
++C C + FA +L RH H+G++
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 32.2 bits (72), Expect = 0.011
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
+ + +C EC K F+H L EH+ LH+GE
Sbjct: 8 AAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 24.9 bits (53), Expect = 5.0
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 129 SCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQ 165
S + + C +C K+F S L H+ H+G+
Sbjct: 2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.9 bits (74), Expect = 0.016
Identities = 12/59 (20%), Positives = 18/59 (30%)
Query: 138 GQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLHSGEKPF 196
G C C V K + E+ Q + C C K + + H + P
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 31.8 bits (71), Expect = 0.016
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLHSG 192
SG++PY C C FK K ++ H R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 25.6 bits (55), Expect = 2.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 190 HSGEKPFQCCKCLKRFSHSGSYSQH 214
SGEKP+ C C RF S H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYH 29
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 33.1 bits (75), Expect = 0.020
Identities = 11/53 (20%), Positives = 18/53 (33%)
Query: 107 MDEDSSERKLKSRLMMSSNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHK 159
+DE E + + + D G G C C + F ++L H
Sbjct: 18 LDEIHRELRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHF 70
Score = 30.4 bits (68), Expect = 0.18
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 16 VKLKSRLMMSSNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHK 61
++ + + D G G C C + F ++L H
Sbjct: 25 LRPQGSARPQPDPNAEFDPDLPGGGLHRCLACARYFIDSTNLKTHF 70
Score = 25.8 bits (56), Expect = 7.5
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 168 YKCVECPKAFKHKHHLTEHKR 188
++C+ C + F +L H R
Sbjct: 51 HRCLACARYFIDSTNLKTHFR 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.025
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 40/127 (31%)
Query: 78 RHSICNRPTASYP---ELSD--MGSL-EGDESLDRMDEDSSERKLKSRLMMSSNG-TMSC 130
H + PTAS+ +L + L E E DE ++ +L + + G S
Sbjct: 17 EHVL-LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL----GYVSSL 71
Query: 131 ADDNSG--------------EGQFLCD------------QCDKVFAKHSSLARHKYE--H 162
+ + E +L + D K L ++
Sbjct: 72 VEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 163 SGQRPYK 169
+RP+
Sbjct: 132 MAKRPFD 138
Score = 30.8 bits (69), Expect = 0.38
Identities = 26/146 (17%), Positives = 44/146 (30%), Gaps = 46/146 (31%)
Query: 35 DNSGEGQFLCDQCDKVFAKHSSLARHKYEHSVLQKCSSSYNYPRHSIC------------ 82
S Q + ++ D F + Y S+L N P +
Sbjct: 1637 KTSKAAQDVWNRADNHF-------KDTYGFSILDIVI---NNPVNLTIHFGGEKGKRIRE 1686
Query: 83 NRPTASYPELSDMGSLEGDESLDRMDEDSS-------ERKLKS------RLMMSSNGTMS 129
N + + D G L+ ++ ++E S+ + L + L M
Sbjct: 1687 NYSAMIFETIVD-GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT-----LME 1740
Query: 130 CA--DDNSGEGQFLCDQCDKVFAKHS 153
A +D +G D FA HS
Sbjct: 1741 KAAFEDLKSKGLI---PADATFAGHS 1763
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 32.4 bits (73), Expect = 0.027
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 122 MSSNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARH-KYEHSGQR---PYKCVECPKAF 177
M+ + + EG + C C + H EH Y CVEC
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 178 KHKHHLTEH-KRLHSGEKPFQC 198
K L+EH + H GE+ F+
Sbjct: 61 KRYDALSEHNLKYHPGEENFKL 82
Score = 29.0 bits (64), Expect = 0.41
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 4/67 (5%)
Query: 152 HSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEH-KRLHSG---EKPFQCCKCLKRFSH 207
H ++ + Y+C C + T H H + C +C
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 208 SGSYSQH 214
+ S+H
Sbjct: 63 YDALSEH 69
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 33.6 bits (76), Expect = 0.035
Identities = 6/49 (12%), Positives = 14/49 (28%)
Query: 142 CDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHHLTEHKRLH 190
+ K S H+ G++ + + + + L L
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 30.6 bits (68), Expect = 0.33
Identities = 9/53 (16%), Positives = 15/53 (28%)
Query: 170 CVECPKAFKHKHHLTEHKRLHSGEKPFQCCKCLKRFSHSGSYSQHMNHRYSYC 222
+ K T H+ L GEK Q K + + ++
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (68), Expect = 0.043
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLHS 191
++ +KC +C K F +LT+H+R+H+
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 26.3 bits (57), Expect = 1.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 190 HSGEKPFQCCKCLKRFSHSGSYSQHM 215
EK F+C KC K FS S +QH
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHE 32
Score = 24.8 bits (53), Expect = 4.5
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 31 SCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
S E F C++C+K F+ L +H+ H+
Sbjct: 2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 24.8 bits (53), Expect = 4.5
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 129 SCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 163
S E F C++C+K F+ L +H+ H+
Sbjct: 2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (67), Expect = 0.059
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
S ++ ++C EC + F L EH+ LH G+K
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 25.9 bits (56), Expect = 2.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 129 SCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQR 166
S S E C +C ++F ++ SL H+ H GQ+
Sbjct: 2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 29.8 bits (66), Expect = 0.066
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSG 192
RPY C C K F KH + H R+H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.8 bits (66), Expect = 0.067
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+PYKC +C A K +L H R H+GEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 24.0 bits (51), Expect = 7.1
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQR 166
+ C QC A ++L H +H+G++
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.7 bits (66), Expect = 0.073
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 162 HSGQRPYKCVECPKAFKHKHHLTEHKRLHS 191
SG+RP+ C C AF K + H ++H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 24.3 bits (52), Expect = 6.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 190 HSGEKPFQCCKCLKRFSHSGSYSQHM 215
SG++PF C CL F+ + ++H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL 27
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 30.7 bits (68), Expect = 0.11
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 135 SGEGQFLCDQCDKVFAKHSSLARHKYE--HSGQRPYKCVECPKAFKHKHHLTEHKRLHSG 192
G+ +C C+ V K + E Q KC C K FK K L H
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 193 EKP 195
KP
Sbjct: 80 AKP 82
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.7 bits (63), Expect = 0.16
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 163 SGQRPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
S + + C C K FK KH L H R+H+ EK
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 28.0 bits (62), Expect = 0.28
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 166 RPYKC--VECPKAFKHKHHLTEHKRLHS 191
RPY C C KAF H L HK+ H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 23.8 bits (51), Expect = 7.9
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 39 EGQFLCD--QCDKVFAKHSSLARHKYEHS 65
+ + CD CDK F ++ L RHK H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 23.8 bits (51), Expect = 7.9
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 137 EGQFLCD--QCDKVFAKHSSLARHKYEHS 163
+ + CD CDK F ++ L RHK H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 27.8 bits (61), Expect = 0.31
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 166 RPYKCVECPKAFKHKHHLTEHKRLHSGEK 194
+P +CV C KAF L H R H+GEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>3jql_A Phospholipase A2 isoform 3; phospholipase A2, hexapeptide,
hydrolase, calcium, disulfide bond, lipid degradation,
metal-binding, secreted; 1.20A {Naja sagittifera} PDB:
1mf4_A 3jq5_A 1ln8_A 3jti_A 3nju_A* 3osh_A* 3q4y_A
1t37_A 1zm6_A 3gci_A 1yxl_A 1oxr_A 1td7_A* 1sz8_A 1a3d_A
1a3f_A 1psh_A 2osh_A 1poa_A 1pob_A* ...
Length = 119
Score = 28.7 bits (64), Expect = 0.80
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 10/58 (17%)
Query: 26 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSVLQKCSSSYNYPRHSICN 83
+ GT++C DN+ +C CD++ A A Y ++YN + CN
Sbjct: 72 TQGTLTCKGDNNACAASVC-DCDRLAAI--CFAGAPYN-------DANYNIDLKARCN 119
Score = 27.9 bits (62), Expect = 1.4
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 124 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVEC 173
+ GT++C DN+ +C CD++ A A Y + C
Sbjct: 72 TQGTLTCKGDNNACAASVC-DCDRLAAI--CFAGAPYNDANYNIDLKARC 118
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.1
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 7/27 (25%)
Query: 109 EDSSERKLKSRLMMSSNGTMSCADDNS 135
E + +KL++ L + ADD++
Sbjct: 18 EKQALKKLQASLKLY-------ADDSA 37
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.0 bits (57), Expect = 1.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHSGEK 194
+ C ECPK F HLT H LH +K
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
>1gp7_A Phospholipase A2; snake venom, KING cobra, cardiotoxic activity,
myotoxic activity, pancreatic loop, hydrolase, lipid
degradation, calcium; 2.6A {Ophiophagus hannah} SCOP:
a.133.1.2
Length = 151
Score = 28.1 bits (62), Expect = 1.4
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 26 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
S T++C DN F+C CD+V A A Y ++
Sbjct: 105 SERTVTCKADNDECAAFIC-NCDRVAAH--CFAASPYNNN 141
Score = 28.1 bits (62), Expect = 1.4
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 124 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 163
S T++C DN F+C CD+V A A Y ++
Sbjct: 105 SERTVTCKADNDECAAFIC-NCDRVAAH--CFAASPYNNN 141
>1m8t_A Phospholipase A2; twinned crystal, alpha, beta, hydrolase; 2.10A
{Ophiophagus hannah} SCOP: a.133.1.2
Length = 119
Score = 27.2 bits (60), Expect = 2.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 26 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
S GT++C DN F+C CD+V A A Y
Sbjct: 73 SEGTLTCKADNDECAAFVC-DCDRVAAIC--FAGAPYNKE 109
Score = 27.2 bits (60), Expect = 2.1
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 124 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 163
S GT++C DN F+C CD+V A A Y
Sbjct: 73 SEGTLTCKADNDECAAFVC-DCDRVAAIC--FAGAPYNKE 109
>4e4c_A Phospholipase A2; hydrolase; HET: MES; 1.80A {Notechis scutatus
scutatus} PDB: 1ae7_A* 2not_A
Length = 119
Score = 27.2 bits (60), Expect = 2.5
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 124 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVEC 173
C + +F+C CD A A+ Y ++ C
Sbjct: 72 GENGPYCRNIKKKCLRFVC-DCDVEAAFC--FAKAPYNNANWNIDTKKRC 118
Score = 26.4 bits (58), Expect = 3.7
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 26 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKY 62
C + +F+C CD A A+ Y
Sbjct: 72 GENGPYCRNIKKKCLRFVC-DCDVEAAFC--FAKAPY 105
>1g0z_A Phospholipase A2; toxin; 2.18A {Bungarus caeruleus} SCOP: a.133.1.2
PDB: 1u4j_A* 1g2x_A 2osn_A 1dpy_A 1fe5_A 1tc8_A* 1po8_A*
Length = 118
Score = 27.2 bits (60), Expect = 2.6
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 124 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVEC 173
+ ++C D + +F+C CD+ A A Y + C
Sbjct: 71 TKPNITCNDTSDSCARFIC-DCDRTAAI--CFASAPYNINNIMISASTSC 117
Score = 26.4 bits (58), Expect = 3.8
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 26 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+ ++C D + +F+C CD+ A A Y +
Sbjct: 71 TKPNITCNDTSDSCARFIC-DCDRTAAI--CFASAPYNIN 107
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 25.3 bits (55), Expect = 2.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHSGEKP 195
+ C ECPK F HL++H LH
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
>1g4i_A Phospholipase A2; lipid degradation, hydrolase; 0.97A {Bos taurus}
SCOP: a.133.1.2 PDB: 1bvm_A 1fdk_A* 1bp2_A 1mkt_A
1mkv_A* 1une_A 2bpp_A 4bp2_A 2bp2_A 1kvy_A 1bpq_A 2zp3_A
1ceh_A 3bp2_A 2zp5_A 1kvx_A 1kvw_A 2zp4_A 1irb_A 2bax_A*
...
Length = 123
Score = 26.9 bits (59), Expect = 2.9
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 26 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
SN ++C+ +N+ F+C CD+ A ++ Y
Sbjct: 78 SNNEITCSSENNACEAFIC-NCDRNAAI--CFSKVPYNKE 114
Score = 26.9 bits (59), Expect = 2.9
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 124 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 163
SN ++C+ +N+ F+C CD+ A ++ Y
Sbjct: 78 SNNEITCSSENNACEAFIC-NCDRNAAI--CFSKVPYNKE 114
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.3 bits (54), Expect = 3.5
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 165 QRPYKCVECPKAFKHKHHLTEHKRLHSGE 193
++ Y+C +C F + HL +H++ H+ +
Sbjct: 10 RKRYECSKCQATFNLRKHLIQHQKTHAAK 38
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 24.8 bits (53), Expect = 4.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 33 ADDNSGEGQFLCDQCDKVFAKHSSLARH 60
+ +SG G F C++CD F++ +SL RH
Sbjct: 2 SSGSSGNGAFFCNECDCRFSEEASLKRH 29
Score = 24.8 bits (53), Expect = 4.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 131 ADDNSGEGQFLCDQCDKVFAKHSSLARH 158
+ +SG G F C++CD F++ +SL RH
Sbjct: 2 SSGSSGNGAFFCNECDCRFSEEASLKRH 29
>1p7o_A Phospholipase A2, mipla4; pancreatic loop, HYDR; 2.30A {Micropechis
ikaheka} SCOP: a.133.1.2 PDB: 1pwo_A 1ozy_A
Length = 124
Score = 26.1 bits (57), Expect = 5.1
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 26 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKY 62
++G ++C D N F+C CD+ A A+ Y
Sbjct: 78 TDGKLTCNDQNDKCKLFIC-NCDRTAAM--CFAKAPY 111
Score = 26.1 bits (57), Expect = 5.1
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 124 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKY 160
++G ++C D N F+C CD+ A A+ Y
Sbjct: 78 TDGKLTCNDQNDKCKLFIC-NCDRTAAM--CFAKAPY 111
>1bun_A BETA2-bungarotoxin; hydrolase, presynaptic neurotoxin; 2.45A
{Bungarus multicinctus} SCOP: a.133.1.2
Length = 120
Score = 26.1 bits (57), Expect = 6.6
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 26 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 65
+ T+ C + +C CD+ A +Y
Sbjct: 73 TKRTIICYGAAGTCARIVC-DCDRTAALC--FGNSEYIEG 109
Score = 26.1 bits (57), Expect = 6.6
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 124 SNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKYEHS 163
+ T+ C + +C CD+ A +Y
Sbjct: 73 TKRTIICYGAAGTCARIVC-DCDRTAALC--FGNSEYIEG 109
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 26.4 bits (57), Expect = 6.9
Identities = 11/101 (10%), Positives = 19/101 (18%), Gaps = 15/101 (14%)
Query: 140 FLCDQCDKVFAKHSSLARHKYEHSGQRPYKCVECPKAFKHKHH-------------LTEH 186
+C+QC+ F H + + C C K +
Sbjct: 15 VMCNQCEFCF--HLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGSLSLDGADSTGVVAK 72
Query: 187 KRLHSGEKPFQCCKCLKRFSHSGSYSQHMNHRYSYCKPYRE 227
+ K + L Q
Sbjct: 73 LSPANQRKCERVLLALFCHEPCRPLHQLATDSTFSLDQPGG 113
>1le6_A Group X secretory phospholipase A2; human phosphatidylcholine
2-acylhydrolase GX, GX SPLA2, SPLA2-X; 1.97A {Homo
sapiens} SCOP: a.133.1.2 PDB: 1le7_A
Length = 123
Score = 25.7 bits (56), Expect = 7.0
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 101 DESLDRMDEDSSERKLKSRLMMSSNGTMSCADDNSGEGQFLCDQCDKVFAKHSSLARHKY 160
D R +E K + N ++ C + + LC +CD+ A LA+ +Y
Sbjct: 47 DCCYTRAEEAGCSPKTERYSWQCVNQSVLCGPAENKCQELLC-KCDQEIAN--CLAQTEY 103
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 23.9 bits (51), Expect = 8.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 168 YKCVECPKAFKHKHHLTEH 186
+ C CPK F L++H
Sbjct: 3 FACPACPKRFMRSDALSKH 21
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 23.6 bits (50), Expect = 9.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 168 YKCVECPKAFKHKHHLTEHKRLHS 191
YKC C ++F K L+ H+R+H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.130 0.407
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,259,592
Number of extensions: 171901
Number of successful extensions: 1470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1286
Number of HSP's successfully gapped: 831
Length of query: 227
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,188,903
Effective search space: 573879711
Effective search space used: 573879711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)