BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1615
(295 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|157131847|ref|XP_001655965.1| coup transcription factor [Aedes aegypti]
Length = 486
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 118/121 (97%), Positives = 120/121 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 113 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 172
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTTGK
Sbjct: 173 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKM 232
Query: 121 I 121
+
Sbjct: 233 L 233
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/109 (74%), Positives = 86/109 (78%), Gaps = 14/109 (12%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGRVPP+Q P GL GQ++ + NGD A G NGHS YLSSYISLLLR
Sbjct: 49 AVQRGRVPPSQ---PPGLPYGQYS-IPNGD---------AVTGFNGHS-YLSSYISLLLR 94
Query: 239 AEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYPT+RY QCMQ NNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 95 AEPYPTSRYGQCMQTNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 143
>gi|312374364|gb|EFR21933.1| hypothetical protein AND_16003 [Anopheles darlingi]
Length = 566
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 118/119 (99%), Positives = 119/119 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 142 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 201
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTTGK
Sbjct: 202 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 260
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/108 (72%), Positives = 85/108 (78%), Gaps = 14/108 (12%)
Query: 180 VQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRA 239
VQRGRVPP+Q P G+ GQ++ + NG+ A G NGHS YLSSYISLLLRA
Sbjct: 79 VQRGRVPPSQ---PPGIPYGQYS-IPNGE---------AVTGFNGHS-YLSSYISLLLRA 124
Query: 240 EPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
EPYPT+RY QCMQ NNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 125 EPYPTSRYGQCMQTNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 172
>gi|347968055|ref|XP_003436151.1| AGAP002544-PB [Anopheles gambiae str. PEST]
gi|333468185|gb|EGK96862.1| AGAP002544-PB [Anopheles gambiae str. PEST]
Length = 717
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/119 (99%), Positives = 119/119 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 308 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 367
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTTGK
Sbjct: 368 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 426
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 95/135 (70%), Gaps = 19/135 (14%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP+Q P G+ GQ++ + NGD+ +
Sbjct: 218 PIDQHHRNQCQFCRLRKCLKMGMRREAVQRGRVPPSQ---PPGIPYGQYS-IPNGDTVT- 272
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
G NGHS YLSSYISLLLRAEPYPT+RY QCMQ NNIMGIDNICELAARLLFS
Sbjct: 273 --------GFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQTNNIMGIDNICELAARLLFS 323
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 324 AVEWARNIPFFPDLQ 338
>gi|170048340|ref|XP_001851989.1| coup transcription factor [Culex quinquefasciatus]
gi|167870435|gb|EDS33818.1| coup transcription factor [Culex quinquefasciatus]
Length = 489
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 118/121 (97%), Positives = 120/121 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 121 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 180
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTTGK
Sbjct: 181 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKM 240
Query: 121 I 121
+
Sbjct: 241 L 241
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 83/115 (72%), Positives = 87/115 (75%), Gaps = 14/115 (12%)
Query: 173 SSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSY 232
S L T VQRGRVPP+Q P GL GQ+ + NGD A G NGHS YLSSY
Sbjct: 51 SHELITPVQRGRVPPSQ---PPGLPYGQYT-IPNGD---------AVTGFNGHS-YLSSY 96
Query: 233 ISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
ISLLLRAEPYPT+RY QCMQ NNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 97 ISLLLRAEPYPTSRYGQCMQTNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 151
>gi|195329610|ref|XP_002031503.1| GM24010 [Drosophila sechellia]
gi|194120446|gb|EDW42489.1| GM24010 [Drosophila sechellia]
Length = 1085
Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 116/119 (97%), Positives = 119/119 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 343 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 402
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTTGK
Sbjct: 403 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 461
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/134 (64%), Positives = 92/134 (68%), Gaps = 19/134 (14%)
Query: 155 KPLPLNQHYT-ATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAA 213
K +P N H T +T P VQRGRVPP Q L G G Q A NGD
Sbjct: 258 KKVPQNGHETRSTCPRTP-------PVQRGRVPPTQPGLAGMHGQYQIA---NGD----- 302
Query: 214 SAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSA 273
+ AG NGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFSA
Sbjct: 303 --PMGIAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFSA 359
Query: 274 VEWARNIPFFPDLQ 287
VEWA+NIPFFP+LQ
Sbjct: 360 VEWAKNIPFFPELQ 373
>gi|345494381|ref|XP_001599309.2| PREDICTED: hypothetical protein LOC100114206 [Nasonia vitripennis]
Length = 465
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 115/118 (97%), Positives = 118/118 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDNICELAARLLFSAVEWA+NIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 80 LGIDNICELAARLLFSAVEWAKNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 139
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTTG
Sbjct: 140 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 197
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/109 (75%), Positives = 89/109 (81%), Gaps = 11/109 (10%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
+VQRGRVPP+Q PG GQF LTNGDS S +S +NGHS YLSSYISLLLR
Sbjct: 13 SVQRGRVPPSQQSHPGA--TGQFT-LTNGDSVSCSS-------INGHS-YLSSYISLLLR 61
Query: 239 AEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYP +RYSQCMQPNNI+GIDNICELAARLLFSAVEWA+NIPFFPDLQ
Sbjct: 62 AEPYPNSRYSQCMQPNNILGIDNICELAARLLFSAVEWAKNIPFFPDLQ 110
>gi|24646228|ref|NP_731681.1| seven up, isoform A [Drosophila melanogaster]
gi|62512142|sp|P16376.3|7UP2_DROME RecName: Full=Steroid receptor seven-up, isoform A; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoform A
gi|23171091|gb|AAN13541.1| seven up, isoform A [Drosophila melanogaster]
Length = 746
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 116/119 (97%), Positives = 119/119 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 336 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 395
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTTGK
Sbjct: 396 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 454
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 243 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIA---NGD---- 295
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 296 ---PMGIAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 351
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 352 AVEWAKNIPFFPELQ 366
>gi|307171274|gb|EFN63200.1| Steroid receptor seven-up, isoform A [Camponotus floridanus]
Length = 229
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 117/119 (98%), Positives = 119/119 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 104 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 163
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTTG+
Sbjct: 164 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGE 222
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 90/112 (80%), Positives = 94/112 (83%), Gaps = 11/112 (9%)
Query: 176 LSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISL 235
L AVQRGRVPP+Q LPG PGQFA LTNGD A+A AGLNGH+ YLSSYISL
Sbjct: 34 LRVAVQRGRVPPSQPSLPGL--PGQFA-LTNGD-------AVACAGLNGHN-YLSSYISL 82
Query: 236 LLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
LLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 83 LLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 134
>gi|322800405|gb|EFZ21409.1| hypothetical protein SINV_07844 [Solenopsis invicta]
Length = 204
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/119 (98%), Positives = 119/119 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 70 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 129
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTTG+
Sbjct: 130 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGE 188
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/110 (80%), Positives = 93/110 (84%), Gaps = 11/110 (10%)
Query: 178 TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLL 237
+AVQRGRVPP+Q LPG PGQFA LTNGD A+A A LNGHS YLSSYISLLL
Sbjct: 2 SAVQRGRVPPSQPSLPGL--PGQFA-LTNGD-------AVACASLNGHS-YLSSYISLLL 50
Query: 238 RAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
RAEPYPT+RY QCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 51 RAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 100
>gi|332021408|gb|EGI61776.1| Steroid receptor seven-up, isoform A [Acromyrmex echinatior]
Length = 326
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/118 (99%), Positives = 118/118 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 138 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 197
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTTG
Sbjct: 198 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 255
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 89/110 (80%), Positives = 92/110 (83%), Gaps = 11/110 (10%)
Query: 178 TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLL 237
T VQRGRVPP+Q LPG PGQFA LTNGD A+A A LNGHS YLSSYISLLL
Sbjct: 70 TPVQRGRVPPSQPSLPGL--PGQFA-LTNGD-------AVACASLNGHS-YLSSYISLLL 118
Query: 238 RAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
RAEPYPT+RY QCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 119 RAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 168
>gi|12484038|gb|AAG53940.1| nuclear hormone receptor [Aedes aegypti]
Length = 493
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/117 (99%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 286 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 345
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 346 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 402
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 86/135 (63%), Positives = 94/135 (69%), Gaps = 19/135 (14%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP+Q P GL GQ++ + NGD
Sbjct: 196 PIDQHHRNQCQFCRLRKCLKMGMRREAVQRGRVPPSQ---PPGLPYGQYS-IPNGD---- 247
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
A G NGHS YLSSYISLLLRAEPYPT+RY QCMQ NNIMGIDNICELAARLLFS
Sbjct: 248 -----AVTGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQTNNIMGIDNICELAARLLFS 301
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 302 AVEWARNIPFFPDLQ 316
>gi|340729306|ref|XP_003402945.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Bombus
terrestris]
Length = 400
Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/117 (99%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 193 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 252
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 253 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 309
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/135 (68%), Positives = 100/135 (74%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP+Q LPG PGQFA LTNGD
Sbjct: 100 PIDQHHRNQCQFCRLKKCLKMGMRREAVQRGRVPPSQPSLPGL--PGQFA-LTNGD---- 152
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
A+A A LNGH+ YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 153 ---AVACANLNGHT-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 208
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 209 AVEWARNIPFFPDLQ 223
>gi|347968053|ref|XP_312394.4| AGAP002544-PA [Anopheles gambiae str. PEST]
gi|333468184|gb|EAA07520.4| AGAP002544-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/117 (99%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 308 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 367
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 368 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 424
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 95/135 (70%), Gaps = 19/135 (14%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP+Q P G+ GQ++ + NGD+ +
Sbjct: 218 PIDQHHRNQCQFCRLRKCLKMGMRREAVQRGRVPPSQ---PPGIPYGQYS-IPNGDTVT- 272
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
G NGHS YLSSYISLLLRAEPYPT+RY QCMQ NNIMGIDNICELAARLLFS
Sbjct: 273 --------GFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQTNNIMGIDNICELAARLLFS 323
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 324 AVEWARNIPFFPDLQ 338
>gi|383855696|ref|XP_003703346.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like [Megachile
rotundata]
Length = 394
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 116/117 (99%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 187 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 246
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 247 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 303
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/135 (69%), Positives = 100/135 (74%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP+Q LPG PGQFA LTNGD
Sbjct: 94 PIDQHHRNQCQFCRLKKCLKMGMRREAVQRGRVPPSQPSLPGL--PGQFA-LTNGD---- 146
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
A+A A LNGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 147 ---AVACASLNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 202
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 203 AVEWARNIPFFPDLQ 217
>gi|195396200|ref|XP_002056720.1| GJ11090 [Drosophila virilis]
gi|194143429|gb|EDW59832.1| GJ11090 [Drosophila virilis]
Length = 787
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 331 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 390
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 391 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 447
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 238 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQLA---NGD---- 290
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QC+QPNNIMGIDNICELAARLLFS
Sbjct: 291 ---PMGVAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCLQPNNIMGIDNICELAARLLFS 346
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 347 AVEWAKNIPFFPELQ 361
>gi|403182505|gb|EAT46025.2| AAEL002765-PA, partial [Aedes aegypti]
Length = 274
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 116/118 (98%), Positives = 117/118 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 66 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 125
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 126 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTA 183
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/109 (74%), Positives = 86/109 (78%), Gaps = 14/109 (12%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGRVPP+Q P GL GQ++ + NGD A G NGHS YLSSYISLLLR
Sbjct: 2 AVQRGRVPPSQ---PPGLPYGQYS-IPNGD---------AVTGFNGHS-YLSSYISLLLR 47
Query: 239 AEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYPT+RY QCMQ NNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 48 AEPYPTSRYGQCMQTNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 96
>gi|195571509|ref|XP_002103745.1| GD18809 [Drosophila simulans]
gi|194199672|gb|EDX13248.1| GD18809 [Drosophila simulans]
Length = 680
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 336 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 395
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 396 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 452
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 243 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIA---NGD---- 295
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 296 ---PMGIAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 351
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 352 AVEWAKNIPFFPELQ 366
>gi|321477464|gb|EFX88423.1| hypothetical protein DAPPUDRAFT_311322 [Daphnia pulex]
Length = 364
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 116/117 (99%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 157 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 216
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 217 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 273
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/136 (63%), Positives = 93/136 (68%), Gaps = 22/136 (16%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP+Q PG PGQ + LTNGD
Sbjct: 68 PVDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPSQH--PGF--PGQLS-LTNGD---- 118
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQP-NNIMGIDNICELAARLLF 271
GLNG YLSSYISLLLRAEPYPT+RY QCMQP NNIMGIDNICELAARLLF
Sbjct: 119 -------GGLNGSHGYLSSYISLLLRAEPYPTSRYGQCMQPSNNIMGIDNICELAARLLF 171
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 172 SAVEWARNIPFFPDLQ 187
>gi|350416858|ref|XP_003491138.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like, partial
[Bombus impatiens]
Length = 324
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 116/117 (99%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 117 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 176
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 177 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 233
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/135 (69%), Positives = 100/135 (74%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP+Q LPG PGQFA LTNGD
Sbjct: 24 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPSQPSLPGL--PGQFA-LTNGD---- 76
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
A+A A LNGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 77 ---AVACANLNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 132
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 133 AVEWARNIPFFPDLQ 147
>gi|328791488|ref|XP_392402.3| PREDICTED: steroid receptor seven-up, isoforms B/C, partial [Apis
mellifera]
Length = 344
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 116/117 (99%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 137 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 196
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 197 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 253
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/135 (69%), Positives = 100/135 (74%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP+Q LPG PGQFA LTNGD
Sbjct: 44 PIDQHHRNQCQFCRLKKCLKMGMRREAVQRGRVPPSQPSLPGL--PGQFA-LTNGD---- 96
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
A+A A LNGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 97 ---AVACASLNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 152
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 153 AVEWARNIPFFPDLQ 167
>gi|195111960|ref|XP_002000544.1| GI10282 [Drosophila mojavensis]
gi|193917138|gb|EDW16005.1| GI10282 [Drosophila mojavensis]
Length = 812
Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 332 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 391
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 392 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 448
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 239 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQLA---NGD---- 291
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QC+QPNNIMGIDNICELAARLLFS
Sbjct: 292 ---PMGVAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCLQPNNIMGIDNICELAARLLFS 347
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 348 AVEWAKNIPFFPELQ 362
>gi|194741798|ref|XP_001953374.1| GF17240 [Drosophila ananassae]
gi|190626433|gb|EDV41957.1| GF17240 [Drosophila ananassae]
Length = 826
Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 341 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 400
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 401 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 457
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 248 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIA---NGD---- 300
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 301 ---PMGIAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 356
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 357 AVEWAKNIPFFPELQ 371
>gi|195152898|ref|XP_002017373.1| GL22274 [Drosophila persimilis]
gi|194112430|gb|EDW34473.1| GL22274 [Drosophila persimilis]
Length = 777
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 332 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 391
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 392 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 448
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 239 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIA---NGD---- 291
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 292 ---PMGIAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 347
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 348 AVEWAKNIPFFPELQ 362
>gi|195443622|ref|XP_002069499.1| GK11542 [Drosophila willistoni]
gi|194165584|gb|EDW80485.1| GK11542 [Drosophila willistoni]
Length = 835
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 334 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 393
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 394 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 450
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q PG G L NGD
Sbjct: 241 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQ---PGLAGMHSQYQLANGD---- 293
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
++ AG NGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 294 ---PMSMAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 349
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 350 AVEWAKNIPFFPELQ 364
>gi|193598915|ref|XP_001944021.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Acyrthosiphon pisum]
Length = 446
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 115/117 (98%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 239 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 298
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVD+AEYSCLKAIVLFTT
Sbjct: 299 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDAAEYSCLKAIVLFTT 355
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/136 (68%), Positives = 102/136 (75%), Gaps = 10/136 (7%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLG-PGQFAALTNGDSAS 211
P++QH+ L L AVQRGRVP +Q PG G PGQ L NG++A+
Sbjct: 138 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPASQP--PGLTGLPGQLC-LANGEAAA 194
Query: 212 AASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLF 271
AA+AA A GLNGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLF
Sbjct: 195 AAAAAAGAVGLNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLF 253
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 254 SAVEWARNIPFFPDLQ 269
>gi|198454165|ref|XP_001359502.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
gi|198132680|gb|EAL28648.2| GA11038 [Drosophila pseudoobscura pseudoobscura]
Length = 777
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 332 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 391
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 392 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 448
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 239 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIA---NGD---- 291
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 292 ---PMGIAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 347
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 348 AVEWAKNIPFFPELQ 362
>gi|21744271|gb|AAM76194.1| RE08410p [Drosophila melanogaster]
gi|220947910|gb|ACL86498.1| svp-PC [synthetic construct]
gi|220957212|gb|ACL91149.1| svp-PC [synthetic construct]
Length = 543
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 336 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 395
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 396 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 452
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 243 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIA---NGD---- 295
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 296 ---PMGIAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 351
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 352 AVEWAKNIPFFPELQ 366
>gi|17737921|ref|NP_524325.1| seven up, isoform B [Drosophila melanogaster]
gi|112858|sp|P16375.1|7UP1_DROME RecName: Full=Steroid receptor seven-up, isoforms B/C; AltName:
Full=Nuclear receptor subfamily 2 group F member 3,
isoforms B/C
gi|158519|gb|AAA62770.1| seven-up protein type 1 [Drosophila melanogaster]
gi|7299588|gb|AAF54773.1| seven up, isoform B [Drosophila melanogaster]
Length = 543
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 336 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 395
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 396 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 452
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 243 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIA---NGD---- 295
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 296 ---PMGIAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 351
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 352 AVEWAKNIPFFPELQ 366
>gi|195055334|ref|XP_001994574.1| GH17319 [Drosophila grimshawi]
gi|193892337|gb|EDV91203.1| GH17319 [Drosophila grimshawi]
Length = 542
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 335 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 394
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 395 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 451
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 242 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLSGIHGQYQLA---NGD---- 294
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QC+QPNNIMGIDNICELAARLLFS
Sbjct: 295 ---PMGVAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCLQPNNIMGIDNICELAARLLFS 350
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 351 AVEWAKNIPFFPELQ 365
>gi|442618705|ref|NP_001262499.1| seven up, isoform E [Drosophila melanogaster]
gi|440217344|gb|AGB95881.1| seven up, isoform E [Drosophila melanogaster]
Length = 554
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 336 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 395
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 396 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 452
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 243 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIA---NGD---- 295
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 296 ---PMGIAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 351
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 352 AVEWAKNIPFFPELQ 366
>gi|14090242|dbj|BAB55582.1| seven-up alpha [Bombyx mori]
Length = 421
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 115/117 (98%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 214 MGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 273
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 274 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 330
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 85/136 (62%), Positives = 93/136 (68%), Gaps = 20/136 (14%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLG-PGQFAALTNGDSAS 211
P++QH+ L L AVQRGRVPP+Q P GLG PGQF L NGD
Sbjct: 123 PIDQHHRNQCQFCRLRKCLKMGMRREAVQRGRVPPSQ---PPGLGLPGQFT-LGNGD--- 175
Query: 212 AASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLF 271
AGLN H YLSSYISLLLRAEPYP +RYS C+QP N+MGIDNICELAARLLF
Sbjct: 176 ------PGAGLNNHP-YLSSYISLLLRAEPYPASRYSPCVQPTNVMGIDNICELAARLLF 228
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFP+LQ
Sbjct: 229 SAVEWARNIPFFPELQ 244
>gi|194901808|ref|XP_001980443.1| GG18706 [Drosophila erecta]
gi|195500393|ref|XP_002097354.1| GE26169 [Drosophila yakuba]
gi|190652146|gb|EDV49401.1| GG18706 [Drosophila erecta]
gi|194183455|gb|EDW97066.1| GE26169 [Drosophila yakuba]
Length = 543
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 336 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 395
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 396 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 452
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 243 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIA---NGD---- 295
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 296 ---PMGIAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 351
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 352 AVEWAKNIPFFPELQ 366
>gi|47224170|emb|CAG13090.1| unnamed protein product [Tetraodon nigroviridis]
Length = 746
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/121 (92%), Positives = 119/121 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 129 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 188
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTTGK
Sbjct: 189 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKT 248
Query: 121 I 121
I
Sbjct: 249 I 249
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 553 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 612
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 613 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 669
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 89/136 (65%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q GQFA LTNGD
Sbjct: 44 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRVPPTQP------HHGQFA-LTNGDP--- 93
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
L+ HS YLS YISLLLRAEPYPT+RY SQCMQPN +MGI+NICELAAR+LF
Sbjct: 94 ---------LHCHS-YLSGYISLLLRAEPYPTSRYGSQCMQPNAVMGIENICELAARMLF 143
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 144 SAVEWARNIPFFPDLQ 159
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 83/115 (72%), Gaps = 21/115 (18%)
Query: 174 SSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYI 233
S + AVQRGRVPP Q GQFA LTNGD L+ HS YLS YI
Sbjct: 489 SLFTAAVQRGRVPPTQP------HHGQFA-LTNGDP------------LHCHS-YLSGYI 528
Query: 234 SLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
SLLLRAEPYPT+RY SQCMQPN +MGI+NICELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 529 SLLLRAEPYPTSRYGSQCMQPNAVMGIENICELAARMLFSAVEWARNIPFFPDLQ 583
>gi|145228046|gb|ABP48744.1| COUP-TF/Svp nuclear hormone receptor [Callosobruchus maculatus]
Length = 419
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/117 (96%), Positives = 115/117 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 215 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 274
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APL+AAAGLHASPM ADRVV FMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 275 APLIAAAGLHASPMCADRVVQFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 331
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 94/135 (69%), Gaps = 18/135 (13%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L + AVQRGRVPP+Q LPG P QF L + DS +
Sbjct: 124 PIDQHHRNQCQYCRLKKCMKMGMRREAVQRGRVPPSQPSLPGL--PNQF--LNSTDSVTT 179
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ L+ H+ YLSSYISLLLRAEPYPT+RY QC+QPNNIMGIDNICELAARLLFS
Sbjct: 180 S--------LSNHT-YLSSYISLLLRAEPYPTSRYGQCIQPNNIMGIDNICELAARLLFS 230
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 231 AVEWARNIPFFPDLQ 245
>gi|91092158|ref|XP_967537.1| PREDICTED: similar to COUP-TF/Svp nuclear hormone receptor
[Tribolium castaneum]
gi|270015100|gb|EFA11548.1| seven up [Tribolium castaneum]
Length = 419
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 113/117 (96%), Positives = 115/117 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 215 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 274
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APL+AAAGLHASPM ADRVV FMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 275 APLIAAAGLHASPMCADRVVQFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 331
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/135 (60%), Positives = 94/135 (69%), Gaps = 18/135 (13%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L + AVQRGRVPP+Q LPG P QF L + DS ++
Sbjct: 124 PIDQHHRNQCQYCRLKKCMKMGMRREAVQRGRVPPSQPALPGL--PNQF--LNSTDSVTS 179
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ L+ H+ YLSSYISLLLRAEPYPT+RY QC+Q NNIMGIDNICELAARLLFS
Sbjct: 180 S--------LSNHT-YLSSYISLLLRAEPYPTSRYGQCIQANNIMGIDNICELAARLLFS 230
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 231 AVEWARNIPFFPDLQ 245
>gi|24646230|ref|NP_731682.1| seven up, isoform C [Drosophila melanogaster]
gi|18447096|gb|AAL68139.1| AT29920p [Drosophila melanogaster]
gi|23171092|gb|AAF54774.2| seven up, isoform C [Drosophila melanogaster]
gi|220942234|gb|ACL83660.1| svp-PC [synthetic construct]
gi|220952448|gb|ACL88767.1| svp-PC [synthetic construct]
Length = 281
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 74 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 133
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 134 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 190
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/109 (73%), Positives = 84/109 (77%), Gaps = 11/109 (10%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGRVPP Q L G G Q A NGD + AG NGHS YLSSYISLLLR
Sbjct: 7 AVQRGRVPPTQPGLAGMHGQYQIA---NGD-------PMGIAGFNGHS-YLSSYISLLLR 55
Query: 239 AEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYPT+RY QCMQPNNIMGIDNICELAARLLFSAVEWA+NIPFFP+LQ
Sbjct: 56 AEPYPTSRYGQCMQPNNIMGIDNICELAARLLFSAVEWAKNIPFFPELQ 104
>gi|28974300|gb|AAO61416.1| COUP-TF [Branchiostoma floridae]
Length = 443
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 117/136 (86%), Positives = 124/136 (91%), Gaps = 4/136 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIP+FP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 236 MGIDNICELAARLLFSAVEWARNIPYFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 295
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 296 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSD-- 353
Query: 121 IFTGVLLKALHVDSAE 136
L A H+DS +
Sbjct: 354 --ACGLSDAAHIDSLQ 367
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/139 (58%), Positives = 92/139 (66%), Gaps = 24/139 (17%)
Query: 155 KPLPLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDS 209
+ P++QH+ L L AVQRGR+PP Q P G Q+A LTNG
Sbjct: 146 RTCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRIPPTQH--PAG---AQYA-LTNG-- 197
Query: 210 ASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAAR 268
+NGHS YLS YISLLLRAEPYPT+RY +QCMQPNNIMGIDNICELAAR
Sbjct: 198 ---------VDPINGHS-YLSGYISLLLRAEPYPTSRYGTQCMQPNNIMGIDNICELAAR 247
Query: 269 LLFSAVEWARNIPFFPDLQ 287
LLFSAVEWARNIP+FP+LQ
Sbjct: 248 LLFSAVEWARNIPYFPELQ 266
>gi|307204825|gb|EFN83383.1| Steroid receptor seven-up, isoforms B/C [Harpegnathos saltator]
Length = 458
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 112/117 (95%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDN+CELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 265 MGIDNMCELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 324
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APL+AAAGLHA+PMAADRVVAFMDHIR+FQEQVEKLKALHVD+AEYSCLKAIVLFTT
Sbjct: 325 APLIAAAGLHATPMAADRVVAFMDHIRIFQEQVEKLKALHVDTAEYSCLKAIVLFTT 381
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/122 (70%), Positives = 96/122 (78%), Gaps = 12/122 (9%)
Query: 167 ISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHS 226
+S+V + +L +AVQRGRVP +Q L G PGQF LTNGD A+A A LNGHS
Sbjct: 185 LSSVSDALALVSAVQRGRVPASQPQLSGL--PGQFT-LTNGD-------AVACANLNGHS 234
Query: 227 SYLSSYISLLLRAEPYPTARYSQCMQPN-NIMGIDNICELAARLLFSAVEWARNIPFFPD 285
YLSSYISLLLRAEPYPT RY QC+QP+ NIMGIDN+CELAARLLFSAVEWARNIPFFPD
Sbjct: 235 -YLSSYISLLLRAEPYPTTRYGQCIQPSSNIMGIDNMCELAARLLFSAVEWARNIPFFPD 293
Query: 286 LQ 287
LQ
Sbjct: 294 LQ 295
>gi|84617148|emb|CAH59197.1| seven-up protein [Cupiennius salei]
Length = 353
Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 146 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 205
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKAL VD+AEYSCLKAIVLFTT
Sbjct: 206 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALQVDAAEYSCLKAIVLFTT 262
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 79/135 (58%), Positives = 87/135 (64%), Gaps = 26/135 (19%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPPNQ +LTNGDS
Sbjct: 63 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPNQH---------PQISLTNGDS--- 110
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
L G SYLSS+ISLLLRAEPYP +RY+QC+Q NNIMGIDNICELAARLLFS
Sbjct: 111 ---------LGGPHSYLSSFISLLLRAEPYPPSRYAQCVQQNNIMGIDNICELAARLLFS 161
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 162 AVEWARNIPFFPDLQ 176
>gi|348505805|ref|XP_003440451.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 210 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 269
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 270 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 326
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q GQFA LTNGD
Sbjct: 125 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRVPPTQP------HHGQFA-LTNGDP--- 174
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
L+ HS YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 175 ---------LHCHS-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARMLF 224
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 225 SAVEWARNIPFFPDLQ 240
>gi|348505807|ref|XP_003440452.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oreochromis
niloticus]
Length = 423
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 216 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 275
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 276 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 332
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 91/142 (64%), Gaps = 32/142 (22%)
Query: 158 PLNQHYTATISNVPLSSSL-----------STAVQRGRVPPNQSCLPGGLGPGQFAALTN 206
P++QH+ L L + AVQRGRVPP Q GQFA LTN
Sbjct: 125 PIDQHHRNQCQYCRLKKCLKVGMRREVSLFTAAVQRGRVPPTQP------HHGQFA-LTN 177
Query: 207 GDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICEL 265
GD L+ HS YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICEL
Sbjct: 178 GDP------------LHCHS-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICEL 224
Query: 266 AARLLFSAVEWARNIPFFPDLQ 287
AAR+LFSAVEWARNIPFFPDLQ
Sbjct: 225 AARMLFSAVEWARNIPFFPDLQ 246
>gi|432861725|ref|XP_004069707.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Oryzias
latipes]
Length = 417
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 210 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 269
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 270 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 326
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q GQFA LTNGD
Sbjct: 125 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRVPPTQP------HHGQFA-LTNGDP--- 174
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
L+ HS YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 175 ---------LHCHS-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARMLF 224
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 225 SAVEWARNIPFFPDLQ 240
>gi|432861727|ref|XP_004069708.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Oryzias
latipes]
Length = 423
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 216 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 275
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 276 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 332
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 91/142 (64%), Gaps = 32/142 (22%)
Query: 158 PLNQHYTATISNVPLSSSL-----------STAVQRGRVPPNQSCLPGGLGPGQFAALTN 206
P++QH+ L L + AVQRGRVPP Q GQFA LTN
Sbjct: 125 PIDQHHRNQCQYCRLKKCLKVGMRREVSLFTAAVQRGRVPPTQP------HHGQFA-LTN 177
Query: 207 GDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICEL 265
GD L+ HS YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICEL
Sbjct: 178 GDP------------LHCHS-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICEL 224
Query: 266 AARLLFSAVEWARNIPFFPDLQ 287
AAR+LFSAVEWARNIPFFPDLQ
Sbjct: 225 AARMLFSAVEWARNIPFFPDLQ 246
>gi|28630300|gb|AAN73342.1| nuclear receptor subfamily 2 group F [Petromyzon marinus]
Length = 283
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQVALLRLVWSELFVLNA+QC+MPLHV
Sbjct: 122 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLVWSELFVLNAAQCAMPLHV 181
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSC+KAIVLFTT
Sbjct: 182 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTT 238
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/117 (70%), Positives = 87/117 (74%), Gaps = 22/117 (18%)
Query: 174 SSLS--TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSS 231
SSLS AVQRGR+PP+Q P Q+A L NGD LNGHS YLS
Sbjct: 55 SSLSPIAAVQRGRLPPSQH-----PNPAQYA-LVNGDP------------LNGHS-YLSG 95
Query: 232 YISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 96 YISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 152
>gi|161453|gb|AAA30041.1| COUP transcription factor, partial [Strongylocentrotus purpuratus]
Length = 381
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLR+ WSELFVLNASQCSMPLHV
Sbjct: 265 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRMCWSELFVLNASQCSMPLHV 324
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAA+GLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSC+KAIVLFT+
Sbjct: 325 APLLAASGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTS 381
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 79/135 (58%), Gaps = 28/135 (20%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GPGQ+
Sbjct: 184 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRMPPTQP------GPGQYLD--------- 228
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
GH+ +LS YISLLLRAEP PT+RY+ N++MGIDNICELAARLLFS
Sbjct: 229 -------GRFEGHT-FLSGYISLLLRAEPIPTSRYASACMTNSVMGIDNICELAARLLFS 280
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 281 AVEWARNIPFFPDLQ 295
>gi|395511284|ref|XP_003759890.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Sarcophilus harrisii]
Length = 416
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 172 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>gi|346456835|dbj|BAK78983.1| COUP-TF homolog [Lethenteron camtschaticum]
Length = 408
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQVALLRLVWSELFVLNA+QC+MPLHV
Sbjct: 201 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLVWSELFVLNAAQCAMPLHV 260
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSC+KAIVLFTT
Sbjct: 261 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTT 317
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 91/136 (66%), Gaps = 25/136 (18%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP+Q P Q+A L NGD
Sbjct: 115 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRLPPSQH-----PNPAQYA-LVNGDP--- 165
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGHS YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 166 ---------LNGHS-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 215
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 216 SAVEWARNIPFFPDLQ 231
>gi|76364250|gb|ABA41639.1| COUP transcription factor-like protein [Strongylocentrotus
purpuratus]
Length = 336
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLR+ WSELFVLNASQCSMPLHV
Sbjct: 128 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRMCWSELFVLNASQCSMPLHV 187
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAA+GLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSC+KAIVLFT+
Sbjct: 188 APLLAASGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTS 244
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 73/135 (54%), Positives = 84/135 (62%), Gaps = 28/135 (20%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GPGQ+
Sbjct: 47 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRMPPTQP------GPGQYLD--------- 91
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
GH+ +LS YISLLLRAEPYPT+RY+QCMQ N++MGIDNICELAARLLFS
Sbjct: 92 -------GRFEGHT-FLSGYISLLLRAEPYPTSRYAQCMQTNSVMGIDNICELAARLLFS 143
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 144 AVEWARNIPFFPDLQ 158
>gi|334325755|ref|XP_003340678.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 1-A-like [Monodelphis domestica]
Length = 416
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 172 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>gi|410907275|ref|XP_003967117.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Takifugu rubripes]
Length = 423
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 216 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 275
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 276 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 332
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 90/142 (63%), Gaps = 32/142 (22%)
Query: 158 PLNQHYTATISNVPLSSSL-----------STAVQRGRVPPNQSCLPGGLGPGQFAALTN 206
P++QH+ L L + AVQRGRVPP Q GQFA LTN
Sbjct: 125 PIDQHHRNQCQYCRLKKCLKVGMRREVSLFTAAVQRGRVPPTQP------HHGQFA-LTN 177
Query: 207 GDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICEL 265
GD L+ HS YLS YISLLLRAEPYPT+RY SQCMQPN +MGI+NICEL
Sbjct: 178 GDP------------LHCHS-YLSGYISLLLRAEPYPTSRYGSQCMQPNAVMGIENICEL 224
Query: 266 AARLLFSAVEWARNIPFFPDLQ 287
AAR+LFSAVEWARNIPFFPDLQ
Sbjct: 225 AARMLFSAVEWARNIPFFPDLQ 246
>gi|410907273|ref|XP_003967116.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Takifugu rubripes]
Length = 417
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 210 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 269
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 270 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 326
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 89/136 (65%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q GQFA LTNGD
Sbjct: 125 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRVPPTQP------HHGQFA-LTNGDP--- 174
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
L+ HS YLS YISLLLRAEPYPT+RY SQCMQPN +MGI+NICELAAR+LF
Sbjct: 175 ---------LHCHS-YLSGYISLLLRAEPYPTSRYGSQCMQPNAVMGIENICELAARMLF 224
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 225 SAVEWARNIPFFPDLQ 240
>gi|449513880|ref|XP_002189105.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Taeniopygia guttata]
Length = 413
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 204 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 263
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 264 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 320
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 87/131 (66%), Gaps = 22/131 (16%)
Query: 158 PLNQHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAI 217
P++QH+ L L ++R + GL PGQ+A LTNGD
Sbjct: 125 PIDQHHRNQCQYCRLKKCLKVGMRR-------EAIQQGLYPGQYA-LTNGDP-------- 168
Query: 218 AAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEW 276
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLFSAVEW
Sbjct: 169 ----LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEW 223
Query: 277 ARNIPFFPDLQ 287
ARNIPFFPDLQ
Sbjct: 224 ARNIPFFPDLQ 234
>gi|190339066|gb|AAI62484.1| Nr2f2 protein [Danio rerio]
Length = 428
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 221 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 280
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 281 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 337
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 91/142 (64%), Gaps = 32/142 (22%)
Query: 158 PLNQHYTATISNVPLSSSL-----------STAVQRGRVPPNQSCLPGGLGPGQFAALTN 206
P++QH+ L L + AVQRGR+PP Q GQFA LTN
Sbjct: 130 PIDQHHRNQCQYCRLKKCLKVGMRREVSLFTAAVQRGRMPPTQP------HHGQFA-LTN 182
Query: 207 GDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICEL 265
GD L+ HS YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICEL
Sbjct: 183 GDP------------LHCHS-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICEL 229
Query: 266 AARLLFSAVEWARNIPFFPDLQ 287
AAR+LFSAVEWARNIPFFPDLQ
Sbjct: 230 AARMLFSAVEWARNIPFFPDLQ 251
>gi|24111246|ref|NP_571258.1| COUP transcription factor 2 [Danio rerio]
gi|1311663|gb|AAA99309.1| Drosophila seven-up homolog/mammalian ARP-1 homolog [Danio rerio]
Length = 422
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 215 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 274
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 275 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 331
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 130 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------HHGQFA-LTNGDP--- 179
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
L+ HS YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 180 ---------LHCHS-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARMLF 229
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 230 SAVEWARNIPFFPDLQ 245
>gi|390335482|ref|XP_003724162.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
1 [Strongylocentrotus purpuratus]
gi|390335484|ref|XP_782295.3| PREDICTED: nuclear receptor subfamily 2 group F member 1-A isoform
2 [Strongylocentrotus purpuratus]
Length = 472
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLR+ WSELFVLNASQCSMPLHV
Sbjct: 265 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRMCWSELFVLNASQCSMPLHV 324
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAA+GLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSC+KAIVLFT+
Sbjct: 325 APLLAASGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTS 381
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/135 (54%), Positives = 84/135 (62%), Gaps = 28/135 (20%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GPGQ+
Sbjct: 184 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRMPPTQP------GPGQYLD--------- 228
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
GH+ +LS YISLLLRAEPYPT+RY+QCMQ N++MGIDNICELAARLLFS
Sbjct: 229 -------GRFEGHT-FLSGYISLLLRAEPYPTSRYAQCMQTNSVMGIDNICELAARLLFS 280
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 281 AVEWARNIPFFPDLQ 295
>gi|363744735|ref|XP_003643114.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Gallus gallus]
Length = 418
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 209 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 268
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 269 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 325
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 124 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 173
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 174 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 223
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 224 SAVEWARNIPFFPDLQ 239
>gi|538262|gb|AAA21479.1| ovalbumin upstream promoter transcription factor II, partial [Homo
sapiens]
Length = 351
Score = 233 bits (595), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 172 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>gi|44969507|gb|AAS49607.1| nuclear receptor subfamily 2 group F member 1 [Scyliorhinus
canicula]
Length = 273
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 102 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 161
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 162 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 218
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 90/135 (66%), Gaps = 25/135 (18%)
Query: 158 PLNQHYTATISNVPLSS----SLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAA 213
P++QH+ L + VQRGR+PP Q L GQ+A LTNGD
Sbjct: 18 PIDQHHRNQCQYCRLKKCPKVGMRREVQRGRMPPTQPNL------GQYA-LTNGDP---- 66
Query: 214 SAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFS 272
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLFS
Sbjct: 67 --------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFS 117
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 118 AVEWARNIPFFPDLQ 132
>gi|44964649|gb|AAS49525.1| nuclear receptor subfamily 2 group F number 1 [Latimeria chalumnae]
Length = 274
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 103 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 162
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 163 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 219
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 18 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 67
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 68 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 117
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 118 SAVEWARNIPFFPDLQ 133
>gi|44964709|gb|AAS49526.1| nuclear receptor subfamily 2 group F number 1 [Protopterus dolloi]
Length = 273
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/118 (92%), Positives = 116/118 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV LLRL WSELFVLNA+QCSMPLHV
Sbjct: 102 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVVLLRLTWSELFVLNAAQCSMPLHV 161
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALH+DSAEYSCLKAIVLFT+G
Sbjct: 162 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHLDSAEYSCLKAIVLFTSG 219
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 90/135 (66%), Gaps = 25/135 (18%)
Query: 158 PLNQHYTATISNVPLSSSLSTA----VQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAA 213
P++QH+ L L VQRGR+PP Q PGQ+A LTNGD
Sbjct: 18 PIDQHHRNQCQYCRLKKCLKVGMRREVQRGRMPPTQP------NPGQYA-LTNGDP---- 66
Query: 214 SAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFS 272
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLFS
Sbjct: 67 --------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFS 117
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 118 AVEWARNIPFFPDLQ 132
>gi|301785285|ref|XP_002928058.1| PREDICTED: COUP transcription factor 1-like [Ailuropoda
melanoleuca]
Length = 414
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 205 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 264
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 265 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 321
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 120 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 169
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 170 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 219
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 220 SAVEWARNIPFFPDLQ 235
>gi|441616846|ref|XP_004088402.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
Length = 422
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 215 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 274
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 275 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 331
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 90/144 (62%), Gaps = 34/144 (23%)
Query: 158 PLNQHYTATISNVPLSSSLST-------------AVQRGRVPPNQSCLPGGLGPGQFAAL 204
P++QH+ L L AVQRGR+PP Q GQFA L
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREVCLFSSPAAVQRGRMPPTQP------THGQFA-L 174
Query: 205 TNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNIC 263
TNGD LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NIC
Sbjct: 175 TNGDP------------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENIC 221
Query: 264 ELAARLLFSAVEWARNIPFFPDLQ 287
ELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 222 ELAARMLFSAVEWARNIPFFPDLQ 245
>gi|395825625|ref|XP_003786025.1| PREDICTED: COUP transcription factor 1 [Otolemur garnettii]
Length = 267
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 64 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 123
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 124 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 180
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/110 (70%), Positives = 83/110 (75%), Gaps = 21/110 (19%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
+VQRGR+PP Q PGQ+A LTNGD LNGH YLS YISLLLR
Sbjct: 5 SVQRGRMPPTQP------NPGQYA-LTNGDP------------LNGHC-YLSGYISLLLR 44
Query: 239 AEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYPT+RY SQCMQPNNIMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 45 AEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 94
>gi|482928|emb|CAA54096.1| ARP-1 [Mus musculus]
Length = 414
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 172 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>gi|27806025|ref|NP_776827.1| COUP transcription factor 2 [Bos taurus]
gi|10719969|sp|Q9TTR7.1|COT2_BOVIN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|5870338|emb|CAB55624.1| COUP-TFII transcription factor [Bos taurus]
gi|115305372|gb|AAI23678.1| Nuclear receptor subfamily 2, group F, member 2 [Bos taurus]
gi|296475581|tpg|DAA17696.1| TPA: COUP transcription factor 2 [Bos taurus]
Length = 414
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------SHGQFA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 172 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>gi|431891667|gb|ELK02268.1| COUP transcription factor 2, partial [Pteropus alecto]
gi|432091002|gb|ELK24218.1| COUP transcription factor 2, partial [Myotis davidii]
Length = 343
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 136 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 195
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 196 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 252
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 51 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 100
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAARLLF
Sbjct: 101 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARLLF 150
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 151 SAVEWARNIPFFPDLQ 166
>gi|60654339|gb|AAX29860.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
Length = 415
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 172 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>gi|14149746|ref|NP_066285.1| COUP transcription factor 2 isoform a [Homo sapiens]
gi|45598394|ref|NP_033827.2| COUP transcription factor 2 isoform 1 [Mus musculus]
gi|109082429|ref|XP_001099957.1| PREDICTED: COUP transcription factor 2 isoform 4 [Macaca mulatta]
gi|114659046|ref|XP_001135545.1| PREDICTED: COUP transcription factor 2 isoform 4 [Pan troglodytes]
gi|296203984|ref|XP_002749136.1| PREDICTED: COUP transcription factor 2 [Callithrix jacchus]
gi|332238780|ref|XP_003268580.1| PREDICTED: COUP transcription factor 2 isoform 2 [Nomascus
leucogenys]
gi|395831197|ref|XP_003788693.1| PREDICTED: COUP transcription factor 2 [Otolemur garnettii]
gi|402875344|ref|XP_003901468.1| PREDICTED: COUP transcription factor 2 [Papio anubis]
gi|426380391|ref|XP_004056850.1| PREDICTED: COUP transcription factor 2 [Gorilla gorilla gorilla]
gi|114203|sp|P24468.1|COT2_HUMAN RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|46397833|sp|P43135.2|COT2_MOUSE RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein AI regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=Nuclear receptor
subfamily 2 group F member 2
gi|2137150|pir||I48975 apolipoprotein A-I regulatory protein 1 - mouse
gi|179024|gb|AAA86429.1| apolipoprotein AI regulatory protein-1 [Homo sapiens]
gi|466470|gb|AAA19854.1| COUP-TFII [Mus musculus]
gi|1575343|gb|AAB09475.1| apoliprotein AI regulatory protein-1 [Homo sapiens]
gi|15779213|gb|AAH14664.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|27503725|gb|AAH42484.1| Nuclear receptor subfamily 2, group F, member 2 [Mus musculus]
gi|27781285|gb|AAH42897.1| Nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|61363669|gb|AAX42426.1| nuclear receptor subfamily 2 group F member 2 [synthetic construct]
gi|74148522|dbj|BAE24245.1| unnamed protein product [Mus musculus]
gi|119622600|gb|EAX02195.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|119622603|gb|EAX02198.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Homo sapiens]
gi|216409730|dbj|BAH02302.1| ovalbumin upstream promoter transcription factor II [Homo sapiens]
gi|307685477|dbj|BAJ20669.1| nuclear receptor subfamily 2, group F, member 2 [synthetic
construct]
gi|325495507|gb|ADZ17359.1| chicken ovalbumin upstream promoter-transcription factor II variant
1 [Homo sapiens]
gi|410216134|gb|JAA05286.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216138|gb|JAA05288.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410216140|gb|JAA05289.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258704|gb|JAA17319.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307120|gb|JAA32160.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307122|gb|JAA32161.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307126|gb|JAA32163.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336357|gb|JAA37125.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410336359|gb|JAA37126.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 414
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 172 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>gi|395747169|ref|XP_003778564.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2 [Pongo
abelii]
Length = 414
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 172 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>gi|298228993|ref|NP_001177181.1| COUP transcription factor 2 isoform 1 [Sus scrofa]
gi|344284391|ref|XP_003413951.1| PREDICTED: COUP transcription factor 2 isoform 1 [Loxodonta
africana]
gi|345798235|ref|XP_849497.2| PREDICTED: COUP transcription factor 2 isoform 2 [Canis lupus
familiaris]
gi|348579089|ref|XP_003475314.1| PREDICTED: COUP transcription factor 2 [Cavia porcellus]
Length = 414
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 172 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>gi|18158445|ref|NP_542956.1| COUP transcription factor 2 [Rattus norvegicus]
gi|3913096|sp|O09018.1|COT2_RAT RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=Apolipoprotein A-I regulatory protein 1;
Short=ARP-1; AltName: Full=COUP transcription factor II;
Short=COUP-TF II; AltName: Full=COUPb; AltName:
Full=Nuclear receptor subfamily 2 group F member 2;
AltName: Full=Ovalbumin upstream promoter beta nuclear
receptor
gi|2197125|gb|AAB61297.1| ovalbumin upstream promoter beta nuclear receptor rCOUPb [Rattus
norvegicus]
gi|149057164|gb|EDM08487.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 414
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 172 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>gi|154147672|ref|NP_001093677.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus (Silurana)
tropicalis]
gi|138519913|gb|AAI35590.1| nr2f1 protein [Xenopus (Silurana) tropicalis]
Length = 410
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 201 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 260
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 261 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 317
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 90/135 (66%), Gaps = 25/135 (18%)
Query: 158 PLNQHYTATISNVPLSSSLSTA----VQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAA 213
P++QH+ L L VQRGR+PP Q PGQ+A LTNGD
Sbjct: 117 PIDQHHRNQCQYCRLKKCLKVGMRREVQRGRMPPTQP------NPGQYA-LTNGDP---- 165
Query: 214 SAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFS 272
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLFS
Sbjct: 166 --------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFS 216
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 217 AVEWARNIPFFPDLQ 231
>gi|410049651|ref|XP_003952785.1| PREDICTED: COUP transcription factor 2 [Pan troglodytes]
Length = 421
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 214 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 273
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 274 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 330
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 85/117 (72%), Gaps = 21/117 (17%)
Query: 172 LSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSS 231
+S L AVQRGR+PP Q GQFA LTNGD LN HS YLS
Sbjct: 148 VSPFLPAAVQRGRMPPTQP------THGQFA-LTNGDP------------LNCHS-YLSG 187
Query: 232 YISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 188 YISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 244
>gi|209156457|pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 233 bits (594), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 37 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 96
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 97 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 153
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/68 (86%), Positives = 63/68 (92%), Gaps = 2/68 (2%)
Query: 221 GLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARN 279
G N HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LFSAVEWARN
Sbjct: 1 GSNSHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARN 59
Query: 280 IPFFPDLQ 287
IPFFPDLQ
Sbjct: 60 IPFFPDLQ 67
>gi|380796215|gb|AFE69983.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 174 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 233
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 234 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 290
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 89 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTH------GQFA-LTNGDP--- 138
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 139 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 188
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 189 SAVEWARNIPFFPDLQ 204
>gi|444730350|gb|ELW70737.1| COUP transcription factor 2 [Tupaia chinensis]
Length = 413
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 206 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 265
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 266 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 322
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 121 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 170
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 171 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 220
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 221 SAVEWARNIPFFPDLQ 236
>gi|327283177|ref|XP_003226318.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Anolis carolinensis]
Length = 359
Score = 233 bits (593), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 152 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 211
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 212 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 268
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 86/117 (73%), Gaps = 21/117 (17%)
Query: 172 LSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSS 231
+SS + AVQRGR+PP Q GQFA LTNGD LN HS YLS
Sbjct: 86 VSSFFTAAVQRGRMPPTQPTH------GQFA-LTNGDP------------LNCHS-YLSG 125
Query: 232 YISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 126 YISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 182
>gi|380800545|gb|AFE72148.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 383
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 174 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 233
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 234 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 290
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 89 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 138
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 139 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 188
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 189 SAVEWARNIPFFPDLQ 204
>gi|355693023|gb|EHH27626.1| COUP transcription factor 2, partial [Macaca mulatta]
Length = 380
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 173 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 232
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 233 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 289
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 88 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 137
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 138 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 187
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 188 SAVEWARNIPFFPDLQ 203
>gi|301777570|ref|XP_002924203.1| PREDICTED: COUP transcription factor 2-like [Ailuropoda
melanoleuca]
Length = 383
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 176 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 235
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 236 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 292
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 91 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 140
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 141 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 190
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 191 SAVEWARNIPFFPDLQ 206
>gi|148705178|gb|EDL37125.1| nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 416
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 172 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>gi|297294717|ref|XP_001089115.2| PREDICTED: COUP transcription factor 1 [Macaca mulatta]
Length = 560
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 351 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 410
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 411 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 467
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 266 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 315
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 316 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 365
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 366 SAVEWARNIPFFPDLQ 381
>gi|417409902|gb|JAA51440.1| Putative coup transcription factor 2 isoform 1, partial [Desmodus
rotundus]
Length = 346
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 139 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 198
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 199 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 255
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 54 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 103
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 104 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 153
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 154 SAVEWARNIPFFPDLQ 169
>gi|281347624|gb|EFB23208.1| hypothetical protein PANDA_013481 [Ailuropoda melanoleuca]
Length = 357
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 150 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 209
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 210 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 266
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 65 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 114
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 115 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 164
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 165 SAVEWARNIPFFPDLQ 180
>gi|395736005|ref|XP_002815781.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Pongo
abelii]
Length = 422
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 214 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 273
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 274 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 330
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 129 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 178
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 179 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 228
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 229 SAVEWARNIPFFPDLQ 244
>gi|444519103|gb|ELV12583.1| COUP transcription factor 1 [Tupaia chinensis]
Length = 216
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/118 (92%), Positives = 116/118 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 7 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 66
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 67 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSD 124
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/37 (97%), Positives = 37/37 (100%)
Query: 251 MQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
MQPNNIMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 1 MQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 37
>gi|166796001|ref|NP_001107703.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus (Silurana)
tropicalis]
gi|163916021|gb|AAI57200.1| nr2f2 protein [Xenopus (Silurana) tropicalis]
Length = 408
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 201 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 260
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 261 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 317
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 116 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTH------GQFA-LTNGDP--- 165
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 166 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 215
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 216 SAVEWARNIPFFPDLQ 231
>gi|148234557|ref|NP_001087950.1| Nr2f2 protein [Xenopus laevis]
gi|50416274|gb|AAH78057.1| Nr2f2 protein [Xenopus laevis]
Length = 404
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 110/116 (94%), Positives = 115/116 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 195 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 254
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT
Sbjct: 255 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFT 310
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 89/135 (65%), Gaps = 25/135 (18%)
Query: 158 PLNQHYTATISNVPLSSSLSTA----VQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAA 213
P++QH+ L VQRGR+PP Q PGQ+A LTNGD
Sbjct: 111 PIDQHHRNQCQYCRFKKCLKVGMRREVQRGRMPPTQP------NPGQYA-LTNGDP---- 159
Query: 214 SAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFS 272
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLFS
Sbjct: 160 --------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFS 210
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 211 AVEWARNIPFFPDLQ 225
>gi|395502499|ref|XP_003755617.1| PREDICTED: COUP transcription factor 2 isoform 3 [Sarcophilus
harrisii]
Length = 418
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 211 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 270
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 271 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 327
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 86/117 (73%), Gaps = 21/117 (17%)
Query: 172 LSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSS 231
+SS + AVQRGR+PP Q GQFA LTNGD LN HS YLS
Sbjct: 145 VSSLFTAAVQRGRMPPTQPTH------GQFA-LTNGDP------------LNCHS-YLSG 184
Query: 232 YISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 185 YISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 241
>gi|440909469|gb|ELR59375.1| COUP transcription factor 2, partial [Bos grunniens mutus]
Length = 348
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 141 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 200
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 201 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 257
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 56 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPPQP------SHGQFA-LTNGDP--- 105
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 106 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 155
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 156 SAVEWARNIPFFPDLQ 171
>gi|354499555|ref|XP_003511874.1| PREDICTED: COUP transcription factor 1-like [Cricetulus griseus]
Length = 295
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 86 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 145
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 146 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 202
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 85/113 (75%), Gaps = 21/113 (18%)
Query: 176 LSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISL 235
++ AVQRGR+PP Q PGQ+A LTNGD LNGH YLS YISL
Sbjct: 24 IALAVQRGRMPPTQP------NPGQYA-LTNGDP------------LNGHC-YLSGYISL 63
Query: 236 LLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
LLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 64 LLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 116
>gi|32454395|gb|AAP82999.1| ovalbumin upstream promoter transcription factor II [Bos taurus]
Length = 339
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 132 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 191
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 192 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 248
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 47 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------SHGQFA-LTNGDP--- 96
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 97 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 146
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 147 SAVEWARNIPFFPDLQ 162
>gi|147900283|ref|NP_001083835.1| nuclear receptor subfamily 2, group F, member 1 [Xenopus laevis]
gi|5353742|gb|AAD42224.1|AF157558_1 COUP transcription factor 1 [Xenopus laevis]
gi|213623636|gb|AAI70009.1| COUP transcription factor 1 [Xenopus laevis]
gi|213626739|gb|AAI70011.1| COUP transcription factor 1 [Xenopus laevis]
Length = 411
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 202 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 261
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSC+KAIVLFT+
Sbjct: 262 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTS 318
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 117 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 166
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 167 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 216
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 217 SAVEWARNIPFFPDLQ 232
>gi|351697339|gb|EHB00258.1| COUP transcription factor 2 [Heterocephalus glaber]
Length = 271
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 64 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 123
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 124 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 180
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 82/110 (74%), Gaps = 21/110 (19%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP Q GQFA LTNGD LN HS YLS YISLLLR
Sbjct: 5 AVQRGRMPPTQPT------HGQFA-LTNGDP------------LNCHS-YLSGYISLLLR 44
Query: 239 AEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 45 AEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 94
>gi|281346029|gb|EFB21613.1| hypothetical protein PANDA_017952 [Ailuropoda melanoleuca]
Length = 358
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 149 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 208
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 209 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 265
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 64 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 113
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 114 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 163
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 164 SAVEWARNIPFFPDLQ 179
>gi|397491841|ref|XP_003816848.1| PREDICTED: COUP transcription factor 2 [Pan paniscus]
Length = 367
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 188 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 247
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 248 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 304
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 103 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 152
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 153 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 202
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 203 SAVEWARNIPFFPDLQ 218
>gi|426231150|ref|XP_004023618.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 [Ovis
aries]
Length = 457
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 248 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 307
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 308 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 364
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/145 (57%), Positives = 91/145 (62%), Gaps = 35/145 (24%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 154 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 203
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEP---------YPTARY-SQCMQPNNIMGIDNI 262
LNGH YLS YISLLLRAEP YPT+RY SQCMQPNNIMGI+NI
Sbjct: 204 ---------LNGHC-YLSGYISLLLRAEPTPRLLRAGPYPTSRYGSQCMQPNNIMGIENI 253
Query: 263 CELAARLLFSAVEWARNIPFFPDLQ 287
CELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 254 CELAARLLFSAVEWARNIPFFPDLQ 278
>gi|355691480|gb|EHH26665.1| COUP transcription factor 1, partial [Macaca mulatta]
Length = 270
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 61 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 120
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 121 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 177
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 84/111 (75%), Gaps = 21/111 (18%)
Query: 178 TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLL 237
+AVQRGR+PP Q PGQ+A LTNGD LNGH YLS YISLLL
Sbjct: 1 SAVQRGRMPPTQP------NPGQYA-LTNGDP------------LNGHC-YLSGYISLLL 40
Query: 238 RAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
RAEPYPT+RY SQCMQPNNIMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 41 RAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 91
>gi|149410809|ref|XP_001508281.1| PREDICTED: COUP transcription factor 2 [Ornithorhynchus anatinus]
Length = 411
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 204 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 263
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 264 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 320
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 119 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTH------GQFA-LTNGDP--- 168
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 169 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 218
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 219 SAVEWARNIPFFPDLQ 234
>gi|345798599|ref|XP_848884.2| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1 isoform
2 [Canis lupus familiaris]
Length = 423
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 214 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 273
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 274 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 330
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 129 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 178
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 179 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 228
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 229 SAVEWARNIPFFPDLQ 244
>gi|334318448|ref|XP_003340091.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 2-like
[Monodelphis domestica]
gi|395502495|ref|XP_003755615.1| PREDICTED: COUP transcription factor 2 isoform 1 [Sarcophilus
harrisii]
Length = 411
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 204 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 263
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 264 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 320
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 119 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTH------GQFA-LTNGDP--- 168
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 169 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 218
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 219 SAVEWARNIPFFPDLQ 234
>gi|355778322|gb|EHH63358.1| COUP transcription factor 2, partial [Macaca fascicularis]
Length = 352
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 145 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 204
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 205 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 261
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 60 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 109
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 110 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 159
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 160 SAVEWARNIPFFPDLQ 175
>gi|2500905|sp|Q60632.2|COT1_MOUSE RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|695627|emb|CAA52231.1| COUP-TF1 [Mus musculus]
Length = 422
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 213 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 272
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 273 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 329
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 128 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 177
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 178 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 227
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 228 SAVEWARNIPFFPDLQ 243
>gi|223555951|ref|NP_001138628.1| COUP transcription factor 2 isoform c [Homo sapiens]
gi|223555953|ref|NP_001138629.1| COUP transcription factor 2 isoform c [Homo sapiens]
gi|73951115|ref|XP_858826.1| PREDICTED: COUP transcription factor 2 isoform 4 [Canis lupus
familiaris]
gi|114659052|ref|XP_001135366.1| PREDICTED: COUP transcription factor 2 isoform 2 [Pan troglodytes]
gi|332238782|ref|XP_003268581.1| PREDICTED: COUP transcription factor 2 isoform 3 [Nomascus
leucogenys]
gi|338717601|ref|XP_003363657.1| PREDICTED: COUP transcription factor 2-like isoform 2 [Equus
caballus]
gi|403258148|ref|XP_003921639.1| PREDICTED: COUP transcription factor 2 isoform 2 [Saimiri
boliviensis boliviensis]
gi|403258150|ref|XP_003921640.1| PREDICTED: COUP transcription factor 2 isoform 3 [Saimiri
boliviensis boliviensis]
gi|410960650|ref|XP_003986902.1| PREDICTED: COUP transcription factor 2 isoform 2 [Felis catus]
gi|410960652|ref|XP_003986903.1| PREDICTED: COUP transcription factor 2 isoform 3 [Felis catus]
gi|441616841|ref|XP_004088401.1| PREDICTED: COUP transcription factor 2 [Nomascus leucogenys]
gi|119622602|gb|EAX02197.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_c
[Homo sapiens]
gi|148675208|gb|EDL07155.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a [Mus
musculus]
gi|148675209|gb|EDL07156.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_a [Mus
musculus]
gi|194385096|dbj|BAG60954.1| unnamed protein product [Homo sapiens]
gi|221045560|dbj|BAH14457.1| unnamed protein product [Homo sapiens]
gi|325495511|gb|ADZ17361.1| chicken ovalbumin upstream promoter-transcription factor II variant
3 [Homo sapiens]
gi|344238582|gb|EGV94685.1| COUP transcription factor 2 [Cricetulus griseus]
Length = 261
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 54 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 113
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 114 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 170
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 72/90 (80%), Gaps = 15/90 (16%)
Query: 199 GQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIM 257
GQFA LTNGD LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIM
Sbjct: 9 GQFA-LTNGDP------------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIM 54
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQ 287
GI+NICELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 55 GIENICELAARMLFSAVEWARNIPFFPDLQ 84
>gi|30140|emb|CAA34277.1| COUP-TF [Homo sapiens]
gi|226405|prf||1510304A COUP transcription factor
Length = 418
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 209 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 268
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 269 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 325
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 124 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 173
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 174 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 223
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 224 SAVEWARNIPFFPDLQ 239
>gi|431907899|gb|ELK11506.1| COUP transcription factor 1 [Pteropus alecto]
Length = 263
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 54 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 113
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 114 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 170
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/92 (76%), Positives = 73/92 (79%), Gaps = 15/92 (16%)
Query: 197 GPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNN 255
PGQ+A LTNGD LNGH YLS YISLLLRAEPYPT+RY SQCMQPNN
Sbjct: 7 NPGQYA-LTNGDP------------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNN 52
Query: 256 IMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
IMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 53 IMGIENICELAARLLFSAVEWARNIPFFPDLQ 84
>gi|325495569|gb|ADZ17390.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 398
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 189 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 248
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 249 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 305
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 104 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 153
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 154 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 203
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 204 SAVEWARNIPFFPDLQ 219
>gi|259013249|ref|NP_001158369.1| transcription factor COUP1 [Saccoglossus kowalevskii]
gi|196123801|gb|ACG70189.1| COUP protein [Saccoglossus kowalevskii]
Length = 435
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 110/117 (94%), Positives = 115/117 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGID ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLR+VWSELFVLNASQCSMPLHV
Sbjct: 228 MGIDGICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRMVWSELFVLNASQCSMPLHV 287
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAA+GLH SPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 288 APLLAASGLHTSPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 344
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/136 (55%), Positives = 88/136 (64%), Gaps = 28/136 (20%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LT+G
Sbjct: 145 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRIPPTQPV------PGQYA-LTDGR---- 193
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
+GHS YLS +ISLLLRAEPYPT+RY +QCMQ +N+MGID ICELAARLLF
Sbjct: 194 ---------FDGHS-YLSGFISLLLRAEPYPTSRYGAQCMQ-SNMMGIDGICELAARLLF 242
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 243 SAVEWARNIPFFPDLQ 258
>gi|325495563|gb|ADZ17387.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 397
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 188 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 247
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 248 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 304
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 90/135 (66%), Gaps = 25/135 (18%)
Query: 158 PLNQHYTATISNVPLSSSLSTA----VQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAA 213
P++QH+ L L VQRGR+PP Q PGQ+A LTNGD
Sbjct: 104 PIDQHHRNQCQYCRLKKCLKVGMRREVQRGRMPPTQP------NPGQYA-LTNGDP---- 152
Query: 214 SAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFS 272
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLFS
Sbjct: 153 --------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFS 203
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 204 AVEWARNIPFFPDLQ 218
>gi|296485043|tpg|DAA27158.1| TPA: COUP transcription factor 1 [Bos taurus]
Length = 352
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 215 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 274
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 275 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 331
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 130 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 179
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 180 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 229
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 230 SAVEWARNIPFFPDLQ 245
>gi|73611910|ref|NP_899084.2| COUP transcription factor 2 isoform 2 [Mus musculus]
gi|223555949|ref|NP_001138627.1| COUP transcription factor 2 isoform b [Homo sapiens]
gi|298228995|ref|NP_001177182.1| COUP transcription factor 2 isoform 2 [Sus scrofa]
gi|73951111|ref|XP_536178.2| PREDICTED: COUP transcription factor 2 isoform 1 [Canis lupus
familiaris]
gi|291409135|ref|XP_002720865.1| PREDICTED: nuclear receptor subfamily 2, group F, member 2-like
[Oryctolagus cuniculus]
gi|332238778|ref|XP_003268579.1| PREDICTED: COUP transcription factor 2 isoform 1 [Nomascus
leucogenys]
gi|338717599|ref|XP_003363656.1| PREDICTED: COUP transcription factor 2-like isoform 1 [Equus
caballus]
gi|344284393|ref|XP_003413952.1| PREDICTED: COUP transcription factor 2 isoform 2 [Loxodonta
africana]
gi|354465707|ref|XP_003495319.1| PREDICTED: COUP transcription factor 2-like [Cricetulus griseus]
gi|395502497|ref|XP_003755616.1| PREDICTED: COUP transcription factor 2 isoform 2 [Sarcophilus
harrisii]
gi|403258146|ref|XP_003921638.1| PREDICTED: COUP transcription factor 2 isoform 1 [Saimiri
boliviensis boliviensis]
gi|410960648|ref|XP_003986901.1| PREDICTED: COUP transcription factor 2 isoform 1 [Felis catus]
gi|76780223|gb|AAI06084.1| NR2F2 protein [Homo sapiens]
gi|119622601|gb|EAX02196.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_b
[Homo sapiens]
gi|149057165|gb|EDM08488.1| nuclear receptor subfamily 2, group F, member 2, isoform CRA_b
[Rattus norvegicus]
gi|194295609|gb|ACF40832.1| orphan nuclear receptor COUP-TFII [Sus scrofa]
gi|194377044|dbj|BAG63083.1| unnamed protein product [Homo sapiens]
gi|283482326|emb|CAR63888.1| nuclear receptor subfamily 2, group F, member 2 [Homo sapiens]
gi|325495509|gb|ADZ17360.1| chicken ovalbumin upstream promoter-transcription factor II variant
2 [Homo sapiens]
gi|384949090|gb|AFI38150.1| COUP transcription factor 2 isoform b [Macaca mulatta]
gi|387542112|gb|AFJ71683.1| COUP transcription factor 2 isoform b [Macaca mulatta]
gi|410216136|gb|JAA05287.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410258702|gb|JAA17318.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
gi|410307124|gb|JAA32162.1| nuclear receptor subfamily 2, group F, member 2 [Pan troglodytes]
Length = 281
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 74 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 133
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 134 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 190
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 82/110 (74%), Gaps = 21/110 (19%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP Q GQFA LTNGD LN HS YLS YISLLLR
Sbjct: 15 AVQRGRMPPTQPT------HGQFA-LTNGDP------------LNCHS-YLSGYISLLLR 54
Query: 239 AEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 55 AEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 104
>gi|147901133|ref|NP_001080488.1| nuclear receptor subfamily 2, group F, member 2 [Xenopus laevis]
gi|27924187|gb|AAH44975.1| Nr2f2 protein [Xenopus laevis]
Length = 405
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 198 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 257
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 258 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 314
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 113 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTH------GQFA-LTNGDP--- 162
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 163 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 212
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 213 SAVEWARNIPFFPDLQ 228
>gi|335283225|ref|XP_003354261.1| PREDICTED: COUP transcription factor 1-like isoform 1 [Sus scrofa]
Length = 422
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 213 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 272
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 273 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 329
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 128 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 177
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 178 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 227
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 228 SAVEWARNIPFFPDLQ 243
>gi|5032173|ref|NP_005645.1| COUP transcription factor 1 [Homo sapiens]
gi|332821062|ref|XP_517657.3| PREDICTED: COUP transcription factor 1 [Pan troglodytes]
gi|402872088|ref|XP_003899969.1| PREDICTED: COUP transcription factor 1 [Papio anubis]
gi|116959|sp|P10589.1|COT1_HUMAN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1; AltName: Full=V-erbA-related protein 3;
Short=EAR-3
gi|31067|emb|CAA31283.1| unnamed protein product [Homo sapiens]
gi|13278759|gb|AAH04154.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|52790443|gb|AAH17493.1| Nuclear receptor subfamily 2, group F, member 1 [Homo sapiens]
gi|119616415|gb|EAW96009.1| nuclear receptor subfamily 2, group F, member 1, isoform CRA_b
[Homo sapiens]
gi|208966886|dbj|BAG73457.1| nuclear receptor subfamily 2, group F, member 1 [synthetic
construct]
gi|387542998|gb|AFJ72126.1| COUP transcription factor 1 [Macaca mulatta]
Length = 423
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 214 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 273
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 274 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 330
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 129 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 178
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 179 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 228
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 229 SAVEWARNIPFFPDLQ 244
>gi|28461227|ref|NP_786998.1| COUP transcription factor 1 [Bos taurus]
gi|10719970|sp|Q9TTR8.1|COT1_BOVIN RecName: Full=COUP transcription factor 1; Short=COUP-TF1; AltName:
Full=COUP transcription factor I; Short=COUP-TF I;
AltName: Full=Nuclear receptor subfamily 2 group F
member 1
gi|5870336|emb|CAB55623.1| transcription factor, COUP-TFI [Bos taurus]
Length = 424
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 215 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 274
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 275 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 331
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 130 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 179
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 180 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 229
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 230 SAVEWARNIPFFPDLQ 245
>gi|335283229|ref|XP_003354263.1| PREDICTED: COUP transcription factor 1-like isoform 3 [Sus scrofa]
gi|344253194|gb|EGW09298.1| COUP transcription factor 1 [Cricetulus griseus]
Length = 263
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 54 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 113
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 114 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 170
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/104 (70%), Positives = 77/104 (74%), Gaps = 21/104 (20%)
Query: 185 VPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPT 244
+PP Q PGQ+A LTNGD LNGH YLS YISLLLRAEPYPT
Sbjct: 1 MPPTQP------NPGQYA-LTNGDP------------LNGHC-YLSGYISLLLRAEPYPT 40
Query: 245 ARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
+RY SQCMQPNNIMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 41 SRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 84
>gi|335283227|ref|XP_003354262.1| PREDICTED: COUP transcription factor 1-like isoform 2 [Sus scrofa]
gi|426349454|ref|XP_004042315.1| PREDICTED: COUP transcription factor 1 [Gorilla gorilla gorilla]
gi|151554252|gb|AAI49439.1| NR2F1 protein [Bos taurus]
Length = 273
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 64 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 123
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 124 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 180
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/110 (70%), Positives = 83/110 (75%), Gaps = 21/110 (19%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
+VQRGR+PP Q PGQ+A LTNGD LNGH YLS YISLLLR
Sbjct: 5 SVQRGRMPPTQP------NPGQYA-LTNGDP------------LNGHC-YLSGYISLLLR 44
Query: 239 AEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYPT+RY SQCMQPNNIMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 45 AEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 94
>gi|242247451|ref|NP_001156015.1| COUP transcription factor 2 [Ovis aries]
gi|134024805|gb|AAI34736.1| NR2F2 protein [Bos taurus]
gi|238799806|gb|ACR55775.1| nuclear receptor subfamily 2 group F member 2 [Ovis aries]
Length = 281
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 74 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 133
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 134 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 190
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 82/110 (74%), Gaps = 21/110 (19%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP Q GQFA LTNGD LN HS YLS YISLLLR
Sbjct: 15 AVQRGRMPPTQP------SHGQFA-LTNGDP------------LNCHS-YLSGYISLLLR 54
Query: 239 AEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 55 AEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 104
>gi|111185902|ref|NP_034281.2| COUP transcription factor 1 [Mus musculus]
gi|466468|gb|AAA19853.1| COUP-TFI [Mus musculus]
gi|80478748|gb|AAI08409.1| Nuclear receptor subfamily 2, group F, member 1 [Mus musculus]
Length = 420
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 211 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 270
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 271 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 327
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 126 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 175
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 176 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 225
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 226 SAVEWARNIPFFPDLQ 241
>gi|197129927|gb|ACH46425.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 410
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 203 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 262
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 263 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 319
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 118 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTH------GQFA-LTNGDP--- 167
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 168 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 217
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 218 SAVEWARNIPFFPDLQ 233
>gi|310703613|ref|NP_001185508.1| COUP transcription factor 2 [Taeniopygia guttata]
Length = 410
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 203 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 262
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 263 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 319
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 118 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTH------GQFA-LTNGDP--- 167
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 168 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 217
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 218 SAVEWARNIPFFPDLQ 233
>gi|45383323|ref|NP_989752.1| COUP transcription factor 2 [Gallus gallus]
gi|3913114|sp|Q90733.1|COT2_CHICK RecName: Full=COUP transcription factor 2; Short=COUP-TF2; AltName:
Full=COUP transcription factor II; Short=COUP-TF II;
AltName: Full=Nuclear receptor subfamily 2 group F
member 2
gi|392817|gb|AAA17733.1| orphan receptor COUP-TFII [Gallus gallus]
Length = 410
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 203 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 262
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 263 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 319
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 118 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 167
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 168 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 217
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 218 SAVEWARNIPFFPDLQ 233
>gi|20589472|ref|NP_571255.1| nuclear receptor subfamily 2 group F member 1-A [Danio rerio]
gi|6094377|sp|Q06725.1|N2F1A_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-A;
AltName: Full=COUP transcription factor 1-A;
Short=COUP-TFalpha-A; Short=zCOUP-TFI; AltName:
Full=Seven-up related 44; Short=Svp[44]; Short=zSvp[44];
AltName: Full=Steroid receptor homolog SVP 44
gi|296419|emb|CAA49780.1| svp 44 [Danio rerio]
gi|45219746|gb|AAH66671.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 411
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/117 (92%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 204 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 263
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSC+KAIVLFT+
Sbjct: 264 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTS 320
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 119 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 168
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 169 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 218
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 219 SAVEWARNIPFFPDLQ 234
>gi|332224991|ref|XP_003261656.1| PREDICTED: LOW QUALITY PROTEIN: COUP transcription factor 1
[Nomascus leucogenys]
Length = 423
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 214 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 273
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 274 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 330
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 129 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 178
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 179 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 228
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 229 SAVEWARNIPFFPDLQ 244
>gi|325495565|gb|ADZ17388.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 372
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 163 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 222
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 223 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 279
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 78 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 127
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 128 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 177
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 178 SAVEWARNIPFFPDLQ 193
>gi|34194058|gb|AAH56574.1| Nuclear receptor subfamily 2, group F, member 1a [Danio rerio]
Length = 410
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/117 (92%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 203 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 262
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSC+KAIVLFT+
Sbjct: 263 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTS 319
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 90/135 (66%), Gaps = 25/135 (18%)
Query: 158 PLNQHYTATISNVPLSSSLSTA----VQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAA 213
P++QH+ L L VQRGR+PP Q PGQ+A LTNGD
Sbjct: 119 PIDQHHRNQCQYCRLKKCLKVGMRREVQRGRMPPTQP------NPGQYA-LTNGDP---- 167
Query: 214 SAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFS 272
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLFS
Sbjct: 168 --------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFS 218
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 219 AVEWARNIPFFPDLQ 233
>gi|325495567|gb|ADZ17389.1| chicken ovalbumin upstream promoter-transcription factor I [Homo
sapiens]
Length = 382
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 173 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 232
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 233 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 289
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 88 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 137
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 138 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 187
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 188 SAVEWARNIPFFPDLQ 203
>gi|426248035|ref|XP_004017771.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 1 [Ovis aries]
gi|426248039|ref|XP_004017773.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 3 [Ovis aries]
gi|426248041|ref|XP_004017774.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 4 [Ovis aries]
gi|426248043|ref|XP_004017775.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 5 [Ovis aries]
Length = 261
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 54 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 113
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 114 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 170
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/104 (66%), Positives = 75/104 (72%), Gaps = 21/104 (20%)
Query: 185 VPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPT 244
+PP Q PGQ+A NGD LNGH YLS YISLLLRAEPYPT
Sbjct: 1 MPPTQP------NPGQYAH-PNGDP------------LNGHC-YLSGYISLLLRAEPYPT 40
Query: 245 ARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
+R+ SQCMQPNNIMGI+NICELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 41 SRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 84
>gi|432875136|ref|XP_004072692.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like,
partial [Oryzias latipes]
Length = 330
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/128 (87%), Positives = 121/128 (94%), Gaps = 1/128 (0%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 108 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 167
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK- 119
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLK LHVDSAEYSCLKAIVLFT+
Sbjct: 168 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFTSAMG 227
Query: 120 RIFTGVLL 127
+ +GVLL
Sbjct: 228 AVASGVLL 235
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 23 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 72
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 73 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 122
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 123 SAVEWARNIPFFPDLQ 138
>gi|426248037|ref|XP_004017772.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
isoform 2 [Ovis aries]
Length = 281
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 74 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 133
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 134 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 190
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/110 (68%), Positives = 81/110 (73%), Gaps = 21/110 (19%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP Q PGQ+A NGD LNGH YLS YISLLLR
Sbjct: 15 AVQRGRMPPTQP------NPGQYAH-PNGDP------------LNGHC-YLSGYISLLLR 54
Query: 239 AEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 55 AEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 104
>gi|74223617|dbj|BAE28687.1| unnamed protein product [Mus musculus]
Length = 337
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 54 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 113
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 114 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 170
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/104 (70%), Positives = 77/104 (74%), Gaps = 21/104 (20%)
Query: 185 VPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPT 244
+PP Q PGQ+A LTNGD LNGH YLS YISLLLRAEPYPT
Sbjct: 1 MPPTQP------NPGQYA-LTNGDP------------LNGHC-YLSGYISLLLRAEPYPT 40
Query: 245 ARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
+RY SQCMQPNNIMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 41 SRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 84
>gi|348530340|ref|XP_003452669.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Oreochromis niloticus]
Length = 410
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/117 (92%), Positives = 115/117 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 203 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 262
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLK LHVDSAEYSCLKAIVLFT+
Sbjct: 263 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFTS 319
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 118 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 167
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 168 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 217
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 218 SAVEWARNIPFFPDLQ 233
>gi|344265387|ref|XP_003404766.1| PREDICTED: hypothetical protein LOC100660824 [Loxodonta africana]
Length = 1396
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/117 (92%), Positives = 115/117 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 1187 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 1246
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQ EKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 1247 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQGEKLKALHVDSAEYSCLKAIVLFTS 1303
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 1102 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 1151
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 1152 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 1201
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 1202 SAVEWARNIPFFPDLQ 1217
>gi|295656541|gb|ADG26733.1| COUP transcription factor 1 [Platynereis dumerilii]
Length = 302
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEW+RNIPFFPDLQVTDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 123 MGIENICELAARLLFSAVEWSRNIPFFPDLQVTDQVALLRLSWSELFVLNAAQCSMPLHV 182
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKA+VLF++
Sbjct: 183 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAVVLFSS 239
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/139 (58%), Positives = 92/139 (66%), Gaps = 24/139 (17%)
Query: 154 GKPLPLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGD 208
+ P++QH+ L L AVQRGRVPP Q PG PGQ L NGD
Sbjct: 34 NRTCPIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQH--PGF--PGQM--LANGD 87
Query: 209 SASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAAR 268
LNGH+ YLSS+IS+LLRAEPYPT+RY QCMQPNNIMGI+NICELAAR
Sbjct: 88 P------------LNGHT-YLSSFISMLLRAEPYPTSRYGQCMQPNNIMGIENICELAAR 134
Query: 269 LLFSAVEWARNIPFFPDLQ 287
LLFSAVEW+RNIPFFPDLQ
Sbjct: 135 LLFSAVEWSRNIPFFPDLQ 153
>gi|410911980|ref|XP_003969468.1| PREDICTED: COUP transcription factor 2-like [Takifugu rubripes]
Length = 431
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 115/117 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQVTDQVALLRL WSELFVLNA+QCSMP+HV
Sbjct: 224 MGIENICELAARMLFSAVEWARNIPFFPDLQVTDQVALLRLTWSELFVLNAAQCSMPVHV 283
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIRVFQEQVEKLK LHVDSAEYSC+KAIVLFTT
Sbjct: 284 APLLAAAGLHASPMSADRVVAFMDHIRVFQEQVEKLKILHVDSAEYSCIKAIVLFTT 340
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/136 (55%), Positives = 86/136 (63%), Gaps = 27/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+P GQFA LTNGD
Sbjct: 140 PVDQHHRNQCQYCRLKKCLKVGMRREAVQRGRIPTQSF-------HGQFA-LTNGDP--- 188
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
L HS YLS YISLLLRAEPYPT+R+ SQC+Q NN+MGI+NICELAAR+LF
Sbjct: 189 ---------LQCHS-YLSGYISLLLRAEPYPTSRFGSQCLQSNNLMGIENICELAARMLF 238
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 239 SAVEWARNIPFFPDLQ 254
>gi|410923623|ref|XP_003975281.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-A-like
[Takifugu rubripes]
Length = 411
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 107/117 (91%), Positives = 115/117 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEW+RNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 204 MGIENICELAARLLFSAVEWSRNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 263
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLK LHVDSAEYSCLKAIVLFT+
Sbjct: 264 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFTS 320
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 119 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 168
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 169 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 218
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEW+RNIPFFPDLQ
Sbjct: 219 SAVEWSRNIPFFPDLQ 234
>gi|47211605|emb|CAF91926.1| unnamed protein product [Tetraodon nigroviridis]
Length = 267
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 107/117 (91%), Positives = 115/117 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEW+RNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 60 MGIENICELAARLLFSAVEWSRNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 119
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLK LHVDSAEYSCLKAIVLFT+
Sbjct: 120 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFTS 176
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/110 (70%), Positives = 83/110 (75%), Gaps = 21/110 (19%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP Q PGQ+A LTNGD LNGH YLS YISLLLR
Sbjct: 1 AVQRGRMPPTQP------NPGQYA-LTNGDP------------LNGHC-YLSGYISLLLR 40
Query: 239 AEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYPT+RY SQCMQPNNIMGI+NICELAARLLFSAVEW+RNIPFFPDLQ
Sbjct: 41 AEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWSRNIPFFPDLQ 90
>gi|1703646|gb|AAB37686.1| xCOUP-TF-B=proposed retinoid receptor-mediated transcriptional
activation negative regulator [Xenopus, stage 17
embryos, Peptide, 405 aa]
Length = 405
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 108/117 (92%), Positives = 115/117 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 198 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 257
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APL AAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 258 APLSAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 314
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/136 (59%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 113 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTH------GQFA-LTNGDP--- 162
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISL+LRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 163 ---------LNCHS-YLSGYISLVLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 212
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 213 SAVEWARNIPFFPDLQ 228
>gi|405977938|gb|EKC42362.1| Nuclear receptor subfamily 2 group F member 1-A [Crassostrea gigas]
Length = 435
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/120 (89%), Positives = 117/120 (97%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFP+LQ+TDQVALLR+ WSELFVLNA+QCSMPLHV
Sbjct: 211 MGIENICELAARLLFSAVEWARNIPFFPELQITDQVALLRVSWSELFVLNAAQCSMPLHV 270
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLK LHVDSAEYSCLKAIVLF++ ++
Sbjct: 271 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKTLHVDSAEYSCLKAIVLFSSDRK 330
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 88/135 (65%), Gaps = 24/135 (17%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q PG + NGD
Sbjct: 126 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQHPFPGQV------TWANGDP--- 176
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
LNGH+ YLSS+IS+LLRAEPYPT+RY QCMQPNNIMGI+NICELAARLLFS
Sbjct: 177 ---------LNGHT-YLSSFISMLLRAEPYPTSRYGQCMQPNNIMGIENICELAARLLFS 226
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFP+LQ
Sbjct: 227 AVEWARNIPFFPELQ 241
>gi|355707891|gb|AES03097.1| nuclear receptor subfamily 2, group F, member 1 [Mustela putorius
furo]
Length = 275
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 108/117 (92%), Positives = 115/117 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSM LHV
Sbjct: 69 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMQLHV 128
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 129 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 185
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 83/111 (74%), Gaps = 21/111 (18%)
Query: 178 TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLL 237
T VQRGR+PP Q PGQ+A LTNGD LNGH YLS YISLLL
Sbjct: 9 TPVQRGRMPPTQP------NPGQYA-LTNGDP------------LNGHC-YLSGYISLLL 48
Query: 238 RAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
RAEPYPT+RY SQCMQPNNIMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 49 RAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 99
>gi|284424952|dbj|BAI67122.1| nuclear receptor [Taeniopygia guttata]
Length = 181
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/116 (92%), Positives = 114/116 (98%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
I+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHVAP
Sbjct: 1 IENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAP 60
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
LLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 61 LLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSD 116
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/29 (93%), Positives = 29/29 (100%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQ 287
I+NICELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 1 IENICELAARMLFSAVEWARNIPFFPDLQ 29
>gi|443685606|gb|ELT89160.1| hypothetical protein CAPTEDRAFT_171549 [Capitella teleta]
Length = 428
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/117 (92%), Positives = 114/117 (97%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEW RNIPFFPDLQV DQVALLRL WSELFVLNA+QC+MPLHV
Sbjct: 221 MGIENICELAARLLFSAVEWGRNIPFFPDLQVADQVALLRLAWSELFVLNAAQCAMPLHV 280
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLF++
Sbjct: 281 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFSS 337
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/135 (58%), Positives = 88/135 (65%), Gaps = 23/135 (17%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L + AVQRGRVPP Q PG PGQ A L N D S
Sbjct: 135 PIDQHHRNQCQYCRFKKCLKSGMRREAVQRGRVPPTQH--PGF--PGQLA-LANTDPFS- 188
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
GH+ YLSS+IS+LLRAEPYP +RY QCMQPNNIMGI+NICELAARLLFS
Sbjct: 189 -----------GHT-YLSSFISMLLRAEPYPMSRYGQCMQPNNIMGIENICELAARLLFS 236
Query: 273 AVEWARNIPFFPDLQ 287
AVEW RNIPFFPDLQ
Sbjct: 237 AVEWGRNIPFFPDLQ 251
>gi|440907586|gb|ELR57717.1| COUP transcription factor 1, partial [Bos grunniens mutus]
Length = 368
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 107/114 (93%), Positives = 113/114 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 160 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 219
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVL
Sbjct: 220 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVL 273
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/137 (58%), Positives = 89/137 (64%), Gaps = 27/137 (19%)
Query: 158 PLNQHYTATISNVPLSSSLSTAVQR------GRVPPNQSCLPGGLGPGQFAALTNGDSAS 211
P++QH+ L L ++R G +PP Q PGQ+A LTNGD
Sbjct: 74 PIDQHHRNQCQYCRLKKCLKVGMRREGLVLPGLMPPTQP------NPGQYA-LTNGDP-- 124
Query: 212 AASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLL 270
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLL
Sbjct: 125 ----------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLL 173
Query: 271 FSAVEWARNIPFFPDLQ 287
FSAVEWARNIPFFPDLQ
Sbjct: 174 FSAVEWARNIPFFPDLQ 190
>gi|403256259|ref|XP_003920806.1| PREDICTED: COUP transcription factor 1 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 281
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/116 (90%), Positives = 113/116 (97%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 72 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 131
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCL +V+FT
Sbjct: 132 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLSPVVVFT 187
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 84/111 (75%), Gaps = 21/111 (18%)
Query: 178 TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLL 237
+AVQRGR+PP Q PGQ+A LTNGD LNGH YLS YISLLL
Sbjct: 12 SAVQRGRMPPTQP------NPGQYA-LTNGDP------------LNGHC-YLSGYISLLL 51
Query: 238 RAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
RAEPYPT+RY SQCMQPNNIMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 52 RAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 102
>gi|13592107|ref|NP_112392.1| nuclear receptor subfamily 2, group F, member 1 [Rattus norvegicus]
gi|506762|gb|AAA83437.1| orphan receptor COUP-TFI [Rattus norvegicus]
Length = 419
Score = 223 bits (569), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 107/117 (91%), Positives = 115/117 (98%), Gaps = 1/117 (0%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 211 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 270
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
A +LAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 271 A-VLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 326
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 126 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 175
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 176 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 225
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 226 SAVEWARNIPFFPDLQ 241
>gi|301618212|ref|XP_002938509.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Xenopus (Silurana) tropicalis]
Length = 398
Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 104/116 (89%), Positives = 113/116 (97%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSA+EWA+NIPFFPD Q++DQV+LLR+ WSELFVLNA+QCSMPLHV
Sbjct: 191 MGIENICELAARLLFSAIEWAKNIPFFPDFQLSDQVSLLRMTWSELFVLNAAQCSMPLHV 250
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHASPM+ADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAI LFT
Sbjct: 251 APLLAAAGLHASPMSADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIALFT 306
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 86/136 (63%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+ Q+ PGQ+ L N D
Sbjct: 106 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMSHPQT------SPGQYT-LNNVDP--- 155
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
NGHS YL+ +ISLLLRAEPYPT+RY +QC+QPNNIMGI+NICELAARLLF
Sbjct: 156 ---------YNGHS-YLTGFISLLLRAEPYPTSRYGAQCLQPNNIMGIENICELAARLLF 205
Query: 272 SAVEWARNIPFFPDLQ 287
SA+EWA+NIPFFPD Q
Sbjct: 206 SAIEWAKNIPFFPDFQ 221
>gi|20589475|ref|NP_571261.1| nuclear receptor subfamily 2 group F member 5 [Danio rerio]
gi|6094378|sp|Q06726.1|NR2F5_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 5;
AltName: Full=Steroid receptor homolog SVP 46
gi|296421|emb|CAA49781.1| spv 46 [Danio rerio]
gi|190339654|gb|AAI62999.1| Nr2f5 protein [Danio rerio]
gi|190340229|gb|AAI62963.1| Nuclear receptor subfamily 2, group F, member 5 [Danio rerio]
Length = 403
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/136 (79%), Positives = 121/136 (88%), Gaps = 4/136 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWA+NIPFFPDLQ+ DQVALLR+ WSELFVLNA+QCSMPLHV
Sbjct: 182 MGIENICELAARLLFSAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHV 241
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAGLHASPM+A+RVVAFMDHIRVFQEQVEKLKAL VD+AEYSCLK+IVLFT+
Sbjct: 242 APLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAM 301
Query: 121 IFTGVLLKALHVDSAE 136
+ V HV+S +
Sbjct: 302 GLSDV----AHVESIQ 313
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/139 (52%), Positives = 87/139 (62%), Gaps = 26/139 (18%)
Query: 155 KPLPLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDS 209
+ P++QH+ L L AVQRGR+ +QS PGQ+ L+NG
Sbjct: 94 RDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMSNSQS------SPGQY--LSNGSD 145
Query: 210 ASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAAR 268
NG YLS +ISLLLRAEPYPT+RY +QCMQ NN+MGI+NICELAAR
Sbjct: 146 P-----------YNGQP-YLSGFISLLLRAEPYPTSRYGAQCMQSNNLMGIENICELAAR 193
Query: 269 LLFSAVEWARNIPFFPDLQ 287
LLFSAVEWA+NIPFFPDLQ
Sbjct: 194 LLFSAVEWAKNIPFFPDLQ 212
>gi|348511313|ref|XP_003443189.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oreochromis niloticus]
Length = 404
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/117 (88%), Positives = 114/117 (97%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWA+NIPFFPDLQ+ DQVALLR+ WSELFVLNA+QCSMPLHV
Sbjct: 182 MGIENICELAARLLFSAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHV 241
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+A+RVVAFMDHIRVFQEQVEKLKAL VD+AEYSCLK+IVLFT+
Sbjct: 242 APLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTS 298
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/139 (53%), Positives = 86/139 (61%), Gaps = 26/139 (18%)
Query: 155 KPLPLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDS 209
+ P++QH+ L L AVQRGR +QS PGQ+ LTNG
Sbjct: 94 RDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRTSNSQS------SPGQY--LTNGTD 145
Query: 210 ASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAAR 268
NG YLS +ISLLLRAEPYPT+RY +QCMQ NN+MGI+NICELAAR
Sbjct: 146 P-----------YNGQP-YLSGFISLLLRAEPYPTSRYGAQCMQGNNLMGIENICELAAR 193
Query: 269 LLFSAVEWARNIPFFPDLQ 287
LLFSAVEWA+NIPFFPDLQ
Sbjct: 194 LLFSAVEWAKNIPFFPDLQ 212
>gi|47214501|emb|CAG00925.1| unnamed protein product [Tetraodon nigroviridis]
Length = 383
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/117 (88%), Positives = 114/117 (97%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWA+NIPFFPDLQ+ DQVALLR+ WSELFVLNA+QCSMPLHV
Sbjct: 180 MGIENICELAARLLFSAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHV 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+A+RVVAFMDHIRVFQEQVEKLKAL VD+AEYSCLK+IVLFT+
Sbjct: 240 APLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTS 296
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 68/91 (74%), Gaps = 15/91 (16%)
Query: 198 PGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNI 256
PGQ+ LTNG NG YLS +ISLLLRAEPYPT+RY +QCMQ NN+
Sbjct: 134 PGQY--LTNGTDP-----------YNGQP-YLSGFISLLLRAEPYPTSRYGAQCMQGNNL 179
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
MGI+NICELAARLLFSAVEWA+NIPFFPDLQ
Sbjct: 180 MGIENICELAARLLFSAVEWAKNIPFFPDLQ 210
>gi|432910588|ref|XP_004078428.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Oryzias latipes]
Length = 404
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/136 (79%), Positives = 121/136 (88%), Gaps = 4/136 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWA+NIPFFPDLQ+ DQVALLR+ WSELFVLNA+QCSMPLHV
Sbjct: 182 MGIENICELAARLLFSAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHV 241
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAGLHASPM+A+RVVAFMDHIRVFQEQVEKLKAL VD+AEYSCLK+IVLFT+
Sbjct: 242 APLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAM 301
Query: 121 IFTGVLLKALHVDSAE 136
+ V HV+S +
Sbjct: 302 GLSDV----AHVESIQ 313
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/140 (52%), Positives = 86/140 (61%), Gaps = 26/140 (18%)
Query: 154 GKPLPLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGD 208
+ P++QH+ L L AVQRGR +QS PGQ+ LTNG
Sbjct: 93 NRDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRTSNSQS------SPGQY--LTNGT 144
Query: 209 SASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAA 267
NG YLS +ISLLLRAEPYPT+RY +QCMQ NN+MGI+NICELAA
Sbjct: 145 DP-----------YNGQP-YLSGFISLLLRAEPYPTSRYGAQCMQGNNLMGIENICELAA 192
Query: 268 RLLFSAVEWARNIPFFPDLQ 287
RLLFSAVEWA+NIPFFPDLQ
Sbjct: 193 RLLFSAVEWAKNIPFFPDLQ 212
>gi|55925486|ref|NP_956886.1| nuclear receptor subfamily 2 group F member 1-B [Danio rerio]
gi|82202654|sp|Q6PH18.1|N2F1B_DANRE RecName: Full=Nuclear receptor subfamily 2 group F member 1-B;
AltName: Full=COUP transcription factor 1-B;
Short=COUP-TFalpha-B
gi|34785135|gb|AAH56748.1| Nuclear receptor subfamily 2, group F, member 1b [Danio rerio]
Length = 389
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/117 (90%), Positives = 112/117 (95%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+Q SMPLHV
Sbjct: 182 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQSSMPLHV 241
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR FQEQVEKLKAL VDSAEYSC KAIVLFT+
Sbjct: 242 APLLAAAGLHASPMSADRVVAFMDHIRFFQEQVEKLKALQVDSAEYSCAKAIVLFTS 298
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 86/136 (63%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PPNQ P +A LTNGD
Sbjct: 97 PVDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPNQP------NPSHYA-LTNGDH--- 146
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNG YLS YISLLLRAEPYP +RY +QCMQ NIMGI+NICELAARLLF
Sbjct: 147 ---------LNGQC-YLSGYISLLLRAEPYPASRYGNQCMQSGNIMGIENICELAARLLF 196
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 197 SAVEWARNIPFFPDLQ 212
>gi|410904505|ref|XP_003965732.1| PREDICTED: nuclear receptor subfamily 2 group F member 5-like
[Takifugu rubripes]
Length = 404
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/117 (88%), Positives = 114/117 (97%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWA+NIPFFPDLQ+ DQVALLR+ WSELFVLNA+QCSMPLHV
Sbjct: 182 MGIENICELAARLLFSAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHV 241
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+A+RVVAFMDHIRVFQEQVEKLKAL VD+AEYSCLK+IVLFT+
Sbjct: 242 APLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTS 298
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/139 (53%), Positives = 86/139 (61%), Gaps = 26/139 (18%)
Query: 155 KPLPLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDS 209
+ P++QH+ L L AVQRGR +QS PGQ+ LTNG
Sbjct: 94 RDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRTSNSQS------SPGQY--LTNGTD 145
Query: 210 ASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAAR 268
NG YLS +ISLLLRAEPYPT+RY +QCMQ NN+MGI+NICELAAR
Sbjct: 146 P-----------YNGQP-YLSGFISLLLRAEPYPTSRYGAQCMQGNNLMGIENICELAAR 193
Query: 269 LLFSAVEWARNIPFFPDLQ 287
LLFSAVEWA+NIPFFPDLQ
Sbjct: 194 LLFSAVEWAKNIPFFPDLQ 212
>gi|41351197|gb|AAH65651.1| Nr2f1b protein [Danio rerio]
Length = 388
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/117 (90%), Positives = 112/117 (95%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+Q SMPLHV
Sbjct: 181 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQSSMPLHV 240
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR FQEQVEKLKAL VDSAEYSC KAIVLFT+
Sbjct: 241 APLLAAAGLHASPMSADRVVAFMDHIRFFQEQVEKLKALQVDSAEYSCAKAIVLFTS 297
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 85/135 (62%), Gaps = 25/135 (18%)
Query: 158 PLNQHYTATISNVPLSSSLSTA----VQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAA 213
P++QH+ L L VQRGR+PPNQ P +A LTNGD
Sbjct: 97 PVDQHHRNQCQYCRLKKCLKVGMRREVQRGRMPPNQP------NPSHYA-LTNGDH---- 145
Query: 214 SAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFS 272
LNG YLS YISLLLRAEPYP +RY +QCMQ NIMGI+NICELAARLLFS
Sbjct: 146 --------LNGQC-YLSGYISLLLRAEPYPASRYGNQCMQSGNIMGIENICELAARLLFS 196
Query: 273 AVEWARNIPFFPDLQ 287
AVEWARNIPFFPDLQ
Sbjct: 197 AVEWARNIPFFPDLQ 211
>gi|156119469|ref|NP_001095229.1| nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis]
gi|64643|emb|CAA44806.1| Coup transcription factor [Xenopus laevis]
Length = 397
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/116 (87%), Positives = 112/116 (96%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSA+EWA+NIPFFPD Q++DQV+LLR+ WSELFVLNA+QCSMPLHV
Sbjct: 190 MGIENICELAARLLFSAIEWAKNIPFFPDFQLSDQVSLLRMTWSELFVLNAAQCSMPLHV 249
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLA AGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAI LFT
Sbjct: 250 APLLARAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIALFT 305
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/135 (52%), Positives = 85/135 (62%), Gaps = 25/135 (18%)
Query: 158 PLNQHYTATISNVPLSSSLSTA----VQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAA 213
P++QH+ L L VQRGR+ Q+ PGQ+ L N D
Sbjct: 106 PIDQHHRNQCQYCRLKKCLKVGMRREVQRGRMSHPQT------SPGQYT-LNNVDP---- 154
Query: 214 SAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFS 272
NGHS YL+ +ISLLLRAEPYPT+RY +QC+QPNNIMGI+NICELAARLLFS
Sbjct: 155 --------YNGHS-YLTGFISLLLRAEPYPTSRYGAQCLQPNNIMGIENICELAARLLFS 205
Query: 273 AVEWARNIPFFPDLQ 287
A+EWA+NIPFFPD Q
Sbjct: 206 AIEWAKNIPFFPDFQ 220
>gi|327287768|ref|XP_003228600.1| PREDICTED: COUP transcription factor 2-like, partial [Anolis
carolinensis]
Length = 266
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/116 (88%), Positives = 111/116 (95%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSA+EWA+NIPFFPD Q+ DQV LLR+ WSELFVLNA+QC+MPLHV
Sbjct: 59 MGIENICELAARLLFSAIEWAKNIPFFPDFQLADQVCLLRMTWSELFVLNAAQCAMPLHV 118
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHASPM A+RVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT
Sbjct: 119 APLLAAAGLHASPMPAERVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 174
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 75/109 (68%), Gaps = 21/109 (19%)
Query: 180 VQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRA 239
VQRGR+ Q PGQ+ + NGD N H+ YL+ +ISLLLRA
Sbjct: 1 VQRGRMAHAQP------SPGQYP-MANGDP------------YNCHA-YLTGFISLLLRA 40
Query: 240 EPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
EPYPT+R+ +QC+QP NIMGI+NICELAARLLFSA+EWA+NIPFFPD Q
Sbjct: 41 EPYPTSRHGAQCLQPGNIMGIENICELAARLLFSAIEWAKNIPFFPDFQ 89
>gi|403256261|ref|XP_003920807.1| PREDICTED: COUP transcription factor 1 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 279
Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 101/108 (93%), Positives = 107/108 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 64 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 123
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSC 108
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSC
Sbjct: 124 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSC 171
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/110 (70%), Positives = 83/110 (75%), Gaps = 21/110 (19%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
+VQRGR+PP Q PGQ+A LTNGD LNGH YLS YISLLLR
Sbjct: 5 SVQRGRMPPTQP------NPGQYA-LTNGDP------------LNGHC-YLSGYISLLLR 44
Query: 239 AEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYPT+RY SQCMQPNNIMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 45 AEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 94
>gi|391338722|ref|XP_003743704.1| PREDICTED: steroid receptor seven-up, isoforms B/C-like
[Metaseiulus occidentalis]
Length = 394
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/117 (84%), Positives = 110/117 (94%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+ +CELA+RLL+SA++WARNIPFF DLQ+TDQVALLR WSELFVLNASQCSMPLHV
Sbjct: 188 MGIEGMCELASRLLYSAIDWARNIPFFADLQLTDQVALLRQAWSELFVLNASQCSMPLHV 247
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
A LLAA+GLHA+PMAADRVVAFMDHIR+FQEQVEKLKALH+D EYSCLKAIVLFTT
Sbjct: 248 ATLLAASGLHAAPMAADRVVAFMDHIRIFQEQVEKLKALHIDGPEYSCLKAIVLFTT 304
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 80/133 (60%), Gaps = 9/133 (6%)
Query: 158 PLNQHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAI 217
P++QH+ + L L ++R S + G+ ++G S+S+ +
Sbjct: 92 PIDQHHRNQCQDCRLKKCLKMGMRR-----EVSIFTLAVQRGRVPPSSHGPSSSSNGSPP 146
Query: 218 AAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCM---QPNNIMGIDNICELAARLLFSAV 274
LNG +SY+SS++SLLLRA+ +R+ QCM Q N IMGI+ +CELA+RLL+SA+
Sbjct: 147 QHLPLNG-ASYISSFVSLLLRADSLSPSRFVQCMAGGQNNPIMGIEGMCELASRLLYSAI 205
Query: 275 EWARNIPFFPDLQ 287
+WARNIPFF DLQ
Sbjct: 206 DWARNIPFFADLQ 218
>gi|118343705|ref|NP_001071673.1| nuclear receptor [Ciona intestinalis]
gi|70569140|dbj|BAE06356.1| nuclear receptor [Ciona intestinalis]
Length = 416
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/116 (87%), Positives = 110/116 (94%), Gaps = 1/116 (0%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFP+LQVTDQVA+L+ VWSELFVLNA+Q MPLHV
Sbjct: 209 MGIDNICELAARLLFSAVEWARNIPFFPELQVTDQVAMLKWVWSELFVLNAAQSHMPLHV 268
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLH S M+ADRV+ FMDHIR+FQEQVE+LK+LHVDSAEYSCLKAIVLFT
Sbjct: 269 APLLAAAGLHTS-MSADRVMTFMDHIRIFQEQVERLKSLHVDSAEYSCLKAIVLFT 323
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 86/136 (63%), Gaps = 24/136 (17%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L+ + AVQRGR+PP+Q GQ+A +TNG +
Sbjct: 122 PIDQHHRNQCQYCRLNKCVKIGMRREAVQRGRMPPSQP-----HTTGQYA-ITNGVES-- 173
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYS-QCMQPNNIMGIDNICELAARLLF 271
N Y+S YIS+LLRAEPYPT+R++ QC PN IMGIDNICELAARLLF
Sbjct: 174 ----------NFGPGYMSGYISMLLRAEPYPTSRFALQCPVPNQIMGIDNICELAARLLF 223
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFP+LQ
Sbjct: 224 SAVEWARNIPFFPELQ 239
>gi|449281976|gb|EMC88912.1| COUP transcription factor 2 [Columba livia]
Length = 281
Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 98/117 (83%), Positives = 107/117 (91%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 74 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 133
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHV +E C I F++
Sbjct: 134 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVAVSEKKCPDPIREFSS 190
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 77/110 (70%), Positives = 82/110 (74%), Gaps = 21/110 (19%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP Q GQFA LTNGD LN HS YLS YISLLLR
Sbjct: 15 AVQRGRMPPTQPT------HGQFA-LTNGDP------------LNCHS-YLSGYISLLLR 54
Query: 239 AEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 55 AEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 104
>gi|126324155|ref|XP_001369925.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Monodelphis domestica]
Length = 732
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/116 (83%), Positives = 105/116 (90%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFS VEWARNIPFFP+L V DQVALLRL WSELFVLNA+Q ++PLH+
Sbjct: 525 MGIDNICELAARLLFSTVEWARNIPFFPELPVADQVALLRLSWSELFVLNAAQSALPLHM 584
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAG HA+PMAADRVV+FMD IRVFQEQV+KL L VDSAEYSCLKAI LFT
Sbjct: 585 APLLAAAGFHAAPMAADRVVSFMDQIRVFQEQVDKLNRLQVDSAEYSCLKAIALFT 640
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 63/110 (57%), Gaps = 20/110 (18%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P S G S +A + NG +S IS LLR
Sbjct: 463 AVQRGRIPHPHS----------------GGSPTALAGGGGGEYFNGQP--VSELISQLLR 504
Query: 239 AEPYPTARYSQ--CMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP ARY Q ++MGIDNICELAARLLFS VEWARNIPFFP+L
Sbjct: 505 AEPYPAARYGSQYAQQQGSVMGIDNICELAARLLFSTVEWARNIPFFPEL 554
>gi|339248543|ref|XP_003373259.1| COUP transcription factor 1 [Trichinella spiralis]
gi|316970658|gb|EFV54551.1| COUP transcription factor 1 [Trichinella spiralis]
Length = 490
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 97/117 (82%), Positives = 107/117 (91%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFSAVEWARNIPFFP+L VTDQVALLR+ WSELFVLNA+Q MPLHV
Sbjct: 361 VGIDNLCELAARLLFSAVEWARNIPFFPELLVTDQVALLRMAWSELFVLNAAQAGMPLHV 420
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGL S MAA+RVV FMDHIR+FQ+Q+EKLK L VDSAEYSC+KAIVLFTT
Sbjct: 421 APLLAAAGLQTSLMAAERVVLFMDHIRIFQDQIEKLKMLQVDSAEYSCIKAIVLFTT 477
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 80/123 (65%), Gaps = 24/123 (19%)
Query: 169 NVPLSSSLSTA--VQRGRVPPNQSCLPGGLGPGQFA-ALTNGDSASAASAAIAAAGLNGH 225
N+ LSS+ ++A VQRGR+ N L P A A +GDS + G+
Sbjct: 287 NLRLSSAFASAETVQRGRIATN-------LNPYVNAVAFVSGDS------------IAGN 327
Query: 226 SSYLSSYISLLLRAEPYPTARYSQCM--QPNNIMGIDNICELAARLLFSAVEWARNIPFF 283
+YLS++++LLLRAEPYP +R+ + NI+GIDN+CELAARLLFSAVEWARNIPFF
Sbjct: 328 HAYLSNFVTLLLRAEPYPISRFGAGVLQSAGNIVGIDNLCELAARLLFSAVEWARNIPFF 387
Query: 284 PDL 286
P+L
Sbjct: 388 PEL 390
>gi|156374224|ref|XP_001629708.1| predicted protein [Nematostella vectensis]
gi|156216714|gb|EDO37645.1| predicted protein [Nematostella vectensis]
Length = 366
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/117 (81%), Positives = 110/117 (94%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDL VTDQVALLRLVWSELFVLNA+QC MPL V
Sbjct: 159 MGIENICELAARLLFSAVEWARNIPFFPDLAVTDQVALLRLVWSELFVLNAAQCPMPLQV 218
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLA AG+H++ M+ DR+V+FMD+IR+FQEQVEKL+ LHVD+AE++CLKAIVLFT+
Sbjct: 219 APLLATAGIHSNHMSPDRMVSFMDNIRIFQEQVEKLRNLHVDAAEFACLKAIVLFTS 275
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/140 (51%), Positives = 85/140 (60%), Gaps = 27/140 (19%)
Query: 155 KPLPLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAAL--TNG 207
+ P++QH+ L L AVQRGR+P Q+ P Q AAL NG
Sbjct: 68 RDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRIPAAQT-------PTQNAALPGING 120
Query: 208 DSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQ-PNNIMGIDNICELA 266
D ++ NGHS YLS +I+LLLRAEPYPT R+ Q + P IMGI+NICELA
Sbjct: 121 DGST-----------NGHS-YLSGFIALLLRAEPYPTTRFQQGLNMPCGIMGIENICELA 168
Query: 267 ARLLFSAVEWARNIPFFPDL 286
ARLLFSAVEWARNIPFFPDL
Sbjct: 169 ARLLFSAVEWARNIPFFPDL 188
>gi|363745928|ref|XP_003643465.1| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Gallus gallus]
Length = 300
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 96/116 (82%), Positives = 106/116 (91%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFS VEWARNIPFFP+L V+DQVALLRL WSELFVLNA+Q ++PLH+
Sbjct: 93 MGIDNICELAARLLFSTVEWARNIPFFPELPVSDQVALLRLSWSELFVLNAAQSALPLHM 152
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAG HASPM+ADRVV+FMD IR+FQ+QVEKL L VDSAEYSCLKAI LFT
Sbjct: 153 APLLAAAGFHASPMSADRVVSFMDQIRIFQDQVEKLNRLQVDSAEYSCLKAIALFT 208
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 73/123 (59%), Gaps = 24/123 (19%)
Query: 165 ATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNG 224
A +S+ PL AVQRGR+PP S +++ +A + NG
Sbjct: 23 ALMSDPPLYPP--AAVQRGRIPPTHS-------------------SASPTAMPSGEYFNG 61
Query: 225 HSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFF 283
+S IS LLRAEPYP ARY SQ Q ++MGIDNICELAARLLFS VEWARNIPFF
Sbjct: 62 QP--VSELISQLLRAEPYPAARYGSQYAQQGSVMGIDNICELAARLLFSTVEWARNIPFF 119
Query: 284 PDL 286
P+L
Sbjct: 120 PEL 122
>gi|349804913|gb|AEQ17929.1| putative nuclear receptor subfamily 2 group f number 1
[Hymenochirus curtipes]
Length = 168
Score = 204 bits (518), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/118 (91%), Positives = 116/118 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSA+EWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 19 MGIENICELAARLLFSAIEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 78
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
APLLAAAGLHA+PM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 79 APLLAAAGLHAAPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSD 136
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/49 (87%), Positives = 48/49 (97%), Gaps = 1/49 (2%)
Query: 240 EPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
EPYPT+RY +QC+QPNNIMGI+NICELAARLLFSA+EWARNIPFFPDLQ
Sbjct: 1 EPYPTSRYGAQCLQPNNIMGIENICELAARLLFSAIEWARNIPFFPDLQ 49
>gi|397504531|ref|XP_003822842.1| PREDICTED: COUP transcription factor 1 [Pan paniscus]
Length = 523
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 96/114 (84%), Positives = 104/114 (91%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 314 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 373
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHV A++L
Sbjct: 374 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVXXXXXXXXGAVLL 427
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 229 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 278
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 279 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 328
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 329 SAVEWARNIPFFPDLQ 344
>gi|224151159|ref|XP_002199588.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Taeniopygia guttata]
Length = 318
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 98/116 (84%), Positives = 105/116 (90%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M IDNICELAARLLFS VEWARNIPFFP+L V+DQVALLRL WSELFVLNA+Q ++PLH+
Sbjct: 111 MAIDNICELAARLLFSTVEWARNIPFFPELPVSDQVALLRLSWSELFVLNAAQSALPLHM 170
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAG HASPM+ADRVVAFMD IRVFQEQVEKL L VDSAEYSCLKAI LFT
Sbjct: 171 APLLAAAGFHASPMSADRVVAFMDQIRVFQEQVEKLNRLQVDSAEYSCLKAIALFT 226
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 65/112 (58%), Gaps = 22/112 (19%)
Query: 177 STAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLL 236
AVQRGR+PP+ S GG + A+ AAG + +S IS L
Sbjct: 49 KEAVQRGRIPPSHS---GG-----------------SPNALPAAGDFFNGQPVSELISQL 88
Query: 237 LRAEPYPTARY--SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
LRAEPYP ARY QP M IDNICELAARLLFS VEWARNIPFFP+L
Sbjct: 89 LRAEPYPAARYGAQYAQQPGGAMAIDNICELAARLLFSTVEWARNIPFFPEL 140
>gi|345325512|ref|XP_001506145.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Ornithorhynchus anatinus]
Length = 342
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 96/116 (82%), Positives = 106/116 (91%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFS VEWARNIPFFP+L V+DQV+LLRL WSELFVLNA+Q ++PLH+
Sbjct: 135 MGIDNICELAARLLFSTVEWARNIPFFPELPVSDQVSLLRLSWSELFVLNAAQSALPLHM 194
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAG HASPM+ADRVV+FMD IRVFQ+QVEKL L VDSAEYSCLKAI LFT
Sbjct: 195 APLLAAAGFHASPMSADRVVSFMDQIRVFQDQVEKLSRLQVDSAEYSCLKAIALFT 250
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/148 (43%), Positives = 76/148 (51%), Gaps = 29/148 (19%)
Query: 146 FTTGKRMFGKPLPLNQHYTATISNVPLSSSL-----STAVQRGRVPPNQSCL-PGGLGPG 199
F G M + ++QH+ L AVQRGR+P + S P L G
Sbjct: 39 FGVGGTMSNRDCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHSHSSTSPTALPSG 98
Query: 200 QFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMG 258
++ NG +S IS LLRAEPYP ARY SQ Q ++MG
Sbjct: 99 EY--------------------FNGQP--VSELISQLLRAEPYPAARYGSQYAQQGSVMG 136
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
IDNICELAARLLFS VEWARNIPFFP+L
Sbjct: 137 IDNICELAARLLFSTVEWARNIPFFPEL 164
>gi|16797884|gb|AAL29200.1|AF323687_1 nuclear receptor AmNR7 [Acropora millepora]
Length = 368
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 92/117 (78%), Positives = 109/117 (93%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDL VTDQVALLRLVWSELFVLNA+QC MPL V
Sbjct: 161 MGIENICELAARLLFSAVEWARNIPFFPDLAVTDQVALLRLVWSELFVLNAAQCPMPLQV 220
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLA+AG+H++ M+ DR+V FMD++R+FQEQ+EK + LHVD+AE++CLKAIVLFT+
Sbjct: 221 APLLASAGIHSNHMSPDRMVTFMDNVRIFQEQIEKYRNLHVDAAEFACLKAIVLFTS 277
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 83/135 (61%), Gaps = 23/135 (17%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L + AVQRGR+PP Q P Q +AL NG+ S
Sbjct: 73 PIDQHHRNQCQYCRLRKCMKVGMRREAVQRGRIPPTQVPQPSP----QHSAL-NGNDVS- 126
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQ-PNNIMGIDNICELAARLLF 271
NGHS +LS +ISLLLRAEPYPT R+ Q M P IMGI+NICELAARLLF
Sbjct: 127 ----------NGHS-FLSGFISLLLRAEPYPTTRFQQGMNMPCGIMGIENICELAARLLF 175
Query: 272 SAVEWARNIPFFPDL 286
SAVEWARNIPFFPDL
Sbjct: 176 SAVEWARNIPFFPDL 190
>gi|432913184|ref|XP_004078947.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 120/152 (78%), Gaps = 7/152 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFS VEWARNIP+FP+L V+DQVALLRL WSELF+LNA+Q S+PLH+
Sbjct: 199 MGIDNICELAARLLFSTVEWARNIPYFPELPVSDQVALLRLSWSELFILNAAQSSLPLHM 258
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAG H+SPM+A+RVV+FMD +R+FQ+QV+KL L VDSAEYSCLKAI LF+
Sbjct: 259 APLLAAAGFHSSPMSAERVVSFMDQVRMFQDQVDKLTRLQVDSAEYSCLKAIALFSPD-- 316
Query: 121 IFTGVLLKALHVDSAEYSCLKAIVLFTTGKRM 152
L +HV+S + KA V T +RM
Sbjct: 317 --ACGLTDPVHVESLQE---KAQVALTEYERM 343
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 69/112 (61%), Gaps = 9/112 (8%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP S P G ++L G+ ++ + +S IS LLR
Sbjct: 122 AVQRGRIPPQPSLSPSITPIGGTSSLAGGEFYNSNNNGGNGG-----GQPVSELISQLLR 176
Query: 239 AEPYPTAR----YSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP +R Y+Q P+N MGIDNICELAARLLFS VEWARNIP+FP+L
Sbjct: 177 AEPYPNSRFGHQYNQQTGPDNAMGIDNICELAARLLFSTVEWARNIPYFPEL 228
>gi|410924582|ref|XP_003975760.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 404
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/152 (65%), Positives = 120/152 (78%), Gaps = 7/152 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFS VEWARNIP+FP+L V+DQVALLRL WSELF+LNA+Q ++PLH+
Sbjct: 197 MGIDNICELAARLLFSIVEWARNIPYFPELPVSDQVALLRLSWSELFILNAAQSALPLHM 256
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAG H+SPM+A+RVV+FMD +RVFQ+QV+KL L VDSAEYSCLKAI LF+
Sbjct: 257 APLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLTRLQVDSAEYSCLKAIALFSPD-- 314
Query: 121 IFTGVLLKALHVDSAEYSCLKAIVLFTTGKRM 152
L +HV+S + KA V T +RM
Sbjct: 315 --ACGLTDPVHVESLQE---KAQVALTEYERM 341
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 68/112 (60%), Gaps = 11/112 (9%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGRVPP S P + P G S G++G +S IS LLR
Sbjct: 122 AVQRGRVPPQPSLSPS-ITP------IGGSSGLGGEFYNNNNGISGGGQPVSELISQLLR 174
Query: 239 AEPYPTARY----SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP +RY SQ P+N MGIDNICELAARLLFS VEWARNIP+FP+L
Sbjct: 175 AEPYPGSRYGHQYSQQSGPDNSMGIDNICELAARLLFSIVEWARNIPYFPEL 226
>gi|348500378|ref|XP_003437750.1| PREDICTED: COUP transcription factor 2-like [Oreochromis niloticus]
Length = 410
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/117 (90%), Positives = 113/117 (96%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GI+NICELAAR+LFSAVEWARNIPFFPDLQV DQVALLRL WSELFVLNA+QCSMP+H
Sbjct: 203 LGIENICELAARMLFSAVEWARNIPFFPDLQVPDQVALLRLTWSELFVLNAAQCSMPVHA 262
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIRVFQEQVEKLK LHVDSAEYSC+KAIVLFTT
Sbjct: 263 APLLAAAGLHASPMSADRVVAFMDHIRVFQEQVEKLKVLHVDSAEYSCIKAIVLFTT 319
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/136 (55%), Positives = 86/136 (63%), Gaps = 27/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+P GQFA LTNGD
Sbjct: 119 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRIPTQSY-------HGQFA-LTNGDP--- 167
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
L HS YLS YISLLLRAEPYPT+R+ SQC+Q NNI+GI+NICELAAR+LF
Sbjct: 168 ---------LQCHS-YLSGYISLLLRAEPYPTSRFGSQCLQNNNILGIENICELAARMLF 217
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 218 SAVEWARNIPFFPDLQ 233
>gi|348501001|ref|XP_003438059.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 410
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 99/152 (65%), Positives = 120/152 (78%), Gaps = 7/152 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFS VEWARNIP+FP+L V+DQVALLRL WSELF+L+A+Q ++PLH+
Sbjct: 198 MGIDNICELAARLLFSTVEWARNIPYFPELPVSDQVALLRLSWSELFILSAAQSALPLHM 257
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAG H+SPM+A+RVV+FMD +RVFQ+QV+KL L VDSAEYSCLKAI LF+
Sbjct: 258 APLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLTRLQVDSAEYSCLKAIALFSPD-- 315
Query: 121 IFTGVLLKALHVDSAEYSCLKAIVLFTTGKRM 152
L +HV+S + KA V T +RM
Sbjct: 316 --ACGLTDPVHVESLQE---KAQVALTEYERM 342
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 64/112 (57%), Gaps = 10/112 (8%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP S P + G +G +S IS LLR
Sbjct: 122 AVQRGRIPPQPSLSPS------ITPIGGASGLGGGEFYNNNNGGSGGGQPVSELISQLLR 175
Query: 239 AEPYPTARY----SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP +RY +Q P+N MGIDNICELAARLLFS VEWARNIP+FP+L
Sbjct: 176 AEPYPNSRYGHQYNQQAGPDNAMGIDNICELAARLLFSTVEWARNIPYFPEL 227
>gi|47216397|emb|CAG01948.1| unnamed protein product [Tetraodon nigroviridis]
Length = 426
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 90/116 (77%), Positives = 106/116 (91%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFS VEWARNIP+FP+L V+DQVALLRL WSELF+LNA+Q ++PLH+
Sbjct: 197 MGIDNICELAARLLFSIVEWARNIPYFPELPVSDQVALLRLSWSELFILNAAQSALPLHM 256
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAG H+SPM+A+RVV+FMD +RVFQ+QV+KL L VDSAEYSCLKAI LF+
Sbjct: 257 APLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLTRLQVDSAEYSCLKAIALFS 312
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 70/112 (62%), Gaps = 11/112 (9%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGRVPP S P + P G S A G++G S +S IS LLR
Sbjct: 122 AVQRGRVPPQPSLSPS-ITP------LGGSSGLAGEFYNNNNGVSGGSQPVSELISQLLR 174
Query: 239 AEPYPTARY----SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP +RY SQ P+N MGIDNICELAARLLFS VEWARNIP+FP+L
Sbjct: 175 AEPYPGSRYGHQYSQQSGPDNAMGIDNICELAARLLFSIVEWARNIPYFPEL 226
>gi|47086055|ref|NP_998404.1| nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
gi|40807068|gb|AAH65332.1| Nuclear receptor subfamily 2, group F, member 6b [Danio rerio]
Length = 404
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/152 (65%), Positives = 116/152 (76%), Gaps = 7/152 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFS +EWARNIP+FPDL V++QVALLRL WSELF+LNA+Q ++PLH
Sbjct: 197 MGIDNICELAARLLFSTIEWARNIPYFPDLPVSEQVALLRLSWSELFILNAAQSALPLHT 256
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAG H+SPM ADRVV+FMD +RVFQ+QV+KL L VDS EYSCLKAI LF+
Sbjct: 257 APLLAAAGFHSSPMPADRVVSFMDQVRVFQDQVDKLTRLQVDSVEYSCLKAIALFSPD-- 314
Query: 121 IFTGVLLKALHVDSAEYSCLKAIVLFTTGKRM 152
L HV+S + KA V T +RM
Sbjct: 315 --ACGLSDPAHVESLQE---KAQVALTEYERM 341
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 72/114 (63%), Gaps = 15/114 (13%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP+ + G+ P A++ + A NG +S IS LLR
Sbjct: 122 AVQRGRIPPSHA----GISP---ASMVGAGGDVGGGPGMGADFFNGQP--VSELISQLLR 172
Query: 239 AEPYPTARY-SQCMQP-----NNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP +RY +QC Q +++MGIDNICELAARLLFS +EWARNIP+FPDL
Sbjct: 173 AEPYPNSRYGAQCGQQLQGANSSMMGIDNICELAARLLFSTIEWARNIPYFPDL 226
>gi|52345586|ref|NP_001004841.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
gi|49250456|gb|AAH74651.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus (Silurana)
tropicalis]
Length = 389
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/117 (76%), Positives = 106/117 (90%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFS VEW+RNIP+FP+L + DQV+LLRL WSELFVL+A+Q ++PLH+
Sbjct: 182 MGIDNICELAARLLFSTVEWSRNIPYFPELAMADQVSLLRLSWSELFVLSAAQSALPLHM 241
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAG HASPM+ADRVV+FMD IR+FQ+QVEKL L VDSAEY+CLKAI LFT+
Sbjct: 242 APLLAAAGFHASPMSADRVVSFMDQIRLFQDQVEKLNRLQVDSAEYACLKAIALFTS 298
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 67/109 (61%), Gaps = 21/109 (19%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP S SAS SA A NG +S IS LLR
Sbjct: 123 AVQRGRIPPAHS------------------SASPTSAPGAGEYFNGQP--VSELISQLLR 162
Query: 239 AEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP +RY SQ Q ++MGIDNICELAARLLFS VEW+RNIP+FP+L
Sbjct: 163 AEPYPASRYGSQYAQQGSVMGIDNICELAARLLFSTVEWSRNIPYFPEL 211
>gi|410949022|ref|XP_003981224.1| PREDICTED: COUP transcription factor 1, partial [Felis catus]
Length = 335
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 91/108 (84%), Positives = 98/108 (90%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 138 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 197
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSC 108
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLK +C
Sbjct: 198 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKXXXXXXXXXAC 245
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 53 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 102
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 103 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 152
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 153 SAVEWARNIPFFPDLQ 168
>gi|47217403|emb|CAG00763.1| unnamed protein product [Tetraodon nigroviridis]
Length = 432
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 87/118 (73%), Positives = 107/118 (90%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGID+ICELAARLLFS +EWARNIP+FP+L V++QVALLRL WSELF+LNA+Q S+P+H+
Sbjct: 199 MGIDSICELAARLLFSTIEWARNIPYFPELPVSEQVALLRLSWSELFILNAAQSSLPIHM 258
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
APLLAAAG H+SPM+A+RVV+FMD +RVFQ+QV+KL L VD+AEYSCLKAI LF+ G
Sbjct: 259 APLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLNRLQVDTAEYSCLKAIALFSPG 316
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 65/117 (55%), Gaps = 19/117 (16%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP+ G+ P A + NG +S IS LLR
Sbjct: 122 AVQRGRIPPSHQ----GISPNSLPGGV----GGAVPGPMGPDYFNGQP--VSELISQLLR 171
Query: 239 AEPYPTARYS-----QCMQPNN----IMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP +RY MQ + +MGID+ICELAARLLFS +EWARNIP+FP+L
Sbjct: 172 AEPYPVSRYGAPYGQTQMQGSAGGAPVMGIDSICELAARLLFSTIEWARNIPYFPEL 228
>gi|348515163|ref|XP_003445109.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oreochromis niloticus]
Length = 407
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 97/152 (63%), Positives = 119/152 (78%), Gaps = 7/152 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGID+ICELAARLLFS +EWARNIP+FP+L V++QVALLRL WSELF+LNA+Q ++PLH+
Sbjct: 200 MGIDSICELAARLLFSTIEWARNIPYFPELPVSEQVALLRLSWSELFILNAAQSALPLHM 259
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAG H+SPM+A+RVV+FMD +RVFQ+QVEKL L VDSAEYSCLKAI LF+
Sbjct: 260 APLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVEKLNRLQVDSAEYSCLKAIALFSPD-- 317
Query: 121 IFTGVLLKALHVDSAEYSCLKAIVLFTTGKRM 152
L HV+S + KA V T +R+
Sbjct: 318 --ACGLTDPAHVESLQE---KAQVALTEYERL 344
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 70/117 (59%), Gaps = 19/117 (16%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP+ S G+ P A G A I A NG +S IS LLR
Sbjct: 123 AVQRGRIPPSHS----GISPNSLA----GGVAGVVPGHIGADYFNGQP--VSELISQLLR 172
Query: 239 AEPYPTARYSQ-----CMQPN----NIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP +RY MQ + ++MGID+ICELAARLLFS +EWARNIP+FP+L
Sbjct: 173 AEPYPPSRYGAPYGQAQMQASASGASVMGIDSICELAARLLFSTIEWARNIPYFPEL 229
>gi|148233922|ref|NP_001080181.1| nuclear receptor subfamily 2, group F, member 6 [Xenopus laevis]
gi|33416678|gb|AAH56043.1| Nr2f6 protein [Xenopus laevis]
Length = 389
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 89/117 (76%), Positives = 106/117 (90%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFS VEW+R+IP+FP+L V DQV+LLRL WSELFVL+A+Q ++PLH+
Sbjct: 182 MGIDNICELAARLLFSTVEWSRSIPYFPELAVADQVSLLRLSWSELFVLSAAQSALPLHM 241
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAG H+SPM+ADRVV+FMD IR+FQ+QVEKL L VDSAEY+CLKAI LFT+
Sbjct: 242 APLLAAAGFHSSPMSADRVVSFMDQIRLFQDQVEKLNRLQVDSAEYACLKAIALFTS 298
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 67/109 (61%), Gaps = 21/109 (19%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP S SAS SA A NG +S IS LLR
Sbjct: 123 AVQRGRIPPAHS------------------SASPTSAPGAGEYFNGQP--VSELISQLLR 162
Query: 239 AEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP +RY SQ Q ++MGIDNICELAARLLFS VEW+R+IP+FP+L
Sbjct: 163 AEPYPASRYGSQYTQQGSVMGIDNICELAARLLFSTVEWSRSIPYFPEL 211
>gi|432854604|ref|XP_004067983.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Oryzias latipes]
Length = 406
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/152 (63%), Positives = 119/152 (78%), Gaps = 7/152 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGID+ICELAARLLFS +EWARNIP+FP+L V++QVALLRL WSELF+LNA+Q ++PLH+
Sbjct: 199 MGIDSICELAARLLFSTIEWARNIPYFPELPVSEQVALLRLSWSELFILNAAQSALPLHM 258
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAG H+SPM+A+RVV+FMD +RVFQ+QV+KL L VDSAEYSCLKAI LF+
Sbjct: 259 APLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLNRLQVDSAEYSCLKAIALFSPD-- 316
Query: 121 IFTGVLLKALHVDSAEYSCLKAIVLFTTGKRM 152
L HV+S + KA V T +R+
Sbjct: 317 --ACGLTDPAHVESLQE---KAQVALTEYERL 343
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 71/117 (60%), Gaps = 19/117 (16%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP+ S G+ P + G S + A NG +S IS LLR
Sbjct: 122 AVQRGRIPPSHS----GISPNSLSGGVGGTGPSH----MGADYFNGQQ--VSELISQLLR 171
Query: 239 AEPYPTARYSQ-----CMQPN----NIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP++RY MQ + ++MGID+ICELAARLLFS +EWARNIP+FP+L
Sbjct: 172 AEPYPSSRYGAPYAQAQMQASASGTSVMGIDSICELAARLLFSTIEWARNIPYFPEL 228
>gi|410929439|ref|XP_003978107.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Takifugu rubripes]
Length = 406
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/116 (74%), Positives = 106/116 (91%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGID+ICELAARLLFS +EWARNIP+FP+L V++QVALLRL WSELF+LNA+Q S+P+H+
Sbjct: 199 MGIDSICELAARLLFSTIEWARNIPYFPELPVSEQVALLRLSWSELFILNAAQSSLPVHM 258
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAG H+SPM+A+RVV+FMD +RVFQ+QV+KL L VD+AEYSCLKAI LF+
Sbjct: 259 APLLAAAGFHSSPMSAERVVSFMDQVRVFQDQVDKLNRLQVDTAEYSCLKAIALFS 314
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 66/117 (56%), Gaps = 19/117 (16%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP+Q G+ P + + NG +S IS LLR
Sbjct: 122 AVQRGRIPPSQQ----GISPNSLPGGV----GAGVPGHMGPDFFNGQP--VSELISQLLR 171
Query: 239 AEPYPTARY-----SQCMQPNN----IMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP +RY MQ + +MGID+ICELAARLLFS +EWARNIP+FP+L
Sbjct: 172 AEPYPVSRYGAPYGQTQMQGSAGGAPVMGIDSICELAARLLFSTIEWARNIPYFPEL 228
>gi|56090166|ref|NP_991120.1| nuclear receptor subfamily 2, group F, member 6 [Danio rerio]
gi|40807137|gb|AAH65330.1| Nuclear receptor subfamily 2, group F, member 6a [Danio rerio]
Length = 402
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/150 (64%), Positives = 117/150 (78%), Gaps = 7/150 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
ID+ICELAARLLFS +EWARNIP+FP+L V++QVALLRL WSELF+LNA+Q ++PLH+AP
Sbjct: 197 IDSICELAARLLFSIIEWARNIPYFPELPVSEQVALLRLSWSELFILNAAQSALPLHMAP 256
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LLAAAG H+SPM+A+RVV+FMD +RVFQ+QVEKL L VDSAEYSCLKAI LF+
Sbjct: 257 LLAAAGFHSSPMSAERVVSFMDQVRVFQDQVEKLTRLQVDSAEYSCLKAIALFSPD---- 312
Query: 123 TGVLLKALHVDSAEYSCLKAIVLFTTGKRM 152
L HV+S + KA V T +RM
Sbjct: 313 ACGLTDPAHVESLQE---KAQVALTEYERM 339
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 46/68 (67%), Gaps = 12/68 (17%)
Query: 229 LSSYISLLLRAEPYPTARYSQCMQPNNIMG----------IDNICELAARLLFSAVEWAR 278
+S IS LLRAEPYP +RYS Q N M ID+ICELAARLLFS +EWAR
Sbjct: 159 VSELISQLLRAEPYPNSRYSH--QYNQQMQGGGGGGSGMGIDSICELAARLLFSIIEWAR 216
Query: 279 NIPFFPDL 286
NIP+FP+L
Sbjct: 217 NIPYFPEL 224
>gi|20806167|ref|NP_620813.1| nuclear receptor subfamily 2 group F member 6 [Rattus norvegicus]
gi|10720384|sp|O09017.1|NR2F6_RAT RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUPg; AltName: Full=Ovalbumin upstream
promoter gamma nuclear receptor; AltName:
Full=V-erbA-related protein 2; Short=EAR-2
gi|2197123|gb|AAB61296.1| ovalbumin upstream promoter gamma nuclear receptor rCOUPg [Rattus
norvegicus]
Length = 390
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 97/116 (83%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L DQV LLRL WSELFVLNA+Q +PLH
Sbjct: 184 LGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVGLLRLSWSELFVLNAAQAPVPLHT 243
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA PMAA+R VAFMD +R FQEQV+KL L VD+AEY CLKAI LFT
Sbjct: 244 APLLAAAGLHAGPMAAERAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFT 299
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 212 AASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLL 270
AA + AAG+ + +S I+ LLRAEPYP A ++GIDN+CELAARLL
Sbjct: 140 AACSPPGAAGVEPFAGPPVSELIAQLLRAEPYPAAGRFGGG--GAVLGIDNVCELAARLL 197
Query: 271 FSAVEWARNIPFFPDL 286
FS VEWAR+ PFFP+L
Sbjct: 198 FSTVEWARHAPFFPEL 213
>gi|313233664|emb|CBY09835.1| unnamed protein product [Oikopleura dioica]
Length = 490
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/116 (71%), Positives = 100/116 (86%), Gaps = 3/116 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG++++CELAARLLF AVEWAR IPFFP+LQ+TDQV +L+ W ELFVLNA+Q MPLHV
Sbjct: 231 MGVESVCELAARLLFCAVEWARQIPFFPELQITDQVNMLKHCWPELFVLNAAQSHMPLHV 290
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAG H S AD+V+ FMD +RVFQEQVEKLK+LH+DSAE++CLKAIVL +
Sbjct: 291 APLLAAAGFHNS---ADKVMNFMDQVRVFQEQVEKLKSLHIDSAEFTCLKAIVLLS 343
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 75/135 (55%), Gaps = 30/135 (22%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q+ GQFA L D
Sbjct: 152 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPGQNL-------GQFA-LPGPDF--- 200
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
L YLS +ISLLLRAEPYP RY+ + +MG++++CELAARLLF
Sbjct: 201 ---------LGSGPGYLSGFISLLLRAEPYP--RYNPT---SGLMGVESVCELAARLLFC 246
Query: 273 AVEWARNIPFFPDLQ 287
AVEWAR IPFFP+LQ
Sbjct: 247 AVEWARQIPFFPELQ 261
>gi|348556980|ref|XP_003464298.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Cavia porcellus]
Length = 396
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 89/116 (76%), Positives = 100/116 (86%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 189 LGIDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHT 248
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
A LLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 249 ASLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 304
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 61/108 (56%), Gaps = 14/108 (12%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P LPG P + S +A+ A G +S I+ LLR
Sbjct: 125 AVQRGRIP---HALPGAAPP---------TAGSPPGSALTAGGDAFPGPPVSELIAQLLR 172
Query: 239 AEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A ++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 173 AEPYPAAAGRFGG--GAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 218
>gi|431921971|gb|ELK19144.1| Nuclear receptor subfamily 2 group F member 6 [Pteropus alecto]
Length = 481
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 91/116 (78%), Positives = 101/116 (87%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFPDL V DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 274 LGIDNVCELAARLLFSTVEWARHAPFFPDLPVADQVALLRLSWSELFVLNAAQAALPLHT 333
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 334 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 389
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 67/117 (57%), Gaps = 12/117 (10%)
Query: 173 SSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSY 232
S AVQRGR+P + LPG + A ++G +A AA AA G +S
Sbjct: 196 SREKQRAVQRGRIPHS---LPGTV------AASSGSPPGSALAAAAAGGDLFPGQPVSEL 246
Query: 233 ISLLLRAEPYPTARYSQCMQPNN---IMGIDNICELAARLLFSAVEWARNIPFFPDL 286
I+ LLRAEPYP A ++GIDN+CELAARLLFS VEWAR+ PFFPDL
Sbjct: 247 IAQLLRAEPYPAAAGRFGASGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPDL 303
>gi|395847866|ref|XP_003796585.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Otolemur
garnettii]
Length = 410
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/116 (77%), Positives = 101/116 (87%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 203 LGIDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHT 262
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 263 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 318
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 65/119 (54%), Gaps = 22/119 (18%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P + LPG + A ++G +A AA G +S I+ LLR
Sbjct: 125 AVQRGRIPHS---LPGAV------ATSSGSPPGSALAATGGDLFPGQP--VSELIAQLLR 173
Query: 239 AEPYPTA-----------RYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A + ++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 174 AEPYPAAAGRFGASAAGAFGAGGGTTGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 232
>gi|344282642|ref|XP_003413082.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Loxodonta
africana]
Length = 408
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 90/116 (77%), Positives = 101/116 (87%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 201 LGIDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHT 260
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 261 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 316
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 66/117 (56%), Gaps = 21/117 (17%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLL 237
AVQRGR+P + LPG GP S S +A+AAAG + +S I+ LL
Sbjct: 126 AVQRGRIPHS---LPGA-GPA--------SSGSPPGSALAAAGSDLFPGQPVSELIAQLL 173
Query: 238 RAEPYPTARYSQCMQPNN--------IMGIDNICELAARLLFSAVEWARNIPFFPDL 286
RAEPYP A ++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 174 RAEPYPAAGRFGAGAAGAFGPGGAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 230
>gi|358412829|ref|XP_002704762.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
gi|359066798|ref|XP_002688591.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Bos
taurus]
Length = 412
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/116 (77%), Positives = 101/116 (87%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 205 LGIDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHT 264
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 265 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 320
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 64/120 (53%), Gaps = 24/120 (20%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLL 237
AVQRGR+P + LPG + S S +A+A AG + +S I+ LL
Sbjct: 127 AVQRGRIPHS---LPGTVA---------ASSGSPPGSALAVAGGDLFPGQPVSELIAQLL 174
Query: 238 RAEPYPTARYSQCMQPNN-----------IMGIDNICELAARLLFSAVEWARNIPFFPDL 286
RAEPYP A ++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 175 RAEPYPAAAGRFGAGAAGAFGAGSGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 234
>gi|311249241|ref|XP_003123537.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Sus
scrofa]
Length = 414
Score = 164 bits (414), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 90/116 (77%), Positives = 101/116 (87%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 207 LGIDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHT 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 267 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 322
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 65/120 (54%), Gaps = 24/120 (20%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLL 237
AVQRGR+P + LPG + S S +A+AAAG + +S I+ LL
Sbjct: 129 AVQRGRIPHS---LPGAVA---------ASSGSPPGSALAAAGGDLFPGQPVSELIAQLL 176
Query: 238 RAEPYPTARYSQCMQPNN-----------IMGIDNICELAARLLFSAVEWARNIPFFPDL 286
RAEPYP A ++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 177 RAEPYPAAAGRFGAGAAGAFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 236
>gi|73986038|ref|XP_852412.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 isoform 1
[Canis lupus familiaris]
Length = 416
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 90/116 (77%), Positives = 101/116 (87%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 209 LGIDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHT 268
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 269 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 324
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 65/119 (54%), Gaps = 21/119 (17%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P + LPG + A ++G +A AA A L +S I+ LLR
Sbjct: 130 AVQRGRIPHS---LPGAV------AASSGSPPGSALAAAAGGDLFPGQP-VSELIAQLLR 179
Query: 239 AEPYPTARYSQCMQPNN-----------IMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A ++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 180 AEPYPAAAGRFGAGAAGAFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 238
>gi|355707900|gb|AES03100.1| nuclear receptor subfamily 2, group F, member 6 [Mustela putorius
furo]
Length = 214
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 90/116 (77%), Positives = 101/116 (87%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 8 LGIDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHT 67
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 68 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 123
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/31 (77%), Positives = 29/31 (93%)
Query: 256 IMGIDNICELAARLLFSAVEWARNIPFFPDL 286
++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 7 VLGIDNVCELAARLLFSTVEWARHAPFFPEL 37
>gi|402904691|ref|XP_003915174.1| PREDICTED: Usher syndrome type-1C protein-binding protein 1 [Papio
anubis]
Length = 952
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 89/114 (78%), Positives = 99/114 (86%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
IDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH AP
Sbjct: 747 IDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAP 806
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 807 LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 860
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 61/111 (54%), Gaps = 12/111 (10%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P LPG + A ++G +A AA+ G +S I+ LLR
Sbjct: 673 AVQRGRIP---HSLPGAV------ATSSGSPPGSALAAVGGGGDLFPGQPVSELIAQLLR 723
Query: 239 AEPYPTARYSQCMQPNNIMG---IDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A IDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 724 AEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 774
>gi|296486096|tpg|DAA28209.1| TPA: nuclear receptor subfamily 2, group F, member 6-like [Bos
taurus]
Length = 383
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/116 (77%), Positives = 101/116 (87%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 176 LGIDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHT 235
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 236 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 291
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 64/120 (53%), Gaps = 24/120 (20%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLL 237
AVQRGR+P + LPG + S S +A+A AG + +S I+ LL
Sbjct: 98 AVQRGRIPHS---LPGTVA---------ASSGSPPGSALAVAGGDLFPGQPVSELIAQLL 145
Query: 238 RAEPYPTARYSQCMQPNN-----------IMGIDNICELAARLLFSAVEWARNIPFFPDL 286
RAEPYP A ++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 146 RAEPYPAAAGRFGAGAAGAFGAGSGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 205
>gi|297276426|ref|XP_001114305.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
isoform 1 [Macaca mulatta]
Length = 404
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/114 (78%), Positives = 99/114 (86%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
IDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH AP
Sbjct: 199 IDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAP 258
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 259 LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 312
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 62/111 (55%), Gaps = 12/111 (10%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P + LPG + A ++G +A AA+ G +S I+ LLR
Sbjct: 125 AVQRGRIPHS---LPGAV------ATSSGSPPGSALAAVGGGGDLFPGQPVSELIAQLLR 175
Query: 239 AEPYPTARYSQCMQPNNIMG---IDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A IDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 176 AEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 226
>gi|387541468|gb|AFJ71361.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 404
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/114 (78%), Positives = 99/114 (86%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
IDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH AP
Sbjct: 199 IDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAP 258
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 259 LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 312
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 62/111 (55%), Gaps = 12/111 (10%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P + LPG + A ++G +A AA+ G +S I+ LLR
Sbjct: 125 AVQRGRIPHS---LPGAV------ATSSGSPPGSALAAVGGGGDLFPGQPVSELIAQLLR 175
Query: 239 AEPYPTARYSQCMQPNNIMG---IDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A IDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 176 AEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 226
>gi|74145119|dbj|BAE27426.1| unnamed protein product [Mus musculus]
Length = 390
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/116 (75%), Positives = 100/116 (86%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 184 LGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHT 243
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VD+AEY CLKAI LFT
Sbjct: 244 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFT 299
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 60/109 (55%), Gaps = 22/109 (20%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLL 237
AVQRGR+P LPG AA + A G+ + +S I+ LL
Sbjct: 126 AVQRGRIP---HALPG----------------PAACSPPGATGVEPFTGPPVSELIAQLL 166
Query: 238 RAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
RAEPYP A ++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 167 RAEPYPAAGRFGGG--GAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 213
>gi|482930|emb|CAA54097.1| EAR2 [Mus musculus]
Length = 390
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/116 (75%), Positives = 100/116 (86%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 184 LGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHT 243
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VD+AEY CLKAI LFT
Sbjct: 244 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFT 299
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 60/109 (55%), Gaps = 22/109 (20%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLL 237
AVQRGR+P LPG AA + A G+ + +S I+ LL
Sbjct: 126 AVQRGRIP---HALPG----------------PAACSPPGATGVEPFTGPPVSELIAQLL 166
Query: 238 RAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
RAEPYP A ++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 167 RAEPYPAAGRFGGG--GAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 213
>gi|20070199|ref|NP_005225.2| nuclear receptor subfamily 2 group F member 6 [Homo sapiens]
gi|23503053|sp|P10588.2|NR2F6_HUMAN RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=V-erbA-related protein 2; Short=EAR-2
gi|119604986|gb|EAW84580.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127798390|gb|AAH02669.3| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799092|gb|AAH63018.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|127799948|gb|AAH84544.2| Nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
gi|189054615|dbj|BAG37465.1| unnamed protein product [Homo sapiens]
gi|208966888|dbj|BAG73458.1| nuclear receptor subfamily 2, group F, member 6 [synthetic
construct]
gi|325495513|gb|ADZ17362.1| nuclear receptor V-erbA-related [Homo sapiens]
Length = 404
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/114 (78%), Positives = 99/114 (86%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
IDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH AP
Sbjct: 199 IDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAP 258
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 259 LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 312
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 64/111 (57%), Gaps = 12/111 (10%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P + LPG + A ++G +A AA+A+ G +S I+ LLR
Sbjct: 125 AVQRGRIPHS---LPGAV------AASSGSPPGSALAAVASGGDLFPGQPVSELIAQLLR 175
Query: 239 AEPYPTARYSQCMQPNNIMG---IDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A IDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 176 AEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 226
>gi|112807199|ref|NP_034280.2| nuclear receptor subfamily 2 group F member 6 [Mus musculus]
gi|341941192|sp|P43136.2|NR2F6_MOUSE RecName: Full=Nuclear receptor subfamily 2 group F member 6;
AltName: Full=COUP transcription factor 3;
Short=COUP-TF3; AltName: Full=V-erbA-related protein 2;
Short=EAR-2
gi|14198162|gb|AAH08138.1| Nuclear receptor subfamily 2, group F, member 6 [Mus musculus]
gi|74143003|dbj|BAE42523.1| unnamed protein product [Mus musculus]
gi|74203464|dbj|BAE20887.1| unnamed protein product [Mus musculus]
gi|148696964|gb|EDL28911.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_b [Mus
musculus]
Length = 390
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/116 (75%), Positives = 100/116 (86%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 184 LGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHT 243
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VD+AEY CLKAI LFT
Sbjct: 244 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFT 299
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 60/109 (55%), Gaps = 22/109 (20%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLL 237
AVQRGR+P LPG AA + A G+ + +S I+ LL
Sbjct: 126 AVQRGRIP---HALPG----------------PAACSPPGATGVEPFTGPPVSELIAQLL 166
Query: 238 RAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
RAEPYP A ++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 167 RAEPYPAAGRFGGG--GAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 213
>gi|296233223|ref|XP_002761927.1| PREDICTED: nuclear receptor subfamily 2 group F member 6
[Callithrix jacchus]
Length = 386
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/114 (78%), Positives = 99/114 (86%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
IDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH AP
Sbjct: 181 IDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAP 240
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 241 LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 294
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 63/111 (56%), Gaps = 12/111 (10%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P + LPG + A ++G +A AA+A G +S I+ LLR
Sbjct: 107 AVQRGRIPHS---LPGSV------AASSGSPPGSALAAVAGGGDLFPGQPVSELIAQLLR 157
Query: 239 AEPYPTARYSQCMQPNNIMG---IDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A IDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 158 AEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 208
>gi|114675979|ref|XP_001173294.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Pan
troglodytes]
gi|410209646|gb|JAA02042.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410259260|gb|JAA17596.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410296550|gb|JAA26875.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
gi|410337621|gb|JAA37757.1| nuclear receptor subfamily 2, group F, member 6 [Pan troglodytes]
Length = 404
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 89/114 (78%), Positives = 99/114 (86%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
IDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH AP
Sbjct: 199 IDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAP 258
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 259 LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 312
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 63/111 (56%), Gaps = 12/111 (10%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P + LPG + A +G +A AA+A+ G +S I+ LLR
Sbjct: 125 AVQRGRIPHS---LPGAV------AAASGSPPGSALAAVASGGDLFPGQPVSELIAQLLR 175
Query: 239 AEPYPTARYSQCMQPNNIMG---IDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A IDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 176 AEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 226
>gi|240978308|ref|XP_002402922.1| coup transcription factor, putative [Ixodes scapularis]
gi|215491246|gb|EEC00887.1| coup transcription factor, putative [Ixodes scapularis]
Length = 226
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/110 (77%), Positives = 91/110 (82%), Gaps = 14/110 (12%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGRVPP Q GGL PGQ + LTNGD+A+AA LNGHS YLSS+ISLLLR
Sbjct: 49 AVQRGRVPPTQH---GGL-PGQMS-LTNGDAAAAA--------LNGHS-YLSSFISLLLR 94
Query: 239 AEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQH 288
AEPYP +RY+QCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 95 AEPYPPSRYAQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQR 144
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 94/119 (78%), Gaps = 13/119 (10%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWARNIPFFPDLQ R V +E + +
Sbjct: 113 MGIDNICELAARLLFSAVEWARNIPFFPDLQ--------RTVRAERVPVLDAA-----AR 159
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
LLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVD+AEYSCLKAIVLFTTG+
Sbjct: 160 GALLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDAAEYSCLKAIVLFTTGE 218
>gi|302563813|ref|NP_001181753.1| nuclear receptor subfamily 2 group F member 6 [Macaca mulatta]
Length = 377
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/114 (78%), Positives = 99/114 (86%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
IDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH AP
Sbjct: 172 IDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAP 231
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 232 LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 285
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 62/111 (55%), Gaps = 12/111 (10%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P + LPG + A ++G +A AA+ G +S I+ LLR
Sbjct: 98 AVQRGRIPHS---LPGAV------ATSSGSPPGSALAAVGGGGDLFPGQPVSELIAQLLR 148
Query: 239 AEPYPTARYSQCMQPNNIMG---IDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A IDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 149 AEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 199
>gi|324512063|gb|ADY45006.1| Steroid receptor seven-up, isoform B/C [Ascaris suum]
Length = 417
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 77/117 (65%), Positives = 98/117 (83%), Gaps = 1/117 (0%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NI EL A+LLFSAVEWA+NIPFF +L +DQ+ LLR W+ELFV+NA+Q MP+H
Sbjct: 204 MGIENIYELGAKLLFSAVEWAKNIPFFGELIESDQLTLLRASWAELFVVNAAQFGMPVHA 263
Query: 61 APLLAAAGLHA-SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAA+ LH+ SP+ DR+V FMD IRVFQ QVE+LK+LH+DSAE+S LKA++LF+
Sbjct: 264 APLLAASVLHSTSPLPPDRLVLFMDRIRVFQGQVERLKSLHMDSAEFSSLKAVILFS 320
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 64/108 (59%), Gaps = 20/108 (18%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PPN S P + L GD+ + + S++ S+ ++ L+R
Sbjct: 146 AVQRGRIPPN-SQHPYA------STLLFGDNLLSMTQP--------SSTHFSNVVAHLVR 190
Query: 239 AEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP S + IMGI+NI EL A+LLFSAVEWA+NIPFF +L
Sbjct: 191 AEPYPPTNCS-----STIMGIENIYELGAKLLFSAVEWAKNIPFFGEL 233
>gi|194384988|dbj|BAG60906.1| unnamed protein product [Homo sapiens]
Length = 377
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 89/114 (78%), Positives = 99/114 (86%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
IDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH AP
Sbjct: 172 IDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAP 231
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 232 LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 285
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 64/111 (57%), Gaps = 12/111 (10%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P + LPG + A ++G +A AA+A+ G +S I+ LLR
Sbjct: 98 AVQRGRIPHS---LPGAV------AASSGSPPGSALAAVASGGDLFPGQPVSELIAQLLR 148
Query: 239 AEPYPTARYSQCMQPNNIMG---IDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A IDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 149 AEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 199
>gi|148696965|gb|EDL28912.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_c [Mus
musculus]
Length = 241
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/116 (75%), Positives = 100/116 (86%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 126 LGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHT 185
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VD+AEY CLKAI LFT
Sbjct: 186 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFT 241
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 60/111 (54%), Gaps = 22/111 (19%)
Query: 177 STAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISL 235
AVQRGR+P LPG AA + A G+ + +S I+
Sbjct: 66 KEAVQRGRIP---HALPG----------------PAACSPPGATGVEPFTGPPVSELIAQ 106
Query: 236 LLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
LLRAEPYP A ++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 107 LLRAEPYPAAGRFGGG--GAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 155
>gi|402590411|gb|EJW84341.1| hypothetical protein WUBG_04747 [Wuchereria bancrofti]
Length = 537
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/117 (63%), Positives = 96/117 (82%), Gaps = 1/117 (0%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+G+DNI E A+LLFSAVEWA+NIPFF +L TDQ+ LLR W+ELFV+NA+Q MP+HV
Sbjct: 324 IGMDNIYEFGAKLLFSAVEWAKNIPFFNELNDTDQLTLLRASWAELFVVNAAQFGMPVHV 383
Query: 61 APLLAAAGLHAS-PMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAA+GLH+S P+ D++V FMD IRVFQ Q+E+LKAL +D AE+ LKA++LF+
Sbjct: 384 APLLAASGLHSSPPLPTDQLVVFMDRIRVFQGQIERLKALQMDLAEFCSLKAVILFS 440
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 24/111 (21%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTN---GDSASAASAAIAAAGLNGHSSYLSSYISL 235
AVQRGR+PPN Q A + G+ A S ++ S+ SS ++
Sbjct: 264 AVQRGRIPPN----------AQHAYSSTVLFGEQLLAVSQSVG--------SHFSSIVTH 305
Query: 236 LLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L+ AEPYP + C ++ +G+DNI E A+LLFSAVEWA+NIPFF +L
Sbjct: 306 LIHAEPYPP---TACSSSSSSIGMDNIYEFGAKLLFSAVEWAKNIPFFNEL 353
>gi|170587670|ref|XP_001898597.1| Steroid receptor seven-up type 2 [Brugia malayi]
gi|158593867|gb|EDP32461.1| Steroid receptor seven-up type 2, putative [Brugia malayi]
Length = 530
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/117 (63%), Positives = 96/117 (82%), Gaps = 1/117 (0%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+G+DNI E A+LLFSAVEWA+NIPFF +L TDQ+ LLR W+ELFV+NA+Q MP+HV
Sbjct: 317 IGMDNIYEFGAKLLFSAVEWAKNIPFFNELSDTDQLTLLRASWAELFVINAAQFGMPVHV 376
Query: 61 APLLAAAGLHAS-PMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAA+GLH+S P+ D++V FMD IRVFQ Q+E+LKAL +D AE+ LKA++LF+
Sbjct: 377 APLLAASGLHSSPPLPTDQLVVFMDRIRVFQGQIERLKALQMDLAEFCSLKAVILFS 433
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 18/108 (16%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PPN + + G+ + ++ S++SS ++ L+
Sbjct: 257 AVQRGRIPPNAQ-------HAYSSTVLFGEQLLTVNQSVG--------SHVSSIVTHLIH 301
Query: 239 AEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP C ++ +G+DNI E A+LLFSAVEWA+NIPFF +L
Sbjct: 302 AEPYPPI---ACSSSSSSIGMDNIYEFGAKLLFSAVEWAKNIPFFNEL 346
>gi|312065719|ref|XP_003135926.1| hypothetical protein LOAG_00338 [Loa loa]
gi|307768898|gb|EFO28132.1| hypothetical protein LOAG_00338 [Loa loa]
Length = 212
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/116 (63%), Positives = 95/116 (81%), Gaps = 1/116 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+DNI E A+LLFSAVEWA+NIPFF +L TDQ+ LLR W+ELFV+NA+Q MP+HVAP
Sbjct: 1 MDNIYEFGAKLLFSAVEWAKNIPFFNELSDTDQLTLLRASWAELFVVNAAQFGMPVHVAP 60
Query: 63 LLAAAGLHAS-PMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
LLAA+GLH+S P+ D++V FMD IRVFQ Q+E+LKAL +DSAE+ LKA++LF+
Sbjct: 61 LLAASGLHSSPPLPTDQLVVFMDRIRVFQGQIERLKALQMDSAEFCSLKAVILFSV 116
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/28 (71%), Positives = 24/28 (85%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+DNI E A+LLFSAVEWA+NIPFF +L
Sbjct: 1 MDNIYEFGAKLLFSAVEWAKNIPFFNEL 28
>gi|31065|emb|CAA31282.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/114 (76%), Positives = 98/114 (85%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
IDN+CELAARLLFS VEWAR+ FFP+L V DQVALLR+ WSELFVLNA+Q ++PLH AP
Sbjct: 199 IDNVCELAARLLFSTVEWARH-GFFPELPVADQVALLRMSWSELFVLNAAQAALPLHTAP 257
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 258 LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 311
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 63/111 (56%), Gaps = 13/111 (11%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P + LPG + A ++G +A AA+A+ G +S I+ LLR
Sbjct: 125 AVQRGRIPHS---LPGAV------AASSGSPPGSALAAVASGGDLFPGQPVSELIAQLLR 175
Query: 239 AEPYPTARYSQCMQPNNIMG---IDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A IDN+CELAARLLFS VEWAR+ FFP+L
Sbjct: 176 AEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARH-GFFPEL 225
>gi|216409732|dbj|BAH02303.1| nuclear receptor subfamily 2, group F, member 6 [Homo sapiens]
Length = 401
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/114 (76%), Positives = 98/114 (85%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
IDN+CELAARLLFS VEWAR+ FFP+L V DQVALLR+ WSELFVLNA+Q ++PLH AP
Sbjct: 197 IDNVCELAARLLFSTVEWARH-GFFPELPVADQVALLRMSWSELFVLNAAQAALPLHTAP 255
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 256 LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 309
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 63/111 (56%), Gaps = 13/111 (11%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P + LPG + A ++G +A AA+A+ G +S I+ LLR
Sbjct: 123 AVQRGRIPHS---LPGAV------AASSGSPPGSALAAVASGGDLFPGQPVSELIAQLLR 173
Query: 239 AEPYPTARYSQCMQPNNIMG---IDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A IDN+CELAARLLFS VEWAR+ FFP+L
Sbjct: 174 AEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARH-GFFPEL 223
>gi|557698|gb|AAC52314.1| COUP-TFI, partial [Rattus norvegicus]
Length = 129
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 12 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 61
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 62 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 111
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 112 SAVEWARNIPFFPDLQ 127
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/33 (93%), Positives = 33/33 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVT 33
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+T
Sbjct: 97 MGIENICELAARLLFSAVEWARNIPFFPDLQIT 129
>gi|355750064|gb|EHH54402.1| COUP transcription factor 1, partial [Macaca fascicularis]
Length = 269
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/110 (71%), Positives = 83/110 (75%), Gaps = 21/110 (19%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP Q PGQ+A LTNGD LNGH YLS YISLLLR
Sbjct: 1 AVQRGRMPPTQP------NPGQYA-LTNGDP------------LNGHC-YLSGYISLLLR 40
Query: 239 AEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
AEPYPT+RY SQCMQPNNIMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 41 AEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 90
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/52 (90%), Positives = 51/52 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNAS 52
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+
Sbjct: 60 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAA 111
>gi|409758|gb|AAA37532.1| transcription factor [Mus musculus]
Length = 389
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/116 (71%), Positives = 97/116 (83%), Gaps = 1/116 (0%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAAR + S VEWAR+ PFFP+L DQVALLRL WSELFVLNA+Q ++ +H
Sbjct: 184 LGIDNVCELAARAV-STVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAAVAVHT 242
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VD+AEY CLKAI LFT
Sbjct: 243 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFT 298
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 58/109 (53%), Gaps = 23/109 (21%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLL 237
AVQRGR+P LPG AA + A G+ + +S I+ +L
Sbjct: 126 AVQRGRIP---HALPG----------------PAACSPPGATGVEHFTGPPVSELIAHVL 166
Query: 238 RAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
RAEPYP A ++GIDN+CELAAR + S VEWAR+ PFFP+L
Sbjct: 167 RAEPYPAAGRF--GGGGAVLGIDNVCELAARAV-STVEWARHAPFFPEL 212
>gi|351702932|gb|EHB05851.1| COUP transcription factor 1 [Heterocephalus glaber]
Length = 147
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/94 (79%), Positives = 82/94 (87%), Gaps = 1/94 (1%)
Query: 24 IPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHA-SPMAADRVVAF 82
IPFFPDLQ+TDQV+LLRL WSELF LNA+Q SMP HV PLLAAA SPM+ADRVVAF
Sbjct: 2 IPFFPDLQITDQVSLLRLTWSELFALNAAQRSMPRHVVPLLAAAAGLHASPMSADRVVAF 61
Query: 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
MDHIR+FQEQVE+LKALHVD AEYS LKA+VLFT
Sbjct: 62 MDHIRIFQEQVERLKALHVDWAEYSYLKAVVLFT 95
>gi|301753845|ref|XP_002912831.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6-like, partial [Ailuropoda melanoleuca]
Length = 323
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/114 (71%), Positives = 89/114 (78%), Gaps = 11/114 (9%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
IDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLN P
Sbjct: 129 IDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLN----------XP 178
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDS EY CLKAI LFT
Sbjct: 179 LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDS-EYGCLKAIALFT 231
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 26/28 (92%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
IDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 129 IDNVCELAARLLFSTVEWARHAPFFPEL 156
>gi|221120884|ref|XP_002159396.1| PREDICTED: COUP transcription factor 2-like [Hydra magnipapillata]
Length = 500
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/119 (55%), Positives = 94/119 (78%), Gaps = 5/119 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ IDN ELAARLLF+AVEW+RNIPFFP+L +TDQ+ALLRL W ELF+LN +QC M + V
Sbjct: 293 IDIDNY-ELAARLLFNAVEWSRNIPFFPNLSLTDQIALLRLCWKELFILNVAQCPMLIDV 351
Query: 61 APLL-AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
+ LL + ++ASP + + +F+D +R+ +EQ+ KL+A+HVD AE++CLKAIV+F++
Sbjct: 352 SHLLNSQMNIYASP---EHMASFLDQVRILKEQLNKLRAMHVDPAEFACLKAIVVFSSD 407
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 76/143 (53%), Gaps = 14/143 (9%)
Query: 150 KRMFGKPLPLNQHYTATIS-NVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNG- 207
K F + + N YT N + Q R+ + CL G+ A+ G
Sbjct: 187 KSFFKRSVRRNLQYTCRAKRNCSIDQHHRNQCQHCRL---KKCLKAGMRKD---AVQRGR 240
Query: 208 -DSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPN---NIMGIDNIC 263
+S A+ A +N S +LS +++LLLRAEP P RYSQ + N + + IDN
Sbjct: 241 LNSQQGAAQVFEDATVNNFS-FLSGFVTLLLRAEPCPIFRYSQGVSNNPQFDFIDIDNY- 298
Query: 264 ELAARLLFSAVEWARNIPFFPDL 286
ELAARLLF+AVEW+RNIPFFP+L
Sbjct: 299 ELAARLLFNAVEWSRNIPFFPNL 321
>gi|224587886|gb|ACN58733.1| Nuclear receptor subfamily 2 group F member 5 [Salmo salar]
Length = 178
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/92 (75%), Positives = 78/92 (84%), Gaps = 4/92 (4%)
Query: 45 ELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSA 104
ELFVLNA+QCSMPLHVAPLLAAAGLHASPM+A+RVVAFMDHIRVFQEQVEKLK L VD+A
Sbjct: 1 ELFVLNAAQCSMPLHVAPLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLKVLQVDTA 60
Query: 105 EYSCLKAIVLFTTGKRIFTGVLLKALHVDSAE 136
EYSCLK+IVLFT+ + V HV+S +
Sbjct: 61 EYSCLKSIVLFTSDAMGLSDV----AHVESIQ 88
>gi|397494017|ref|XP_003817891.1| PREDICTED: nuclear receptor subfamily 2 group F member 6, partial
[Pan paniscus]
Length = 429
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/114 (71%), Positives = 90/114 (78%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
IDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH AP
Sbjct: 224 IDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAP 283
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLAAAGLHA+PMAA+R EQV+KL L VDSAEY CLKAI LFT
Sbjct: 284 LLAAAGLHAAPMAAERXXXXXXXXXXXXEQVDKLGRLQVDSAEYGCLKAIALFT 337
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 236 LLRAEPYPTARYSQCMQPNNIMG---IDNICELAARLLFSAVEWARNIPFFPDL 286
LLRAEPYP A IDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 198 LLRAEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 251
>gi|408778249|gb|AFU91001.1| chicken ovalbumin upstream promoter-transcription factor, partial
[Potamopyrgus antipodarum]
Length = 90
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/108 (63%), Positives = 79/108 (73%), Gaps = 19/108 (17%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+PP+Q PG + A NGD LNGH+ YLSS+IS+LLR
Sbjct: 2 AVQRGRIPPSQHPFPGQM------AFPNGDP------------LNGHT-YLSSFISMLLR 42
Query: 239 AEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYPT+R+ CMQP NIMGI+NICELAARLLFSAVEWARNIPFFP+L
Sbjct: 43 AEPYPTSRFGNCMQPTNIMGIENICELAARLLFSAVEWARNIPFFPEL 90
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/30 (93%), Positives = 30/30 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDL 30
MGI+NICELAARLLFSAVEWARNIPFFP+L
Sbjct: 61 MGIENICELAARLLFSAVEWARNIPFFPEL 90
>gi|332253632|ref|XP_003275940.1| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nomascus
leucogenys]
Length = 366
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/99 (76%), Positives = 85/99 (85%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD 77
VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH APLLAAAGLHA+PMAA+
Sbjct: 176 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE 235
Query: 78 RVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 236 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 274
>gi|426228806|ref|XP_004008487.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
F member 6, partial [Ovis aries]
Length = 382
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 89/113 (78%), Gaps = 5/113 (4%)
Query: 9 LAARLLFSAVEWARNIPFFPDLQVTDQVAL-----LRLVWSELFVLNASQCSMPLHVAPL 63
LAARLLFS VEWAR+ PFFP+L D VA RL WSELFVLNA+Q ++PLH APL
Sbjct: 173 LAARLLFSTVEWARHAPFFPELPGADPVAPAARGGRRLSWSELFVLNAAQAALPLHTAPL 232
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 233 LAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 285
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 55/118 (46%), Gaps = 22/118 (18%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLL 237
AVQRGR+P + PG AA S S +A+A AG + +S I+ LL
Sbjct: 89 AVQRGRIPHSL--------PGTVAA----SSGSPPGSALAVAGGDLFPGQPVSELIAQLL 136
Query: 238 RAEPYPTARYSQCMQPNNIMGIDNICE---------LAARLLFSAVEWARNIPFFPDL 286
RA P P A G + LAARLLFS VEWAR+ PFFP+L
Sbjct: 137 RAGPSPAAAGRFGAGAAGAFGAGSGAAGAXXXXXXXLAARLLFSTVEWARHAPFFPEL 194
>gi|16797870|gb|AAL29193.1|AF323680_1 nuclear receptor Amtll [Acropora millepora]
Length = 380
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 78/112 (69%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
+CE AA+LLF +V+WARNIP F L DQV LL W ELFVL ASQ SMPL +AP+LA
Sbjct: 189 VCEAAAKLLFMSVKWARNIPSFMSLPFRDQVILLEEGWRELFVLGASQWSMPLEIAPILA 248
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
AAG+H + +V M +R+ QE V K KA +VDS EY+CLKAIVLF +
Sbjct: 249 AAGMHVDTTPPETIVDVMATVRLLQETVNKFKAANVDSTEYACLKAIVLFKS 300
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+CE AA+LLF +V+WARNIP F L R V
Sbjct: 189 VCEAAAKLLFMSVKWARNIPSFMSLPFRDQV 219
>gi|148696963|gb|EDL28910.1| nuclear receptor subfamily 2, group F, member 6, isoform CRA_a [Mus
musculus]
Length = 270
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/94 (76%), Positives = 83/94 (88%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 177 LGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHT 236
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVE 94
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+
Sbjct: 237 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVD 270
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 60/109 (55%), Gaps = 22/109 (20%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLL 237
AVQRGR+P LPG AA + A G+ + +S I+ LL
Sbjct: 119 AVQRGRIP---HALPG----------------PAACSPPGATGVEPFTGPPVSELIAQLL 159
Query: 238 RAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
RAEPYP A ++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 160 RAEPYPAAGRF--GGGGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 206
>gi|156376476|ref|XP_001630386.1| predicted protein [Nematostella vectensis]
gi|156217406|gb|EDO38323.1| predicted protein [Nematostella vectensis]
Length = 358
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 78/112 (69%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+++CE AA+LLF +V+WARNIP F L DQV LL W ELF+L ASQ SMPL +AP+
Sbjct: 164 ESVCEAAAKLLFMSVKWARNIPSFMSLPFRDQVILLEEGWRELFLLGASQWSMPLEIAPI 223
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LAA+G+H +++V M +R QE V K KA VDS E++CLKAIVLF
Sbjct: 224 LAASGMHVDNTPPEKIVDVMATVRTLQEAVNKFKAFGVDSTEFACLKAIVLF 275
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 230 SSYISLLLRAEP---------------YPTARYSQCMQ-PNNIMGIDNICELAARLLFSA 273
S +I+ LL AEP Y R M P +++CE AA+LLF +
Sbjct: 118 SGFINTLLAAEPRMDGCGMAVNDFDLEYKPIRLQSDMSVPMYYSSPESVCEAAAKLLFMS 177
Query: 274 VEWARNIPFFPDLQHRSGV 292
V+WARNIP F L R V
Sbjct: 178 VKWARNIPSFMSLPFRDQV 196
>gi|156387699|ref|XP_001634340.1| predicted protein [Nematostella vectensis]
gi|156221422|gb|EDO42277.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 88/126 (69%), Gaps = 14/126 (11%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G++N ELAARLL SAVEWA+NIPF+ DL + DQ LLR WSELF LNA+Q P H++
Sbjct: 159 GLENTPELAARLLVSAVEWAKNIPFYSDLPLPDQAVLLRSCWSELFTLNAAQHCSPFHIS 218
Query: 62 PLLAAAGLHASPMAAD-------RVVAFMD----HIRVFQEQVEKLKALHVDSAEYSCLK 110
P L + ++S A + RV++ D ++++F+EQVEKLK +H+DSAE++CLK
Sbjct: 219 PTLTS---NSSGFAGNGGGYLNTRVMSAFDCQNNNMKLFEEQVEKLKNMHIDSAEFACLK 275
Query: 111 AIVLFT 116
AIVLF
Sbjct: 276 AIVLFN 281
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 64/109 (58%), Gaps = 23/109 (21%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQ+GR+P +GP +++ +NGH S+ SSYI+LLLR
Sbjct: 101 AVQKGRIPSTHP----DVGP----------------LSVSMVEMNGHQSFYSSYITLLLR 140
Query: 239 AEPYPTARYSQCMQ-PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
A+ ARY Q + P NI G++N ELAARLL SAVEWA+NIPF+ DL
Sbjct: 141 ADT--IARYQQSLTLPCNINGLENTPELAARLLVSAVEWAKNIPFYSDL 187
>gi|328496564|gb|AEB21388.1| COUP-TF protein [Hydractinia echinata]
Length = 339
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 80/115 (69%), Gaps = 3/115 (2%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G N+CELA +LLF+A+EWA+NIP FP L DQ+AL++L W ELFVLN +C PL +
Sbjct: 127 GSQNMCELATKLLFNAIEWAKNIPIFPTLTTGDQIALIKLGWKELFVLNLGKCQSPLRLN 186
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L+ + L P + F +H++ Q Q++ LK+L +D+AEY+CLKA++LFT
Sbjct: 187 DVLSNSNLDGLP---EYQATFYEHVKALQTQIDTLKSLQIDAAEYACLKAMILFT 238
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDL 286
G N+CELA +LLF+A+EWA+NIP FP L
Sbjct: 127 GSQNMCELATKLLFNAIEWAKNIPIFPTL 155
>gi|405978560|gb|EKC42940.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 380
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 77/114 (67%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ +CE+AARLLF +V+WA+N+P F L DQV LL W ELFVL A+Q MP+ PL
Sbjct: 177 EAMCEVAARLLFMSVKWAKNVPAFLGLPFRDQVMLLEEGWRELFVLGAAQFQMPVEAGPL 236
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
LA AGL+ A++VV+FM IR QE + K K+L VD E++CLK IVLF T
Sbjct: 237 LAVAGLNTEDAPAEKVVSFMTEIRALQEIISKFKSLQVDPTEFACLKGIVLFKT 290
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 10/55 (18%)
Query: 243 PTARYSQCMQPNNIM-----GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
PT +Y P+ IM + +CE+AARLLF +V+WA+N+P F L R V
Sbjct: 160 PTPKY-----PHEIMQAYSSNPEAMCEVAARLLFMSVKWAKNVPAFLGLPFRDQV 209
>gi|351709883|gb|EHB12802.1| COUP transcription factor 1 [Heterocephalus glaber]
Length = 251
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/61 (91%), Positives = 60/61 (98%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 46 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 105
Query: 61 A 61
A
Sbjct: 106 A 106
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 69/103 (66%), Gaps = 27/103 (26%)
Query: 185 VPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPT 244
+PP Q PGQ+A LTNGD LNGH YLS YISLLLRA
Sbjct: 1 MPPTQP------NPGQYA-LTNGDP------------LNGHC-YLSGYISLLLRAA---- 36
Query: 245 ARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
SQCMQPNNIMGI+NICELAARLLFSAVEWARNIPFFPDLQ
Sbjct: 37 ---SQCMQPNNIMGIENICELAARLLFSAVEWARNIPFFPDLQ 76
>gi|156359518|ref|XP_001624815.1| predicted protein [Nematostella vectensis]
gi|156211616|gb|EDO32715.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 76/112 (67%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
D+I E A +LL+ +V WARNIP F DL DQ LL WSELFVL+++Q S+PL + PL
Sbjct: 127 DSIYESAVQLLYMSVTWARNIPTFLDLPFRDQAILLEEGWSELFVLSSAQFSLPLDMGPL 186
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L+AAGL DR+VA M IR+ Q V + K L +DS EY+CLKAIVLF
Sbjct: 187 LSAAGLQVDKAPTDRIVAGMADIRLLQNIVTRFKRLQIDSTEYACLKAIVLF 238
>gi|259013325|ref|NP_001158362.1| tailless [Saccoglossus kowalevskii]
gi|32307797|gb|AAP79295.1| tailless [Saccoglossus kowalevskii]
Length = 361
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 102/195 (52%), Gaps = 27/195 (13%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
ICE AARLLF +V+WA+N+P F L DQ+ LL W ELFVL A+Q M + + PLLA
Sbjct: 161 ICETAARLLFMSVKWAKNVPAFLSLPFRDQLLLLEEGWRELFVLGAAQWQMCMEIGPLLA 220
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT-------- 117
AAGL +++VA M +R FQE + K K + VD+ EY+CLK I++F +
Sbjct: 221 AAGLSTEHTNPEKIVAIMSEMRTFQEIIAKFKQMQVDATEYACLKGIIIFKSVFPDSPQE 280
Query: 118 --GKRIFTGVLLKALHVDSAEYSCLKAI-VLFTTGKRMFGK------------PLPLNQ- 161
G R F GV A D A+ + K I + T FGK P + +
Sbjct: 281 IRGVRDFHGV---ATLQDQAQLTLSKYIHTKYPTQPFRFGKLLLMLPQLRAIRPSTIEEL 337
Query: 162 HYTATISNVPLSSSL 176
+ TI N+P+ L
Sbjct: 338 FFRKTIGNIPIERLL 352
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 231 SYISLLLRAE-PYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHR 289
++++ LL E PY Y + P+ + ICE AARLLF +V+WA+N+P F L R
Sbjct: 129 TFMNTLLGGESPYMGITYPYELTPSYCSNPEAICETAARLLFMSVKWAKNVPAFLSLPFR 188
Query: 290 S 290
Sbjct: 189 D 189
>gi|156376474|ref|XP_001630385.1| predicted protein [Nematostella vectensis]
gi|156217405|gb|EDO38322.1| predicted protein [Nematostella vectensis]
Length = 340
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 78/117 (66%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
D + E AARLLF +V+WARNIP F +L DQV LL W ELF++ A Q ++PL VAPL
Sbjct: 147 DALFESAARLLFMSVKWARNIPSFVNLPFRDQVVLLEEGWRELFIMGAIQWNLPLEVAPL 206
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LAAAG+H A+++VA M IR QE + +AL V AE++CLKAIVLF R
Sbjct: 207 LAAAGMHVDNTPAEKIVATMADIRKLQEIGSRFRALQVCEAEFACLKAIVLFKPDLR 263
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
D + E AARLLF +V+WARNIP F +L R V
Sbjct: 147 DALFESAARLLFMSVKWARNIPSFVNLPFRDQV 179
>gi|241707738|ref|XP_002403220.1| zinc finger, C4 type, putative [Ixodes scapularis]
gi|215505031|gb|EEC14525.1| zinc finger, C4 type, putative [Ixodes scapularis]
Length = 299
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 76/114 (66%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ ICE AARLLF V+W + + L + DQ+ LL W ELFVL+A+Q +PL VAPL
Sbjct: 128 ETICESAARLLFMNVKWMKTVTALTALPMRDQLTLLEEGWRELFVLSAAQFMLPLEVAPL 187
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
LAAAGL + P ++RV + IR FQE + + K + VD+ EY+C+KAI+LF T
Sbjct: 188 LAAAGLSSEPSTSERVATLVSEIRNFQEIIARFKEMQVDATEYACVKAILLFKT 241
>gi|291232333|ref|XP_002736112.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 308
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 92/168 (54%), Gaps = 19/168 (11%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ ICE AARLLF +V+WA+N+P F L DQ+ LL W ELFVL A+Q M + + PL
Sbjct: 101 EAICETAARLLFMSVKWAKNVPAFLSLPFRDQLLLLEEGWRELFVLGAAQWQMCMEIGPL 160
Query: 64 LAAAG-----LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT- 117
LAAAG L +++VA M +R FQE + K K + VD+ EY+CLK I++F +
Sbjct: 161 LAAAGQLHFRLSTEHTNPEKIVAIMSEMRTFQEIIAKFKQMQVDATEYACLKGIIIFKSV 220
Query: 118 ---------GKRIFTGVLLKALHVDSAEYSCLKAI-VLFTTGKRMFGK 155
G R F GV A D A+ + K I + T FGK
Sbjct: 221 FPDSPQEIRGVRDFHGV---ATLQDQAQLTLSKYIHTKYPTQPFRFGK 265
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 243 PTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRS 290
P +Y + P+ + ICE AARLLF +V+WA+N+P F L R
Sbjct: 84 PMPKYPYELTPSYCSNPEAICETAARLLFMSVKWAKNVPAFLSLPFRD 131
>gi|321478244|gb|EFX89201.1| tailless-like protein [Daphnia pulex]
Length = 337
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ ICE AARLLF V WA+++P F L DQ+ LL W ELFVL A+Q ++P+ L
Sbjct: 145 ETICESAARLLFMNVRWAKSVPAFTTLPSRDQIILLEESWRELFVLGAAQFTLPIEAGTL 204
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
+ A GL +SP +R + + I+ FQE V K K ++VD+ EY+CL+A++LF T
Sbjct: 205 MTALGLSSSP--TERQLGLLSEIKAFQETVAKFKQMNVDATEYACLRAVILFKT 256
>gi|259013303|ref|NP_001158447.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
gi|196475499|gb|ACG76360.1| photoreceptor-specific nuclear receptor protein [Saccoglossus
kowalevskii]
Length = 439
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 74/117 (63%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+NI E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q SMPL +PL
Sbjct: 248 ENIYESSARLLFMAVKWAKNLPSFSALPFRDQVILLEEAWSELFLLCAIQWSMPLESSPL 307
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
L A + + A + IRV QE + + KA++VD AE++C+KAIVLF R
Sbjct: 308 LVAPEQSQATQLNGKTAAMLSDIRVLQEIMARFKAMNVDPAEFACMKAIVLFKPDTR 364
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+NI E +ARLLF AV+WA+N+P F L R V
Sbjct: 248 ENIYESSARLLFMAVKWAKNLPSFSALPFRDQV 280
>gi|443688970|gb|ELT91492.1| hypothetical protein CAPTEDRAFT_53417, partial [Capitella teleta]
Length = 390
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ DNI E AARLLF +V+WARNIP F L DQ LL WSELF+L+A+Q S+PL
Sbjct: 175 LAADNIYETAARLLFMSVKWARNIPSFLQLPFRDQAILLEESWSELFILSAAQWSLPLDP 234
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL+A G+ +D A M IR ++ V + AL VD+ E +CLKA+VLF G+
Sbjct: 235 NSLLSANGVANDNHPSDTPAAMMAQIRAMKDIVARFNALRVDATECACLKALVLFKAGRH 294
Query: 121 IFT-GVLLKALHVDSAEYSCLK 141
+ G ++ + S+E L+
Sbjct: 295 LVVFGSIISVTKLPSSELPELR 316
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 251 MQPN-NIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRS 290
MQ N N + DNI E AARLLF +V+WARNIP F L R
Sbjct: 168 MQLNPNGLAADNIYETAARLLFMSVKWARNIPSFLQLPFRD 208
>gi|281353714|gb|EFB29298.1| hypothetical protein PANDA_011329 [Ailuropoda melanoleuca]
Length = 391
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 77/123 (62%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q S+PL
Sbjct: 197 GLDSIQETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 256
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
PLLAA A+ + ++ R+ QE + + +AL VD+ E++CLKA+VLF R
Sbjct: 257 PLLAAPEASAAGSSQGQLALASAESRILQETISRFRALAVDATEFACLKALVLFKPETRG 316
Query: 122 FTG 124
G
Sbjct: 317 LKG 319
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 197 GLDSIQETSARLLFMAVKWAKNLPVFSNLPFRDQV 231
>gi|301773902|ref|XP_002922374.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Ailuropoda
melanoleuca]
Length = 483
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 77/123 (62%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q S+PL
Sbjct: 289 GLDSIQETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 348
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
PLLAA A+ + ++ R+ QE + + +AL VD+ E++CLKA+VLF R
Sbjct: 349 PLLAAPEASAAGSSQGQLALASAESRILQETISRFRALAVDATEFACLKALVLFKPETRG 408
Query: 122 FTG 124
G
Sbjct: 409 LKG 411
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 289 GLDSIQETSARLLFMAVKWAKNLPVFSNLPFRDQV 323
>gi|410960926|ref|XP_003987038.1| PREDICTED: photoreceptor-specific nuclear receptor [Felis catus]
Length = 411
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 75/119 (63%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q S+PL
Sbjct: 217 GLDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 276
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLAA A+ + R+ RV QE + + +AL VD E++C+KA+VLF R
Sbjct: 277 PLLAAPEASAAGSSQGRLALASAESRVLQETISRFRALAVDPTEFACMKALVLFKPETR 335
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 217 GLDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 251
>gi|390341307|ref|XP_794533.3| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Strongylocentrotus purpuratus]
Length = 410
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 72/115 (62%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D ICE AARLLF ++ W +N+P F L +DQ+ LL W ELF+L A+Q M +
Sbjct: 213 VDAICETAARLLFMSIRWVKNVPAFIGLPYSDQLTLLEEGWRELFILGAAQWQMTVDGPG 272
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
L+A+AG+ A+++ A +RV QE + K + L+VD E++CLK IV+F T
Sbjct: 273 LMASAGMKPDTTPAEKLAAISSELRVLQELIAKFRQLNVDDTEFACLKGIVIFKT 327
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 221 GLNGHSSYLSS---YISLLLRAEP-YPTARYSQCMQPNNIM----GIDNICELAARLLFS 272
G+ + S + S Y S +A P YPT +Y +P +M +D ICE AARLLF
Sbjct: 169 GIESYPSIIVSPVDYTSFSPQAVPCYPTPKYPH--EPVTMMPPVGSVDAICETAARLLFM 226
Query: 273 AVEWARNIPFF 283
++ W +N+P F
Sbjct: 227 SIRWVKNVPAF 237
>gi|7706515|ref|NP_057430.1| photoreceptor-specific nuclear receptor isoform a [Homo sapiens]
gi|6651225|gb|AAF22227.1|AF148128_1 nuclear receptor [Homo sapiens]
gi|119598283|gb|EAW77877.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b
[Homo sapiens]
gi|325495505|gb|ADZ17358.1| photoreceptor cell-specific nuclear receptor variant 1 [Homo
sapiens]
Length = 367
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 216 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 275
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV QE + + +AL VD E++C+KA+VLF R
Sbjct: 276 PLLAPPEASAAGGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETR 334
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 216 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 250
>gi|7657395|ref|NP_055064.1| photoreceptor-specific nuclear receptor isoform b [Homo sapiens]
gi|8928275|sp|Q9Y5X4.1|NR2E3_HUMAN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|4726075|gb|AAD28301.1|AF121129_1 photoreceptor-specific nuclear receptor [Homo sapiens]
gi|7329721|emb|CAB82769.1| photoreceptor-specific nuclear receptor [Homo sapiens]
gi|119598282|gb|EAW77876.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a
[Homo sapiens]
gi|216409728|dbj|BAH02301.1| photoreceptor-specific nuclear receptor [Homo sapiens]
Length = 410
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 216 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 275
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV QE + + +AL VD E++C+KA+VLF R
Sbjct: 276 PLLAPPEASAAGGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETR 334
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 216 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 250
>gi|51860121|gb|AAU11312.1| COUP-TF1 nuclear orphan receptor, partial [Hydra vulgaris]
Length = 453
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 74/115 (64%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G D+I E+A RLLF+AVEWARN+PFF L +DQ+ALL+ WSEL++L+ SQ + +
Sbjct: 113 GGDSIYEMATRLLFNAVEWARNVPFFSALPTSDQIALLKSSWSELYILSTSQHCIAFQIN 172
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+ + S + A +++F+E VE+ K L D+AE+SCLKA+VLF
Sbjct: 173 ARALTSEQNLSEIKKRSEGANEASVKMFEELVERFKNLQTDAAEFSCLKALVLFN 227
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 17/108 (15%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQ+GR+P +S L G + QF A+ N S IA +S+ LS+ + +
Sbjct: 51 AVQKGRLP--KSPLEGSM-VDQFIAMNNNVSHYNGLHQIA-----NYSNVLSARLQQQQQ 102
Query: 239 AEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
+ + G D+I E+A RLLF+AVEWARN+PFF L
Sbjct: 103 NQYLSQNN---------LFGGDSIYEMATRLLFNAVEWARNVPFFSAL 141
>gi|115679027|ref|XP_792757.2| PREDICTED: nuclear receptor subfamily 2 group E member 1-like,
partial [Strongylocentrotus purpuratus]
Length = 297
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 72/115 (62%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D ICE AARLLF ++ W +N+P F L +DQ+ LL W ELF+L A+Q M +
Sbjct: 100 VDAICETAARLLFMSIRWVKNVPAFIGLPYSDQLTLLEEGWRELFILGAAQWQMTVDGPG 159
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
L+A+AG+ A+++ A +RV QE + K + L+VD E++CLK IV+F T
Sbjct: 160 LMASAGMKPDTTPAEKLAAISSELRVLQELIAKFRQLNVDDTEFACLKGIVIFKT 214
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 221 GLNGHSSYLSS---YISLLLRAEP-YPTARYSQCMQPNNIM----GIDNICELAARLLFS 272
G+ + S + S Y S +A P YPT +Y +P +M +D ICE AARLLF
Sbjct: 56 GIESYPSIIVSPVDYTSFSPQAVPCYPTPKYPH--EPVTMMPPVGSVDAICETAARLLFM 113
Query: 273 AVEWARNIPFF 283
++ W +N+P F
Sbjct: 114 SIRWVKNVPAF 124
>gi|431893708|gb|ELK03529.1| Photoreceptor-specific nuclear receptor [Pteropus alecto]
Length = 417
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q S+PL
Sbjct: 223 GLDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 282
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ + R+ +R+ QE + + +AL VD E++C+KA+VLF R
Sbjct: 283 PLLAPPEASAAGSSQGRLALASAEMRILQETILRFRALAVDPTEFACMKALVLFKPETR 341
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 223 GLDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 257
>gi|27371232|gb|AAH41421.1| NR2E3 protein [Homo sapiens]
Length = 322
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 128 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 187
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV QE + + +AL VD E++C+KA+VLF R
Sbjct: 188 PLLAPPEASAAGGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETR 246
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 128 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 162
>gi|441617194|ref|XP_004088427.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Nomascus leucogenys]
Length = 562
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 72/119 (60%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 368 GLDGIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 427
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV +E + + +AL VD E++C+KA+VLF R
Sbjct: 428 PLLAPPEASAAGGAQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETR 486
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D I E +ARLLF AV+WA+N+P F L R V
Sbjct: 368 GLDGIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 402
>gi|296213607|ref|XP_002753344.1| PREDICTED: photoreceptor-specific nuclear receptor [Callithrix
jacchus]
Length = 368
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF +V+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 174 GLDSIHETSARLLFMSVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 233
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV QE + + +AL VD E++C+KA+VLF R
Sbjct: 234 PLLAPPEASAAGGAPGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETR 292
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF +V+WA+N+P F L R V
Sbjct: 174 GLDSIHETSARLLFMSVKWAKNLPVFSSLPFRDQV 208
>gi|403276151|ref|XP_003929774.1| PREDICTED: photoreceptor-specific nuclear receptor [Saimiri
boliviensis boliviensis]
Length = 552
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF +V+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 358 GLDSIHETSARLLFMSVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 417
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ R+ QE + + +AL VD E++C+KA+VLF R
Sbjct: 418 PLLAPPEASAAGGAQGRLTLASMETRILQETISRFRALAVDPTEFACMKALVLFKPETR 476
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF +V+WA+N+P F L R V
Sbjct: 358 GLDSIHETSARLLFMSVKWAKNLPVFSSLPFRDQV 392
>gi|355692849|gb|EHH27452.1| Retina-specific nuclear receptor, partial [Macaca mulatta]
Length = 411
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 217 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 276
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV +E + + +AL VD E++C+KA+VLF R
Sbjct: 277 PLLAPPEASAAGGAQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETR 335
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 217 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 251
>gi|402874751|ref|XP_003901191.1| PREDICTED: photoreceptor-specific nuclear receptor [Papio anubis]
Length = 445
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 251 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 310
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV +E + + +AL VD E++C+KA+VLF R
Sbjct: 311 PLLAPPEASAAGGAQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETR 369
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 251 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 285
>gi|426379592|ref|XP_004056476.1| PREDICTED: photoreceptor-specific nuclear receptor [Gorilla gorilla
gorilla]
Length = 402
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 208 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 267
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV +E + + +AL VD E++C+KA+VLF R
Sbjct: 268 PLLAPPEASAAGGAQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETR 326
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 208 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 242
>gi|297697018|ref|XP_002825669.1| PREDICTED: photoreceptor-specific nuclear receptor [Pongo abelii]
Length = 614
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 420 GLDSIHETSARLLFMAVKWAKNLPVFSGLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 479
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV +E + + +AL VD E++C+KA+VLF R
Sbjct: 480 PLLAPPEASAAGGAQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETR 538
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 420 GLDSIHETSARLLFMAVKWAKNLPVFSGLPFRDQV 454
>gi|149692277|ref|XP_001495004.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Equus
caballus]
Length = 480
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 73/118 (61%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D+I E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q S+PL P
Sbjct: 287 LDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCP 346
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LLA A+ + R+ R+ QE + + +AL VD E++C+KA+VLF R
Sbjct: 347 LLAPPEASAAGSSQGRLALASAETRILQETISRFRALAVDPTEFACMKALVLFKPETR 404
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+D+I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 287 LDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 320
>gi|440897500|gb|ELR49170.1| Photoreceptor-specific nuclear receptor, partial [Bos grunniens
mutus]
Length = 427
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D+I E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q S+PL P
Sbjct: 234 LDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDNCP 293
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LLA A + R+V R+ QE + + +AL VD E++C+KA+VLF R
Sbjct: 294 LLALPEASAGGSSQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETR 351
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+D+I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 234 LDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 267
>gi|6681852|gb|AAF15392.2|AF107729_1 paraneoplastic retinopathy associated protein De [Bos taurus]
Length = 427
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D+I E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q S+PL P
Sbjct: 234 LDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDNCP 293
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LLA A + R+V R+ QE + + +AL VD E++C+KA+VLF R
Sbjct: 294 LLALPEASAGGSSQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETR 351
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+D+I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 234 LDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 267
>gi|114657918|ref|XP_001175025.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 3 [Pan
troglodytes]
Length = 402
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 208 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 267
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV +E + + +AL VD E++C+KA+VLF R
Sbjct: 268 PLLAPPEASAAGGAQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETR 326
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 208 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 242
>gi|397495508|ref|XP_003818594.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
paniscus]
Length = 402
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 208 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 267
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV +E + + +AL VD E++C+KA+VLF R
Sbjct: 268 PLLAPPEASAAGGAQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETR 326
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 208 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 242
>gi|263506139|sp|Q9TTF0.2|NR2E3_BOVIN RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
Length = 411
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D+I E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q S+PL P
Sbjct: 218 LDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDNCP 277
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LLA A + R+V R+ QE + + +AL VD E++C+KA+VLF R
Sbjct: 278 LLALPEASAGGSSQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETR 335
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+D+I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 218 LDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 251
>gi|269315847|ref|NP_001161372.1| photoreceptor-specific nuclear receptor [Bos taurus]
gi|296483590|tpg|DAA25705.1| TPA: photoreceptor-specific nuclear receptor [Bos taurus]
Length = 411
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D+I E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q S+PL P
Sbjct: 218 LDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDNCP 277
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LLA A + R+V R+ QE + + +AL VD E++C+KA+VLF R
Sbjct: 278 LLALPEASAGGSSQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETR 335
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+D+I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 218 LDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 251
>gi|443724903|gb|ELU12704.1| hypothetical protein CAPTEDRAFT_226190 [Capitella teleta]
Length = 393
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 73/115 (63%), Gaps = 4/115 (3%)
Query: 7 CELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAA 66
CE AARLLF +V+WA+N+P F L DQ LL W ELFVL A+Q MP+ APLLA+
Sbjct: 191 CEAAARLLFMSVKWAKNVPAFLSLPFRDQTLLLEEGWRELFVLGAAQFQMPIDPAPLLAS 250
Query: 67 AGL----HASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
AG+ + ++D V + IR Q+ + K KA+ VD+ EY+CLK IV+F T
Sbjct: 251 AGISSPDKSPSSSSDSTVDVVGEIRALQDIIAKFKAMQVDATEYACLKGIVIFKT 305
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 242 YPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRS 290
+PT +Y + + CE AARLLF +V+WA+N+P F L R
Sbjct: 170 HPTPKYPHEVPAEYGGNPEATCEAAARLLFMSVKWAKNVPAFLSLPFRD 218
>gi|109081780|ref|XP_001089693.1| PREDICTED: photoreceptor-specific nuclear receptor [Macaca mulatta]
Length = 448
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 72/119 (60%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 254 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 313
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA + A R+ RV +E + + +AL VD E++C+KA+VLF R
Sbjct: 314 PLLAPPEASTAGGAQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETR 372
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 254 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 288
>gi|397495510|ref|XP_003818595.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 2 [Pan
paniscus]
Length = 322
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 128 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 187
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV +E + + +AL VD E++C+KA+VLF R
Sbjct: 188 PLLAPPEASAAGGAQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETR 246
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 128 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 162
>gi|114657922|ref|XP_001175020.1| PREDICTED: photoreceptor-specific nuclear receptor isoform 1 [Pan
troglodytes]
Length = 322
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 128 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 187
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV +E + + +AL VD E++C+KA+VLF R
Sbjct: 188 PLLAPPEASAAGGAQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLFKPETR 246
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 128 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 162
>gi|327285350|ref|XP_003227397.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Anolis
carolinensis]
Length = 418
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 75/117 (64%), Gaps = 2/117 (1%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+++ E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q S+PL PL
Sbjct: 228 ESVYETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPLETCPL 287
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
L+ + L +P ++V+ IR QE + + KAL VD E++C+KAIVLF R
Sbjct: 288 LSVSDL--APALNGKLVSGGTDIRALQEVIARFKALAVDPTEFACMKAIVLFKPETR 342
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 12/52 (23%)
Query: 241 PYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
PYPTA +++ E +ARLLF AV+WA+N+P F +L R V
Sbjct: 221 PYPTA------------SPESVYETSARLLFMAVKWAKNLPVFSNLPFRDQV 260
>gi|224062203|ref|XP_002192483.1| PREDICTED: photoreceptor-specific nuclear receptor [Taeniopygia
guttata]
Length = 404
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 73/117 (62%), Gaps = 5/117 (4%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+NI E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q SMPL PL
Sbjct: 217 ENIYETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPLESCPL 276
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LA P + + A +D +R QE + + KAL VD E++C+KA+VLF R
Sbjct: 277 LAV----PEPTSGKLLPATLD-VRALQETLGRFKALAVDPTEFACMKAVVLFKPETR 328
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 251 MQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
M P +NI E +ARLLF AV+WA+N+P F +L R V
Sbjct: 208 MAPYPAASPENIYETSARLLFMAVKWAKNLPVFSNLPFRDQV 249
>gi|242013777|ref|XP_002427577.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
gi|212511992|gb|EEB14839.1| Orphan nuclear receptor NR2E1, putative [Pediculus humanus
corporis]
Length = 403
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%), Gaps = 4/118 (3%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
++ +CE AARLLF V WA+N+P F L DQ+ LL W ELFVL+ASQ +PL +
Sbjct: 190 SVEALCESAARLLFMNVTWAKNVPAFTRLNYKDQLLLLEESWRELFVLSASQFMLPLELV 249
Query: 62 PLLAAAGLHASPMA-ADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
LL A H + A +++ + ++ FQE + K K LHVD EY+CL+AIVLF T
Sbjct: 250 DLLTA---HTTVTANSEKALTIAQEVKQFQETLIKFKQLHVDIHEYACLRAIVLFKTS 304
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHR 289
++ +CE AARLLF V WA+N+P F L ++
Sbjct: 190 SVEALCESAARLLFMNVTWAKNVPAFTRLNYK 221
>gi|157278483|ref|NP_001098343.1| nuclear receptor subfamily 2 group E member 1 [Oryzias latipes]
gi|9910805|sp|Q9YGL3.1|NR2E1_ORYLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|4468637|emb|CAB38085.1| tailless [Oryzias latipes]
Length = 396
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 75/115 (65%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L ++DQ+ LL W ELFVL +Q ++P+
Sbjct: 191 VATESVCESAARLLFMSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDS 250
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +GL++ M A R+ M I+ QE V + + + +D+ E++CLK IV F
Sbjct: 251 TTLLAVSGLNSENMEAQRMNKIMAEIQALQEVVTRFRQMRLDATEFACLKCIVTF 305
>gi|148694042|gb|EDL25989.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_b [Mus
musculus]
Length = 303
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D I E +ARLLF AV+WA+N+P F +L DQV LL W+ELF+L A Q S+PL P
Sbjct: 131 LDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCP 190
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LLA AS + R+ R QE + + +AL VD E++CLKA+VLF G +
Sbjct: 191 LLAPP--EASGSSQGRLALASAETRFLQETISRFRALAVDPTEFACLKALVLFKPGTEPW 248
Query: 123 T 123
+
Sbjct: 249 S 249
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
P + +D I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 125 PASPCSLDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 164
>gi|122892614|gb|ABM67369.1| NR2E3 [Hylobates klossii]
Length = 140
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 72/114 (63%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 25 GLDSIHETSARLLFMAVKWAKNLPVFSGLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 84
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
PLLA A+ A R+ RV +E + + +AL VD E++C+KA+VLF
Sbjct: 85 PLLAPPEASAAGGAQGRLTLASMETRVLRETISRFRALAVDPTEFACMKALVLF 138
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 25 GLDSIHETSARLLFMAVKWAKNLPVFSGLPFRDQV 59
>gi|45382987|ref|NP_989925.1| photoreceptor-specific nuclear receptor [Gallus gallus]
gi|15777197|gb|AAL05940.1| photoreceptor-specific nuclear receptor [Gallus gallus]
Length = 406
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G +N+ E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q SMPL
Sbjct: 217 GPENVYETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPLESC 276
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA P + A +D +R QE + + KAL VD E++C+KA+VLF R
Sbjct: 277 PLLAV----PEPSPGKLLPAAVD-VRALQETLGRFKALAVDPTEFACMKAVVLFKPETR 330
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 12/52 (23%)
Query: 241 PYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
PYP A G +N+ E +ARLLF AV+WA+N+P F +L R V
Sbjct: 212 PYPAA------------GPENVYETSARLLFMAVKWAKNLPVFSNLPFRDQV 251
>gi|326926346|ref|XP_003209363.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor-like [Meleagris gallopavo]
Length = 395
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G +N+ E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q SMPL
Sbjct: 206 GPENVYETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPLESC 265
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA P + A +D +R QE + + KAL VD E++C+KA+VLF R
Sbjct: 266 PLLAV----PEPSPGKLLPAAVD-VRALQETLGRFKALAVDPTEFACMKAVVLFKPETR 319
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 12/52 (23%)
Query: 241 PYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
PYP A G +N+ E +ARLLF AV+WA+N+P F +L R V
Sbjct: 201 PYPAA------------GPENVYETSARLLFMAVKWAKNLPVFSNLPFRDQV 240
>gi|432111648|gb|ELK34747.1| Photoreceptor-specific nuclear receptor [Myotis davidii]
Length = 404
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+++P F +L DQV LL WSELF+L A Q S+PL
Sbjct: 210 GVDSIHETSARLLFMAVKWAKSLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 269
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ + R+ +R QE + + + L VD E++C+KA+VLF R
Sbjct: 270 PLLAPPEASAAGSSQGRLALASAEMRFLQETISRFRVLAVDPTEFACMKALVLFKPETR 328
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+++P F +L R V
Sbjct: 210 GVDSIHETSARLLFMAVKWAKSLPVFSNLPFRDQV 244
>gi|260828845|ref|XP_002609373.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
gi|229294729|gb|EEN65383.1| hypothetical protein BRAFLDRAFT_236186 [Branchiostoma floridae]
Length = 336
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
DN+ E AARLLF V+WARNIP F L DQ LL W+ELFVL+A+Q +MP+ L
Sbjct: 138 DNMYETAARLLFIVVKWARNIPSFLQLPFRDQAILLEEAWNELFVLSAAQWAMPIDPGSL 197
Query: 64 LAAAGLHASPMAADRVVA-------FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L AA +SP +ADRV+ M IR ++ + + VD EY+CLKAIVLF
Sbjct: 198 LTAA--TSSPASADRVIQSSEQSSLLMADIRGLRDVTSRFQEAQVDPTEYACLKAIVLFK 255
Query: 117 TGKR 120
+ R
Sbjct: 256 SDAR 259
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDLQHRS 290
DN+ E AARLLF V+WARNIP F L R
Sbjct: 138 DNMYETAARLLFIVVKWARNIPSFLQLPFRD 168
>gi|291225515|ref|XP_002732745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 405
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
++++ E AARLLF V+WARNIP F L DQ LL W+ELF+L+A+Q ++PL +
Sbjct: 212 ALESVHETAARLLFMTVKWARNIPSFLTLPFRDQAILLEEGWNELFLLSAAQWAIPLELG 271
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL+A H P D++ M IR Q+ + + A+ VD+ EY+CLKA+VLF R
Sbjct: 272 SLLSAISAH--PNNGDKMPCLMADIRTLQDTMSRFNAMQVDATEYACLKAVVLFKPETR 328
>gi|344284423|ref|XP_003413967.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Loxodonta
africana]
Length = 608
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 71/118 (60%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL P
Sbjct: 415 LDSIQETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCP 474
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LLA A+ + R+ I QE + + +AL VD E++C+KA+VLF R
Sbjct: 475 LLAPPEAPAASSSQGRLKLASMEIHALQETISRFRALAVDPTEFACMKALVLFRPETR 532
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 415 LDSIQETSARLLFMAVKWAKNLPVFSSLPFRDQV 448
>gi|395822830|ref|XP_003784710.1| PREDICTED: photoreceptor-specific nuclear receptor [Otolemur
garnettii]
Length = 693
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 72/119 (60%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 499 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDGC 558
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLL A+ + R +R+ +E + + +AL VD E++C+KA+VLF R
Sbjct: 559 PLLVPPEASAASGSQGRHTLASMEMRILRETISRFRALAVDPTEFACMKALVLFKPETR 617
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 499 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 533
>gi|390331720|ref|XP_780706.3| PREDICTED: photoreceptor-specific nuclear receptor-like
[Strongylocentrotus purpuratus]
Length = 443
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 71/117 (60%), Gaps = 3/117 (2%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
D+I E +ARLLF AV+WA+ +P F L DQV LL WSELF+L A Q SMPL PL
Sbjct: 254 DSIYESSARLLFMAVKWAKTLPSFSGLPFRDQVILLEEAWSELFLLCALQWSMPLDSCPL 313
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
L GLH D+ + IR+ QE + + + L VD AE++CLKAIVLF R
Sbjct: 314 L--TGLHEQSQ-TDKAATCVSDIRLLQEIMSRFRGLRVDPAEFACLKAIVLFKPETR 367
>gi|47224633|emb|CAG03617.1| unnamed protein product [Tetraodon nigroviridis]
Length = 393
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 75/119 (63%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L ++DQ+ LL W ELFVL +Q ++P+
Sbjct: 173 VATESVCESAARLLFMSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDS 232
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
LLA +G++ + R+ + I+ QE V + + + +D+ E++CLK IV F G+
Sbjct: 233 TTLLAVSGMNTENTESQRMTKIVSEIQALQEVVTRFRQMRLDATEFACLKCIVTFKAGQ 291
>gi|344248427|gb|EGW04531.1| Photoreceptor-specific nuclear receptor [Cricetulus griseus]
Length = 395
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D I E +ARLLF AV+WA+N+P F L DQV LL W+ELF+L A Q S+PL P
Sbjct: 204 LDGIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCP 263
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LLA AS + R+V +R QE + + +AL VD E++C+KA+VLF R
Sbjct: 264 LLAPP--EASGGSQSRLVLASAEMRFLQETISRFRALAVDPTEFACMKALVLFKPETR 319
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
P + +D I E +ARLLF AV+WA+N+P F L R V
Sbjct: 198 PASPCNLDGIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 237
>gi|354473494|ref|XP_003498970.1| PREDICTED: photoreceptor-specific nuclear receptor [Cricetulus
griseus]
Length = 403
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D I E +ARLLF AV+WA+N+P F L DQV LL W+ELF+L A Q S+PL P
Sbjct: 212 LDGIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCP 271
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LLA AS + R+V +R QE + + +AL VD E++C+KA+VLF R
Sbjct: 272 LLAPP--EASGGSQSRLVLASAEMRFLQETISRFRALAVDPTEFACMKALVLFKPETR 327
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
P + +D I E +ARLLF AV+WA+N+P F L R V
Sbjct: 206 PASPCNLDGIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 245
>gi|410916891|ref|XP_003971920.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Takifugu rubripes]
Length = 385
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 73/115 (63%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L ++DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDP 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + R+ M I+ QE V + + + +D+ E++CLK IV F
Sbjct: 240 TTLLAVSGMNTENTESQRMTKIMSEIQALQEVVTRFRQMRLDATEFACLKCIVTF 294
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDL 286
+ +++CE AARLLF +++WA+++P F L
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTL 209
>gi|260809813|ref|XP_002599699.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
gi|229284980|gb|EEN55711.1| hypothetical protein BRAFLDRAFT_56643 [Branchiostoma floridae]
Length = 632
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 73/123 (59%), Gaps = 6/123 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF + WAR+IP F L L+R+ WSELF L SQCS + +
Sbjct: 421 LNVHYICESASRLLFLTMHWARSIPAFQALGQECHTGLVRVCWSELFTLGLSQCSAVMSL 480
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L A + + A ++ADRV M+HI QE + K+ AL VD EY+ +KAIVL
Sbjct: 481 PTILTAIVNHLQSSVQADKLSADRVKVVMEHIWKLQEFINKMAALTVDPTEYAYMKAIVL 540
Query: 115 FTT 117
F+T
Sbjct: 541 FST 543
>gi|410916893|ref|XP_003971921.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Takifugu rubripes]
gi|21538834|gb|AAM61763.1|AF461063_2 nuclear receptor 2E1 [Takifugu rubripes]
Length = 396
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 73/115 (63%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L ++DQ+ LL W ELFVL +Q ++P+
Sbjct: 191 VATESVCESAARLLFMSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDP 250
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + R+ M I+ QE V + + + +D+ E++CLK IV F
Sbjct: 251 TTLLAVSGMNTENTESQRMTKIMSEIQALQEVVTRFRQMRLDATEFACLKCIVTF 305
>gi|195999876|ref|XP_002109806.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
gi|190587930|gb|EDV27972.1| hypothetical protein TRIADDRAFT_21656 [Trichoplax adhaerens]
Length = 352
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 74/117 (63%), Gaps = 8/117 (6%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDL-QVTDQVALLRLVWSELFVLNASQCSMPLH 59
+G + IC+ + R+L+S VEW +P+F ++ TDQ+ LLR WSELF+LNA+Q S PL+
Sbjct: 157 IGFEAICQSSMRILYSVVEWTVKLPYFSEMTSCTDQMTLLRSCWSELFILNAAQWSPPLN 216
Query: 60 VAPLLAAAGLHAS-PMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+ P + + + P M HI +FQE + KLK +D+ E+SCLKA++LF
Sbjct: 217 MFPYSTTSNFYLTHPQEV------MHHICLFQEAIVKLKKRFIDTTEFSCLKALILF 267
>gi|449688240|ref|XP_002168741.2| PREDICTED: nuclear receptor subfamily 2 group F member 1-B-like
[Hydra magnipapillata]
Length = 334
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 69/108 (63%)
Query: 9 LAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAG 68
+A RLLF+AVEWARN+PFF L +DQ+ALL+ WSEL++L+ SQ + + +
Sbjct: 1 MATRLLFNAVEWARNVPFFSALPTSDQIALLKSSWSELYILSTSQHCIAFQINARALTSE 60
Query: 69 LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+ S + A +++F+E VE+ K L D+AE+SCLKA+VLF
Sbjct: 61 QNLSEIKKRSEGANEASVKMFEELVERFKNLQTDAAEFSCLKALVLFN 108
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 265 LAARLLFSAVEWARNIPFFPDL 286
+A RLLF+AVEWARN+PFF L
Sbjct: 1 MATRLLFNAVEWARNVPFFSAL 22
>gi|7305323|ref|NP_038736.1| photoreceptor-specific nuclear receptor [Mus musculus]
gi|10720145|sp|Q9QXZ7.1|NR2E3_MOUSE RecName: Full=Photoreceptor-specific nuclear receptor; AltName:
Full=Nuclear receptor subfamily 2 group E member 3;
AltName: Full=Retina-specific nuclear receptor
gi|6651227|gb|AAF22228.1|AF148129_1 nuclear receptor [Mus musculus]
gi|7770295|gb|AAF69682.1|AF204053_1 photoreceptor specific nuclear receptor [Mus musculus]
gi|17028410|gb|AAH17521.1| Nuclear receptor subfamily 2, group E, member 3 [Mus musculus]
gi|26343545|dbj|BAC35429.1| unnamed protein product [Mus musculus]
gi|148694043|gb|EDL25990.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_c [Mus
musculus]
Length = 395
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D I E +ARLLF AV+WA+N+P F +L DQV LL W+ELF+L A Q S+PL P
Sbjct: 204 LDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCP 263
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LLA AS + R+ R QE + + +AL VD E++CLKA+VLF R
Sbjct: 264 LLAPP--EASGSSQGRLALASAETRFLQETISRFRALAVDPTEFACLKALVLFKPETR 319
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
P + +D I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 198 PASPCSLDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 237
>gi|148694040|gb|EDL25987.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus
musculus]
gi|148694041|gb|EDL25988.1| nuclear receptor subfamily 2, group E, member 3, isoform CRA_a [Mus
musculus]
Length = 322
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D I E +ARLLF AV+WA+N+P F +L DQV LL W+ELF+L A Q S+PL P
Sbjct: 131 LDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCP 190
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LLA AS + R+ R QE + + +AL VD E++CLKA+VLF R
Sbjct: 191 LLAPP--EASGSSQGRLALASAETRFLQETISRFRALAVDPTEFACLKALVLFKPETR 246
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
P + +D I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 125 PASPCSLDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 164
>gi|21310109|gb|AAM46150.1|AF378828_1 nuclear orphan receptor TR2/4 [Branchiostoma floridae]
Length = 511
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 73/123 (59%), Gaps = 6/123 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF + WAR+IP F L L+R+ WSELF L SQCS + +
Sbjct: 296 LNVHYICESASRLLFLTMHWARSIPAFQALGQECHTGLVRVCWSELFTLGLSQCSAVMSL 355
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L A + + A ++ADRV M+HI QE + K+ AL VD EY+ +KAIVL
Sbjct: 356 PTILTAIVNHLQSSVQADKLSADRVKVVMEHIWKLQEFINKMAALTVDPTEYAYMKAIVL 415
Query: 115 FTT 117
F+T
Sbjct: 416 FST 418
>gi|405978561|gb|EKC42941.1| Nuclear receptor subfamily 2 group E member 1 [Crassostrea gigas]
Length = 388
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
D++CE AAR+LF ++W ++IP F L DQ+ L+ W +LF+L+ +Q +P+ L
Sbjct: 185 DSVCETAARILFMTIKWTKSIPAFVGLPNRDQLVLIEESWRDLFILSLAQFRLPIQPHVL 244
Query: 64 LAAAGLHA-SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ A+G+ + S M ++R+ A M IR + ++K K ++VD EY+CLKAIV+F T R
Sbjct: 245 ITASGVTSDSKMTSERMSACMLEIRALHDVIDKFKLINVDPTEYTCLKAIVIFKTALR 302
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 242 YPTARYSQCMQ----PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRS 290
+PT RY M P N D++CE AAR+LF ++W ++IP F L +R
Sbjct: 165 HPTPRYPSEMSNFIFPTNTA--DSVCETAARILFMTIKWTKSIPAFVGLPNRD 215
>gi|147900594|ref|NP_001090633.1| nuclear receptor subfamily 2, group E, member 3 [Xenopus (Silurana)
tropicalis]
gi|115392210|gb|ABI96907.1| nuclear hormone receptor Nr2e3 [Xenopus (Silurana) tropicalis]
Length = 404
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 2/117 (1%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ + E +ARLL AV+WA+N+P F +L DQV LL WSELF+L A Q SMPL PL
Sbjct: 214 EGVYETSARLLLMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPLDSCPL 273
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
L+ L +S + V + +D +R+ QE + + K+L+VD E++CLKA++LF R
Sbjct: 274 LSVPDL-SSQVHGKSVSSTID-VRILQETISRFKSLNVDPTEFACLKAVLLFKPETR 328
>gi|348524801|ref|XP_003449911.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 2 [Oreochromis niloticus]
Length = 385
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 73/115 (63%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L ++DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDS 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + R+ M I+ QE V + + + +D+ E++CLK IV F
Sbjct: 240 TTLLAVSGMNTENTESQRMNKIMSEIQALQEVVTRFRQMRLDATEFACLKCIVTF 294
>gi|348524799|ref|XP_003449910.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
isoform 1 [Oreochromis niloticus]
Length = 396
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 73/115 (63%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L ++DQ+ LL W ELFVL +Q ++P+
Sbjct: 191 VATESVCESAARLLFMSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDS 250
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + R+ M I+ QE V + + + +D+ E++CLK IV F
Sbjct: 251 TTLLAVSGMNTENTESQRMNKIMSEIQALQEVVTRFRQMRLDATEFACLKCIVTF 305
>gi|449267650|gb|EMC78568.1| Photoreceptor-specific nuclear receptor [Columba livia]
Length = 406
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 70/117 (59%), Gaps = 5/117 (4%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+N+ E +ARLLF AV+WA+ +P F +L DQV LL WSELF+L A Q SMPL PL
Sbjct: 219 ENVYETSARLLFMAVKWAKTLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSMPLESCPL 278
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LA P + +D IR QE + + KAL VD E++C+KA+VLF R
Sbjct: 279 LAV----PEPAPGKLLPTALD-IRALQETLSRFKALAVDPTEFACMKAVVLFKPETR 330
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+N+ E +ARLLF AV+WA+ +P F +L R V
Sbjct: 219 ENVYETSARLLFMAVKWAKTLPVFSNLPFRDQV 251
>gi|147904762|ref|NP_001079280.1| nuclear receptor subfamily 2 group E member 1 [Xenopus laevis]
gi|6094490|sp|P70052.1|NR2E1_XENLA RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=xTLL
gi|1527203|gb|AAB07732.1| orphan nuclear receptor XTLL [Xenopus laevis]
Length = 386
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 77/125 (61%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+ + L
Sbjct: 183 ESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDASTL 242
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFT 123
LA +G++ + ++ + I+ Q+ V + + L +D+ E++CLK IV F G +
Sbjct: 243 LAVSGMNNENTESPKLNKIISEIQALQDVVSRFRQLRLDATEFACLKCIVTFKAGVSTHS 302
Query: 124 GVLLK 128
G L+
Sbjct: 303 GSELR 307
>gi|348583723|ref|XP_003477622.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Cavia
porcellus]
Length = 603
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 70/113 (61%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D++ E +ARLLF AV+WA+N+P +L DQV LL W ELF+L A Q S+PL P
Sbjct: 410 LDSVQETSARLLFMAVKWAKNLPVLSNLPFRDQVILLEEAWGELFLLGAIQWSLPLDSCP 469
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA A A+ + R+ R QE V + +AL VD E++C+KA++LF
Sbjct: 470 LLAPAEASAAGSSQGRLALASVERRFLQETVARFRALAVDPTEFACMKALILF 522
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
P + +D++ E +ARLLF AV+WA+N+P +L R V
Sbjct: 404 PVSPCSLDSVQETSARLLFMAVKWAKNLPVLSNLPFRDQV 443
>gi|348533763|ref|XP_003454374.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 426
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G +N+ E +ARLLF +V+WA+N+P F +L DQV LL WSELF+L A Q S+PL
Sbjct: 234 GSENVYETSARLLFMSVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPLDSC 293
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLL+ L M +D +R+ QE + KAL VD E++CLKAIVLF R
Sbjct: 294 PLLSLPDL-CPGMQGKTSYTSLD-LRLLQEVFSRFKALAVDPTEFACLKAIVLFKPETR 350
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G +N+ E +ARLLF +V+WA+N+P F +L R V
Sbjct: 234 GSENVYETSARLLFMSVKWAKNLPVFSNLPFRDQV 268
>gi|241647785|ref|XP_002409993.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
gi|215501485|gb|EEC10979.1| photoreceptor-specific nuclear receptor, putative [Ixodes
scapularis]
Length = 342
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 77/126 (61%), Gaps = 4/126 (3%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+++ E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q +PL +PL
Sbjct: 147 ESVYETSARLLFMAVKWAKNLPSFSNLPFRDQVILLEETWSELFLLCAIQWCLPLEASPL 206
Query: 64 LAA---AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ A L A P D +R+ QE + + +A+ VD AE++CLKAI+LF R
Sbjct: 207 FSPAEHAALAAHPANPGPKAPLAD-VRLLQELLARFRAIGVDPAEFACLKAILLFKAASR 265
Query: 121 IFTGVL 126
+ T +L
Sbjct: 266 VSTKLL 271
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+++ E +ARLLF AV+WA+N+P F +L R V
Sbjct: 147 ESVYETSARLLFMAVKWAKNLPSFSNLPFRDQV 179
>gi|328707384|ref|XP_001948870.2| PREDICTED: photoreceptor-specific nuclear receptor-like
[Acyrthosiphon pisum]
Length = 510
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+N+ E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL PL
Sbjct: 319 ENVYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEECWSELFLLNAVQWCLPLENNPL 378
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ H + + + IRV E + + + + VD AE++C+KAIVLF R
Sbjct: 379 FNPSD-HVAAIPNGKASQVAADIRVLNETLRRFRTISVDPAEFACMKAIVLFRADTR 434
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+N+ E +ARLLF AV+WA+N+P F L R V
Sbjct: 319 ENVYETSARLLFMAVKWAKNLPSFASLPFRDQV 351
>gi|443685615|gb|ELT89169.1| hypothetical protein CAPTEDRAFT_171557 [Capitella teleta]
Length = 437
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G + + E +ARLLF AV+W++++P F +L DQV LL WSELF+L A Q SMP+ +
Sbjct: 244 GQETVYECSARLLFMAVKWSKSLPSFANLPFRDQVILLEEAWSELFLLCAIQWSMPMESS 303
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLL+ + HA + + IR+ QE + + VD AE++CLKAIVLF R
Sbjct: 304 PLLSTSE-HAQNAPNGKATLTLTDIRILQEVFGRFRVAQVDPAEFACLKAIVLFKPDTR 361
>gi|126272955|ref|XP_001371421.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Monodelphis domestica]
Length = 405
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+N+ E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q S+PL PL
Sbjct: 215 ENVYETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPLESCPL 274
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
L+ +P ++++ ++ QE + + K+L VD E++C+KA+VLF R
Sbjct: 275 LSVP--DPTPGIQGKLMSASIETQILQETIARFKSLTVDPTEFACMKALVLFKPETR 329
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+N+ E +ARLLF AV+WA+N+P F +L R V
Sbjct: 215 ENVYETSARLLFMAVKWAKNLPVFSNLPFRDQV 247
>gi|55925261|ref|NP_001007369.1| photoreceptor-specific nuclear receptor [Danio rerio]
gi|55250124|gb|AAH85568.1| Zgc:103631 [Danio rerio]
gi|182889208|gb|AAI64789.1| Zgc:103631 protein [Danio rerio]
Length = 419
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+++ E +ARLLF +V+WA+N+P F L DQV LL WSELF+L A Q S+PL PL
Sbjct: 229 ESVYETSARLLFMSVKWAKNLPVFSHLPFRDQVILLEEAWSELFLLCAIQWSLPLDNCPL 288
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
L+ L SP + +RV QE + K L VD E++CLKAIVLF R
Sbjct: 289 LSLPDL--SPTGQGKGSPSASDVRVLQEVFSRFKPLQVDPTEFACLKAIVLFKPETR 343
>gi|57525699|ref|NP_001003608.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
gi|50418146|gb|AAH77146.1| Nuclear receptor subfamily 2, group E, member 1 [Danio rerio]
gi|116517486|gb|ABJ99095.1| nuclear receptor subfamily 2 group E member 1 [Danio rerio]
Length = 396
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 73/115 (63%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 191 VATESVCESAARLLFMSIKWAKSVPAFSTLPLPDQLILLEDAWRELFVLGIAQWAIPVDS 250
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+ LLA +G++ + R+ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 251 STLLAVSGMNTENTDSQRLNKIISEIQALQEVVTRFRQLRLDATEFACLKCIVTF 305
>gi|116517488|gb|ABJ99096.1| nuclear receptor subfamily 2 group E member 3 [Danio rerio]
Length = 348
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+++ E +ARLLF +V+WA+N+P F L DQV LL WSELF+L A Q S+PL PL
Sbjct: 158 ESVYETSARLLFMSVKWAKNLPVFSHLPFRDQVILLEEAWSELFLLCAIQWSLPLDNCPL 217
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
L+ L SP + +RV QE + K L VD E++CLKAIVLF R
Sbjct: 218 LSLPDL--SPTGQGKGSPSASDVRVLQEVFSRFKPLQVDPTEFACLKAIVLFKPETR 272
>gi|260802126|ref|XP_002595944.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
gi|229281196|gb|EEN51956.1| hypothetical protein BRAFLDRAFT_235500 [Branchiostoma floridae]
Length = 369
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 4/117 (3%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+NI E +ARLLF AV+WA+N+P F +L DQV LL W ELF+L A Q SMP +PL
Sbjct: 181 ENIYEASARLLFMAVKWAKNLPVFANLPFRDQVILLEEGWGELFLLCAIQWSMPFDTSPL 240
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
++ HA + A + +R QE V++ KAL VD +E++CLKA+ LF R
Sbjct: 241 VSPTE-HAQSGGSG---ATLLDLRALQEMVDRFKALEVDPSEFACLKAVALFKPDTR 293
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+NI E +ARLLF AV+WA+N+P F +L R V
Sbjct: 181 ENIYEASARLLFMAVKWAKNLPVFANLPFRDQV 213
>gi|432850556|ref|XP_004066809.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 431
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+N+ E +ARLLF +V+WA+N+P F +L DQV LL WSELF+L A Q S+PL PL
Sbjct: 241 ENVYETSARLLFMSVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPLDSCPL 300
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
L+ L M +D +R+ QE + KAL VD E++CLKAIVLF R
Sbjct: 301 LSLPDL-CPGMQGKTSYTGLD-LRLLQEAFSRFKALAVDPTEFACLKAIVLFKPETR 355
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+N+ E +ARLLF +V+WA+N+P F +L R V
Sbjct: 241 ENVYETSARLLFMSVKWAKNLPVFSNLPFRDQV 273
>gi|242004528|ref|XP_002423135.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212506081|gb|EEB10397.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 467
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 1/117 (0%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ I E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +P+ +PL
Sbjct: 276 ETIYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEECWSELFLLNAIQWCLPVESSPL 335
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ HA+ + + IRV + + + KA+ VD AE++CLKAIVLF + R
Sbjct: 336 F-SVNEHAATVPNGKSSQTAADIRVLNDMLLRYKAVGVDPAEFACLKAIVLFKSETR 391
>gi|351714332|gb|EHB17251.1| Photoreceptor-specific nuclear receptor [Heterocephalus glaber]
Length = 351
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 70/114 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D++ E++ARLLF AV+WA+++P L DQV LL W ELF+L A Q S+PL
Sbjct: 200 GLDSVQEISARLLFMAVKWAKSLPVLSSLPFRDQVILLEEAWGELFLLGAIQWSLPLDSC 259
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
PLL+ A A+ + R+ R QE V + + L VD E++C+KA+VLF
Sbjct: 260 PLLSPAEASAAGSSQGRLALASGERRFLQETVARFQVLAVDPTEFACMKALVLF 313
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
P + G+D++ E++ARLLF AV+WA+++P L R V
Sbjct: 195 PVSPCGLDSVQEISARLLFMAVKWAKSLPVLSSLPFRDQV 234
>gi|169409578|gb|ACA57920.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callicebus moloch]
Length = 385
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLSKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|449273615|gb|EMC83088.1| Nuclear receptor subfamily 2 group E member 1, partial [Columba
livia]
Length = 376
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 171 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 230
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 231 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 285
>gi|300676833|gb|ADK26709.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
gi|300676928|gb|ADK26800.1| nuclear receptor subfamily 2, group E, member 1 [Zonotrichia
albicollis]
Length = 385
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|126310401|ref|XP_001368385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Monodelphis domestica]
Length = 385
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGENTDSQKLSKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|395534716|ref|XP_003769385.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Sarcophilus harrisii]
Length = 385
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGENTDSQKLSKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|149046956|gb|EDL99704.1| rCG58537 [Rattus norvegicus]
Length = 385
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 73/115 (63%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G+++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|410912674|ref|XP_003969814.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Takifugu
rubripes]
Length = 431
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G +N+ E +ARLLF +V+WA+N+P F +L DQV LL WSELF+L A Q S+PL
Sbjct: 239 GSENVYETSARLLFMSVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPLESC 298
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLL+ L + +R+ QE + K L VD E++CLKAIVLF R
Sbjct: 299 PLLSLPDLCPGIQGKGSYTSL--DLRLLQEVFSRFKTLAVDPTEFACLKAIVLFKPETR 355
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G +N+ E +ARLLF +V+WA+N+P F +L R V
Sbjct: 239 GSENVYETSARLLFMSVKWAKNLPVFSNLPFRDQV 273
>gi|431838686|gb|ELK00616.1| Nuclear receptor subfamily 2 group E member 1 [Pteropus alecto]
Length = 408
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 203 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 262
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 263 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 317
>gi|60828539|gb|AAX36846.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
Length = 386
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|301763932|ref|XP_002917384.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
E member 1-like [Ailuropoda melanoleuca]
Length = 380
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 175 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 234
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 235 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 289
>gi|449497928|ref|XP_002192943.2| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Taeniopygia guttata]
Length = 532
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 73/115 (63%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 327 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 386
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G+++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 387 NTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 441
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 18/83 (21%)
Query: 217 IAAAGLNGHSSYLSSYISLLLRAEPY----PTARYSQCMQPNNIMGI---------DNIC 263
+ + GLN H L++ R + PT +Y P+ + G +++C
Sbjct: 279 VFSRGLNPHGLELAAVTGTPERQALWGLAQPTPKY-----PHEVNGTPMYLYEVATESVC 333
Query: 264 ELAARLLFSAVEWARNIPFFPDL 286
E AARLLF +++WA+++P F L
Sbjct: 334 ESAARLLFMSIKWAKSVPAFSTL 356
>gi|397507811|ref|XP_003824377.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
paniscus]
Length = 385
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|296198939|ref|XP_002746955.1| PREDICTED: nuclear receptor subfamily 2 group E member 1
[Callithrix jacchus]
Length = 386
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|197215627|gb|ACH53021.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Otolemur garnettii]
Length = 385
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|351702072|gb|EHB04991.1| Nuclear receptor subfamily 2 group E member 1 [Heterocephalus
glaber]
Length = 445
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 240 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 299
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 300 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 354
>gi|45384018|ref|NP_990501.1| nuclear receptor subfamily 2 group E member 1 [Gallus gallus]
gi|6094488|sp|Q91379.1|NR2E1_CHICK RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll
gi|619338|gb|AAB31467.1| nuclear receptor TLX [Gallus gallus]
gi|745066|prf||2015392A nuclear receptor Tlx
Length = 385
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|348560562|ref|XP_003466082.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cavia porcellus]
Length = 385
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|300798463|ref|NP_001179582.1| nuclear receptor subfamily 2 group E member 1 [Bos taurus]
gi|426234591|ref|XP_004011277.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Ovis
aries]
gi|296484166|tpg|DAA26281.1| TPA: nuclear receptor subfamily 2, group E, member 1 [Bos taurus]
Length = 385
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 197 GPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNI 256
P F A+T D AA++A + + +SL A+P P + P +
Sbjct: 127 APAFFTAVTQLDPHGLELAAVSA------TPERQTLVSL---AQPTPKYPHEVNGTPMYL 177
Query: 257 MGI--DNICELAARLLFSAVEWARNIPFFPDL 286
+ +++CE AARLLF +++WA+++P F L
Sbjct: 178 YEVATESVCESAARLLFMSIKWAKSVPAFSTL 209
>gi|297678833|ref|XP_002817264.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pongo
abelii]
Length = 385
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|444709054|gb|ELW50086.1| Nuclear receptor subfamily 2 group E member 1 [Tupaia chinensis]
Length = 441
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 236 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 295
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 296 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 350
>gi|73973687|ref|XP_532253.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 isoform 1
[Canis lupus familiaris]
gi|194216311|ref|XP_001502073.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Equus
caballus]
gi|335279315|ref|XP_003353327.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Sus
scrofa]
gi|190402236|gb|ACE77650.1| nuclear receptor subfamily 2, group E, member 1 homolog (predicted)
[Sorex araneus]
Length = 385
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|226526921|gb|ACO71279.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Dasypus novemcinctus]
Length = 385
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|183637194|gb|ACC64552.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Rhinolophus ferrumequinum]
Length = 385
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|4507537|ref|NP_003260.1| nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|281183082|ref|NP_001162457.1| nuclear receptor subfamily 2 group E member 1 [Papio anubis]
gi|388490051|ref|NP_001252896.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|114608752|ref|XP_527467.2| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Pan
troglodytes]
gi|332259804|ref|XP_003278973.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Nomascus
leucogenys]
gi|344264555|ref|XP_003404357.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Loxodonta
africana]
gi|403289711|ref|XP_003935987.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Saimiri
boliviensis boliviensis]
gi|426354159|ref|XP_004044535.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Gorilla
gorilla gorilla]
gi|426354161|ref|XP_004044536.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Gorilla gorilla gorilla]
gi|9910804|sp|Q9Y466.1|NR2E1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=hTll
gi|11141399|gb|AAG31945.1|AF220532_1 orphan nuclear receptor [Homo sapiens]
gi|15705907|gb|AAL05871.1|AF411525_1 nuclear receptor subfamily 2 group E member 1 [Homo sapiens]
gi|2292902|emb|CAA73725.1| Tailless protein [Homo sapiens]
gi|20380429|gb|AAH28031.1| Nuclear receptor subfamily 2, group E, member 1 [Homo sapiens]
gi|61358419|gb|AAX41565.1| nuclear receptor subfamily 2 group E member 1 [synthetic construct]
gi|119568770|gb|EAW48385.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_a
[Homo sapiens]
gi|164449656|gb|ABY56294.1| nuclear receptor subfamily 2, group E, member 1 (predicted) [Papio
anubis]
gi|166183798|gb|ABY84160.1| nuclear receptor subfamily 2, group E, member 1 (predicted)
[Callithrix jacchus]
gi|216409726|dbj|BAH02300.1| tailes-related receptor [Homo sapiens]
gi|261857884|dbj|BAI45464.1| nuclear receptor subfamily 2, group E, member 1 [synthetic
construct]
gi|325495503|gb|ADZ17357.1| nuclear receptor TLX [Homo sapiens]
gi|355562170|gb|EHH18802.1| hypothetical protein EGK_15469 [Macaca mulatta]
gi|380816050|gb|AFE79899.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
gi|380816052|gb|AFE79900.1| nuclear receptor subfamily 2 group E member 1 [Macaca mulatta]
Length = 385
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|22726205|ref|NP_689415.1| nuclear receptor subfamily 2 group E member 1 [Mus musculus]
gi|6094489|sp|Q64104.1|NR2E1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group E member 1;
AltName: Full=Nuclear receptor TLX; AltName:
Full=Protein tailless homolog; Short=Tll; Short=mTll
gi|2143507|pir||I53158 orphan nuclear receptor homolog - mouse
gi|998678|gb|AAB34090.1| orphan nuclear receptor homolog [Mus sp.]
gi|21668101|gb|AAM74229.1| nuclear receptor 2E1 [Mus musculus]
gi|34849469|gb|AAH57104.1| Nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
gi|74205430|dbj|BAE21029.1| unnamed protein product [Mus musculus]
gi|148673056|gb|EDL05003.1| nuclear receptor subfamily 2, group E, member 1 [Mus musculus]
Length = 385
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNTDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|395816268|ref|XP_003781627.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Otolemur
garnettii]
Length = 385
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|327261729|ref|XP_003215681.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Anolis carolinensis]
Length = 382
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 177 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 236
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 237 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 291
Score = 37.0 bits (84), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 234 SLLLRAEPYPTARYSQCMQPNNIMGI--DNICELAARLLFSAVEWARNIPFFPDL 286
SL+ A+P P + P + + +++CE AARLLF +++WA+++P F L
Sbjct: 152 SLVGLAQPTPKYPHEVSGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTL 206
>gi|354469258|ref|XP_003497047.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Cricetulus griseus]
Length = 518
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 73/115 (63%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 313 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 372
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G+++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 373 NTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 427
>gi|47077588|dbj|BAD18677.1| unnamed protein product [Homo sapiens]
gi|119568771|gb|EAW48386.1| nuclear receptor subfamily 2, group E, member 1, isoform CRA_b
[Homo sapiens]
Length = 422
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 217 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 276
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 277 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 331
>gi|284005564|ref|NP_001164794.1| nuclear receptor subfamily 2 group E member 1 [Oryctolagus
cuniculus]
gi|217038306|gb|ACJ76603.1| nuclear receptor subfamily 2 group E member 1 (predicted)
[Oryctolagus cuniculus]
Length = 385
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKVISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
>gi|410959792|ref|XP_003986483.1| PREDICTED: nuclear receptor subfamily 2 group E member 1 [Felis
catus]
Length = 422
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 217 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 276
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 277 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 331
>gi|395501668|ref|XP_003755213.1| PREDICTED: LOW QUALITY PROTEIN: photoreceptor-specific nuclear
receptor [Sarcophilus harrisii]
Length = 327
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
++I E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q S+PL PL
Sbjct: 137 ESIYETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPLESCPL 196
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
L+ +P ++++ ++ QE + + K+L VD E++C+KA+VLF R
Sbjct: 197 LSVP--DPTPGIQGKLMSAPIETQILQETIARFKSLTVDPTEFACMKALVLFKPETR 251
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
++I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 137 ESIYETSARLLFMAVKWAKNLPVFSNLPFRDQV 169
>gi|440904093|gb|ELR54654.1| Nuclear receptor subfamily 2 group E member 1, partial [Bos
grunniens mutus]
Length = 396
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 191 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 250
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 251 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 305
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 197 GPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNI 256
P F A+T D AA++A + + +SL A+P P + P +
Sbjct: 138 APAFFTAVTQLDPHGLELAAVSA------TPERQTLVSL---AQPTPKYPHEVNGTPMYL 188
Query: 257 MGI--DNICELAARLLFSAVEWARNIPFFPDL 286
+ +++CE AARLLF +++WA+++P F L
Sbjct: 189 YEVATESVCESAARLLFMSIKWAKSVPAFSTL 220
>gi|332023687|gb|EGI63911.1| Photoreceptor-specific nuclear receptor [Acromyrmex echinatior]
Length = 730
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 16/132 (12%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ + E +ARLLF AV+WA+N+P F L DQV LL VWSELF+LNA Q +PL +PL
Sbjct: 403 ETVYETSARLLFMAVKWAKNLPSFAGLPFRDQVILLEEVWSELFLLNAVQWCLPLESSPL 462
Query: 64 LAAA---------------GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSC 108
+AA GLH D +R + +++ KA+ VD AE++C
Sbjct: 463 FSAAELTALTLSPHPHPHSGLHLQTTTGKPSQVAAD-VRHLHDTLQRYKAVMVDPAEFAC 521
Query: 109 LKAIVLFTTGKR 120
+KAIVLF R
Sbjct: 522 MKAIVLFRPETR 533
>gi|163954969|ref|NP_001106668.1| nuclear receptor subfamily 2, group E, member 1 [Rattus norvegicus]
gi|163658507|gb|ABY28383.1| tailless-like protein [Rattus norvegicus]
Length = 385
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G+++ + ++ + I+ QE V + + L +D+ E++CLK V F
Sbjct: 240 NTLLAVSGMNSDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCTVTF 294
>gi|345487763|ref|XP_001606227.2| PREDICTED: photoreceptor-specific nuclear receptor [Nasonia
vitripennis]
Length = 551
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 21/136 (15%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
++ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL +P
Sbjct: 343 VETVYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAVQWCLPLESSP 402
Query: 63 LLAAA-----------------GLH-ASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSA 104
L +AA GLH SP +++V +R + + + K++ VD A
Sbjct: 403 LFSAAELSALTLSPVHPVHPHSGLHLPSPTKSNQVGV---DVRYLHDMLHRYKSIMVDPA 459
Query: 105 EYSCLKAIVLFTTGKR 120
E++C+KAI+LF R
Sbjct: 460 EFACMKAIILFRPETR 475
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 241 PYPTARYSQCMQPNNIM-------GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
P P R S C Q +M ++ + E +ARLLF AV+WA+N+P F L R V
Sbjct: 319 PQPQQR-SNCNQLPPVMPSIYSPASVETVYETSARLLFMAVKWAKNLPSFASLPFRDQV 376
>gi|307168984|gb|EFN61863.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 279
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 73/132 (55%), Gaps = 16/132 (12%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ + E +ARLLF AV+WA+N+P F L DQV LL VWSELF+LNA Q +PL +PL
Sbjct: 73 ETVYETSARLLFMAVKWAKNLPSFAGLPFRDQVILLEEVWSELFLLNAVQWCLPLESSPL 132
Query: 64 LAAA---------------GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSC 108
+AA GLH D +R + +++ KA+ VD AE++C
Sbjct: 133 FSAAELTALTLSPHPHPHSGLHLQTTTGKPSQVAAD-VRHLHDTLQRYKAVMVDPAEFAC 191
Query: 109 LKAIVLFTTGKR 120
+KAIVLF R
Sbjct: 192 MKAIVLFRPETR 203
>gi|3127936|emb|CAA06690.1| nuclear receptor [Tenebrio molitor]
Length = 489
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ I ICE +RLLF ++ W RNIP F L Q+ LLR W+ELF L +QCS L +
Sbjct: 264 LNIHYICESGSRLLFLSIHWTRNIPAFQYLTTETQITLLRGCWAELFTLGLAQCSQTLSL 323
Query: 61 APLLAA--AGLHA----SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +L+A + LH M+A +V DHI Q+ + L+VD EY+ LKAI L
Sbjct: 324 STILSALISHLHTLIAQDKMSATKVKQVSDHIVKLQDYANTMNRLNVDEHEYAYLKAITL 383
Query: 115 FTTGKRIFTGVLLKALHVDSAEYSCLKAIVLF 146
F+ + +LL+ HV+ + +A+ +
Sbjct: 384 FSADQ---PDILLRK-HVEKLQEKSFQALKTY 411
>gi|405974187|gb|EKC38851.1| Photoreceptor-specific nuclear receptor [Crassostrea gigas]
Length = 438
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 67/119 (56%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G + + E +ARLLF A+ WA+N+P F +L DQV LL WSELF+L A Q SMP+ +
Sbjct: 244 GQETMYECSARLLFVAIRWAKNLPSFANLPFRDQVILLEEAWSELFLLCAIQWSMPMETS 303
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLL M+ + + R+ QE + K VD AE++CLKAI LF R
Sbjct: 304 PLLMTHEAAQPQMSNIKTGSEYPDNRLLQEIFRRFKHTQVDPAEFACLKAIALFKPETR 362
>gi|270011038|gb|EFA07486.1| hormone receptor 51 [Tribolium castaneum]
Length = 470
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 71/121 (58%), Gaps = 13/121 (10%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ I E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q MPL V+
Sbjct: 283 ETIYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAIQWCMPLDVS-- 340
Query: 64 LAAAGLHASPMAADRVVAFMDH----IRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
ASP+ H +R+ + + + KA+HVD AE++CLKAIVLF +
Sbjct: 341 -------ASPLFNVNEHVKNGHSATDVRILADTLMRFKAIHVDPAEFACLKAIVLFRSET 393
Query: 120 R 120
R
Sbjct: 394 R 394
>gi|189238719|ref|XP_970391.2| PREDICTED: similar to Hormone receptor 51 CG16801-PA [Tribolium
castaneum]
Length = 393
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 71/121 (58%), Gaps = 13/121 (10%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ I E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q MPL V+
Sbjct: 206 ETIYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAIQWCMPLDVS-- 263
Query: 64 LAAAGLHASPMAADRVVAFMDH----IRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
ASP+ H +R+ + + + KA+HVD AE++CLKAIVLF +
Sbjct: 264 -------ASPLFNVNEHVKNGHSATDVRILADTLMRFKAIHVDPAEFACLKAIVLFRSET 316
Query: 120 R 120
R
Sbjct: 317 R 317
>gi|307199534|gb|EFN80135.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 538
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 73/131 (55%), Gaps = 14/131 (10%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL +PL
Sbjct: 332 ETVYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAVQWCLPLESSPL 391
Query: 64 LAAAGL-------HASPMAA-------DRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCL 109
+AA L H P + + +R + +++ KA+ VD AE++C+
Sbjct: 392 FSAAELTALTLSPHPHPHSGMHLQTTTGKPSQVAADVRHLHDTLQRYKAIMVDPAEFACM 451
Query: 110 KAIVLFTTGKR 120
KAIVLF R
Sbjct: 452 KAIVLFRPETR 462
>gi|156387775|ref|XP_001634378.1| predicted protein [Nematostella vectensis]
gi|156221460|gb|EDO42315.1| predicted protein [Nematostella vectensis]
Length = 351
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 70/108 (64%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
ELAA +LF+ V+WAR + F +L +DQ+ LL++ W++LF+L AS+ + L+V + A
Sbjct: 142 ELAANVLFAVVDWARKLTTFNNLMDSDQITLLKMAWTDLFLLEASRSPLQLYVQQMYATI 201
Query: 68 GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
++ + +V M++ R+FQEQ E+++ L +D E+ LK IVLF
Sbjct: 202 NAQTKQLSMEVIVKRMEYARLFQEQAERIRNLGMDMTEHFHLKCIVLF 249
>gi|348505631|ref|XP_003440364.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Oreochromis niloticus]
Length = 421
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+N+ E +ARLLF +V+WA+N+P F L DQV LL WSE+F+L A Q S+P+ PL
Sbjct: 231 ENVYETSARLLFMSVKWAKNLPVFAHLPFRDQVILLEEAWSEMFLLCAIQWSLPMDSCPL 290
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L+ L + P A+ + D +++ +E + KAL VD E++CLKAIVLF
Sbjct: 291 LSLPDL-SIPQQANISLLTAD-LQILEEVFSRFKALTVDPTEFACLKAIVLF 340
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+N+ E +ARLLF +V+WA+N+P F L R V
Sbjct: 231 ENVYETSARLLFMSVKWAKNLPVFAHLPFRDQV 263
>gi|291239171|ref|XP_002739506.1| PREDICTED: nuclear orphan receptor TR2/4-like [Saccoglossus
kowalevskii]
Length = 595
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +++ WSELF L ++CS + +
Sbjct: 380 LNVHYICESASRLLFLSMHWARSIPAFQALGQESHTTIVQKCWSELFTLGLAECSQAMAL 439
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +L A + ++ADRV M+HI QE V + L VDS+E++ LKAI L
Sbjct: 440 SAILTAIVNHLQTSVQQDKLSADRVKVVMEHIWKLQELVNSISKLQVDSSEFAYLKAITL 499
Query: 115 FTT 117
F+T
Sbjct: 500 FST 502
>gi|432861654|ref|XP_004069672.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Oryzias
latipes]
Length = 416
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
I+++ E +ARLLF +V+W +N+P F L DQV LL WSE+F+L Q S+P+
Sbjct: 224 SIESVYETSARLLFMSVKWTKNLPIFAHLPFRDQVILLEESWSEMFLLCVIQWSLPMDSC 283
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLL+ L SP +V +++ +E + KAL VD E++CLKAIVLF R
Sbjct: 284 PLLSLPEL--SPKQQAKVSPPTSDLQILEEVFNRFKALTVDPTEFACLKAIVLFKPEAR 340
>gi|260834489|ref|XP_002612243.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
gi|229297618|gb|EEN68252.1| hypothetical protein BRAFLDRAFT_155937 [Branchiostoma floridae]
Length = 375
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 66/114 (57%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E AARLL + W R+IP F L DQ LL+ W E+F+L +Q ++P+ L A
Sbjct: 174 EAAARLLNMTLHWLRSIPAFLTLSSHDQHLLLQSSWQEMFLLGLAQWALPMDPKQLAVEA 233
Query: 68 GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
G+ ADR+ F+ +++ QE + K L VD+ EY+CLK IVLF TG+ I
Sbjct: 234 GVPPDQSPADRLQTFLQQVQMLQETLHKFHQLQVDAVEYACLKGIVLFKTGETI 287
>gi|189233984|ref|XP_001813130.1| PREDICTED: similar to nuclear receptor [Tribolium castaneum]
gi|270015114|gb|EFA11562.1| hormone receptor in 78-like protein [Tribolium castaneum]
Length = 489
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 80/149 (53%), Gaps = 10/149 (6%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ I ICE +RLLF ++ W RNIP F L Q+ LLR W+ELF L +QCS L +
Sbjct: 265 LNIHYICESGSRLLFLSIHWTRNIPAFQYLSTETQITLLRGCWAELFTLGLAQCSQTLSL 324
Query: 61 APLLAA--AGLHA----SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +L+A + LH M+A +V DHI ++ + L+VD EY+ LKAI L
Sbjct: 325 STILSALISHLHTLIAQDKMSATKVKQVSDHIVKLKDYATTMNLLNVDEHEYAYLKAITL 384
Query: 115 FTTGKRIFTGVLLKALHVDSAEYSCLKAI 143
F+ + VLLK HV+ + + +
Sbjct: 385 FSADQ---PDVLLKK-HVEKLQEKSFQGL 409
>gi|242012996|ref|XP_002427209.1| Orphan nuclear receptor TR4, putative [Pediculus humanus corporis]
gi|212511501|gb|EEB14471.1| Orphan nuclear receptor TR4, putative [Pediculus humanus corporis]
Length = 565
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 74/122 (60%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCS--MPL 58
+ + +CE A RLLF ++ WAR+I F +L QVAL+R W ELF L SQCS +PL
Sbjct: 342 LNVHYVCESACRLLFLSIHWARSISAFQNLSHDLQVALVRRCWPELFALGLSQCSQILPL 401
Query: 59 H--VAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+AP++A + MAA R++ DHI E V ++ +L +D+ EY+ LKA+VL
Sbjct: 402 RAMLAPIIAYLRTAVTQDTMAAQRLIDITDHIFKLHEYVTRMVSLQIDNHEYAYLKALVL 461
Query: 115 FT 116
F+
Sbjct: 462 FS 463
>gi|45708743|gb|AAH51670.1| NR2C2 protein [Homo sapiens]
gi|313882494|gb|ADR82733.1| Unknown protein [synthetic construct]
Length = 530
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 400 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 459
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 460 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 519
Query: 115 FTTGK 119
F+ GK
Sbjct: 520 FSPGK 524
>gi|340709633|ref|XP_003393408.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
terrestris]
gi|350422440|ref|XP_003493165.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Bombus
impatiens]
Length = 540
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 14/131 (10%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL +PL
Sbjct: 334 ETVYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAVQWCLPLESSPL 393
Query: 64 LAAAGL-------HASPMAA-------DRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCL 109
+A L H P + + +R + +++ KA+ VD AE++C+
Sbjct: 394 FNSAELTALTLSPHPHPHSGIHMQTTTGKPSQVAADVRHLHDTLQRYKAVMVDPAEFACM 453
Query: 110 KAIVLFTTGKR 120
KAIVLF R
Sbjct: 454 KAIVLFRPETR 464
>gi|383861940|ref|XP_003706442.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Megachile
rotundata]
Length = 537
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 14/131 (10%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL +PL
Sbjct: 331 ETVYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAVQWCLPLESSPL 390
Query: 64 LAAAGLHASPMAADRVVAFMDH--------------IRVFQEQVEKLKALHVDSAEYSCL 109
+A L A ++ H +R + +++ KA+ VD AE++C+
Sbjct: 391 FNSAELTALTLSPHPHPHPGIHMQTTTGKPSQVAADVRHLHDTLQRYKAVMVDPAEFACM 450
Query: 110 KAIVLFTTGKR 120
KAIVLF R
Sbjct: 451 KAIVLFRPETR 461
>gi|328792134|ref|XP_396999.4| PREDICTED: photoreceptor-specific nuclear receptor [Apis mellifera]
gi|380028656|ref|XP_003698008.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Apis
florea]
Length = 538
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 14/131 (10%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL +PL
Sbjct: 332 ETVYETSARLLFMAVKWAKNLPSFASLPFRDQVILLEEAWSELFLLNAVQWCLPLESSPL 391
Query: 64 LAAAGL-------HASPMAA-------DRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCL 109
+A L H P + + +R + +++ KA+ VD AE++C+
Sbjct: 392 FNSAELTALTLSPHPHPHSGIHMQTTTGKPSQVAADVRHLHDTLQRYKAVMVDPAEFACM 451
Query: 110 KAIVLFTTGKR 120
KAIVLF R
Sbjct: 452 KAIVLFRPETR 462
>gi|348502671|ref|XP_003438891.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Oreochromis niloticus]
Length = 630
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ +++
Sbjct: 415 LNVHYICESASRLLFLSMHWARSIPAFSALGQEANTSLVRACWNELFTLGLAQCAHVMNL 474
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + + ++ +RV M+HI FQE + L DS EY+ LKAIVL
Sbjct: 475 STILAAIINHLQSSIQDDKLSGERVKQVMEHIWKFQEFCNSMTRLETDSYEYAYLKAIVL 534
Query: 115 FT 116
F+
Sbjct: 535 FS 536
>gi|156389440|ref|XP_001634999.1| predicted protein [Nematostella vectensis]
gi|156222088|gb|EDO42936.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 75/130 (57%), Gaps = 7/130 (5%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D + E A R+L+ V+W RNIP F DL DQ L+ WSELF+L+ SQ M + ++
Sbjct: 166 MDMMYESAIRVLYMTVKWVRNIPTFLDLPFRDQAILIEESWSELFILSLSQWDMAVDLSS 225
Query: 63 LLAAA---GLHASP-MAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT-- 116
L++AA + SP +DR M IR Q V +L+ VD EY+CLKAIVLF
Sbjct: 226 LVSAAYPQQMGLSPGHKSDRTPGSMSDIRNLQTVVSRLRTASVDQTEYACLKAIVLFKPD 285
Query: 117 -TGKRIFTGV 125
G R+++ V
Sbjct: 286 IRGLRLWSHV 295
>gi|62859085|ref|NP_001016207.1| nuclear receptor subfamily 2 group C member 1 [Xenopus (Silurana)
tropicalis]
gi|123892381|sp|Q28CK1.1|NR2C1_XENTR RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Developmental orphan receptor 2;
Short=DOR2; AltName: Full=Orphan nuclear receptor TR2;
AltName: Full=Testicular receptor 2
gi|89268137|emb|CAJ83740.1| nuclear receptor subfamily 2, group C, member 1; orphan receptor,
TR2-11; nuclear receptor subfamily 2, group H, member 1;
developmental orphan receptor 2 [Xenopus (Silurana)
tropicalis]
gi|114108029|gb|AAI23035.1| nr2c1 protein [Xenopus (Silurana) tropicalis]
Length = 636
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 421 LNVHYICESASRLLFLSMHWARSIPSFQSLGQENSISLVKACWNELFSLGLAQCCQVMNV 480
Query: 61 APLLAA--AGLHAS----PMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+LAA LH S ++AD+V MDHI QE + L VD EY+ LKAI L
Sbjct: 481 ETILAAFVNHLHNSMQHDKLSADKVKLVMDHIFKLQEFCNSMVKLSVDGYEYAYLKAIAL 540
Query: 115 FT 116
F+
Sbjct: 541 FS 542
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+ + ICE A+RLLF ++ WAR+IP F L + +
Sbjct: 421 LNVHYICESASRLLFLSMHWARSIPSFQSLGQENSI 456
>gi|184186086|ref|NP_001116968.1| orphan steroid hormone receptor 2 [Strongylocentrotus purpuratus]
gi|68566021|sp|Q26622.1|SHR2_STRPU RecName: Full=Orphan steroid hormone receptor 2; AltName:
Full=SpSHR2
gi|1054912|gb|AAB19174.1| orphan steroid hormone receptor 2 [Strongylocentrotus purpuratus]
gi|167859078|gb|ACA04474.1| Shr2 [Strongylocentrotus purpuratus]
Length = 583
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR++P F L ++++ WSELF L +QC+ + +
Sbjct: 361 LNVHYICESASRLLFLSMHWARSLPAFQVLSADTHTSMVQKCWSELFTLGLAQCAQAMAL 420
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +L A L ++ADRV A M+HI QE V L VD E++ LK IVL
Sbjct: 421 STILTAIVNHLQTSLQQDKLSADRVKAVMEHIWKLQEFVTTTSKLDVDQTEFAYLKTIVL 480
Query: 115 FT 116
F+
Sbjct: 481 FS 482
>gi|350424111|ref|XP_003493692.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 392
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +NI E AA+LLF AV WAR+I F L DQ LL WSELFVL A+Q + P+
Sbjct: 206 LPTENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVEE 265
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ L+ + ++++R +D +R +E + K L VD +EY+CLKAIVLF R
Sbjct: 266 STLV------PNDLSSERKETLVDEVRKLRELLAKCALLRVDHSEYACLKAIVLFKGESR 319
>gi|405966658|gb|EKC31918.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 707
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ W R+IP F L Q L++ WSELF L +QC+ + +
Sbjct: 448 LNVHYICETASRLLFLSMHWTRSIPAFHVLSQEVQTILVKSSWSELFTLGLAQCAQSMSL 507
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +L A L +A+RV +DHI Q ++ L+AL +DS E++ LKA+VL
Sbjct: 508 STILMAILNHLQTALQQDKNSAERVKLVIDHILKLQNYIQSLEALQIDSEEFAYLKALVL 567
Query: 115 FT 116
F+
Sbjct: 568 FS 569
>gi|340722756|ref|XP_003399768.1| PREDICTED: COUP transcription factor 1-like [Bombus terrestris]
Length = 392
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 6/117 (5%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+NI E AA+LLF AV WAR+I F L DQ LL WSELFVL A+Q + P+ + L
Sbjct: 209 ENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVDESTL 268
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ + ++++R +D +R +E + K L VD +EY+CLKAIVLF R
Sbjct: 269 V------PNDLSSERKETLVDEVRKLRELLAKCALLRVDHSEYACLKAIVLFKGESR 319
>gi|328787581|ref|XP_624042.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Apis
mellifera]
Length = 394
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 69/120 (57%), Gaps = 6/120 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +NI E AA+LLF AV WAR+I F L DQ LL WSELFVL A+Q + P+
Sbjct: 208 LPTENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVEE 267
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
A L+ + ++++R +D R +E + K L VD +EY+CLKAIVLF R
Sbjct: 268 AALV------PNDLSSERKETLVDEARKLRELLAKCALLRVDHSEYACLKAIVLFKGESR 321
>gi|380027402|ref|XP_003697414.1| PREDICTED: COUP transcription factor 2-like [Apis florea]
Length = 393
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+NI E AA+LLF AV WAR+I F L DQ LL WSELFVL A+Q + P+ A L
Sbjct: 210 ENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVEEATL 269
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ + ++++R +D R +E + K L VD +EY+CLKAIVLF R
Sbjct: 270 V------PNDLSSERKETLVDEARKLRELLGKCALLRVDHSEYACLKAIVLFKGESR 320
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHR 289
++C+ +I+ +NI E AA+LLF AV WAR+I F L +R
Sbjct: 198 TECVSTFSILPTENIYEFAAKLLFFAVRWARSIHSFLQLPYR 239
>gi|126336217|ref|XP_001366331.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Monodelphis domestica]
Length = 596
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QCS + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCSQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|149412644|ref|XP_001506287.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Ornithorhynchus anatinus]
Length = 596
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QCS + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCSQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLEIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|345494488|ref|XP_001604432.2| PREDICTED: orphan steroid hormone receptor 2 isoform 1 [Nasonia
vitripennis]
Length = 659
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ I ICE AARLLF +V WAR IP F L Q L+R W +LF L +QC+ L +
Sbjct: 449 LSIHYICESAARLLFLSVHWARGIPAFQSLPSEIQTTLVRCSWGQLFTLGLAQCAYTLSL 508
Query: 61 APLLA------AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L A + M A+++ + +HI Q+ V L L VDS EY+ LKA+ L
Sbjct: 509 PSILTWIINHLQASIAQEKMTANKIKSVTEHICRLQDCVSSLHKLQVDSVEYAYLKALTL 568
Query: 115 FTTGKRIFTGVLLKALHV 132
F+ + GV K + +
Sbjct: 569 FSADN-VLAGVWRKRVQI 585
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 201 FAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGID 260
A L GD+ + + N ++ LRA P P Y + I
Sbjct: 403 MAKLMAGDNINGSGDGDTEEDWNCGQLLFERHMHFELRA-PSPAPAY---------LSIH 452
Query: 261 NICELAARLLFSAVEWARNIPFFPDL 286
ICE AARLLF +V WAR IP F L
Sbjct: 453 YICESAARLLFLSVHWARGIPAFQSL 478
>gi|387017404|gb|AFJ50820.1| Nuclear receptor subfamily 2 group C member 1-A-like [Crotalus
adamanteus]
Length = 640
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L + ++L++ W+ELF L +QCS ++V
Sbjct: 425 LNVHYICESASRLLFLSMHWARSIPSFQALGQDNSISLVKACWNELFTLGLAQCSQVMNV 484
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +L A L ++ADR M+HI QE + L +D EY+ LKAIVL
Sbjct: 485 ATILTAFVNHLHNSLQQDKLSADRGKLVMEHIFKLQEFCNSMVKLCLDGYEYAYLKAIVL 544
Query: 115 FT 116
F+
Sbjct: 545 FS 546
>gi|332025246|gb|EGI65420.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 393
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+NI E AA+LLF AV WAR+I F L DQ LL WSELFVL A+Q + P+ L
Sbjct: 210 ENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVDETTL 269
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
++ + +R +D R +E + K AL VD +EY+CLKAIVLF R
Sbjct: 270 VSMD------LPTERREVLLDKARRLRELLAKCAALRVDHSEYACLKAIVLFKAESR 320
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 251 MQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHR 289
MQ +++ +NI E AA+LLF AV WAR+I F L +R
Sbjct: 201 MQGLSLLPTENIYEFAAKLLFFAVRWARSIHSFLQLPYR 239
>gi|395516672|ref|XP_003762511.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Sarcophilus harrisii]
Length = 629
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QCS + +
Sbjct: 414 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCSQVMSL 473
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 474 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 533
Query: 115 FT 116
F+
Sbjct: 534 FS 535
>gi|326911680|ref|XP_003202184.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Meleagris gallopavo]
Length = 562
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L + ++L++ W+ELF L +QCS ++V
Sbjct: 347 LNVHYICETASRLLFLSMHWARSIPSFQALGQDNSISLVKACWNELFTLGLAQCSQVMNV 406
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LAA L + DR M+HI QE + L +D EY+ LKAIVL
Sbjct: 407 ATILAAFVNHLHDSLQQDKLPTDRGKLVMEHIFKLQEFCNSMVKLCLDGYEYAYLKAIVL 466
Query: 115 FT 116
F+
Sbjct: 467 FS 468
>gi|345494486|ref|XP_003427303.1| PREDICTED: orphan steroid hormone receptor 2 isoform 2 [Nasonia
vitripennis]
gi|345494490|ref|XP_003427304.1| PREDICTED: orphan steroid hormone receptor 2 isoform 3 [Nasonia
vitripennis]
Length = 626
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ I ICE AARLLF +V WAR IP F L Q L+R W +LF L +QC+ L +
Sbjct: 416 LSIHYICESAARLLFLSVHWARGIPAFQSLPSEIQTTLVRCSWGQLFTLGLAQCAYTLSL 475
Query: 61 APLLA------AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L A + M A+++ + +HI Q+ V L L VDS EY+ LKA+ L
Sbjct: 476 PSILTWIINHLQASIAQEKMTANKIKSVTEHICRLQDCVSSLHKLQVDSVEYAYLKALTL 535
Query: 115 FTTGKRIFTGVLLKALHV 132
F+ + GV K + +
Sbjct: 536 FSADN-VLAGVWRKRVQI 552
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 201 FAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGID 260
A L GD+ + + N ++ LRA P P Y + I
Sbjct: 370 MAKLMAGDNINGSGDGDTEEDWNCGQLLFERHMHFELRA-PSPAPAY---------LSIH 419
Query: 261 NICELAARLLFSAVEWARNIPFFPDL 286
ICE AARLLF +V WAR IP F L
Sbjct: 420 YICESAARLLFLSVHWARGIPAFQSL 445
>gi|8394483|ref|NP_059019.1| nuclear receptor subfamily 2 group C member 2 [Rattus norvegicus]
gi|1730013|sp|P55094.1|NR2C2_RAT RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|538260|gb|AAA21475.1| TR4 orphan receptor [Rattus norvegicus]
Length = 596
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGHEYAYLKAIVL 500
Query: 115 FTTGKRIFTGV 125
F+ TG
Sbjct: 501 FSPDHPGLTGT 511
>gi|157115449|ref|XP_001658211.1| expressed protein (HR51) [Aedes aegypti]
gi|108876909|gb|EAT41134.1| AAEL007190-PA [Aedes aegypti]
Length = 594
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV-AP 62
+ I E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q MP+ A
Sbjct: 398 ETIYETSARLLFMAVKWAKNLPSFASLTFRDQVILLEESWSELFLLNAIQWCMPIDTSAC 457
Query: 63 LLAAAGLHASPMAADRVVA---FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
L + H S + V +RV + + + K++ VD AE++C+KAIVLF +
Sbjct: 458 TLFSLNEHCSSVNNSGVFKPGQLAQDLRVLNDTLCRFKSVMVDPAEFACMKAIVLFRSEA 517
Query: 120 R 120
R
Sbjct: 518 R 518
>gi|149036769|gb|EDL91387.1| rCG56527, isoform CRA_b [Rattus norvegicus]
Length = 607
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 414 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 473
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 474 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 533
Query: 115 FTTGKRIFTGV 125
F+ TG
Sbjct: 534 FSPDHPGLTGT 544
>gi|1710810|sp|P51129.1|RXRG_XENLA RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 470
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP+F DL + DQV LLR W+EL + + S S+ +
Sbjct: 273 VTNICHAADKQLFTLVEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGI 332
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 333 LL-ATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLFN 385
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC A + LF+ VEWA+ IP+F DL
Sbjct: 273 VTNICHAADKQLFTLVEWAKRIPYFSDL 300
>gi|74178793|dbj|BAE34041.1| unnamed protein product [Mus musculus]
Length = 596
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FTTGKRIFTGV 125
F+ TG
Sbjct: 501 FSPDHPGLTGT 511
>gi|149036768|gb|EDL91386.1| rCG56527, isoform CRA_a [Rattus norvegicus]
Length = 629
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 414 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 473
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 474 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 533
Query: 115 FTTGKRIFTGV 125
F+ TG
Sbjct: 534 FSPDHPGLTGT 544
>gi|391330852|ref|XP_003739866.1| PREDICTED: photoreceptor-specific nuclear receptor-like
[Metaseiulus occidentalis]
Length = 467
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 71/125 (56%), Gaps = 8/125 (6%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH---- 59
++I E +ARLLF A++WARN+P F +L DQV LL WSELFVL A Q +PL
Sbjct: 267 ESIYETSARLLFMAIKWARNLPSFANLPFRDQVILLEETWSELFVLCAIQWCLPLDSSTS 326
Query: 60 ----VAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+ PL ++ + ++ I+ QE + K +++ VD AE++CLKAI+LF
Sbjct: 327 THPSIHPLFDINEHMSTSATLKGNLGLLNSIKQLQEILSKFRSVCVDPAEFACLKAIILF 386
Query: 116 TTGKR 120
R
Sbjct: 387 RADAR 391
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
++I E +ARLLF A++WARN+P F +L R V
Sbjct: 267 ESIYETSARLLFMAIKWARNLPSFANLPFRDQV 299
>gi|327272700|ref|XP_003221122.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Anolis carolinensis]
Length = 641
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+I F L + ++L++ W+ELF+L +QCS ++V
Sbjct: 426 LNVHYICESASRLLFLSMHWARSISSFQALGQDNSISLVKACWNELFILGLAQCSQVMNV 485
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LAA L ++ADR M+HI QE + L +D EY+ LKAIVL
Sbjct: 486 ATILAAFVNHLHNSLQQDKLSADRGKLVMEHIFKLQEFCNSMVKLCLDGYEYAYLKAIVL 545
Query: 115 FT 116
F+
Sbjct: 546 FS 547
>gi|354465507|ref|XP_003495221.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Cricetulus griseus]
gi|344241619|gb|EGV97722.1| Nuclear receptor subfamily 2 group C member 2 [Cricetulus griseus]
Length = 596
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FTTGKRIFTGV 125
F+ TG
Sbjct: 501 FSPDHPGLTGT 511
>gi|149036770|gb|EDL91388.1| rCG56527, isoform CRA_c [Rattus norvegicus]
Length = 596
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FTTGKRIFTGV 125
F+ TG
Sbjct: 501 FSPDHPGLTGT 511
>gi|912822|gb|AAB33314.1| type II zinc finger DNA binding transcription factor [Mus sp.]
gi|148666900|gb|EDK99316.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a [Mus
musculus]
Length = 629
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 414 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 473
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 474 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 533
Query: 115 FTTGKRIFTGV 125
F+ TG
Sbjct: 534 FSPDHPGLTGT 544
>gi|67906168|ref|NP_035760.1| nuclear receptor subfamily 2 group C member 2 [Mus musculus]
gi|1351191|sp|P49117.1|NR2C2_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|885593|gb|AAA93150.1| orphan receptor TAK1 [Mus musculus]
gi|73909027|gb|AAI03684.1| Nr2c2 protein [Mus musculus]
gi|73909185|gb|AAI03685.1| Nr2c2 protein [Mus musculus]
gi|74210203|dbj|BAE23331.1| unnamed protein product [Mus musculus]
Length = 596
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FTTGKRIFTGV 125
F+ TG
Sbjct: 501 FSPDHPGLTGT 511
>gi|147902511|ref|NP_001088948.1| retinoid X receptor, gamma [Xenopus laevis]
gi|57032681|gb|AAH88915.1| LOC496325 protein [Xenopus laevis]
Length = 470
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP+F DL + DQV LLR W+EL + + S S+ +
Sbjct: 273 VTNICHAADKQLFTLVEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGI 332
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 333 LL-ATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLFN 385
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC A + LF+ VEWA+ IP+F DL
Sbjct: 273 VTNICHAADKQLFTLVEWAKRIPYFSDL 300
>gi|410986573|ref|XP_003999584.1| PREDICTED: retinoic acid receptor RXR-gamma [Felis catus]
Length = 463
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D AE CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKAELGCLRAIVLFN 378
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 189 QSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARY 247
Q CL G+ A S A A+ +GH + + L EP +
Sbjct: 197 QKCLVMGMKREAVQEERQRSRERAESEAECAS--SGHEDMPVERILEAELAVEPKTESYG 254
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 255 DMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|60360544|dbj|BAD90516.1| mKIAA4145 protein [Mus musculus]
Length = 363
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 148 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 207
Query: 61 APLLAAA------GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 208 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 267
Query: 115 FTTGKRIFTGV 125
F+ TG
Sbjct: 268 FSPDHPGLTGT 278
>gi|72099629|ref|XP_789465.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 457
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 69/121 (57%), Gaps = 4/121 (3%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
DN+ E+ ARLLF++V+WA+NI F L DQ+ LL W +LF++ Q ++PL L
Sbjct: 260 DNLLEVTARLLFTSVKWAKNITCFRLLPFRDQLILLEETWRDLFLMGMCQWAVPLESDAL 319
Query: 64 LAAAGLHAS----PMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
L + + S +A+ +R +E V KL+A+ VD E++CLKAI LF +
Sbjct: 320 LKSLAVSMSVKGVKTSAETTAELAAQVRYMKETVAKLRAMKVDFTEFACLKAIALFKSET 379
Query: 120 R 120
R
Sbjct: 380 R 380
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 206 NGDSAS--AASAAIA--AAGLNGHSSYLSSYISLLLRAEPY---PTA----RYSQCMQPN 254
GD +S ASA + ++G S Y ++ LL AE Y P A R +
Sbjct: 190 TGDKSSLTGASAPLPPPSSGFISTSVYYGTFYHSLLTAEHYNINPLALDAVRQDDGGEVG 249
Query: 255 NIMGI-----DNICELAARLLFSAVEWARNIPFF 283
+ G+ DN+ E+ ARLLF++V+WA+NI F
Sbjct: 250 RVKGLGTTSPDNLLEVTARLLFTSVKWAKNITCF 283
>gi|355786362|gb|EHH66545.1| hypothetical protein EGM_03558, partial [Macaca fascicularis]
Length = 572
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 357 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 416
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 417 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 476
Query: 115 FT 116
F+
Sbjct: 477 FS 478
>gi|431916906|gb|ELK16662.1| Nuclear receptor subfamily 2 group C member 2 [Pteropus alecto]
Length = 596
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|114585547|ref|XP_001158643.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 6
[Pan troglodytes]
gi|410222744|gb|JAA08591.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410261218|gb|JAA18575.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410287872|gb|JAA22536.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
gi|410349801|gb|JAA41504.1| nuclear receptor subfamily 2, group C, member 2 [Pan troglodytes]
Length = 615
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 400 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 459
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 460 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 519
Query: 115 FT 116
F+
Sbjct: 520 FS 521
>gi|402887043|ref|XP_003906915.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Papio anubis]
gi|403268297|ref|XP_003926214.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Saimiri boliviensis boliviensis]
Length = 648
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 433 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 492
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 493 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 552
Query: 115 FT 116
F+
Sbjct: 553 FS 554
>gi|441665232|ref|XP_003265071.2| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2 [Nomascus leucogenys]
Length = 648
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 433 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 492
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 493 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 552
Query: 115 FT 116
F+
Sbjct: 553 FS 554
>gi|397511829|ref|XP_003826267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Pan paniscus]
Length = 648
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 433 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 492
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 493 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 552
Query: 115 FT 116
F+
Sbjct: 553 FS 554
>gi|36950991|ref|NP_003289.2| nuclear receptor subfamily 2 group C member 2 [Homo sapiens]
gi|296225932|ref|XP_002758706.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Callithrix jacchus]
gi|119584617|gb|EAW64213.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|119584618|gb|EAW64214.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_a
[Homo sapiens]
gi|168278006|dbj|BAG10981.1| orphan nuclear receptor TR4 [synthetic construct]
gi|325588346|gb|ADZ31973.1| testicular nuclear receptor 4 [Homo sapiens]
gi|355564520|gb|EHH21020.1| hypothetical protein EGK_03993 [Macaca mulatta]
gi|380816092|gb|AFE79920.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
gi|383421225|gb|AFH33826.1| nuclear receptor subfamily 2 group C member 2 [Macaca mulatta]
Length = 615
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 400 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 459
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 460 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 519
Query: 115 FT 116
F+
Sbjct: 520 FS 521
>gi|400270861|gb|AFP75253.1| nuclear receptor subfamily 2 group C member 2, partial [Tupaia
belangeri]
Length = 566
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 376 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 435
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L VD EY+ LKAIVL
Sbjct: 436 STILAAIVNHLQNSMQEDKLSGDRIKQVMEHIWKLQEFCNSMARLDVDGYEYAYLKAIVL 495
Query: 115 FT 116
F+
Sbjct: 496 FS 497
>gi|291393486|ref|XP_002713082.1| PREDICTED: nuclear receptor subfamily 2, group C, member 2
[Oryctolagus cuniculus]
Length = 596
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|326924824|ref|XP_003208625.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Meleagris
gallopavo]
Length = 494
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDG- 328
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 329 ILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 382
>gi|426339581|ref|XP_004033724.1| PREDICTED: nuclear receptor subfamily 2 group C member 2, partial
[Gorilla gorilla gorilla]
Length = 616
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 401 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 460
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 461 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 520
Query: 115 FT 116
F+
Sbjct: 521 FS 522
>gi|395847192|ref|XP_003796267.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Otolemur garnettii]
gi|395847194|ref|XP_003796268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Otolemur garnettii]
Length = 596
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|322792862|gb|EFZ16695.1| hypothetical protein SINV_10759 [Solenopsis invicta]
Length = 397
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 65/117 (55%), Gaps = 6/117 (5%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+NI E AA+LLF AV WAR+I F L DQ LL WSELFVL A+Q + P+ L
Sbjct: 214 ENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVDETTL 273
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ + +R +D R +E + K AL VD +EY+CLKAIVLF R
Sbjct: 274 VPVD------LPIERREVLLDKARRLRELLAKCAALRVDHSEYACLKAIVLFKAESR 324
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 251 MQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRS 290
MQ +++ +NI E AA+LLF AV WAR+I F L +R
Sbjct: 205 MQGLSLLPTENIYEFAAKLLFFAVRWARSIHSFLQLPYRD 244
>gi|224094384|ref|XP_002188160.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 2
[Taeniopygia guttata]
Length = 563
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L + ++L++ W+ELF L +QCS ++V
Sbjct: 348 LNVHYICESASRLLFLSMHWARSIPSFQALGQDNSISLVKACWNELFTLGLAQCSQIMNV 407
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LAA L + DR M+H+ QE + L +D EY+ LKAIVL
Sbjct: 408 ATILAAFVNHLQGSLQQDKLPTDRGRLVMEHVFKLQEFCNSMVKLCLDGYEYAYLKAIVL 467
Query: 115 FT 116
F+
Sbjct: 468 FS 469
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 192 LPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCM 251
L L PG+ A N +S + A L G +S I L ++ + R +
Sbjct: 288 LAKALNPGESPACQNSESIDTS-----AQLLGGETSMNIVEIEGPLLSDAHVAFRLTMPS 342
Query: 252 QPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+ + + ICE A+RLLF ++ WAR+IP F L + +
Sbjct: 343 PMPDYLNVHYICESASRLLFLSMHWARSIPSFQALGQDNSI 383
>gi|149728246|ref|XP_001491100.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Equus caballus]
Length = 611
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 396 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 455
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 456 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 515
Query: 115 FT 116
F+
Sbjct: 516 FS 517
>gi|114585553|ref|XP_001158452.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 3
[Pan troglodytes]
gi|296225930|ref|XP_002758705.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Callithrix jacchus]
gi|297670033|ref|XP_002813184.1| PREDICTED: uncharacterized protein LOC100448384 isoform 1 [Pongo
abelii]
gi|390475359|ref|XP_003734943.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Callithrix jacchus]
gi|397511831|ref|XP_003826268.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Pan paniscus]
gi|402887045|ref|XP_003906916.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Papio anubis]
gi|403268295|ref|XP_003926213.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Saimiri boliviensis boliviensis]
gi|410036591|ref|XP_003950084.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Pan
troglodytes]
gi|1351190|sp|P49116.1|NR2C2_HUMAN RecName: Full=Nuclear receptor subfamily 2 group C member 2;
AltName: Full=Orphan nuclear receptor TAK1; AltName:
Full=Orphan nuclear receptor TR4; AltName:
Full=Testicular receptor 4
gi|758382|gb|AAC50118.1| hTAK1 [Homo sapiens]
gi|119584619|gb|EAW64215.1| nuclear receptor subfamily 2, group C, member 2, isoform CRA_b
[Homo sapiens]
gi|158254612|dbj|BAF83279.1| unnamed protein product [Homo sapiens]
Length = 596
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|432850560|ref|XP_004066811.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Oryzias latipes]
Length = 385
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 13 LLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHAS 72
LLF +V+WA+N+P F +L DQV LL WSELF+L A Q S+PL PLL+ L
Sbjct: 204 LLFMSVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPG 263
Query: 73 PMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
M +D +R+ QE + KAL VD E++CLKAIVLF R
Sbjct: 264 -MQGKTSYTGLD-LRLLQEAFSRFKALAVDPTEFACLKAIVLFKPETR 309
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 34 DQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQV 93
++V LL WSELF+L A Q S+PL PLL+ L M +D +R+ QE
Sbjct: 49 EKVILLEEAWSELFLLCAIQWSLPLDSCPLLSLPDLCPG-MQGKTSYTGLD-LRLLQEAF 106
Query: 94 EKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ KAL VD E++CLKAIVLF R
Sbjct: 107 SRFKALAVDPTEFACLKAIVLFKPETR 133
>gi|410951776|ref|XP_003982569.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Felis catus]
Length = 615
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 400 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 459
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 460 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 519
Query: 115 FT 116
F+
Sbjct: 520 FS 521
>gi|410951774|ref|XP_003982568.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Felis catus]
Length = 596
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|301771740|ref|XP_002921290.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Ailuropoda melanoleuca]
Length = 611
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 396 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 455
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 456 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 515
Query: 115 FT 116
F+
Sbjct: 516 FS 517
>gi|149728243|ref|XP_001491080.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Equus caballus]
Length = 596
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|281347589|gb|EFB23173.1| hypothetical protein PANDA_010183 [Ailuropoda melanoleuca]
Length = 572
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 357 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 416
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 417 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 476
Query: 115 FT 116
F+
Sbjct: 477 FS 478
>gi|383858852|ref|XP_003704913.1| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Megachile rotundata]
Length = 392
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 67/117 (57%), Gaps = 6/117 (5%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+NI E AA+LLF AV WAR+I F L DQ LL WSELFVL A+Q + P+ L
Sbjct: 209 ENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFPVEETTL 268
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ + + ++R +D +R +E + K L VD +EY+CLKAIVLF R
Sbjct: 269 V------PNDLLSERKEVLVDEVRRLRELLGKCALLRVDHSEYACLKAIVLFKGEAR 319
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 239 AEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRS 290
A P + S+ M +I+ +NI E AA+LLF AV WAR+I F L +R
Sbjct: 188 APPIINSASSEYMTNFSILPTENIYEFAAKLLFFAVRWARSIHSFLQLPYRD 239
>gi|327265992|ref|XP_003217791.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Anolis carolinensis]
Length = 629
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 6/123 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 414 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 473
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKA+VL
Sbjct: 474 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMTKLDIDGYEYAYLKAVVL 533
Query: 115 FTT 117
F++
Sbjct: 534 FSS 536
>gi|297263119|ref|XP_002798750.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Macaca mulatta]
Length = 648
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 433 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 492
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 493 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 552
Query: 115 FTT 117
F +
Sbjct: 553 FXS 555
>gi|216409724|dbj|BAH02299.1| nuclear receptor subfamily 2, group C, member 2 [Homo sapiens]
Length = 596
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|344275981|ref|XP_003409789.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Loxodonta
africana]
Length = 616
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 401 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 460
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 461 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 520
Query: 115 FT 116
F+
Sbjct: 521 FS 522
>gi|432110921|gb|ELK34395.1| Nuclear receptor subfamily 2 group C member 2 [Myotis davidii]
Length = 596
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|345786121|ref|XP_541755.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Canis
lupus familiaris]
Length = 596
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|355707885|gb|AES03095.1| nuclear receptor subfamily 2, group C, member 2 [Mustela putorius
furo]
Length = 609
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 394 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 453
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 454 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 513
Query: 115 FT 116
F+
Sbjct: 514 FS 515
>gi|417411925|gb|JAA52381.1| Putative nuclear receptor subfamily protein 2 group c member 2,
partial [Desmodus rotundus]
Length = 610
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 395 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 454
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 455 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 514
Query: 115 FT 116
F+
Sbjct: 515 FS 516
>gi|2529508|gb|AAB81178.1| developmental orphan receptor 2 [Xenopus laevis]
Length = 542
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L + ++L++ W+ELF L +QCS ++V
Sbjct: 395 LNVHYICESASRLLFLSMHWARSIPSFQSLGQENSISLVKACWNELFSLGLAQCSQVMNV 454
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+LAA + +++D+V DHI QE + L VD EY+ LKAI L
Sbjct: 455 ETILAAFVNHLQNSMQHDKLSSDKVKLVTDHIFKLQEFCNSMVKLCVDGYEYAYLKAIAL 514
Query: 115 FT 116
F+
Sbjct: 515 FS 516
>gi|149755798|ref|XP_001492700.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Equus caballus]
Length = 539
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 377
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 244 LAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|147899545|ref|NP_001084198.1| nuclear receptor subfamily 2 group C member 1-A [Xenopus laevis]
gi|82201033|sp|Q6GN21.1|N2C1A_XENLA RecName: Full=Nuclear receptor subfamily 2 group C member 1-A;
AltName: Full=Developmental orphan receptor 2-A;
Short=DOR2-A; Short=xDOR2-A; AltName: Full=Orphan
nuclear receptor TR2-A; AltName: Full=Testicular
receptor 2-A
gi|49118996|gb|AAH73700.1| DOR2 protein [Xenopus laevis]
Length = 637
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L + ++L++ W+ELF L +QCS ++V
Sbjct: 422 LNVHYICESASRLLFLSMHWARSIPSFQSLGQENSISLVKACWNELFSLGLAQCSQVMNV 481
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+LAA + +++D+V DHI QE + L VD EY+ LKAI L
Sbjct: 482 ETILAAFVNHLQNSMQHDKLSSDKVKLVTDHIFKLQEFCNSMVKLCVDGYEYAYLKAIAL 541
Query: 115 FT 116
F+
Sbjct: 542 FS 543
>gi|297263121|ref|XP_001091445.2| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Macaca mulatta]
Length = 596
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FTT 117
F +
Sbjct: 501 FXS 503
>gi|334321961|ref|XP_001370409.2| PREDICTED: retinoic acid receptor RXR-gamma-like [Monodelphis
domestica]
Length = 473
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 276 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 335
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 336 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 387
>gi|351696221|gb|EHA99139.1| Retinoic acid receptor RXR-gamma [Heterocephalus glaber]
Length = 463
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 189 QSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARY 247
Q CL G+ A S A A+ +GH + + L EP +
Sbjct: 197 QKCLVMGMKREAVQEERQRSRERAESEAKGAS--SGHEDMPVERILEAELAVEPKTESYG 254
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 255 DMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|350591455|ref|XP_003483272.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 2
[Sus scrofa]
Length = 609
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 394 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 453
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 454 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 513
Query: 115 FT 116
F+
Sbjct: 514 FS 515
>gi|149637974|ref|XP_001510105.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Ornithorhynchus anatinus]
Length = 561
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L + ++L++ W+ELF L +QCS ++V
Sbjct: 346 LNVHYICESASRLLFLSMHWARSIPSFQALGQENSISLVKACWNELFTLGLAQCSQVMNV 405
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +L A + L ++++R M+HI QE + L +D EY+ LKAIVL
Sbjct: 406 ATILTAFVNHLHSSLQQDKLSSERGKLVMEHIFKLQEFCNSMVKLCLDGYEYAYLKAIVL 465
Query: 115 FT 116
F+
Sbjct: 466 FS 467
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 192 LPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCM 251
L L PG+ AA N AS + A G SS I L ++ + R +
Sbjct: 285 LAKALNPGESAACQNSVENMEASVHLIA----GESSMNIVEIEGPLLSDAHVAFRLTMPS 340
Query: 252 QPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+ + ICE A+RLLF ++ WAR+IP F L + +
Sbjct: 341 PMPEYLNVHYICESASRLLFLSMHWARSIPSFQALGQENSI 381
>gi|350591453|ref|XP_003132435.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 isoform 1
[Sus scrofa]
Length = 596
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|410908455|ref|XP_003967706.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-A-like
[Takifugu rubripes]
Length = 601
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTD-QVALLRLVWSELFVLNASQCSMPLH 59
+ ++ ICE A+RLLF ++ WAR+IP F L D + L++ W+ELF L +QCS ++
Sbjct: 386 LNVNYICESASRLLFLSMHWARSIPAFQTLCGQDNDINLMKACWNELFALGMAQCSSIMN 445
Query: 60 VAPLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
V +L+A L ++A+RV M+HI QE + L DS EY+ LKAIV
Sbjct: 446 VGTILSAIINHLQTSLQEEKLSAERVKLVMEHIWRMQEFCNSMLKLSPDSYEYAYLKAIV 505
Query: 114 LFT 116
LF+
Sbjct: 506 LFS 508
>gi|395530718|ref|XP_003767435.1| PREDICTED: retinoic acid receptor RXR-gamma [Sarcophilus harrisii]
Length = 470
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 273 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVTVQDGI 332
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 333 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 385
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 251 LAVEPKTESYGNTNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 300
>gi|296229938|ref|XP_002760488.1| PREDICTED: retinoic acid receptor RXR-gamma [Callithrix jacchus]
Length = 463
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 189 QSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARY 247
Q CL G+ A S A A+ NGH + + L EP +
Sbjct: 197 QKCLVMGMKREAVQEERQRSRERAESEAECAS--NGHEDMPVERILEAELAVEPKTESYG 254
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 255 DMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|216409720|dbj|BAH02297.1| retinoid X receptor-gamma [Homo sapiens]
Length = 463
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 244 LAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|149058123|gb|EDM09280.1| retinoid X receptor gamma, isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLFN 378
>gi|332219399|ref|XP_003258843.1| PREDICTED: retinoic acid receptor RXR-gamma [Nomascus leucogenys]
Length = 463
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 189 QSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARY 247
Q CL G+ A S A A G GH + + L EP T Y
Sbjct: 197 QKCLVMGMKREAVQEERQRSRERAESEAECATG--GHEDMPVERILEAELAVEPK-TESY 253
Query: 248 SQCMQPNNIMG-IDNICELAARLLFSAVEWARNIPFFPDL 286
N+ + NIC A + LF+ VEWA+ IP F DL
Sbjct: 254 GDMNTENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|449274063|gb|EMC83368.1| Nuclear receptor subfamily 2 group C member 2 [Columba livia]
Length = 596
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|115495279|ref|NP_001068876.1| retinoic acid receptor RXR-gamma [Bos taurus]
gi|119367365|sp|Q0VC20.1|RXRG_BOVIN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|111305288|gb|AAI20392.1| Retinoid X receptor, gamma [Bos taurus]
gi|296489911|tpg|DAA32024.1| TPA: retinoic acid receptor RXR-gamma [Bos taurus]
Length = 463
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 377
>gi|403272547|ref|XP_003928117.1| PREDICTED: retinoic acid receptor RXR-gamma [Saimiri boliviensis
boliviensis]
Length = 463
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
>gi|395825135|ref|XP_003785797.1| PREDICTED: retinoic acid receptor RXR-gamma [Otolemur garnettii]
Length = 463
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%)
Query: 209 SASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAAR 268
S A + + AG + + L EP + M+ + + NIC A +
Sbjct: 216 SRERAESEVECAGGGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAADK 275
Query: 269 LLFSAVEWARNIPFFPDL 286
LF+ VEWA+ IP F DL
Sbjct: 276 QLFTLVEWAKRIPHFSDL 293
>gi|167016572|sp|Q0GFF6.2|RXRG_PIG RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
Length = 463
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 377
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 189 QSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARY 247
Q CL G+ A S A A+ +GH + + L EP +
Sbjct: 197 QKCLVMGMKREAVQEERQRSRERAESEAECAS--SGHEDMPVERILEAELAVEPKTESYG 254
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 255 DMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|383872390|ref|NP_001244539.1| retinoic acid receptor RXR-gamma [Macaca mulatta]
gi|355558991|gb|EHH15771.1| hypothetical protein EGK_01907 [Macaca mulatta]
gi|355746155|gb|EHH50780.1| hypothetical protein EGM_01657 [Macaca fascicularis]
gi|380815424|gb|AFE79586.1| retinoic acid receptor RXR-gamma isoform a [Macaca mulatta]
Length = 463
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 244 LAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|197101785|ref|NP_001124824.1| retinoic acid receptor RXR-gamma [Pongo abelii]
gi|402858038|ref|XP_003893537.1| PREDICTED: retinoic acid receptor RXR-gamma [Papio anubis]
gi|75062013|sp|Q5REL6.1|RXRG_PONAB RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|55726030|emb|CAH89791.1| hypothetical protein [Pongo abelii]
Length = 463
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 244 LAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|417401446|gb|JAA47609.1| Putative retinoic acid receptor rxr-alpha [Desmodus rotundus]
Length = 467
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 328
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ +H+D E CL+AIVLF
Sbjct: 329 ILLATGLHVHRSSAHSAGVGAIFD--RVLTELVSKMRDMHMDKTELGCLRAIVLFN 382
>gi|348565839|ref|XP_003468710.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Cavia porcellus]
Length = 451
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 254 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 313
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 314 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 365
>gi|444705543|gb|ELW46965.1| Nuclear receptor subfamily 2 group C member 2 [Tupaia chinensis]
Length = 606
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 391 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 450
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L VD EY+ LKAIVL
Sbjct: 451 STILAAIVNHLQNSMQEDKLSGDRIKQVMEHIWKLQEFCNSMARLDVDGYEYAYLKAIVL 510
Query: 115 FT 116
F+
Sbjct: 511 FS 512
>gi|5902068|ref|NP_008848.1| retinoic acid receptor RXR-gamma isoform a [Homo sapiens]
gi|114561087|ref|XP_513962.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 2 [Pan
troglodytes]
gi|397508368|ref|XP_003824630.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan paniscus]
gi|1350913|sp|P48443.1|RXRG_HUMAN RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|1053069|gb|AAA80681.1| retinoid X receptor-gamma [Homo sapiens]
gi|15082315|gb|AAH12063.1| Retinoid X receptor, gamma [Homo sapiens]
gi|48145527|emb|CAG32986.1| RXRG [Homo sapiens]
gi|119611151|gb|EAW90745.1| retinoid X receptor, gamma [Homo sapiens]
gi|190689913|gb|ACE86731.1| retinoid X receptor, gamma protein [synthetic construct]
gi|190691285|gb|ACE87417.1| retinoid X receptor, gamma protein [synthetic construct]
gi|261858858|dbj|BAI45951.1| retinoid X receptor, gamma [synthetic construct]
gi|325495501|gb|ADZ17356.1| retinoid X nuclear receptor gamma variant 1 [Homo sapiens]
gi|326205168|dbj|BAJ83970.1| retinoic acid receptor RXR-gamma [Homo sapiens]
Length = 463
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 244 LAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|45384256|ref|NP_990625.1| retinoic acid receptor RXR-gamma [Gallus gallus]
gi|133700|sp|P28701.1|RXRG_CHICK RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|63496|emb|CAA41743.1| retinoic acid receptor [Gallus gallus]
Length = 467
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 329
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 330 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 382
>gi|325930187|gb|ADZ45552.1| retinoid X receptor gamma [Taeniopygia guttata]
Length = 468
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 271 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 330
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 331 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 383
>gi|371940918|ref|NP_001243138.1| retinoic acid receptor RXR-gamma [Taeniopygia guttata]
Length = 468
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 271 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 330
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 331 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 383
>gi|189066517|dbj|BAG35767.1| unnamed protein product [Homo sapiens]
Length = 463
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 244 LAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|301756739|ref|XP_002914218.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Ailuropoda
melanoleuca]
Length = 463
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 244 LAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|449266899|gb|EMC77883.1| Nuclear receptor subfamily 2 group C member 1 [Columba livia]
Length = 640
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L + ++L++ W+ELF L +QCS ++V
Sbjct: 425 LNVHYICESASRLLFLSMHWARSIPSFQALGQDNSISLVKACWNELFTLGLAQCSQVMNV 484
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +L A L + DR M+HI QE + L +D EY+ LKAIVL
Sbjct: 485 ATILTAFVNHLHGSLQQDKLPTDRGKLVMEHIFKLQEFCNSMVKLCLDGYEYAYLKAIVL 544
Query: 115 FT 116
F+
Sbjct: 545 FS 546
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 192 LPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCM 251
L L PG+ AA N DS A I G +S I L ++ + R +
Sbjct: 365 LAKALNPGESAACQNSDSIEAGVQLIG-----GETSMNIVEIEGPLLSDAHVAFRLTMPS 419
Query: 252 QPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+ + ICE A+RLLF ++ WAR+IP F L + +
Sbjct: 420 PMPEYLNVHYICESASRLLFLSMHWARSIPSFQALGQDNSI 460
>gi|426332559|ref|XP_004027871.1| PREDICTED: retinoic acid receptor RXR-gamma [Gorilla gorilla
gorilla]
Length = 463
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 244 LAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|354486852|ref|XP_003505591.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-gamma-like [Cricetulus griseus]
Length = 463
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 244 LAVEPKTESYGDRNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|440910600|gb|ELR60380.1| Retinoic acid receptor RXR-gamma, partial [Bos grunniens mutus]
Length = 447
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 250 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 309
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 310 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 361
>gi|344286664|ref|XP_003415077.1| PREDICTED: retinoic acid receptor RXR-gamma-like [Loxodonta
africana]
Length = 489
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 292 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 351
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 352 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 404
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 189 QSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARY 247
Q CL G+ A S A +A+ NGH + + L EP +
Sbjct: 223 QKCLVMGMKREAVQEERQRSRERAESEAESAS--NGHEDMPVERILEAELAVEPKTESYG 280
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 281 DMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 319
>gi|300796794|ref|NP_001178990.1| nuclear receptor subfamily 2 group C member 2 [Bos taurus]
gi|296474669|tpg|DAA16784.1| TPA: nuclear receptor subfamily 2 group C member 2-like [Bos
taurus]
gi|440903574|gb|ELR54213.1| Nuclear receptor subfamily 2 group C member 2 [Bos grunniens mutus]
Length = 611
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 396 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 455
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 456 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMARLDIDGYEYAYLKAIVL 515
Query: 115 FT 116
F+
Sbjct: 516 FS 517
>gi|426217053|ref|XP_004002768.1| PREDICTED: retinoic acid receptor RXR-gamma [Ovis aries]
Length = 463
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 377
>gi|344236823|gb|EGV92926.1| Retinoic acid receptor RXR-gamma [Cricetulus griseus]
Length = 414
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 217 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDG- 275
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+L A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 276 ILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 328
>gi|74006096|ref|XP_536146.2| PREDICTED: retinoic acid receptor RXR-gamma isoform 1 [Canis lupus
familiaris]
Length = 463
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
>gi|426249719|ref|XP_004018597.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Ovis
aries]
Length = 596
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAAA------GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMARLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|6677829|ref|NP_033133.1| retinoic acid receptor RXR-gamma isoform 1 [Mus musculus]
gi|1350914|sp|P28705.2|RXRG_MOUSE RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|200882|gb|AAA40082.1| retinoid X receptor-gamma [Mus musculus]
gi|386367|gb|AAB27244.1| retinoid-X receptor-gamma isoform 1 [Mus sp.]
gi|34849539|gb|AAH58401.1| Retinoid X receptor gamma [Mus musculus]
gi|148707231|gb|EDL39178.1| retinoid X receptor gamma [Mus musculus]
Length = 463
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
>gi|348554859|ref|XP_003463242.1| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Cavia
porcellus]
Length = 596
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ +RV M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGERVKQVMEHIWKLQEFCNSMARLEIDGYEYAYLKAIVL 500
Query: 115 FTTGKRIFTGV 125
F+ TG
Sbjct: 501 FSPDHPGLTGT 511
>gi|226432209|gb|ACO55650.1| retinoid X receptor beta [Paralichthys olivaceus]
Length = 417
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +LQ+ DQV LLR W+EL + + S S+ +
Sbjct: 220 VTNICQAADKQLFTLVEWAKRIPHFSELQLDDQVILLRAGWNELLIASFSHRSISVKDGI 279
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D +E CL+AI+LF
Sbjct: 280 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKSELGCLRAIILFN 332
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
PN+ + NIC+ A + LF+ VEWA+ IP F +LQ
Sbjct: 216 PND--PVTNICQAADKQLFTLVEWAKRIPHFSELQ 248
>gi|449268313|gb|EMC79183.1| Retinoic acid receptor RXR-gamma, partial [Columba livia]
Length = 451
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 254 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 313
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 314 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 366
>gi|61657903|ref|NP_113953.1| retinoic acid receptor RXR-gamma [Rattus norvegicus]
gi|81888393|sp|Q5BJR8.1|RXRG_RAT RecName: Full=Retinoic acid receptor RXR-gamma; AltName:
Full=Nuclear receptor subfamily 2 group B member 3;
AltName: Full=Retinoid X receptor gamma
gi|60551535|gb|AAH91363.1| Retinoid X receptor gamma [Rattus norvegicus]
gi|149058122|gb|EDM09279.1| retinoid X receptor gamma, isoform CRA_a [Rattus norvegicus]
Length = 463
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLF 377
>gi|405966252|gb|EKC31559.1| Nuclear receptor subfamily 2 group C member 2 [Crassostrea gigas]
Length = 622
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E AA+LLF +V+WA+NIP F L DQ LL W ELFVL+A+Q S+ + + LL+A
Sbjct: 434 ETAAKLLFMSVKWAKNIPSFLQLPFRDQAILLEESWCELFVLSAAQWSLNIDIGFLLSAN 493
Query: 68 GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
G ++ +R Q+ + +L + +DS EY+CLKA++LF
Sbjct: 494 GYTLDGPKMEKTTLMSLQLRQLQDIIYRLNGIRLDSTEYACLKALLLF 541
>gi|281348859|gb|EFB24443.1| hypothetical protein PANDA_002085 [Ailuropoda melanoleuca]
Length = 447
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 250 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 309
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 310 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 362
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 189 QSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARY 247
Q CL G+ A S A A+ +GH + + L EP +
Sbjct: 181 QKCLVMGMKREAVQEERQRSRERAESEAECAS--SGHEDMPVERILEAELAVEPKTESYG 238
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 239 DMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 277
>gi|350400753|ref|XP_003485947.1| PREDICTED: hypothetical protein LOC100747039 [Bombus impatiens]
Length = 992
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ I ICE AARLLF +V WAR IP F L Q L+R W +LF L +QC+ L +
Sbjct: 376 LSIHYICESAARLLFLSVHWARGIPAFQALPSEVQTTLVRTSWGQLFTLGLAQCAYTLSL 435
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L + A + + A +V + +HI Q+ V L L VDS EY+ LKA+ L
Sbjct: 436 PSILTSIINHLQASIAQEKITASKVKSVTEHICRLQDCVSSLHKLQVDSVEYAYLKALTL 495
Query: 115 FTTGKRIFTGVLLKALHV 132
F+ + GV K + V
Sbjct: 496 FSADN-VLAGVWRKKVEV 512
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFF 283
+ I ICE AARLLF +V WAR IP F
Sbjct: 376 LSIHYICESAARLLFLSVHWARGIPAF 402
>gi|170065210|ref|XP_001867845.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167882297|gb|EDS45680.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 505
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV-AP 62
+ I E +ARLLF AV+WA+N+P F L DQV LL W+ELF+LNA Q MP+ A
Sbjct: 309 ETIYETSARLLFMAVKWAKNLPSFASLTFRDQVILLEESWAELFLLNAIQWCMPIETSAC 368
Query: 63 LLAAAGLHASPMAADRVVA---FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
L + H S + + +RV + + + K++ VD AE++C+KAIVLF +
Sbjct: 369 TLFSLNEHCSSVNNSGIFKPGQLAQDLRVLNDTLCRFKSVMVDPAEFACMKAIVLFRSEA 428
Query: 120 R 120
R
Sbjct: 429 R 429
>gi|432856175|ref|XP_004068390.1| PREDICTED: retinoic acid receptor RXR-gamma-B [Oryzias latipes]
Length = 455
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 258 VTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGI 317
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 318 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFN 370
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F DL
Sbjct: 258 VTNICQAADKQLFTLVEWAKRIPHFSDL 285
>gi|351695773|gb|EHA98691.1| Nuclear receptor subfamily 2 group C member 2 [Heterocephalus
glaber]
Length = 616
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 401 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 460
Query: 61 APLLAAA------GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ +RV M+HI QE + L +D EY+ LKAIVL
Sbjct: 461 STILAAIVNHLQNSIQEDKLSGERVKQVMEHIWKLQEFCNSMARLEIDGYEYAYLKAIVL 520
Query: 115 FTTGKRIFTGV 125
F+ TG
Sbjct: 521 FSPDHPGLTGT 531
>gi|47213822|emb|CAF95413.1| unnamed protein product [Tetraodon nigroviridis]
Length = 290
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 173 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIGIKDGI 232
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF G +
Sbjct: 233 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPGNK 289
>gi|348533848|ref|XP_003454416.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Oreochromis niloticus]
Length = 412
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+PL
Sbjct: 217 VSNICQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIPLKDGV 276
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLA+ S +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 277 LLASELQRDSAHSAG-VGAIFD--RVLTELVNKMRDMQMDKIELGCLRAIVLFN 327
>gi|40886675|gb|AAR96256.1| retinoid X receptor gamma [Sus scrofa]
Length = 431
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 234 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 293
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 294 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 345
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 189 QSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARY 247
Q CL G+ A S A A+ +GH + + L EP +
Sbjct: 165 QKCLVMGMKREAVQEERQRSRERAESEAECAS--SGHEDMPVERILEAELAVEPKTESYG 222
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 223 DMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 261
>gi|16580817|dbj|BAB71759.1| retinoid X receptor gamma [Paralichthys olivaceus]
Length = 293
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +LQ+ DQV LLR W+EL + + S S+ +
Sbjct: 109 VTNICQAADKQLFTLVEWAKRIPHFSELQLDDQVILLRAGWNELLIASFSHRSISVKDGI 168
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D +E CL+AI+LF
Sbjct: 169 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKSELGCLRAIILFN 221
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQ 287
+ NIC+ A + LF+ VEWA+ IP F +LQ
Sbjct: 109 VTNICQAADKQLFTLVEWAKRIPHFSELQ 137
>gi|363738759|ref|XP_414462.3| PREDICTED: nuclear receptor subfamily 2 group C member 2 [Gallus
gallus]
Length = 629
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 414 LNVHYICESASRLLFLSMHWARSIPAFQALGQECNTSLVRACWNELFTLGLAQCAQVMSL 473
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + + +D EY+ LKAIVL
Sbjct: 474 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKIDIDGYEYAYLKAIVL 533
Query: 115 FT 116
F+
Sbjct: 534 FS 535
>gi|113197752|gb|AAI21596.1| LOC779621 protein [Xenopus (Silurana) tropicalis]
Length = 452
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 255 VTNICHAADKQLFTLVEWAKRIPHFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGI 314
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 315 LL-ATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMEMDKSELGCLRAIVLFN 367
>gi|54026|emb|CAA46964.1| retinoid X receptor-gamma [Mus musculus]
Length = 463
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLA +H S + V + D RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LLATGLHVHRSSAHSRGVGSIFD--RVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
>gi|2780196|emb|CAA11109.1| retinoic acid X receptor gamma-1 [Rattus norvegicus]
Length = 322
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 187 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 246
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 247 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLFN 299
>gi|431898965|gb|ELK07335.1| Retinoic acid receptor RXR-alpha [Pteropus alecto]
Length = 439
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 242 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 300
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ +H+D E CL+AIVLF
Sbjct: 301 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMHMDKTELGCLRAIVLFN 354
>gi|301608498|ref|XP_002933799.1| PREDICTED: retinoic acid receptor RXR-gamma [Xenopus (Silurana)
tropicalis]
Length = 468
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 271 VTNICHAADKQLFTLVEWAKRIPHFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGI 330
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 331 LL-ATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMEMDKSELGCLRAIVLFN 383
>gi|311772275|pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
gi|311772276|pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 34 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 93
Query: 61 APLLAAA------GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 94 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 153
Query: 115 FT 116
F+
Sbjct: 154 FS 155
>gi|326928210|ref|XP_003210274.1| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Meleagris gallopavo]
Length = 592
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L L+R W+ELF L +QC+ + +
Sbjct: 377 LNVHYICESASRLLFLSMHWARSIPAFQALGQECNTGLVRACWNELFTLGLAQCAQVMSL 436
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + + +D EY+ LKAIVL
Sbjct: 437 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKIDIDGYEYAYLKAIVL 496
Query: 115 FT 116
F+
Sbjct: 497 FS 498
>gi|32169341|emb|CAD99183.1| retinoid X receptor [Dicentrarchus labrax]
Length = 274
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 68/116 (58%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +LQ+ DQV LLR W+EL + + S S+ +
Sbjct: 84 VTNICQAADKQLFTLVEWAKRIPHFSELQLDDQVTLLRAGWNELLIASFSHRSIAIKDGI 143
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 144 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 196
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
PN+ + NIC+ A + LF+ VEWA+ IP F +LQ
Sbjct: 80 PND--PVTNICQAADKQLFTLVEWAKRIPHFSELQ 112
>gi|307181122|gb|EFN68856.1| MAP kinase-activated protein kinase 2 [Camponotus floridanus]
Length = 962
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ I ICE AARLLF +V WAR IP F L Q L+R W +LF+L +QC+ L +
Sbjct: 339 LSIHYICESAARLLFLSVHWARGIPAFQALPSEIQTTLVRSSWGQLFILGLAQCAYTLSL 398
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L + A + + A +V +HI Q+ V L L VDS EY+ LKA+ L
Sbjct: 399 PSILTSIINHLQASIAQEKVTAGKVKCVTEHICRLQDCVSSLHKLQVDSVEYAYLKALTL 458
Query: 115 FTTGKRIFTGVLLKALHV 132
F+ I TG K + V
Sbjct: 459 FSADN-ILTGSWRKKVEV 475
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFF 283
+ I ICE AARLLF +V WAR IP F
Sbjct: 339 LSIHYICESAARLLFLSVHWARGIPAF 365
>gi|45383862|ref|NP_989455.1| nuclear receptor subfamily 2 group C member 1 [Gallus gallus]
gi|21518633|gb|AAM60748.1|AF323691_1 testis-specific receptor 2-like protein TRR [Gallus gallus]
Length = 569
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L + ++L++ W+ELF L +QCS ++V
Sbjct: 354 LNVHYICETASRLLFLSMHWARSIPSFQALGQDNSISLVKACWNELFTLGLAQCSQVMNV 413
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LAA L + DR M+HI QE + L +D EY+ LKAIVL
Sbjct: 414 ATILAAFVNHLHDSLQQDKLPTDRGKLVMEHIFKLQEFCNSMVKLCLDGYEYAYLKAIVL 473
Query: 115 FT 116
+
Sbjct: 474 LS 475
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 44/112 (39%), Gaps = 20/112 (17%)
Query: 192 LPGGLGPGQFAALTNGDSASA--------ASAAIAAAGLNG---HSSYLSSYISLLLRAE 240
L L PG+ AA N +SA A S I +N LS
Sbjct: 287 LAKALNPGESAACQNSESAEANVQLGAEETSMNIVETSMNIVEIEGPLLSDAHVAFRLTM 346
Query: 241 PYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
P P Y + + ICE A+RLLF ++ WAR+IP F L + +
Sbjct: 347 PSPMPEY---------LNVHYICETASRLLFLSMHWARSIPSFQALGQDNSI 389
>gi|345497210|ref|XP_001599315.2| PREDICTED: nuclear receptor subfamily 2 group F member 6 [Nasonia
vitripennis]
Length = 417
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+N+ E AA+LLF AV+W R+I F L DQ LL W ELFVL A+Q + P+ + L
Sbjct: 234 ENVYEFAAKLLFLAVKWPRSISSFLQLSYRDQAILLEESWCELFVLTAAQWNFPVEESQL 293
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ A H SP DR D R +E + + L +D +EY+CLKAIVLF R
Sbjct: 294 IPA---HLSP---DRKQILSDEARRLRELLARCAILRIDHSEYACLKAIVLFKGESR 344
>gi|340710944|ref|XP_003394042.1| PREDICTED: hypothetical protein LOC100642195 [Bombus terrestris]
Length = 992
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ I ICE AARLLF +V WAR IP F L Q L+R W +LF L +QC+ L +
Sbjct: 376 LSIHYICESAARLLFLSVHWARGIPAFQALPSEVQTTLVRSSWGQLFTLGLAQCAYTLSL 435
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L + A + + A +V + +HI Q+ V L L VDS EY+ LKA+ L
Sbjct: 436 PSILTSIINHLQASIAQEKITASKVKSVTEHICRLQDCVSSLHKLQVDSVEYAYLKALTL 495
Query: 115 FTTGKRIFTGVLLKALHV 132
F+ + GV K + V
Sbjct: 496 FSADN-VLAGVWRKKVEV 512
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFF 283
+ I ICE AARLLF +V WAR IP F
Sbjct: 376 LSIHYICESAARLLFLSVHWARGIPAF 402
>gi|380799419|gb|AFE71585.1| nuclear receptor subfamily 2 group F member 6, partial [Macaca
mulatta]
Length = 144
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 44/52 (84%)
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
AAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 1 AAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 52
>gi|148237103|ref|NP_001089591.1| uncharacterized protein LOC734648 [Xenopus laevis]
gi|68533768|gb|AAH99024.1| MGC115510 protein [Xenopus laevis]
Length = 471
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 274 VTNICHAADKQLFTLVEWAKRIPHFSDLLLEDQVILLRAGWNELLIASFSHRSVSVQDGI 333
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 334 LL-ATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMEMDKSELGCLRAIVLFN 386
>gi|380014638|ref|XP_003691332.1| PREDICTED: uncharacterized protein LOC100870376 [Apis florea]
Length = 992
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ I ICE AARLLF +V WAR IP F L Q L+R W +LF L +QC+ L +
Sbjct: 376 LSIHYICESAARLLFLSVHWARGIPAFQALPSEVQTTLVRSSWGQLFTLGLAQCAYTLSL 435
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L + A + + A +V + +HI Q+ V L L VDS EY+ LKA+ L
Sbjct: 436 PSILTSIINHLQASIAQEKITASKVKSVTEHICRLQDCVSSLHKLQVDSVEYAYLKALTL 495
Query: 115 FTTGKRIFTGVLLKALHV 132
F + + GV K + V
Sbjct: 496 F-SADNVLAGVWRKKVEV 512
Score = 37.7 bits (86), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFF 283
+ I ICE AARLLF +V WAR IP F
Sbjct: 376 LSIHYICESAARLLFLSVHWARGIPAF 402
>gi|375151577|ref|NP_001243499.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|375151581|ref|NP_001243500.1| retinoic acid receptor RXR-gamma isoform c [Homo sapiens]
gi|410034069|ref|XP_003949681.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
gi|410034071|ref|XP_003949682.1| PREDICTED: retinoic acid receptor RXR-gamma [Pan troglodytes]
Length = 340
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 143 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 202
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 203 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 255
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 3/99 (3%)
Query: 189 QSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARY 247
Q CL G+ A S A A +GH + + L EP +
Sbjct: 74 QKCLVMGMKREAVQEERQRSRERAESEAECAT--SGHEDMPVERILEAELAVEPKTESYG 131
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 132 DMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 170
>gi|291397512|ref|XP_002715914.1| PREDICTED: retinoid X receptor gamma [Oryctolagus cuniculus]
gi|262263191|dbj|BAI48098.1| retinoid X receptor, gamma [Sus scrofa]
Length = 340
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 143 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 202
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 203 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 255
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 189 QSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARY 247
Q CL G+ A S A A+ +GH + + L EP +
Sbjct: 74 QKCLVMGMKREAVQEERQRSRERAESEAECAS--SGHEDMPVERILEAELAVEPKTESYG 131
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 132 DMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 170
>gi|291232327|ref|XP_002736110.1| PREDICTED: tailless-like [Saccoglossus kowalevskii]
Length = 407
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 67/110 (60%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E+AARLLF V+W +++P + L DQ+ LL W +LF+L SQ S+P+ +L+ A
Sbjct: 218 EIAARLLFITVKWVKHMPSYQILPYRDQLILLEEGWRDLFMLGLSQWSVPMDEKSILSLA 277
Query: 68 GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
L + +++ M +R Q+ V +L+ + +D+ EY+CLKAI +F +
Sbjct: 278 KLSSENTPQEKLSQIMTEVRHMQDNVRRLQKMGLDATEYACLKAISIFKS 327
>gi|383862587|ref|XP_003706765.1| PREDICTED: uncharacterized protein LOC100878424 [Megachile
rotundata]
Length = 991
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ I ICE AARLLF +V WAR IP F L Q L+R W +LF L +QC+ L +
Sbjct: 375 LSIHYICESAARLLFLSVHWARGIPAFQALPSEVQTTLVRSSWGQLFTLGLAQCAYTLSL 434
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L + A + + A +V + +HI Q+ V L L VDS EY+ LKA+ L
Sbjct: 435 PSILTSIINHLQASIAQEKITASKVKSVTEHICRLQDCVSSLHKLQVDSVEYAYLKALTL 494
Query: 115 FTTGKRIFTGVLLKALHV 132
F+ + GV K + V
Sbjct: 495 FSADN-VLAGVWRKKVEV 511
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFF 283
+ I ICE AARLLF +V WAR IP F
Sbjct: 375 LSIHYICESAARLLFLSVHWARGIPAF 401
>gi|432888946|ref|XP_004075101.1| PREDICTED: retinoic acid receptor RXR-alpha-A [Oryzias latipes]
Length = 471
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 274 VTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 333
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 334 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 386
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F DL
Sbjct: 274 VTNICQAADKQLFTLVEWAKRIPHFSDL 301
>gi|47223192|emb|CAG11327.1| unnamed protein product [Tetraodon nigroviridis]
Length = 577
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF+L +QC+ +++
Sbjct: 367 LNVHYICESASRLLFLSMHWARSIPAFSALGQEANTSLMRSCWNELFILGLAQCAHVMNL 426
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +L A + ++ ++V +H+ FQE + L DS EY+ LKAIVL
Sbjct: 427 STILTAIINHLQSSFQDDKLSGEKVKQVTEHVWKFQEFCNSMTRLETDSYEYAYLKAIVL 486
Query: 115 FT 116
F+
Sbjct: 487 FS 488
>gi|357620179|gb|EHJ72470.1| hypothetical protein KGM_05607 [Danaus plexippus]
Length = 254
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 66/120 (55%), Gaps = 8/120 (6%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GI++ E AARLLF AV+WARN+P F L DQV LL WSELF+LNA Q PL
Sbjct: 67 LGIESAAETAARLLFMAVKWARNLPSFAGLAFRDQVTLLEEGWSELFLLNAVQWCAPLDA 126
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
A H + R R + V + +++ VD AE++C+KAIVLF R
Sbjct: 127 AASALFGTEHDTGAGECR--------RRLRAVVSRYRSVLVDPAEFACMKAIVLFKPETR 178
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 243 PTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
P Y Q +GI++ E AARLLF AV+WARN+P F L R V
Sbjct: 53 PANSYPQNCISYGPLGIESAAETAARLLFMAVKWARNLPSFAGLAFRDQV 102
>gi|307210265|gb|EFN86915.1| Nuclear receptor subfamily 2 group C member 2 [Harpegnathos
saltator]
Length = 565
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 7/138 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ I ICE AARLLF +V WAR IP F L Q AL+R W +LF L +QC+ L +
Sbjct: 357 LSIHYICESAARLLFLSVHWARGIPAFQALPSEIQTALVRSSWGQLFTLGLAQCAYTLSL 416
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L++ A + + A +V + +HI Q+ V L L VDS EY+ LKA+ L
Sbjct: 417 PSILSSIINHLQASIAQEKITASKVKSLTEHICRLQDCVNSLHKLQVDSVEYAYLKALTL 476
Query: 115 FTTGKRIFTGVLLKALHV 132
F+ + GV + + V
Sbjct: 477 FSPDN-MLAGVWRRKVEV 493
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFF 283
+ I ICE AARLLF +V WAR IP F
Sbjct: 357 LSIHYICESAARLLFLSVHWARGIPAF 383
>gi|228480295|ref|NP_001153203.1| retinoic acid receptor RXR-gamma isoform 2 [Mus musculus]
gi|386369|gb|AAB27245.1| retinoid-X receptor-gamma isoform 2 [Mus sp.]
Length = 340
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 143 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 202
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 203 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 255
>gi|41282088|ref|NP_571292.2| retinoic acid receptor RXR-gamma-A [Danio rerio]
gi|52788288|sp|Q90416.2|RXRGA_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-A;
AltName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Retinoid X receptor alpha; AltName: Full=Retinoid X
receptor gamma-A
gi|37590367|gb|AAH59576.1| Retinoid x receptor, gamma a [Danio rerio]
Length = 441
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 244 VTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGI 303
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K++ + +D E CL+AIVLF
Sbjct: 304 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFN 356
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP A M + + NIC+ A + LF+ VEWA+ IP F DL
Sbjct: 222 LAVEPKTEAYMESSMSNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSDL 271
>gi|1046295|gb|AAC59720.1| retinoid X receptor alpha [Danio rerio]
gi|1583308|prf||2120366C retinoid X receptor:ISOTYPE=alpha
Length = 441
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 244 VTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGI 303
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K++ + +D E CL+AIVLF
Sbjct: 304 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFN 356
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP A M + + NIC+ A + LF+ VEWA+ IP F DL
Sbjct: 222 LAVEPKTEAYMESSMSNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSDL 271
>gi|90076842|dbj|BAE88101.1| unnamed protein product [Macaca fascicularis]
Length = 277
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 116 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 175
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 176 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 228
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 189 QSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARY 247
Q CL G+ A S A A+ +GH + + L EP +
Sbjct: 47 QKCLVMGMKREAVQEERQRSRERAESEAECAS--SGHEDMPVERILEAELAVEPKTESYG 104
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 105 DMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 143
>gi|152149581|pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149582|pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149583|pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
gi|152149584|pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 44 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 103
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 104 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 155
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 22 LAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 71
>gi|328786232|ref|XP_392769.4| PREDICTED: hypothetical protein LOC409246 [Apis mellifera]
Length = 992
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ I ICE AARLLF +V WAR IP F L Q L+R W +LF L +QC+ L +
Sbjct: 376 LSIHYICESAARLLFLSVHWARGIPAFQALPSEVQTTLVRSSWGQLFTLGLAQCAYTLSL 435
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L + A + + A +V + +HI Q+ V L L VDS EY+ LKA+ L
Sbjct: 436 PSILTSIINHLQASIAQEKITASKVKSVTEHICRLQDCVSSLHKLQVDSIEYAYLKALTL 495
Query: 115 FTTGKRIFTGVLLKALHV 132
F + + GV K + V
Sbjct: 496 F-SADNVLAGVWRKKVEV 512
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFF 283
+ I ICE AARLLF +V WAR IP F
Sbjct: 376 LSIHYICESAARLLFLSVHWARGIPAF 402
>gi|410921388|ref|XP_003974165.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like [Takifugu
rubripes]
Length = 462
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 265 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGI 324
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 325 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFN 377
>gi|355717631|gb|AES06001.1| retinoid X receptor, gamma [Mustela putorius furo]
Length = 249
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 52 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 111
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 112 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 163
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 212 AASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLL 270
A S A A+G GH + + L EP + M+ + + NIC A + L
Sbjct: 6 AESEAECASG--GHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAADKQL 63
Query: 271 FSAVEWARNIPFFPDL 286
F+ VEWA+ IP F DL
Sbjct: 64 FTLVEWAKRIPHFSDL 79
>gi|410899971|ref|XP_003963470.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 2-like [Takifugu rubripes]
Length = 629
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF+L +QC+ +++
Sbjct: 414 LNVHYICESASRLLFLSMHWARSIPAFSALGQEANTSLMRSCWNELFILGLAQCAHVMNL 473
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +L A + + ++ ++V M+H+ FQE + L DS EY+ LKAI +
Sbjct: 474 STILTAIINHLQSSIQDDKLSGEKVKQVMEHVWKFQEFCNSMTRLETDSYEYAYLKAIXV 533
Query: 115 FT 116
F+
Sbjct: 534 FS 535
>gi|66472508|ref|NP_001018458.1| nuclear receptor subfamily 2 group C member 1 [Danio rerio]
gi|63102167|gb|AAH95365.1| Nuclear receptor subfamily 2, group C, member 1 [Danio rerio]
Length = 600
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ ++ ICE A+RLLF ++ WAR+IP F L + + L++ W+ELF L +QCS ++V
Sbjct: 385 LNLNYICESASRLLFLSMHWARSIPAFQALGSENGITLMKACWNELFALGLAQCSHIMNV 444
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L A L ++ +RV M+HI QE + + D+ EY+ LKA+VL
Sbjct: 445 ETILTAIINHLQTSLDEEKLSPERVKQVMEHIWRMQEFCNSMSRMSPDAYEYAYLKAVVL 504
Query: 115 FTTGKRIFTGVL 126
F+ G L
Sbjct: 505 FSPDHSAVDGTL 516
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 255 NIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+ + ++ ICE A+RLLF ++ WAR+IP F L +G+
Sbjct: 383 DFLNLNYICESASRLLFLSMHWARSIPAFQALGSENGI 420
>gi|47224450|emb|CAG08700.1| unnamed protein product [Tetraodon nigroviridis]
Length = 597
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 7/123 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTD-QVALLRLVWSELFVLNASQCSMPLH 59
+ ++ ICE A+RLLF ++ WAR+IP F L D + L++ W+ELF L +QCS ++
Sbjct: 386 LNVNYICESASRLLFLSMHWARSIPAFQTLCGQDNDINLMKACWNELFALGMAQCSSIMN 445
Query: 60 VAPLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
V +L+A L ++A+RV M+HI QE + L D+ EY+ LKAIV
Sbjct: 446 VGTILSAIINHLQTSLQEEKLSAERVKLVMEHIWRMQEFCNSMLKLCPDAYEYAYLKAIV 505
Query: 114 LFT 116
LF+
Sbjct: 506 LFS 508
Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDL 286
+ ++ ICE A+RLLF ++ WAR+IP F L
Sbjct: 386 LNVNYICESASRLLFLSMHWARSIPAFQTL 415
>gi|194332487|ref|NP_001123685.1| retinoic acid receptor RXR-gamma [Sus scrofa]
gi|112820329|gb|ABI24018.1| retinoid X receptor gamma [Sus scrofa]
Length = 463
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K +D +E CL+A+VLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDTQMDKSELGCLRAVVLF 377
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 244 LAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>gi|390354650|ref|XP_784246.3| PREDICTED: retinoic acid receptor RXR [Strongylocentrotus
purpuratus]
Length = 479
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 283 VTNICQAADKQLFTLVEWAKRIPHFTELPLDDQVTLLRAGWNELLIAAFSHRSIQVKDGI 342
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A GLH +A RV E V K++ + +D E CL+AIVLF +
Sbjct: 343 LL-ATGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKNL 401
Query: 123 TGV 125
T V
Sbjct: 402 TSV 404
>gi|148230541|ref|NP_001087654.1| nuclear receptor subfamily 2 group C member 1-B [Xenopus laevis]
gi|82198455|sp|Q66J63.1|N2C1B_XENLA RecName: Full=Nuclear receptor subfamily 2 group C member 1-B;
AltName: Full=Developmental orphan receptor 2-B;
Short=DOR2-B; Short=xDOR2-B; AltName: Full=Orphan
nuclear receptor TR2-B; AltName: Full=Testicular
receptor 2-B
gi|51703645|gb|AAH81046.1| MGC81787 protein [Xenopus laevis]
Length = 637
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 422 LNVHYICESASRLLFLSMHWARSIPSFLSLGQENSISLVKACWNELFSLGLAQCCQVMNV 481
Query: 61 APLLAA--AGLHAS----PMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+LAA LH S +++D+V MDHI QE + VD EY+ LKAI L
Sbjct: 482 ETILAAFVNHLHNSMQHDKLSSDKVKLVMDHIFKLQEFCNSMVKRCVDGYEYAYLKAIAL 541
Query: 115 FT 116
F+
Sbjct: 542 FS 543
>gi|118777094|ref|XP_307453.3| Anopheles gambiae str. PEST AGAP012600-PA [Anopheles gambiae str.
PEST]
gi|116133146|gb|EAA03055.4| AGAP012600-PA [Anopheles gambiae str. PEST]
Length = 202
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 74/123 (60%), Gaps = 8/123 (6%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-VAP 62
+ I E +ARLLF AV+WA+N+P F L DQV LL W+ELF+LNA Q MP+ A
Sbjct: 6 ETIYETSARLLFMAVKWAKNLPSFASLTFRDQVILLEESWAELFLLNAIQWCMPIDTTAC 65
Query: 63 LLAAAGLHASPMAADRVVAFM-----DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
L + H + +A+ F D++R+ + + + K++ VD AE++C+KAIVLF +
Sbjct: 66 TLFSLNEHCN--SANNSGFFKPGQVNDNLRILNDTLCRFKSVLVDPAEFACMKAIVLFRS 123
Query: 118 GKR 120
R
Sbjct: 124 EAR 126
>gi|224066723|ref|XP_002189996.1| PREDICTED: nuclear receptor subfamily 2 group C member 2
[Taeniopygia guttata]
Length = 629
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 414 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 473
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +L A + ++ DR+ M+HI QE + + +D EY+ LKAIVL
Sbjct: 474 STILGAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKIDIDGYEYAYLKAIVL 533
Query: 115 FT 116
F+
Sbjct: 534 FS 535
>gi|348513001|ref|XP_003444031.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oreochromis niloticus]
Length = 610
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 70/123 (56%), Gaps = 7/123 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTD-QVALLRLVWSELFVLNASQCSMPLH 59
+ ++ ICE A+RLLF ++ WAR+IP F L D + L++ W+ELF L +QCS ++
Sbjct: 395 LNVNYICESASRLLFLSMHWARSIPAFQTLGGQDNDINLMKFCWNELFALGLAQCSNVMN 454
Query: 60 VAPLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
V +L+A L ++ +R M+HI QE + L DS EY+ LKAIV
Sbjct: 455 VGTILSAIINHLQTSLQEEKLSPERGKIVMEHIWRMQEFCNSMSKLSPDSYEYAYLKAIV 514
Query: 114 LFT 116
LF+
Sbjct: 515 LFS 517
>gi|47196001|emb|CAF94879.1| unnamed protein product [Tetraodon nigroviridis]
Length = 132
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/41 (95%), Positives = 40/41 (97%)
Query: 77 DRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
DRVVAFMDHIRVFQEQVEKLK LHVDSAEYSC+KAIVLFTT
Sbjct: 1 DRVVAFMDHIRVFQEQVEKLKVLHVDSAEYSCIKAIVLFTT 41
>gi|348504634|ref|XP_003439866.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 1
[Oreochromis niloticus]
Length = 453
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 256 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDG- 314
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 315 ILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFN 368
>gi|343113489|gb|AEL87703.1| retinoid X receptor alpha [Strongylocentrotus nudus]
Length = 481
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 285 VTNICQAADKQLFTLVEWAKRIPHFTELPLDDQVTLLRAGWNELLIAAFSHRSIQVKDGI 344
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A GLH +A RV E V K++ + +D E CL+AIVLF +
Sbjct: 345 LL-ATGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKNL 403
Query: 123 TGV 125
T V
Sbjct: 404 TSV 406
>gi|332019107|gb|EGI59632.1| Nuclear receptor subfamily 2 group C member 2 [Acromyrmex
echinatior]
Length = 554
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ I ICE AARLLF +V WAR IP F L Q L+R W +LF L +QC+ L +
Sbjct: 346 LSIHYICESAARLLFLSVHWARGIPAFQALPSDVQTTLVRSSWGQLFTLGLAQCAYTLSL 405
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L + A + + A +V +HI Q+ V L L VDS EY+ LKA+ L
Sbjct: 406 PSILTSIINHLQASIAQEKVTAGKVKCVTEHIWRLQDCVNSLHKLQVDSVEYAYLKALTL 465
Query: 115 FTTGKRIFTGVLLKALHV 132
F+ + G+ K + V
Sbjct: 466 FSADN-VLAGIWHKKVEV 482
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFF 283
+ I ICE AARLLF +V WAR IP F
Sbjct: 346 LSIHYICESAARLLFLSVHWARGIPAF 372
>gi|409194686|gb|AFV31633.1| retinoic X receptor gamma, partial [Acanthopagrus schlegelii]
Length = 453
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 256 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDG- 314
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 315 ILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFN 368
>gi|321463821|gb|EFX74834.1| hypothetical protein DAPPUDRAFT_323993 [Daphnia pulex]
Length = 539
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 70/128 (54%), Gaps = 12/128 (9%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
ICE A+RLLF +V WAR+I F L Q+ L+R WSELF L +QCS + + +L
Sbjct: 326 ICESASRLLFLSVHWARSIGAFQLLSSDTQIELVRGCWSELFALGMAQCSHIMSLPAILT 385
Query: 66 A------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF---- 115
A A + ++A RV +H+ Q+ V + L VD EY+ LKAI LF
Sbjct: 386 AIITHLQASVAQDKVSAQRVKLVTEHVLQLQDYVNTMSKLQVDEHEYAYLKAIALFSPDH 445
Query: 116 --TTGKRI 121
+TG+++
Sbjct: 446 AGSTGRQV 453
>gi|226316413|gb|ACO44670.1| retinoid X receptor isoform 3 [Crangon crangon]
Length = 399
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L VEWA++IP F DL V DQV LL+ W+EL + S S+ +
Sbjct: 199 VTNICQAADRHLVQLVEWAKHIPHFTDLPVQDQVVLLKAGWNELLIAAFSHRSIGVKDGI 258
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
+LA +H S V D RV E V K+K + +D E CL++IVLF R
Sbjct: 259 VLATGLVHRSSAHQAGVGTIFD--RVLSELVAKMKEMKMDKTELGCLRSIVLFNPDARGL 316
Query: 123 T 123
T
Sbjct: 317 T 317
>gi|158298860|ref|XP_319009.4| AGAP009890-PA [Anopheles gambiae str. PEST]
gi|157014089|gb|EAA14402.4| AGAP009890-PA [Anopheles gambiae str. PEST]
Length = 526
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 93/189 (49%), Gaps = 15/189 (7%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-V 60
G + I E +ARLLF AV+WA+N+P F L DQV LL W+ELF+LNA Q MP+
Sbjct: 333 GPETIYETSARLLFMAVKWAKNLPSFASLTFRDQVILLEESWAELFLLNAIQWCMPIDTT 392
Query: 61 APLLAAAGLHASPMAAD---RVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
A L + H + + +R+ + + + K++ VD AE++C+KAIVLF +
Sbjct: 393 ACTLFSLNEHCNSANNSGFFKPGQLAQDLRILNDTLCRFKSVLVDPAEFACMKAIVLFRS 452
Query: 118 GKRIFTG-VLLKALHVDSAEYSCLK---AIVLFTTGKRMFGKPLPLNQH------YTATI 167
R V ++ L D A++S + I F M +N H + TI
Sbjct: 453 EARGLKDPVQIENLQ-DQAQHSRTQFPGQIARFGRLLLMLPLLRAVNSHKIESIYFQKTI 511
Query: 168 SNVPLSSSL 176
N P+ L
Sbjct: 512 GNTPMEKVL 520
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G + I E +ARLLF AV+WA+N+P F L R V
Sbjct: 333 GPETIYETSARLLFMAVKWAKNLPSFASLTFRDQV 367
>gi|1144348|gb|AAC18408.1| TR4, partial [Mus musculus]
Length = 608
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 393 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 452
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + +D EY+ LKAIVL
Sbjct: 453 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMANWDIDGYEYAYLKAIVL 512
Query: 115 FT 116
F+
Sbjct: 513 FS 514
>gi|340025441|gb|AEK27051.1| retinoid X receptor gamma [Lateolabrax japonicus]
Length = 453
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 256 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDG- 314
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 315 ILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFN 368
>gi|1583309|prf||2120366D retinoid X receptor:ISOTYPE=gamma
Length = 391
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 194 VTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 253
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 254 LL-ATGLHVHRNSAHTAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 306
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
PN+ + NIC+ A + LF+ VEWA+ IP F DL
Sbjct: 190 PND--PVTNICQAADKQLFTLVEWAKRIPHFSDL 221
>gi|301087323|gb|ADK60866.1| retinoid X receptor [Haliotis diversicolor]
Length = 441
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 244 VTNICQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIAVKDGI 303
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A GLH +A + RV E V K++ + +D E CL+AIVLF +
Sbjct: 304 LL-ATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGL 362
Query: 123 TGV 125
+ V
Sbjct: 363 SAV 365
>gi|18859345|ref|NP_571228.1| retinoic acid receptor RXR-alpha-B [Danio rerio]
gi|52783417|sp|Q90415.1|RXRAB_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-B;
AltName: Full=Retinoid X receptor alpha-B
gi|1046289|gb|AAC59719.1| retinoid X receptor [Danio rerio]
Length = 379
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 182 VTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 241
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 242 LL-ATGLHVHRNSAHTAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 294
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
PN+ + NIC+ A + LF+ VEWA+ IP F DL
Sbjct: 178 PND--PVTNICQAADKQLFTLVEWAKRIPHFSDL 209
>gi|348504636|ref|XP_003439867.1| PREDICTED: retinoic acid receptor RXR-gamma-B-like isoform 2
[Oreochromis niloticus]
Length = 407
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 210 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGI 269
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 270 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFN 322
>gi|326930478|ref|XP_003211374.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor
RXR-alpha-like [Meleagris gallopavo]
Length = 497
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 300 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 359
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 360 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 412
>gi|345806213|ref|XP_858806.2| PREDICTED: retinoic acid receptor RXR-alpha isoform 11 [Canis lupus
familiaris]
Length = 492
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 68/116 (58%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 295 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 353
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D +E CL+AIVLF
Sbjct: 354 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKSELGCLRAIVLFN 407
>gi|410903442|ref|XP_003965202.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Takifugu
rubripes]
Length = 447
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 250 VTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSIGIKDGI 309
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 310 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 362
>gi|7766906|pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + +AS S+ +
Sbjct: 41 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASASHRSIAVKDGI 100
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 101 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 157
>gi|197941308|gb|ACH78358.1| retinoid X receptor gamma [Sebastiscus marmoratus]
Length = 451
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 254 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVFLLRAGWNELLIASFSHRSVTVKDG- 312
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 313 ILLATGLHVHRNSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFN 366
>gi|50539758|ref|NP_001002345.1| retinoic acid receptor RXR-gamma-B [Danio rerio]
gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full=Retinoic acid receptor RXR-gamma-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 3-B;
AltName: Full=Retinoid X receptor gamma-B
gi|49902731|gb|AAH75918.1| Zgc:92183 [Danio rerio]
gi|124054092|gb|ABM89230.1| retinoid X receptor gamma b [Danio rerio]
Length = 452
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 255 VTNICHAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSITVKDGI 314
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 315 LL-GTGLHVHRSSAHSAGVGSIFNRVLTELVSKMKDMQMDKTELGCLRAIVLF 366
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 237 LRAEPYPTARYSQCMQPNNIMG-IDNICELAARLLFSAVEWARNIPFFPDL 286
L EP T Y++ N+ + NIC A + LF+ VEWA+ IP F DL
Sbjct: 233 LSVEPK-TETYTESSPSNSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 282
>gi|148676425|gb|EDL08372.1| retinoid X receptor alpha [Mus musculus]
Length = 457
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 260 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 318
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 319 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 372
>gi|395844547|ref|XP_003795021.1| PREDICTED: retinoic acid receptor RXR-alpha [Otolemur garnettii]
Length = 487
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 290 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 348
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 349 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 402
>gi|301770651|ref|XP_002920751.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ailuropoda
melanoleuca]
Length = 516
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 319 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 377
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 378 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 431
>gi|432908440|ref|XP_004077862.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 443
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 15/127 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH--- 59
+ N+C+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+PL
Sbjct: 234 VSNLCQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIPLKDGG 293
Query: 60 -VAPLLAAAGLHASPMAA--DR-------VVAFMDHIRVFQEQVEKLKALHVDSAEYSCL 109
+A L G HA+ + A DR V A D RV E V K++ + +D E CL
Sbjct: 294 SLASELQRDGSHAAGVGAIFDRESVQSAEVGAIFD--RVLTELVNKMRDMQMDKTELGCL 351
Query: 110 KAIVLFT 116
+AIVLF
Sbjct: 352 RAIVLFN 358
>gi|74902124|sp|Q5I7G2.1|RXR_LYMST RecName: Full=Retinoic acid receptor RXR; AltName: Full=Retinoid X
receptor; Short=LymRXR
gi|57164664|gb|AAW34268.1| retinoid X receptor [Lymnaea stagnalis]
Length = 436
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 239 VTNICQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSI-MAKDG 297
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
+L A GLH +A + RV E V K++ + +D E CL+A+VLF +
Sbjct: 298 ILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAVVLFNPDAKGL 357
Query: 123 TGV 125
T V
Sbjct: 358 TAV 360
>gi|322794241|gb|EFZ17417.1| hypothetical protein SINV_08914 [Solenopsis invicta]
Length = 547
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ I ICE AARLLF +V WAR IP F L Q L+R W +LF L +QC+ L +
Sbjct: 339 LSIHYICESAARLLFLSVHWARGIPAFQALPSEVQTTLVRSSWGQLFTLGLAQCAYTLSL 398
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L + A + + A +V +HI Q+ V L L VDS EY+ LKA+ L
Sbjct: 399 PSILTSIINHLQASIAQEKITAGKVKCVTEHICRLQDCVSSLHKLQVDSVEYAYLKALTL 458
Query: 115 FTTGKRIFTGVLLKALHV 132
F+ + G+ K + V
Sbjct: 459 FSADN-VLAGIWRKKVEV 475
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 19/27 (70%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFF 283
+ I ICE AARLLF +V WAR IP F
Sbjct: 339 LSIHYICESAARLLFLSVHWARGIPAF 365
>gi|148230344|ref|NP_001080936.1| retinoid X receptor, beta [Xenopus laevis]
gi|840922|emb|CAA60792.1| retinoid X receptor beta [Xenopus laevis]
Length = 412
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 215 VTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGI 274
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 275 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 327
>gi|312381897|gb|EFR27526.1| hypothetical protein AND_05729 [Anopheles darlingi]
Length = 399
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-VAP 62
+ I E +ARLLF AV+WA+N+P F L DQV LL W+ELF+LNA Q MP+ A
Sbjct: 203 ETIYETSARLLFMAVKWAKNLPSFASLTFRDQVILLEESWAELFLLNAIQWCMPIDTTAC 262
Query: 63 LLAAAGLHASPMAAD---RVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
L + H + + + +R+ + + + K++ VD AE++C+KAIVLF +
Sbjct: 263 TLFSLNEHCNSVNNSGFFKPGQLAQDLRILNDTLCRFKSVMVDPAEFACMKAIVLFRSEA 322
Query: 120 R 120
R
Sbjct: 323 R 323
>gi|449269065|gb|EMC79874.1| Retinoic acid receptor RXR-alpha, partial [Columba livia]
Length = 458
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 261 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 319
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 320 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 373
>gi|148747360|ref|NP_036937.2| retinoic acid receptor RXR-alpha [Rattus norvegicus]
gi|110781215|emb|CAL25727.1| retinoid X receptor alpha [Rattus norvegicus]
gi|110781217|emb|CAL25728.1| retinoid X receptor alpha [Rattus norvegicus]
gi|112982471|emb|CAL36079.1| retinoid X receptor alpha [Rattus norvegicus]
gi|149039209|gb|EDL93429.1| retinoid X receptor alpha, isoform CRA_a [Rattus norvegicus]
Length = 467
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 328
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 329 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 382
>gi|226442013|gb|ACO57596.1| retinoid X receptor alpha, partial [Gillichthys seta]
Length = 221
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 64 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGI 123
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 124 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFN 176
>gi|358414696|ref|XP_887036.4| PREDICTED: retinoic acid receptor RXR-alpha isoform 4 [Bos taurus]
Length = 557
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 360 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 418
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 419 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 472
>gi|410979449|ref|XP_003996096.1| PREDICTED: retinoic acid receptor RXR-alpha [Felis catus]
Length = 527
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 330 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 388
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 389 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 442
>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
gi|210060994|pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
gi|210061000|pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 328
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 329 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 382
>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha [Homo sapiens]
Length = 452
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 255 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 313
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 314 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 367
>gi|355567352|gb|EHH23693.1| hypothetical protein EGK_07223, partial [Macaca mulatta]
Length = 453
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 256 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 314
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 315 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 368
>gi|194223734|ref|XP_001499769.2| PREDICTED: nuclear receptor subfamily 2 group F member 6-like
[Equus caballus]
Length = 185
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/51 (76%), Positives = 43/51 (84%)
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
AAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 43 AAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 93
>gi|171362735|dbj|BAG14374.1| retinoid X receptor gamma homolog [Lepisosteus platyrhinchus]
Length = 285
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 122 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGI 181
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 182 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFN 234
>gi|363740474|ref|XP_003642339.1| PREDICTED: retinoic acid receptor RXR-alpha [Gallus gallus]
Length = 467
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 328
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 329 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 382
>gi|226442011|gb|ACO57595.1| retinoid X receptor alpha, partial [Gillichthys mirabilis]
Length = 221
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 64 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGI 123
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 124 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFN 176
>gi|464702|sp|Q05343.1|RXRA_RAT RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|206819|gb|AAA42093.1| retinoid X receptor alpha [Rattus norvegicus]
Length = 467
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 328
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 329 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 382
>gi|6755384|ref|NP_035435.1| retinoic acid receptor RXR-alpha [Mus musculus]
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|54022|emb|CAA46962.1| retinoid X receptor-alpha [Mus musculus]
gi|200878|gb|AAA40080.1| retinoid X receptor alpha [Mus musculus]
gi|187953011|gb|AAI38803.1| Retinoid X receptor alpha [Mus musculus]
gi|187954071|gb|AAI38801.1| Retinoid X receptor alpha [Mus musculus]
Length = 467
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 328
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 329 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 382
>gi|149410285|ref|XP_001506054.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Ornithorhynchus
anatinus]
Length = 433
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 236 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 295
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 296 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 348
>gi|21310111|gb|AAM46151.1|AF378829_1 nuclear hormone receptor RXR [Branchiostoma floridae]
Length = 522
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + L + VEWA+ IP F DL + DQV LLR W+EL + S S+ +
Sbjct: 294 VTNICQAADKQLVTLVEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDG- 352
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
+L A+GLH +A + RV E V K++ + +D E CL+AIVLF +
Sbjct: 353 ILLASGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGL 412
Query: 123 T 123
T
Sbjct: 413 T 413
>gi|355752946|gb|EHH56992.1| hypothetical protein EGM_06542, partial [Macaca fascicularis]
Length = 453
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 256 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 314
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 315 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 368
>gi|296191131|ref|XP_002743523.1| PREDICTED: retinoic acid receptor RXR-alpha [Callithrix jacchus]
Length = 603
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 406 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 464
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 465 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 518
>gi|47940249|gb|AAH72132.1| Rxrb protein [Xenopus laevis]
Length = 449
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 252 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGI 311
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 312 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 364
>gi|327276463|ref|XP_003222989.1| PREDICTED: retinoic acid receptor RXR-alpha-like, partial [Anolis
carolinensis]
Length = 451
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 254 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 312
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 313 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 366
>gi|181330916|ref|NP_001116766.1| nuclear receptor subfamily 2 group C member 2 [Danio rerio]
Length = 623
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 7/123 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L AL+R W+ELF+L +QC+ + +
Sbjct: 407 LNVHYICESASRLLFLSMHWARSIPAFLALGQECNTALVRACWNELFILGLAQCAQIMSL 466
Query: 61 APLLAAAGLH-------ASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
+ +L A H ++++R+ M+HI QE + L D+ EY+ LKAIV
Sbjct: 467 STILTAIVNHLQSSIQDVDKLSSERIKLVMEHIWKLQEFCNSMAKLQTDAYEYAYLKAIV 526
Query: 114 LFT 116
LF+
Sbjct: 527 LFS 529
>gi|149039210|gb|EDL93430.1| retinoid X receptor alpha, isoform CRA_b [Rattus norvegicus]
Length = 439
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 242 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 300
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 301 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 354
>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [Cloning vector pERV3]
Length = 479
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 282 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 340
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 341 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 394
>gi|126297986|ref|XP_001372307.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Monodelphis
domestica]
Length = 489
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 292 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 350
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 351 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 404
>gi|62860048|ref|NP_001015937.1| retinoid X receptor, beta [Xenopus (Silurana) tropicalis]
gi|89268107|emb|CAJ83850.1| Retinoic acid receptor RXR-beta (Retinoid X receptor beta) [Xenopus
(Silurana) tropicalis]
Length = 449
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 252 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGI 311
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 312 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 364
>gi|354501950|ref|XP_003513051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cricetulus
griseus]
gi|344245296|gb|EGW01400.1| Retinoic acid receptor RXR-alpha [Cricetulus griseus]
Length = 439
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 242 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 300
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 301 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 354
>gi|76364252|gb|ABA41640.1| retinoic X receptor-like protein [Strongylocentrotus purpuratus]
Length = 307
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 124 VTNICQAADKQLFTLVEWAKRIPHFTELPLDDQVTLLRAGWNELLIAAFSHRSIQVKDGI 183
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A GLH +A RV E V K++ + +D E CL+AIVLF +
Sbjct: 184 LL-ATGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKNL 242
Query: 123 TGV 125
T V
Sbjct: 243 TSV 245
>gi|378925274|dbj|BAL63405.1| retinoic X receptor gamma, partial [Solea senegalensis]
Length = 217
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 60 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGI 119
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 120 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFN 172
>gi|74194825|dbj|BAE26004.1| unnamed protein product [Mus musculus]
Length = 467
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 328
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 329 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 382
>gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculus]
gi|1685273|gb|AAB36778.1| RXR alpha 3 [Mus musculus]
Length = 439
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 242 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 300
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 301 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 354
>gi|395506404|ref|XP_003757522.1| PREDICTED: retinoic acid receptor RXR-alpha [Sarcophilus harrisii]
Length = 468
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 271 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 329
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 330 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 383
>gi|189442705|gb|AAI67577.1| rxrb protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 215 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGI 274
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 275 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 327
>gi|4506755|ref|NP_002948.1| retinoic acid receptor RXR-alpha [Homo sapiens]
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
gi|35885|emb|CAA36982.1| unnamed protein product [Homo sapiens]
gi|84201602|gb|AAI10999.1| Retinoid X receptor, alpha [Homo sapiens]
gi|119608529|gb|EAW88123.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|119608530|gb|EAW88124.1| retinoid X receptor, alpha, isoform CRA_b [Homo sapiens]
gi|167773495|gb|ABZ92182.1| retinoid X receptor, alpha [synthetic construct]
gi|208965438|dbj|BAG72733.1| retinoid X receptor, alpha [synthetic construct]
gi|216409718|dbj|BAH02296.1| retinoid X receptor, alpha [Homo sapiens]
gi|325495497|gb|ADZ17354.1| retinoid X nuclear receptor alpha [Homo sapiens]
gi|380815422|gb|AFE79585.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|383420605|gb|AFH33516.1| retinoic acid receptor RXR-alpha [Macaca mulatta]
gi|226861|prf||1609194A retinoic acid receptor RXRalpha
Length = 462
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 265 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 323
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 324 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 377
>gi|1710719|sp|P51128.1|RXRA_XENLA RecName: Full=Retinoic acid receptor RXR-alpha; AltName:
Full=Nuclear receptor subfamily 2 group B member 1;
AltName: Full=Retinoid X receptor alpha
Length = 488
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 291 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 349
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 350 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 403
>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning vector pFB-ERV]
Length = 472
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 275 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 333
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 334 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 387
>gi|410222730|gb|JAA08584.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410251064|gb|JAA13499.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410306614|gb|JAA31907.1| retinoid X receptor, alpha [Pan troglodytes]
gi|410353913|gb|JAA43560.1| retinoid X receptor, alpha [Pan troglodytes]
Length = 462
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 265 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 323
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 324 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 377
>gi|71051362|gb|AAH99003.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 458
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 261 VTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGI 320
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 321 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 373
>gi|301611491|ref|XP_002935274.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Xenopus
(Silurana) tropicalis]
Length = 459
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 262 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 320
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 321 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 374
>gi|146186456|gb|ABQ09280.1| retinoid X receptor alpha 1 [Oryzias latipes]
Length = 250
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 60 VTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 119
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 120 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 172
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
PN+ + NIC+ A + LF+ VEWA+ IP F DL
Sbjct: 56 PND--PVTNICQAADKQLFTLVEWAKRIPHFSDL 87
>gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full=Retinoic acid receptor RXR-alpha-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 1-A;
AltName: Full=RXRalpha-B; AltName: Full=Retinoid X
receptor alpha-A
Length = 430
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 233 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 292
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 293 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 345
>gi|75017953|sp|Q8T5C6.1|RXR_BIOGL RecName: Full=Retinoic acid receptor RXR; AltName: Full=RXR-like
protein; AltName: Full=Retinoid X receptor; Short=BgRXR
gi|19386469|gb|AAL86461.1| RXR-like protein [Biomphalaria glabrata]
Length = 436
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 239 VTNICQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSI-MAKDG 297
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
+L A GLH +A + RV E V K++ + +D E CL+A+VLF +
Sbjct: 298 ILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGL 357
Query: 123 TGV 125
T V
Sbjct: 358 TAV 360
>gi|348505482|ref|XP_003440290.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Oreochromis
niloticus]
Length = 781
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 584 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 643
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 644 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 696
>gi|83318203|gb|AAI08461.1| Rxrb-a protein [Xenopus laevis]
Length = 458
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 261 VTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGI 320
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 321 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 373
>gi|432094623|gb|ELK26129.1| Retinoic acid receptor RXR-beta [Myotis davidii]
Length = 574
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 377 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 436
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 437 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 489
>gi|49114890|gb|AAH73179.1| Rxrb-A-prov protein, partial [Xenopus laevis]
Length = 451
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 254 VTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGI 313
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 314 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 366
>gi|195984197|gb|ACG63787.1| retinoid X receptor splice variant RXR-I [Carcinus maenas]
Length = 402
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L VEWA++IP F DL + DQV LL+ W+EL + + S SM +
Sbjct: 199 VSNICQAADRHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGI 258
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+LA +H S V A D RV E V K+K + +D E CL+AIVLF
Sbjct: 259 VLATGLVVHRSSAHQAGVGAIFD--RVLSELVAKVKEMKMDKTELGCLRAIVLF 310
>gi|405953743|gb|EKC21345.1| Retinoic acid receptor RXR-alpha [Crassostrea gigas]
Length = 446
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 248 VTNICQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSIVVKDGI 307
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A GLH +A + RV E V K++ + +D E CL+AIVLF +
Sbjct: 308 LL-ATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGV 366
Query: 123 TGV 125
+ V
Sbjct: 367 SAV 369
>gi|238859643|ref|NP_001155023.1| retinoic acid receptor RXR-alpha-A [Danio rerio]
Length = 458
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 261 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 319
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 320 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 373
>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens]
Length = 516
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 319 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 377
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 378 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 431
>gi|348541129|ref|XP_003458039.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 1 [Oreochromis
niloticus]
Length = 417
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 220 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGI 279
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 280 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIILFN 332
>gi|194225999|ref|XP_001917400.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Equus caballus]
Length = 587
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 390 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 448
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 449 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 502
>gi|148725669|emb|CAN87977.1| retinoid x receptor, alpha b [Danio rerio]
Length = 202
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 5 VTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 64
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 65 LL-ATGLHVHRNSAHTAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 117
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
PN+ + NIC+ A + LF+ VEWA+ IP F DL
Sbjct: 1 PND--PVTNICQAADKQLFTLVEWAKRIPHFSDL 32
>gi|215539467|gb|AAI69986.1| Rxrb-a protein [Xenopus laevis]
Length = 445
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 248 VTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGI 307
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 308 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 360
>gi|443691595|gb|ELT93409.1| hypothetical protein CAPTEDRAFT_164614 [Capitella teleta]
Length = 540
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ V+WA+ +P F +L + DQV LLR W+EL + S S +
Sbjct: 343 VTNICQAADKQLFTLVDWAKRVPHFTELPLEDQVILLRAGWNELLIAGFSHRSTAVKDGI 402
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A + RV E V K++ +++D E CL+AIVLF
Sbjct: 403 LL-ATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMNMDKTELGCLRAIVLF 454
>gi|297241703|gb|ADI24671.1| retinoid X receptor, partial [Notophthalmus viridescens]
Length = 267
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 120 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGI 179
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 180 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 232
>gi|417515778|gb|JAA53699.1| retinoic acid receptor RXR-alpha [Sus scrofa]
Length = 467
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ +P F +L + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 328
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 329 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 382
>gi|68342537|gb|AAC32789.3| retinoid X receptor homolog [Uca pugilator]
Length = 465
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L VEWA++IP F DL + DQV LL+ W+EL + + S SM +
Sbjct: 262 VSNICQAADRHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGI 321
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+LA +H S V A D RV E V K+K + +D E CL++IVLF
Sbjct: 322 VLATGLVIHRSSAHQAGVGAIFD--RVLSELVAKMKEMKIDKTELGCLRSIVLF 373
>gi|410926021|ref|XP_003976477.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 1
[Takifugu rubripes]
Length = 417
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 220 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGI 279
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 280 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIILFN 332
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
S C PN+ + NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 211 SGCSSPND--PVTNICQAADKQLFTLVEWAKRIPHFSEL 247
>gi|296481981|tpg|DAA24096.1| TPA: retinoid X receptor, alpha [Bos taurus]
Length = 404
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 207 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 266
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 267 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 319
>gi|348533852|ref|XP_003454418.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 3
[Oreochromis niloticus]
Length = 434
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 15/127 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+PL
Sbjct: 225 VSNICQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIPLKDGV 284
Query: 63 LLAAA----GLHASPMAA--DR-------VVAFMDHIRVFQEQVEKLKALHVDSAEYSCL 109
LLA+ H++ + A DR V A D RV E V K++ + +D E CL
Sbjct: 285 LLASELQRDSAHSAGVGAIFDRESVQSAEVGAIFD--RVLTELVNKMRDMQMDKIELGCL 342
Query: 110 KAIVLFT 116
+AIVLF
Sbjct: 343 RAIVLFN 349
>gi|218156198|dbj|BAH03331.1| retinoid X receptor [Lethenteron camtschaticum]
Length = 306
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ +P F +L + DQV LLR W+EL + + S S+ +
Sbjct: 138 VTNICQAADKQLFTLVEWAKRVPHFSELSLDDQVILLRAGWNELLIASFSHRSISVKDGI 197
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K++ + +D E CL+AIVLF
Sbjct: 198 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFN 250
>gi|359070758|ref|XP_002691733.2| PREDICTED: retinoic acid receptor RXR-alpha [Bos taurus]
Length = 756
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 559 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 617
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 618 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 671
>gi|348533850|ref|XP_003454417.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Oreochromis niloticus]
Length = 426
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 15/127 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+PL
Sbjct: 217 VSNICQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIPLKDGV 276
Query: 63 LLAAA----GLHASPMAA--DR-------VVAFMDHIRVFQEQVEKLKALHVDSAEYSCL 109
LLA+ H++ + A DR V A D RV E V K++ + +D E CL
Sbjct: 277 LLASELQRDSAHSAGVGAIFDRESVQSAEVGAIFD--RVLTELVNKMRDMQMDKIELGCL 334
Query: 110 KAIVLFT 116
+AIVLF
Sbjct: 335 RAIVLFN 341
>gi|444730607|gb|ELW70985.1| Retinoic acid receptor RXR-gamma [Tupaia chinensis]
Length = 425
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 228 VTNICHAADKQLFTLVEWAKRIPHFSGLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 287
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 288 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 339
>gi|71040960|gb|AAZ20371.1| RXRd nuclear hormone receptor [Gecarcinus lateralis]
Length = 432
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L VEWA++IP F DL + DQV LL+ W+EL + + S SM +
Sbjct: 229 VSNICQAADRHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGI 288
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H S V A D RV E V K+K + +D E CL++IVLF
Sbjct: 289 VLATGLVIHRSSAHQAGVGAIFD--RVLSELVAKMKEMKIDKTELGCLRSIVLFN 341
>gi|358251516|gb|AEU04707.1| retinoid X receptor alpha [Lateolabrax japonicus]
Length = 440
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICQAADKQLFTLVEWAKRIPHFSELLLDDQVILLRAGWNELLIASFSHRSIAIKDGI 325
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRNNAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 378
>gi|71040954|gb|AAZ20368.1| RXRa nuclear hormone receptor [Gecarcinus lateralis]
Length = 436
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L VEWA++IP F DL + DQV LL+ W+EL + + S SM +
Sbjct: 233 VSNICQAADRHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGI 292
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H S V A D RV E V K+K + +D E CL++IVLF
Sbjct: 293 VLATGLVIHRSSAHQAGVGAIFD--RVLSELVAKMKEMKIDKTELGCLRSIVLFN 345
>gi|348574546|ref|XP_003473051.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Cavia porcellus]
Length = 549
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ +P F +L + DQV LLR W+EL + + S S+ +
Sbjct: 352 VTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 410
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 411 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 464
>gi|426363508|ref|XP_004048881.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Gorilla gorilla
gorilla]
Length = 365
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 168 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 227
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 228 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 280
>gi|195984199|gb|ACG63788.1| retinoid X receptor splice variant RXR-II [Carcinus maenas]
Length = 441
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L VEWA++IP F DL + DQV LL+ W+EL + + S SM +
Sbjct: 238 VSNICQAADRHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGI 297
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+LA +H S V A D RV E V K+K + +D E CL+AIVLF
Sbjct: 298 VLATGLVVHRSSAHQAGVGAIFD--RVLSELVAKVKEMKMDKTELGCLRAIVLF 349
>gi|260828819|ref|XP_002609360.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
gi|229294716|gb|EEN65370.1| hypothetical protein BRAFLDRAFT_236165 [Branchiostoma floridae]
Length = 427
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + L + VEWA+ IP F DL + DQV LLR W+EL + S S+ +
Sbjct: 234 VTNICQAADKQLVTLVEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDG- 292
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
+L A+GLH +A + RV E V K++ + +D E CL+AIVLF +
Sbjct: 293 ILLASGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGL 352
Query: 123 T 123
T
Sbjct: 353 T 353
>gi|171362733|dbj|BAG14373.1| retinoid X receptor alpha homolog [Lepisosteus platyrhinchus]
Length = 288
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 125 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 184
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 185 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 237
>gi|403301502|ref|XP_003941427.1| PREDICTED: retinoic acid receptor RXR-alpha [Saimiri boliviensis
boliviensis]
Length = 365
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 168 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 227
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 228 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 280
>gi|197941306|gb|ACH78357.1| retinoid X receptor alpha [Sebastiscus marmoratus]
Length = 331
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 134 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAIKDGI 193
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 194 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 246
>gi|397503782|ref|XP_003822498.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Pan paniscus]
gi|402896147|ref|XP_003911168.1| PREDICTED: retinoic acid receptor RXR-alpha-like [Papio anubis]
gi|410043384|ref|XP_520345.4| PREDICTED: retinoic acid receptor RXR-alpha [Pan troglodytes]
gi|193785958|dbj|BAG54745.1| unnamed protein product [Homo sapiens]
Length = 365
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 168 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 227
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 228 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 280
>gi|68132036|gb|AAY85284.1| RXRalpha-B [Danio rerio]
Length = 365
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 168 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 227
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 228 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 280
>gi|71040956|gb|AAZ20369.1| RXRb nuclear hormone receptor [Gecarcinus lateralis]
Length = 431
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L VEWA++IP F DL + DQV LL+ W+EL + + S SM +
Sbjct: 228 VSNICQAADRHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSMGVEDGI 287
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H S V A D RV E V K+K + +D E CL++IVLF
Sbjct: 288 VLATGLVIHRSSAHQAGVGAIFD--RVLSELVAKMKEMKIDKTELGCLRSIVLFN 340
>gi|195402633|ref|XP_002059909.1| GJ14974 [Drosophila virilis]
gi|194140775|gb|EDW57246.1| GJ14974 [Drosophila virilis]
Length = 577
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 69/126 (54%), Gaps = 9/126 (7%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA-- 61
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL
Sbjct: 376 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 435
Query: 62 PLLAAA----GLHASPMAADRVVAFMD---HIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L + A L + D V+ + +R E K KA+ VD AE++CLKAIVL
Sbjct: 436 ALFSVAEHCNNLENNASNGDNCVSKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVL 495
Query: 115 FTTGKR 120
F R
Sbjct: 496 FRPETR 501
>gi|307196423|gb|EFN78012.1| Photoreceptor-specific nuclear receptor [Harpegnathos saltator]
Length = 394
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 64/117 (54%), Gaps = 6/117 (5%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+NI E AA+LLF AV WAR+I F L DQ LL WSELFVL A+Q + + L
Sbjct: 211 ENIYEFAAKLLFFAVRWARSIHSFLQLPYRDQTILLEESWSELFVLTAAQWNFSVDETSL 270
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ + +R +D R +E + K AL VD +EY+CLKAIVLF R
Sbjct: 271 VPVD------LPPERREILVDKARRLRELLAKCVALRVDHSEYACLKAIVLFKAESR 321
>gi|157831763|pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 85 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 144
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 145 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 197
>gi|400270857|gb|AFP75252.1| retinoid X receptor, partial [Tupaia belangeri]
Length = 431
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ +P F +L + DQV LLR W+EL + + S S+ +
Sbjct: 234 VTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 292
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 293 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 346
>gi|83638436|gb|ABC33911.1| retinoid X receptor alpha transcript variant 1 [Sus scrofa]
Length = 374
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ +P F +L + DQV LLR W+EL + + S S+ +
Sbjct: 177 VTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 236
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 237 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 289
>gi|441623802|ref|XP_003279685.2| PREDICTED: retinoic acid receptor RXR-alpha [Nomascus leucogenys]
Length = 418
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 221 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 280
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 281 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 333
>gi|84579197|dbj|BAE73032.1| hypothetical protein [Macaca fascicularis]
Length = 462
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 265 VTNICQAADKQLFMLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 323
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 324 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 377
>gi|325930183|gb|ADZ45550.1| retinoid X receptor alpha [Taeniopygia guttata]
Length = 467
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 328
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 329 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMLMDKTELGCLRAIVLFN 382
>gi|16797878|gb|AAL29197.1|AF323684_1 nuclear receptor AmNR4 isoform B [Acropora millepora]
Length = 408
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 12/129 (9%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ ++ + E+A RLLF V+WA++I F L+ +DQ+ LL+ WS+LF+L +QCS +
Sbjct: 197 LSMEYVYEIATRLLFLTVDWAQSIQAFRCLENSDQLVLLQSTWSDLFMLGVAQCSSSFPL 256
Query: 61 APLLAAAGLHAS------------PMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSC 108
+PLL+ A H P + + +D I +E + L+ L +DS EY+
Sbjct: 257 SPLLSLAAFHMEHRDSESNAQNRQPSSVNSDPNLIDKIVTVKELLFSLEKLELDSVEYAF 316
Query: 109 LKAIVLFTT 117
LKAIVLF +
Sbjct: 317 LKAIVLFNS 325
>gi|31376304|dbj|BAC77243.1| retinoid X receptor [Oreochromis niloticus]
Length = 267
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 74 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGI 133
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 134 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIILFN 186
>gi|195119854|ref|XP_002004444.1| GI19610 [Drosophila mojavensis]
gi|193909512|gb|EDW08379.1| GI19610 [Drosophila mojavensis]
Length = 589
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 69/125 (55%), Gaps = 8/125 (6%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-VAP 62
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL
Sbjct: 394 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 453
Query: 63 LLAAAGLHASPMA----ADRVVAFMD---HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L + H + + D V+ + +R E K KA+ VD AE++CLKAIVLF
Sbjct: 454 ALFSVAEHCNNLENNANTDNCVSKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 513
Query: 116 TTGKR 120
R
Sbjct: 514 RPETR 518
>gi|449478039|ref|XP_002196179.2| PREDICTED: retinoic acid receptor RXR-alpha [Taeniopygia guttata]
Length = 439
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 242 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 301
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 302 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMLMDKTELGCLRAIVLFN 354
>gi|147223295|emb|CAN13297.1| retinoid X receptor, beta [Sus scrofa]
Length = 388
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 239 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 298
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 299 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 351
>gi|334323757|ref|XP_001377435.2| PREDICTED: retinoic acid receptor RXR-beta-like [Monodelphis
domestica]
Length = 597
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 400 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSISVRDGI 459
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 460 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 512
>gi|1710720|sp|P49743.1|RXRB_RAT RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor coregulator 1; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
Length = 458
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 261 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 320
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 321 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 373
>gi|66347234|emb|CAI95622.1| retinoid X receptor, beta [Homo sapiens]
Length = 482
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 285 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 344
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 345 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 397
>gi|224983542|pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
gi|284055748|pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 47 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 106
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 107 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 163
>gi|16797876|gb|AAL29196.1|AF323683_1 nuclear receptor AmNR4 isoform A [Acropora millepora]
Length = 416
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 12/129 (9%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ ++ + E+A RLLF V+WA++I F L+ +DQ+ LL+ WS+LF+L +QCS +
Sbjct: 205 LSMEYVYEIATRLLFLTVDWAQSIQAFRCLENSDQLVLLQSTWSDLFMLGVAQCSSSFPL 264
Query: 61 APLLAAAGLHAS------------PMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSC 108
+PLL+ A H P + + +D I +E + L+ L +DS EY+
Sbjct: 265 SPLLSLAAFHMEHRDSESNAQNRQPSSVNSDPNLIDKIVTVKELLFSLEKLELDSVEYAF 324
Query: 109 LKAIVLFTT 117
LKAIVLF +
Sbjct: 325 LKAIVLFNS 333
>gi|444518523|gb|ELV12209.1| Retinoic acid receptor RXR-alpha [Tupaia chinensis]
Length = 386
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ +P F +L + DQV LLR W+EL + + S S+ +
Sbjct: 189 VTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 248
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 249 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 301
>gi|380800431|gb|AFE72091.1| retinoic acid receptor RXR-beta, partial [Macaca mulatta]
Length = 478
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 281 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 340
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 341 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 393
>gi|126339675|ref|XP_001370429.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Monodelphis domestica]
Length = 605
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QCS ++V
Sbjct: 390 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCSQVMNV 449
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LAA + L ++ +R A M+HI QE + L +D EY+ LKAIVL
Sbjct: 450 ATILAAFVNRLHSSLQQDKLSTERGKAIMEHIFKLQEFCNSMVRLCLDGYEYAYLKAIVL 509
Query: 115 FT 116
F+
Sbjct: 510 FS 511
>gi|384482349|pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 45 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 104
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 105 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 157
>gi|355845815|gb|AET06182.1| retinoid-X receptor [Callinectes sapidus]
Length = 399
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L VEWA++IP F DL + DQV LL+ W+EL + + S S+ +
Sbjct: 196 VSNICQAADRHLVQLVEWAKHIPHFTDLPIEDQVVLLKAGWNELLIASFSHRSIGVEDGI 255
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H S V A D RV E V K+K + +D E CL+AIVLF
Sbjct: 256 VLATGLVVHRSSAHQAGVGAIFD--RVLSELVSKMKEMKMDKTELGCLRAIVLFN 308
>gi|354487523|ref|XP_003505922.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cricetulus
griseus]
Length = 546
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 349 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 408
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 409 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 461
>gi|348576404|ref|XP_003473977.1| PREDICTED: retinoic acid receptor RXR-beta-like [Cavia porcellus]
Length = 531
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 334 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 393
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 394 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 446
>gi|84028533|gb|ABC49725.1| retinoid X receptor 2 [Petromyzon marinus]
Length = 512
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEW++ +P F +L + DQV LLR W+EL + + S S+ +
Sbjct: 280 VTNICQAADKQLFTLVEWSKRVPHFSELPLDDQVILLRAGWNELHIASFSHRSIGVSDG- 338
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A RV E V K++ +++D AE CL+AIVLF
Sbjct: 339 ILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMNMDKAELGCLRAIVLFN 392
>gi|395533940|ref|XP_003769007.1| PREDICTED: LOW QUALITY PROTEIN: retinoic acid receptor RXR-beta
[Sarcophilus harrisii]
Length = 524
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 327 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSISVRDGI 386
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 387 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 439
>gi|56965939|pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
gi|223365895|pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|223365897|pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
gi|226887770|pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
gi|226887772|pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 45 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 104
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 105 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 161
>gi|16118883|gb|AAL14642.1| retinoid X receptor beta [Neovison vison]
Length = 525
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 328 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 387
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 388 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 440
>gi|24987814|pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
gi|24987816|pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
gi|24987862|pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987864|pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987866|pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|24987868|pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
gi|158429278|pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|158429280|pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
gi|158429282|pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
gi|237640540|pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
gi|255917832|pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917834|pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|255917836|pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
gi|312207941|pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207942|pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
gi|312207943|pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|312207944|pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
gi|333944482|pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944483|pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
gi|333944486|pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944487|pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944488|pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|333944489|pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
gi|374977596|pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
gi|374977598|pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 43 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 102
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 103 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 159
>gi|206603|gb|AAA42025.1| nuclear receptor co-regulator 1 [Rattus sp.]
Length = 451
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 254 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 313
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 314 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 366
>gi|395832129|ref|XP_003789128.1| PREDICTED: retinoic acid receptor RXR-beta [Otolemur garnettii]
Length = 532
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 335 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 394
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 395 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 447
>gi|20302776|gb|AAM18897.1|AF391295_6 unknown [Branchiostoma floridae]
Length = 232
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + L + VEWA+ IP F DL + DQV LLR W+EL + S S+ +
Sbjct: 4 VTNICQAADKQLVTLVEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDGI 63
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A+GLH +A + RV E V K++ + +D E CL+AIVLF +
Sbjct: 64 LL-ASGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGL 122
Query: 123 T 123
T
Sbjct: 123 T 123
>gi|112820331|gb|ABI24019.1| retinoid X receptor beta [Sus scrofa]
Length = 484
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 335 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 394
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 395 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 447
>gi|291223399|ref|XP_002731697.1| PREDICTED: retinoid X receptor-like protein [Saccoglossus
kowalevskii]
Length = 497
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 301 VTNICQAADKQLFTLVEWAKRIPHFTELPLDDQVILLRAGWNELLIAAFSHRSIAVKDGI 360
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K++ + +D E CL+AIVLF
Sbjct: 361 LL-ATGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLF 412
>gi|308198436|pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 43 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 102
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 103 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 159
>gi|46237552|emb|CAE83933.1| retinoid X receptor beta [Rattus norvegicus]
Length = 451
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 254 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 313
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 314 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 366
>gi|56967064|pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
gi|56967068|pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 41 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 100
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 101 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 157
>gi|395741153|ref|XP_002820405.2| PREDICTED: retinoic acid receptor RXR-alpha-like [Pongo abelii]
Length = 318
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 121 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSNRSIAVKDGI 180
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 181 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 233
>gi|344298826|ref|XP_003421092.1| PREDICTED: retinoic acid receptor RXR-beta-like [Loxodonta
africana]
Length = 532
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 335 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 394
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 395 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 447
>gi|357627327|gb|EHJ77063.1| putative Orphan nuclear receptor NR2E1 [Danaus plexippus]
Length = 390
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 13/138 (9%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
ICE AARLLF V+WA+N+P F L + D++ LL W +LFV+ ++Q PL + L+
Sbjct: 190 ICEAAARLLFMNVKWAKNVPAFSSLSLQDRLILLEESWRDLFVIGSAQFLYPLDLKVLVN 249
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGV 125
HI F++ + +L +H D+ EY+CL+AIVLF T F V
Sbjct: 250 TKHTKVDS----------KHIADFEKALIELTKMHPDNNEYACLRAIVLFKTN---FNAV 296
Query: 126 LLKALHVDSAEYSCLKAI 143
+L E LK +
Sbjct: 297 HTNSLPQSHIEIKKLKDL 314
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDL 286
ICE AARLLF V+WA+N+P F L
Sbjct: 190 ICEAAARLLFMNVKWAKNVPAFSSL 214
>gi|189237797|ref|XP_973111.2| PREDICTED: similar to PNR-like [Tribolium castaneum]
Length = 426
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 5/117 (4%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+N+ E AA+LLF A++WA++IP F L DQ LL WSELFVL A+Q + P+ L
Sbjct: 239 ENVYESAAKLLFLAIKWAKSIPSFLQLSYRDQSILLEESWSELFVLTAAQWAFPVDETLL 298
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
++ A +P + R A + R +E + +L L VD E++CLKA+VLF + R
Sbjct: 299 VSNA---IAPTS--RHAALEEDARRLREIITRLTLLRVDHTEHACLKALVLFKSECR 350
>gi|148678299|gb|EDL10246.1| retinoid X receptor beta, isoform CRA_a [Mus musculus]
Length = 451
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 254 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 313
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 314 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 366
>gi|444729063|gb|ELW69492.1| Retinoic acid receptor RXR-beta [Tupaia chinensis]
Length = 408
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 211 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 270
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 271 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 323
>gi|426352703|ref|XP_004043849.1| PREDICTED: retinoic acid receptor RXR-beta [Gorilla gorilla
gorilla]
Length = 533
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 336 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 395
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 396 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 448
>gi|9955002|pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
gi|9955003|pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 42 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 101
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 102 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 158
>gi|71681086|gb|AAH99776.1| Rxrb protein, partial [Rattus norvegicus]
Length = 485
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 288 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 347
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 348 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 400
>gi|61679483|pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679485|pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
gi|61679491|pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
gi|61679493|pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 39 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 98
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 99 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 155
>gi|13399885|pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399887|pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
gi|13399893|pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
gi|14278179|pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278180|pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278181|pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278182|pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
gi|14278313|pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278314|pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278315|pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|14278316|pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
gi|17943020|pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
gi|78101296|pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101298|pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101300|pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|78101302|pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
gi|321159910|pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
gi|321159912|pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 41 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 100
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 101 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 157
>gi|27819113|gb|AAO22211.1| retinoid X receptor alpha [Carassius auratus]
Length = 297
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 100 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 159
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 160 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 212
>gi|195027479|ref|XP_001986610.1| GH20427 [Drosophila grimshawi]
gi|193902610|gb|EDW01477.1| GH20427 [Drosophila grimshawi]
Length = 281
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-VAP 62
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL
Sbjct: 86 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLEPTGC 145
Query: 63 LLAAAGLHASPMA----ADRVVAFMD---HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L + H + + D V + +R E K KA+ VD AE++CLKAIVLF
Sbjct: 146 ALFSVAEHCNNLENNANGDNCVTKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 205
Query: 116 TTGKR 120
R
Sbjct: 206 RPETR 210
>gi|146186460|gb|ABQ09282.1| retinoid X receptor beta 1 [Oryzias latipes]
Length = 194
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 7 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGI 66
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 67 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIILFN 119
>gi|337720|gb|AAA60293.1| retinoid X receptor beta [Homo sapiens]
Length = 533
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 336 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 395
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 396 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 448
>gi|296197857|ref|XP_002746468.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Callithrix
jacchus]
Length = 532
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 335 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 394
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 395 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 447
>gi|298228982|ref|NP_001177175.1| retinoic acid receptor RXR-beta [Sus scrofa]
gi|147223294|emb|CAN13296.1| retinoid X receptor, beta [Sus scrofa]
Length = 532
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 335 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 394
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 395 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 447
>gi|332246155|ref|XP_003272215.1| PREDICTED: retinoic acid receptor RXR-beta [Nomascus leucogenys]
Length = 533
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 336 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 395
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 396 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 448
>gi|297661275|ref|XP_002809190.1| PREDICTED: retinoic acid receptor RXR-beta isoform 1 [Pongo abelii]
Length = 532
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 335 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 394
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 395 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 447
>gi|297290572|ref|XP_001108780.2| PREDICTED: retinoic acid receptor RXR-beta-like [Macaca mulatta]
Length = 534
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 337 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 396
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 397 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 449
>gi|11415052|ref|NP_068811.1| retinoic acid receptor RXR-beta isoform 2 [Homo sapiens]
gi|114606827|ref|XP_001168893.1| PREDICTED: retinoic acid receptor RXR-beta isoform 4 [Pan
troglodytes]
gi|397474336|ref|XP_003808638.1| PREDICTED: retinoic acid receptor RXR-beta [Pan paniscus]
gi|402866633|ref|XP_003897483.1| PREDICTED: retinoic acid receptor RXR-beta [Papio anubis]
gi|1350911|sp|P28702.2|RXRB_HUMAN RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|30448|emb|CAA45087.1| retinoic acid X receptor b [Homo sapiens]
gi|3172498|gb|AAC18599.1| retinoic X receptor B [Homo sapiens]
gi|3820986|emb|CAA20239.1| retinoid X receptor, beta [Homo sapiens]
gi|4249766|gb|AAD13794.1| retinoic X receptor beta [Homo sapiens]
gi|12654659|gb|AAH01167.1| Retinoid X receptor, beta [Homo sapiens]
gi|30583399|gb|AAP35944.1| retinoid X receptor, beta [Homo sapiens]
gi|60655367|gb|AAX32247.1| retinoid X receptor beta [synthetic construct]
gi|119624084|gb|EAX03679.1| retinoid X receptor, beta [Homo sapiens]
gi|325495499|gb|ADZ17355.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222100|gb|JAA08269.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263016|gb|JAA19474.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295524|gb|JAA26362.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330369|gb|JAA34131.1| retinoid X receptor, beta [Pan troglodytes]
Length = 533
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 336 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 395
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 396 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 448
>gi|431916881|gb|ELK16641.1| Retinoic acid receptor RXR-beta [Pteropus alecto]
Length = 531
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 334 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 393
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 394 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 446
>gi|73972484|ref|XP_538856.2| PREDICTED: retinoid X receptor, beta isoform 1 [Canis lupus
familiaris]
Length = 532
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 335 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 394
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 395 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 447
>gi|62900941|sp|Q5TJF7.1|RXRB_CANFA RecName: Full=Retinoic acid receptor RXR-beta; AltName:
Full=Nuclear receptor subfamily 2 group B member 2;
AltName: Full=Retinoid X receptor beta
gi|55956944|emb|CAI11431.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 533
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 336 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 395
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 396 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 448
>gi|327315360|ref|NP_001192145.1| retinoic acid receptor RXR-beta isoform 4 [Mus musculus]
gi|54024|emb|CAA46963.1| retinoid X receptor-beta [Mus musculus]
gi|987670|dbj|BAA04859.1| RXR-beta2 isoform [Mus musculus]
Length = 410
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 213 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 272
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 273 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 325
>gi|221330285|ref|NP_611032.2| hormone receptor 51 [Drosophila melanogaster]
gi|220902230|gb|AAM68536.2| hormone receptor 51 [Drosophila melanogaster]
gi|291490761|gb|ADE06696.1| RT06950p1 [Drosophila melanogaster]
Length = 582
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-VAP 62
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL
Sbjct: 382 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 441
Query: 63 LLAAAGLHASPMA----ADRVVAFMD---HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L + H + + D + + +R E K KA+ VD AE++CLKAIVLF
Sbjct: 442 ALFSVAEHCNNLENNANGDTCITKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 501
Query: 116 TTGKR 120
R
Sbjct: 502 RPETR 506
>gi|195583620|ref|XP_002081615.1| GD11109 [Drosophila simulans]
gi|194193624|gb|EDX07200.1| GD11109 [Drosophila simulans]
Length = 414
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-VAP 62
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL
Sbjct: 219 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 278
Query: 63 LLAAAGLHASPMA----ADRVVAFMD---HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L + H + + D + + +R E K KA+ VD AE++CLKAIVLF
Sbjct: 279 ALFSVAEHCNNLENNANGDTCITKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 338
Query: 116 TTGKR 120
R
Sbjct: 339 RPETR 343
>gi|16580815|dbj|BAB71758.1| retinoid X receptor alpha [Paralichthys olivaceus]
Length = 292
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 108 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSVTVKDGI 167
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 168 LL-VTGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGCLRAIVLFN 220
>gi|403261960|ref|XP_003923366.1| PREDICTED: retinoic acid receptor RXR-beta [Saimiri boliviensis
boliviensis]
Length = 505
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 308 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 367
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 368 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 420
>gi|417410882|gb|JAA51906.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 459
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 258 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 317
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 318 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 374
>gi|432861275|ref|XP_004069587.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Oryzias latipes]
Length = 610
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 69/123 (56%), Gaps = 7/123 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTD-QVALLRLVWSELFVLNASQCSMPLH 59
+ ++ ICE A+RLLF ++ WAR+IP F L D + L++ W+ELF L +QCS ++
Sbjct: 395 LNVNYICESASRLLFLSMHWARSIPAFQTLAGQDNDINLIKACWNELFALGLAQCSNVMN 454
Query: 60 VAPLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
V +L A L ++ +R M+HI QE + L D+ EY+ LKAIV
Sbjct: 455 VGTILGAIINHLQTSLQEEKLSPERGKLVMEHIWRMQEFCNSMTKLAPDAYEYAYLKAIV 514
Query: 114 LFT 116
LF+
Sbjct: 515 LFS 517
>gi|194882843|ref|XP_001975519.1| GG20513 [Drosophila erecta]
gi|190658706|gb|EDV55919.1| GG20513 [Drosophila erecta]
Length = 630
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-VAP 62
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL
Sbjct: 430 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 489
Query: 63 LLAAAGLHASPMA----ADRVVAFMD---HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L + H + + D + + +R E K KA+ VD AE++CLKAIVLF
Sbjct: 490 ALFSVAEHCNNLENNANGDTCITREELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 549
Query: 116 TTGKR 120
R
Sbjct: 550 RPETR 554
>gi|283464101|gb|ADB22634.1| retinoid X receptor-like protein [Saccoglossus kowalevskii]
Length = 531
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 335 VTNICQAADKQLFTLVEWAKRIPHFTELPLDDQVILLRAGWNELLIAAFSHRSIAVKDGI 394
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A GLH +A RV E V K++ + +D E CL+AIVLF +
Sbjct: 395 LL-ATGLHVHRNSAHSAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKNL 453
Query: 123 TGVLLKALHVDSAEYSCLK 141
G + K + Y+ L+
Sbjct: 454 -GTVQKVEELREKVYASLE 471
>gi|154183751|gb|ABS70716.1| retinoid X receptor b isoform [Nucella lapillus]
Length = 446
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S +
Sbjct: 247 VTNICQAADKQLFTLVEWAKRIPHFIELPLEDQVILLRAGWNELLIAGFSHRSTQV-TDG 305
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A + RV E V K++ + +D E CL+AIVLF
Sbjct: 306 ILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFN 359
>gi|410958898|ref|XP_003986050.1| PREDICTED: retinoic acid receptor RXR-beta [Felis catus]
Length = 532
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 335 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 394
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 395 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 447
>gi|355561583|gb|EHH18215.1| hypothetical protein EGK_14773 [Macaca mulatta]
Length = 477
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 280 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 339
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 340 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 392
>gi|58177375|pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177376|pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177377|pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
gi|58177378|pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 39 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 98
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 99 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 155
>gi|291396013|ref|XP_002714529.1| PREDICTED: Retinoic acid receptor RXR-beta-like [Oryctolagus
cuniculus]
Length = 537
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 340 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 399
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 400 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 452
>gi|139948543|ref|NP_001077109.1| retinoic acid receptor RXR-beta [Bos taurus]
gi|63169170|gb|AAY34706.1| retinoid X receptor beta [Bos taurus]
Length = 532
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 335 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 394
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 395 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 447
>gi|239782043|pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 38 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 97
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 98 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 154
>gi|301757105|ref|XP_002914382.1| PREDICTED: retinoic acid receptor RXR-beta-like [Ailuropoda
melanoleuca]
Length = 532
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 335 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 394
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 395 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 447
>gi|77404367|ref|NP_996731.2| retinoic acid receptor RXR-beta [Rattus norvegicus]
gi|149043372|gb|EDL96823.1| rCG60716 [Rattus norvegicus]
Length = 518
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 321 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 380
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 381 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 433
>gi|426250132|ref|XP_004018792.1| PREDICTED: retinoic acid receptor RXR-beta [Ovis aries]
Length = 536
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 339 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 398
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 399 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 451
>gi|13489062|ref|NP_035436.1| retinoic acid receptor RXR-beta isoform 2 [Mus musculus]
gi|1350912|sp|P28704.2|RXRB_MOUSE RecName: Full=Retinoic acid receptor RXR-beta; AltName: Full=MHC
class I regulatory element-binding protein H-2RIIBP;
AltName: Full=Nuclear receptor subfamily 2 group B
member 2; AltName: Full=Retinoid X receptor beta
gi|987669|dbj|BAA04858.1| RXR-beta1 isoform [Mus musculus]
gi|3811388|gb|AAC69904.1| RXRbeta [Mus musculus]
gi|29437348|gb|AAH49773.1| Retinoid X receptor beta [Mus musculus]
gi|148678301|gb|EDL10248.1| retinoid X receptor beta, isoform CRA_c [Mus musculus]
Length = 520
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 323 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 382
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 383 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 435
>gi|387184|gb|AAA37772.1| MHC class I regulatory element binding protein (H-2RIIBP), partial
[Mus musculus]
Length = 446
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 249 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 308
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 309 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 361
>gi|148877301|gb|AAI46261.1| Retinoid X receptor, beta [Bos taurus]
gi|296474560|tpg|DAA16675.1| TPA: retinoid X receptor, beta [Bos taurus]
Length = 532
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 335 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 394
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 395 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 447
>gi|357380532|pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 37 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 96
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 97 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 153
>gi|355748459|gb|EHH52942.1| hypothetical protein EGM_13484, partial [Macaca fascicularis]
Length = 475
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 274 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 333
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 334 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 390
>gi|242020457|ref|XP_002430670.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212515850|gb|EEB17932.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 344
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+N+ E AA+LLF V+WAR+IP F L DQ LL W+ELF+L+A+Q ++P+ L
Sbjct: 168 ENVYESAAKLLFLTVKWARSIPSFLQLTFHDQSILLENTWNELFILSAAQWTLPVDEEYL 227
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+ L + A ++ F ++ F++ + K L+VD EY+CLKA+ LF
Sbjct: 228 VRVTSL-PNNKAKEK---FEREVKNFKKIITKFNNLNVDYTEYACLKALTLF 275
>gi|154183749|gb|ABS70715.1| retinoid X receptor a isoform [Nucella lapillus]
Length = 441
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S +
Sbjct: 242 VTNICQAADKQLFTLVEWAKRIPHFIELPLEDQVILLRAGWNELLIAGFSHRSTQV-TDG 300
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A + RV E V K++ + +D E CL+AIVLF
Sbjct: 301 ILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFN 354
>gi|365176244|gb|AEW68002.1| retinoid X receptor [Halocynthia roretzi]
Length = 453
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NI + A R LF+ VEWA+ IP FP L + DQ+ LLR W+EL + + S S+ + +
Sbjct: 226 VSNIFKAADRQLFTLVEWAKRIPHFPKLVLDDQIILLRAGWNELLIASFSHRSIDVKDSI 285
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A+GLH +A + RV E V K++ + +D E CL+AIVLF
Sbjct: 286 LL-ASGLHVHRHSAHQAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAIVLFN 338
>gi|390357069|ref|XP_003728922.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Strongylocentrotus purpuratus]
Length = 585
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 80/158 (50%), Gaps = 12/158 (7%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
D + E AARLLF V+WAR +P F L +DQ LL W ELFVL A Q S+ L
Sbjct: 420 DLLYEGAARLLFMTVKWARGMPAFLTLPFSDQAILLEESWGELFVLGACQWSLSAECGQL 479
Query: 64 LAAAGLHASPMAADRVVAFMDH-IRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
++A L++ + D+ + H +R+ Q+ V +++ L D E++CLKA+ LF R
Sbjct: 480 VSAETLNS--LKKDQSDTSIQHDVRILQDIVCRVRELQADPMEFACLKALTLFRPDSRGL 537
Query: 123 TGVLLKALHVDS-----AEYSCLKAIVLFTTGKRMFGK 155
V+ D AEY+ + T + FGK
Sbjct: 538 REVMTVERLQDETQLTLAEYN----HAHYLTQRARFGK 571
>gi|312208011|pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 38 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 97
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 98 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 154
>gi|126513141|gb|ABO15684.1| retinoid X receptor alpha, partial [Latris lineata]
Length = 274
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 84 VTNICQAADKQLFTLVEWAERIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAIKDGI 143
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 144 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 196
>gi|55956943|emb|CAI11430.1| retinoid X receptor beta [Canis lupus familiaris]
Length = 458
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 257 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 316
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 317 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 373
>gi|432883656|ref|XP_004074314.1| PREDICTED: retinoic acid receptor RXR-beta-A [Oryzias latipes]
Length = 465
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 69/128 (53%), Gaps = 15/128 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 254 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGI 313
Query: 63 LLAAAGLHASPMAA---------DRVVAFMDHI-----RVFQEQVEKLKALHVDSAEYSC 108
LL A GLH +A DR +A + RV E V K++ + +D E C
Sbjct: 314 LL-ATGLHVHRNSAHSAGVGAIFDRELAHNAEVGAIFERVLTELVSKMRDMQMDKTELGC 372
Query: 109 LKAIVLFT 116
L+AI+LF
Sbjct: 373 LRAIILFN 380
>gi|7709422|gb|AAA40081.2| retinoid X receptor beta [Mus musculus]
Length = 448
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 251 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 310
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI++F
Sbjct: 311 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIIMFN 363
>gi|78100924|pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
gi|78100925|pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 33 VTNICQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSI-MAKDG 91
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
+L A GLH +A + RV E V K++ + +D E CL+A+VLF +
Sbjct: 92 ILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGL 151
Query: 123 TGV 125
T V
Sbjct: 152 TAV 154
>gi|351703545|gb|EHB06464.1| Retinoic acid receptor RXR-beta [Heterocephalus glaber]
Length = 520
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 319 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 378
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 379 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 435
>gi|4337458|gb|AAD18132.1| retinoid X receptor beta [Sus scrofa domesticus]
Length = 187
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 10 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 69
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 70 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 122
>gi|148678300|gb|EDL10247.1| retinoid X receptor beta, isoform CRA_b [Mus musculus]
Length = 455
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 254 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 313
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 314 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 370
>gi|419590185|dbj|BAM66778.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 539
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L + VEWA+ IP F L + DQV LLR W+EL + + S S+ + +
Sbjct: 315 VSNICKAADRQLVTLVEWAKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSIDVKDSI 374
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A+GLH +A + RV E V K++ + +D E CL+AIVLF
Sbjct: 375 LL-ASGLHVHRHSAHQAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAIVLFN 427
>gi|355717622|gb|AES05998.1| retinoid X receptor, alpha [Mustela putorius furo]
Length = 202
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ +P F +L + DQV LLR W+EL + + S S+ +
Sbjct: 5 VTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSITVKDGI 64
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 65 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 117
>gi|393715097|ref|NP_001257330.1| retinoic acid receptor RXR-beta isoform 1 [Homo sapiens]
gi|168277536|dbj|BAG10746.1| retinoic acid receptor RXR-beta [synthetic construct]
gi|325495561|gb|ADZ17386.1| retinoid X nuclear receptor beta [Homo sapiens]
gi|410222102|gb|JAA08270.1| retinoid X receptor, beta [Pan troglodytes]
gi|410263018|gb|JAA19475.1| retinoid X receptor, beta [Pan troglodytes]
gi|410295526|gb|JAA26363.1| retinoid X receptor, beta [Pan troglodytes]
gi|410330371|gb|JAA34132.1| retinoid X receptor, beta [Pan troglodytes]
Length = 537
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 336 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 395
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 396 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 452
>gi|281338473|gb|EFB14057.1| hypothetical protein PANDA_002281 [Ailuropoda melanoleuca]
Length = 536
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 335 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 394
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 395 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 451
>gi|94733756|emb|CAK11469.1| retinoid x receptor, beta [Danio rerio]
Length = 487
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 15/128 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 276 VTNICQAADKQLFTLVEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGI 335
Query: 63 LLAAAGLHASPMAA---------DRVVAFMDHI-----RVFQEQVEKLKALHVDSAEYSC 108
LL A GLH +A DR A + RV E V K++ + +D E C
Sbjct: 336 LL-ATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGC 394
Query: 109 LKAIVLFT 116
L+AI+LF
Sbjct: 395 LRAIILFN 402
>gi|327315356|ref|NP_001192143.1| retinoic acid receptor RXR-beta isoform 1 [Mus musculus]
gi|74198206|dbj|BAE35275.1| unnamed protein product [Mus musculus]
Length = 524
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 323 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 382
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 383 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 439
>gi|390432211|gb|AFL91697.1| retinoid X receptor isoform b [Azumapecten farreri]
Length = 450
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ V WAR IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 253 VTNICQAADKQLFTLVAWARRIPHFTELPLEDQVILLRAGWNELLIAAFSHRSIVVKDGI 312
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A GLH +A + RV E V K++ + +D E CL+AIVLF +
Sbjct: 313 LL-ATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGL 371
Query: 123 TGV-----LLKALHVDSAEYS 138
+ + L + ++ EYS
Sbjct: 372 SAIQEVEALREKVYASLEEYS 392
>gi|194754966|ref|XP_001959763.1| GF13031 [Drosophila ananassae]
gi|190621061|gb|EDV36585.1| GF13031 [Drosophila ananassae]
Length = 552
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-VAP 62
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL
Sbjct: 352 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 411
Query: 63 LLAAAGLHASPMA----ADRVVAFMD---HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L + H + + D + + +R E K KA+ VD AE++CLKAIVLF
Sbjct: 412 ALFSVAEHCNNLENNANGDTCITKEELAADVRSLHEIFCKYKAVLVDPAEFACLKAIVLF 471
Query: 116 TTGKR 120
R
Sbjct: 472 RPETR 476
>gi|327315358|ref|NP_001192144.1| retinoic acid receptor RXR-beta isoform 3 [Mus musculus]
gi|18044456|gb|AAH19432.1| Rxrb protein [Mus musculus]
gi|74150089|dbj|BAE24359.1| unnamed protein product [Mus musculus]
Length = 414
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 213 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 272
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 273 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 329
>gi|390432213|gb|AFL91698.1| retinoid X receptor isoform c [Azumapecten farreri]
Length = 466
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ V WAR IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 269 VTNICQAADKQLFTLVAWARRIPHFTELPLEDQVILLRAGWNELLIAAFSHRSIVVKDGI 328
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A GLH +A + RV E V K++ + +D E CL+AIVLF +
Sbjct: 329 LL-ATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGL 387
Query: 123 TGV-----LLKALHVDSAEYS 138
+ + L + ++ EYS
Sbjct: 388 SAIQEVEALREKVYASLEEYS 408
>gi|62088068|dbj|BAD92481.1| retinoid X receptor, beta variant [Homo sapiens]
Length = 577
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 376 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDG- 434
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 435 ILLATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 492
>gi|147223296|emb|CAN13298.1| retinoid X receptor, beta [Sus scrofa]
Length = 414
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 213 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 272
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 273 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 329
>gi|327176811|gb|AEA29832.1| retinoid X receptor splice variant [Homarus americanus]
Length = 410
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L VEWA++IP F DL V DQV LL+ W+EL + + S SM +
Sbjct: 209 VTNICQAADRHLVQLVEWAKHIPHFTDLPVEDQVVLLKAGWNELLIASFSHRSMGVEDGI 268
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
+LA +H S V D RV E V K+K + +D E CL++IVL+ +
Sbjct: 269 VLATGLVVHRSSAHQAGVGTIFD--RVLSELVAKMKEMKMDKTELGCLRSIVLYNPDAKG 326
Query: 122 FT 123
T
Sbjct: 327 LT 328
>gi|211939465|pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939466|pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939467|pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
gi|211939468|pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + L + VEWA+ IP F DL + DQV LLR W+EL + S S+ +
Sbjct: 29 VTNICQAADKQLVTLVEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDGI 88
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A+GLH +A + RV E V K++ + +D E CL+AIVLF +
Sbjct: 89 LL-ASGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGL 147
Query: 123 T 123
T
Sbjct: 148 T 148
>gi|52783388|sp|Q7SYN5.1|RXRBA_DANRE RecName: Full=Retinoic acid receptor RXR-beta-A; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-A;
AltName: Full=Retinoid X receptor beta-A
gi|32451843|gb|AAH54649.1| Rxrba protein [Danio rerio]
Length = 471
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 15/128 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 260 VTNICQAADKQLFTLVEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGI 319
Query: 63 LLAAAGLHASPMAA---------DRVVAFMDHI-----RVFQEQVEKLKALHVDSAEYSC 108
LL A GLH +A DR A + RV E V K++ + +D E C
Sbjct: 320 LL-ATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGC 378
Query: 109 LKAIVLFT 116
L+AI+LF
Sbjct: 379 LRAIILFN 386
>gi|24308520|ref|NP_571350.1| retinoic acid receptor RXR-beta-A [Danio rerio]
gi|1046299|gb|AAC59722.1| retinoid X receptor epsilon [Danio rerio]
gi|94733758|emb|CAK11471.1| retinoid x receptor, beta [Danio rerio]
gi|1583307|prf||2120366B retinoid X receptor:ISOTYPE=epsilon
Length = 438
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 68/128 (53%), Gaps = 15/128 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 227 VTNICQAADKQLFTLVEWAKRIPHFSELSLDDQVILLRAGWNELLIASFSHRSITVKDGI 286
Query: 63 LLAAAGLHASPMAA---------DRVVAFMDHI-----RVFQEQVEKLKALHVDSAEYSC 108
LL A GLH +A DR A + RV E V K++ + +D E C
Sbjct: 287 LL-ATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGC 345
Query: 109 LKAIVLFT 116
L+AI+LF
Sbjct: 346 LRAIILFN 353
>gi|344267618|ref|XP_003405663.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Loxodonta africana]
Length = 596
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 381 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R MDHI QE + L +D EY+ LKAIVL
Sbjct: 441 ATILATFVNCLHSSLQQDKMSTERRKLLMDHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
>gi|1173533|gb|AAC53253.1| orphan receptor [Mus musculus]
gi|1537010|gb|AAC52787.1| orphan receptor [Mus musculus]
Length = 590
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++VA +LA
Sbjct: 380 IGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNVATILA 439
Query: 66 A------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+ L M+A+R + M+HI QE + L +D EY+ LKAIVLF+
Sbjct: 440 TFVNCLHSSLQQDKMSAERRKSLMEHIFKLQEFCNSMVKLCIDGHEYAYLKAIVLFS 496
>gi|195486253|ref|XP_002091427.1| GE13645 [Drosophila yakuba]
gi|194177528|gb|EDW91139.1| GE13645 [Drosophila yakuba]
Length = 654
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-VAP 62
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL
Sbjct: 459 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 518
Query: 63 LLAAAGLHASPMA----ADRVVAFMD---HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L + H + + D + +R E K KA+ VD AE++CLKAIVLF
Sbjct: 519 ALFSVAEHCNNLENNANGDTCTTKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 578
Query: 116 TTGKR 120
R
Sbjct: 579 RPETR 583
>gi|6983809|emb|CAB75361.1| USP protein [Tenebrio molitor]
Length = 408
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G++NIC+ + LF V+WA+ IP F L ++DQV LLR W+EL + S S+ A
Sbjct: 211 GVNNICQATNKQLFQLVQWAKLIPHFTSLPMSDQVLLLRAGWNELLIAAFSHRSIQAQDA 270
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GL + +A V + RV E V K+K + +D E CL+AI+L+
Sbjct: 271 IVL-ATGLTVNKTSAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYN 324
>gi|390432215|gb|AFL91699.1| retinoid X receptor isoform d [Azumapecten farreri]
Length = 470
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ V WAR IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 273 VTNICQAADKQLFTLVAWARRIPHFTELPLEDQVILLRAGWNELLIAAFSHRSIVVKDGI 332
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A GLH +A + RV E V K++ + +D E CL+AIVLF +
Sbjct: 333 LL-ATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFNPDAKGL 391
Query: 123 TGV-----LLKALHVDSAEYS 138
+ + L + ++ EYS
Sbjct: 392 SAIQEVEALREKVYASLEEYS 412
>gi|348541131|ref|XP_003458040.1| PREDICTED: retinoic acid receptor RXR-beta-A isoform 2 [Oreochromis
niloticus]
Length = 462
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 17/128 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 253 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGI 312
Query: 63 LLAAAGLHASPMAA---------DR-----VVAFMDHIRVFQEQVEKLKALHVDSAEYSC 108
LL A GLH +A DR V A D RV E V K++ + +D E C
Sbjct: 313 LL-ATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFD--RVLTELVSKMRDMQMDKTELGC 369
Query: 109 LKAIVLFT 116
L+AI+LF
Sbjct: 370 LRAIILFN 377
>gi|221043908|dbj|BAH13631.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 146 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 205
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 206 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 262
>gi|417410382|gb|JAA51665.1| Putative retinoic acid receptor rxr-beta, partial [Desmodus
rotundus]
Length = 398
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 197 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 256
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 257 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 313
>gi|226316409|gb|ACO44668.1| retinoid X receptor isoform 1 [Crangon crangon]
Length = 405
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L VEWA++IP F DL V DQV LL+ W+EL + S S+ +
Sbjct: 204 VTNICQAADRHLVQLVEWAKHIPHFTDLPVQDQVVLLKAGWNELLIAAFSHRSIGVKDGI 263
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
+LA +H S V D RV E V K+K + +D E CL++IVLF R
Sbjct: 264 VLATGLVVHRSSAHQAGVGTIFD--RVLSELVAKMKEMKMDKTELGCLRSIVLFNPDARG 321
Query: 122 FT 123
T
Sbjct: 322 LT 323
>gi|440909606|gb|ELR59495.1| Retinoic acid receptor RXR-beta [Bos grunniens mutus]
Length = 518
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 317 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 376
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 377 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 433
>gi|226316411|gb|ACO44669.1| retinoid X receptor isoform 2 [Crangon crangon]
Length = 400
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L VEWA++IP F DL V DQV LL+ W+EL + S S+ +
Sbjct: 199 VTNICQAADRHLVQLVEWAKHIPHFTDLPVQDQVVLLKAGWNELLIAAFSHRSIGVKDGI 258
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
+LA +H S V D RV E V K+K + +D E CL++IVLF R
Sbjct: 259 VLATGLVVHRSSAHQAGVGTIFD--RVLSELVAKMKEMKMDKTELGCLRSIVLFNPDARG 316
Query: 122 FT 123
T
Sbjct: 317 LT 318
>gi|51873224|gb|AAU12572.1| retinoid X receptor [Reishia clavigera]
Length = 431
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ V+WA+ IP F +L + DQV LLR W+EL + S S +
Sbjct: 233 VTNICQAADKQLFTLVDWAKRIPHFVELPLEDQVILLRAGWNELLIGGFSHRSTQV-TDG 291
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A + RV E V K++ + +D E CL+AIVLF
Sbjct: 292 ILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFN 345
>gi|410926023|ref|XP_003976478.1| PREDICTED: retinoic acid receptor RXR-beta-A-like isoform 2
[Takifugu rubripes]
Length = 463
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 17/128 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 254 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSISVKDGI 313
Query: 63 LLAAAGLHASPMAA---------DR-----VVAFMDHIRVFQEQVEKLKALHVDSAEYSC 108
LL A GLH +A DR V A D RV E V K++ + +D E C
Sbjct: 314 LL-ATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFD--RVLTELVSKMRDMQMDKTELGC 370
Query: 109 LKAIVLFT 116
L+AI+LF
Sbjct: 371 LRAIILFN 378
Score = 40.4 bits (93), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
S C PN+ + NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 245 SGCSSPND--PVTNICQAADKQLFTLVEWAKRIPHFSEL 281
>gi|323461807|dbj|BAJ76722.1| retinoid X receptor isoform 1 [Reishia clavigera]
Length = 442
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ V+WA+ IP F +L + DQV LLR W+EL + S S +
Sbjct: 244 VTNICQAADKQLFTLVDWAKRIPHFVELPLEDQVILLRAGWNELLIGGFSHRSTQV-TDG 302
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A + RV E V K++ + +D E CL+AIVLF
Sbjct: 303 ILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFN 356
>gi|20663783|pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663784|pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663785|pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
gi|20663786|pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 38 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 97
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 98 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 150
>gi|14994052|gb|AAK76400.1| retinoid X receptor beta [Scophthalmus maximus]
Length = 277
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 69/128 (53%), Gaps = 17/128 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 85 VTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGI 144
Query: 63 LLAAAGLHASPMAA---------DR-----VVAFMDHIRVFQEQVEKLKALHVDSAEYSC 108
LL A GLH +A DR V A D RV E V K++ + +D E C
Sbjct: 145 LL-ATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFD--RVLTELVSKMRDMQMDKTELGC 201
Query: 109 LKAIVLFT 116
L+AI+LF
Sbjct: 202 LRAIILFN 209
>gi|323461809|dbj|BAJ76723.1| retinoid X receptor isoform 2 [Reishia clavigera]
Length = 447
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ V+WA+ IP F +L + DQV LLR W+EL + S S +
Sbjct: 249 VTNICQAADKQLFTLVDWAKRIPHFVELPLEDQVILLRAGWNELLIGGFSHRSTQVTDGI 308
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A + RV E V K++ + +D E CL+AIVLF
Sbjct: 309 LL-ATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAIVLFN 361
>gi|338718022|ref|XP_001493349.2| PREDICTED: retinoic acid receptor RXR-beta-like [Equus caballus]
Length = 347
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 146 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 205
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 206 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 262
>gi|16565495|gb|AAL26246.1| retinoid X receptor [Petromyzon marinus]
Length = 237
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEW++ +P F +L + DQV LLR W+EL + + S S+ +
Sbjct: 57 VTNICQAADKQLFTLVEWSKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIGVSDGI 116
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL GLH +A RV E V K++ +++D AE CL+AIVLF
Sbjct: 117 LL-TTGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMNMDKAELGCLRAIVLFN 169
>gi|538261|gb|AAA21474.1| TR4 orphan receptor [Homo sapiens]
Length = 615
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ AR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 400 LNVHYICESASRLLFLSMHRARSIPAFQGLGQDCNTSLVRACWNELFTLGLAQCAQVMSL 459
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + +D EY+ LKAIVL
Sbjct: 460 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMANWDIDGYEYAYLKAIVL 519
Query: 115 FT 116
F+
Sbjct: 520 FS 521
>gi|354801981|gb|AER39752.1| retinoid X receptor [Sepia officinalis]
Length = 292
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NI + A LF+ VEWA+ IP F L + DQV LLR W+EL + S S+P+
Sbjct: 95 VTNIFQAAEEQLFTLVEWAKRIPHFTKLSLDDQVTLLRAGWNELLIAGFSHRSIPVKDGI 154
Query: 63 LLAAAGLHASPMAADRVVAFMDHI--RVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A G+H +A A +D I RV E V K++ + +D +E CL+AIVLF
Sbjct: 155 LL-ATGIHVHRSSAHH--AGVDTIFDRVLSELVAKMREMKMDKSELGCLRAIVLF 206
>gi|321465568|gb|EFX76568.1| hypothetical protein DAPPUDRAFT_106791 [Daphnia pulex]
Length = 310
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 66/117 (56%), Gaps = 10/117 (8%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
DN+ E AARLLF AV+WA+++P F L DQV LL WSELF++ A Q +P+ PL
Sbjct: 128 DNVYETAARLLFMAVKWAKSLPSFAGLPFRDQVILLEESWSELFLICAIQFCLPMDNNPL 187
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ A + P +A V + + + VD AE++CLKAI+LF + R
Sbjct: 188 FSLAHFN-QPHSATLGCG---------NGVTRFRVVAVDPAEFACLKAIILFKSETR 234
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
DN+ E AARLLF AV+WA+++P F L R V
Sbjct: 128 DNVYETAARLLFMAVKWAKSLPSFAGLPFRDQV 160
>gi|49259353|pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 39 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 98
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 99 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 151
>gi|390432209|gb|AFL91696.1| retinoid X receptor isoform a [Azumapecten farreri]
Length = 446
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ V WAR IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 249 VTNICQAADKQLFTLVAWARRIPHFTELPLEDQVILLRAGWNELLIAAFSHRSIVVKDGI 308
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A GLH +A + RV E V +++ + +D E CL+AIVLF +
Sbjct: 309 LL-ATGLHVHRSSAHQAGVGTIFDRVLTELVARMREMKMDKTELGCLRAIVLFNPDAKGL 367
Query: 123 TGV-----LLKALHVDSAEYS 138
+ + L + ++ EYS
Sbjct: 368 SAIQEVEALREKVYASLEEYS 388
>gi|148362145|gb|ABQ59669.1| RXRB [Salmo salar]
Length = 428
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 15/128 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ +P F +L + DQV LLR W+EL + + S S+ +
Sbjct: 217 VTNICQAADKQLFTLVEWAKRVPHFSELAMDDQVILLRAGWNELLIASFSHRSISVKDGI 276
Query: 63 LLAAAGLHASPMAA---------DRVVAFMDHI-----RVFQEQVEKLKALHVDSAEYSC 108
LL A GLH +A DR A + RV E V K++ + +D E C
Sbjct: 277 LL-ATGLHVHRNSAHSAGVGVIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGC 335
Query: 109 LKAIVLFT 116
L+AI+LF
Sbjct: 336 LRAIILFN 343
>gi|146147384|gb|ABQ01987.1| retinoid X receptor beta [Salmo salar]
gi|148362152|gb|ABQ59675.1| RXR [Salmo salar]
Length = 430
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 15/128 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ +P F +L + DQV LLR W+EL + + S S+ +
Sbjct: 219 VTNICQAADKQLFTLVEWAKRVPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGI 278
Query: 63 LLAAAGLHASPMAA---------DRVVAFMDHI-----RVFQEQVEKLKALHVDSAEYSC 108
LL A GLH +A DR A + RV E V K++ + +D E C
Sbjct: 279 LL-ATGLHVHRNSAHSAGVGAIFDRESAHNAEVGAIFDRVLTELVSKMRDMQMDKTELGC 337
Query: 109 LKAIVLFT 116
L+AI+LF
Sbjct: 338 LRAIILFN 345
>gi|148234156|ref|NP_001081830.1| retinoid X receptor, beta [Xenopus laevis]
gi|685085|gb|AAC60748.1| xRXR beta [Xenopus laevis]
Length = 452
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 4/117 (3%)
Query: 3 IDNICELAARLLFSAVEWARNIPFF---PDLQVTDQVALLRLVWSELFVLNASQCSMPLH 59
+ NIC+ A + LF+ VEWA+ IP F P+L + DQV LLR W+EL + + S S+
Sbjct: 252 VTNICQDADKQLFTLVEWAKRIPHFSELPELPLDDQVILLRAGWNELLIASFSHRSISEK 311
Query: 60 VAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K++ + +D E CL+AI+LF
Sbjct: 312 DGILL-ATGLHVHRNSAHSAGVGAIFERVLTELVSKMRDMRMDKTELGCLRAIILFN 367
>gi|195155260|ref|XP_002018523.1| GL17753 [Drosophila persimilis]
gi|194114319|gb|EDW36362.1| GL17753 [Drosophila persimilis]
Length = 259
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-VAP 62
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL
Sbjct: 59 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 118
Query: 63 LLAAAGLHASPMA----ADRVVAFMD---HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L + H + + D + +R E K KA+ VD AE++CLKAIVLF
Sbjct: 119 ALFSVAEHCNNLENNANGDTCTTKEELAADVRTLHEIFCKYKAVLVDPAEFACLKAIVLF 178
Query: 116 TTGKR 120
R
Sbjct: 179 RPETR 183
>gi|311256682|ref|XP_003126756.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like [Sus
scrofa]
Length = 605
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 390 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 449
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 450 ATILATFVNCLHSSLQQDKMSTERRKVLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 509
Query: 115 FT 116
F+
Sbjct: 510 FS 511
>gi|395538223|ref|XP_003771084.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Sarcophilus harrisii]
Length = 605
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QCS ++V
Sbjct: 390 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCSQVMNV 449
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LAA L ++ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 450 AMILAAFVNRLHNSLQQDKLSTERGKVMMEHIFKLQEFCNSMVKLCLDGYEYAYLKAIVL 509
Query: 115 FT 116
F+
Sbjct: 510 FS 511
>gi|5631312|dbj|BAA82618.1| retinoid X receptor [Polyandrocarpa misakiensis]
Length = 363
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L + VEWA+ IP F L + DQV LLR W+EL + + S S+ + +
Sbjct: 139 VSNICKAADRQLVTLVEWAKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSIDVKDSI 198
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A+GLH +A + RV E V K++ + +D E CL+AIVLF
Sbjct: 199 LL-ASGLHVHRHSAHQAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAIVLFN 251
>gi|35311|emb|CAA46456.1| MHC class I promoter binding protein [Homo sapiens]
Length = 231
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 5/118 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 30 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 89
Query: 63 LLAAAGLHASPMAADR--VVAFMDH--IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 90 LL-ATGLHVHRNSAHSAGVGAIFDRSLSRVLTELVSKMRDMRMDKTELGCLRAIILFN 146
>gi|328698474|ref|XP_001948311.2| PREDICTED: nuclear receptor subfamily 2 group C member 2-like
[Acyrthosiphon pisum]
Length = 486
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 71/120 (59%), Gaps = 8/120 (6%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
ICE A+RLLF ++ W +++P F L Q++LL+ WS+LF+L +QC+ L + P+L+
Sbjct: 276 ICESASRLLFLSINWVQSLPVFQLLTFEVQLSLLKSSWSQLFILGLTQCAQALSLIPVLS 335
Query: 66 AA-------GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
+ +H SP ++ + +D++ Q+ + +++ + V+ EY+ LK I LF T
Sbjct: 336 SMITHLQNDEIHNSPNSS-KAKELIDYLNRIQDYITEMENIEVNDVEYAYLKLISLFNTD 394
>gi|197941310|gb|ACH78359.1| retinoid X receptor beta, partial [Sebastiscus marmoratus]
Length = 450
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 68/128 (53%), Gaps = 17/128 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 254 VTNICQAADKQLFTLVEWAKRIPHFSELALDDQVILLRAGWNELLIASFSHRSISVKDGI 313
Query: 63 LLAAAGLHASPMAA---------DR-----VVAFMDHIRVFQEQVEKLKALHVDSAEYSC 108
LL A GLH +A DR V A D RV E V K++ + +D E C
Sbjct: 314 LL-ATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFD--RVLTELVSKMRDMQMDKTELGC 370
Query: 109 LKAIVLFT 116
L AI+LF
Sbjct: 371 LPAIILFN 378
>gi|16905398|gb|AAL31315.1|L26957_1 orphan receptor [Mus musculus]
gi|1049076|gb|AAC29502.1| TR2 [Mus musculus]
Length = 590
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 375 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 434
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R + M+HI QE + L +D EY+ LKAIVL
Sbjct: 435 ATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQEFCNSMVKLCIDGHEYAYLKAIVL 494
Query: 115 FT 116
F+
Sbjct: 495 FS 496
>gi|432111870|gb|ELK34912.1| Nuclear receptor subfamily 2 group C member 1 [Myotis davidii]
Length = 549
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 334 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 393
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R M+HI QE + L VD EY+ LKAIVL
Sbjct: 394 ATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCVDGYEYAYLKAIVL 453
Query: 115 FT 116
F+
Sbjct: 454 FS 455
>gi|354478543|ref|XP_003501474.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Cricetulus griseus]
gi|344252291|gb|EGW08395.1| Nuclear receptor subfamily 2 group C member 1 [Cricetulus griseus]
Length = 590
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 375 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 434
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R + M+HI QE + L +D EY+ LKAIVL
Sbjct: 435 ATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 494
Query: 115 FT 116
F+
Sbjct: 495 FS 496
>gi|73978201|ref|XP_854792.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Canis
lupus familiaris]
Length = 605
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 390 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 449
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 450 ATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 509
Query: 115 FT 116
F+
Sbjct: 510 FS 511
>gi|444720729|gb|ELW61505.1| Nuclear receptor subfamily 2 group C member 1 [Tupaia chinensis]
Length = 606
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 391 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 450
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 451 ATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 510
Query: 115 FT 116
F+
Sbjct: 511 FS 512
>gi|74147214|dbj|BAE27509.1| unnamed protein product [Mus musculus]
Length = 590
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 375 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 434
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R + M+HI QE + L +D EY+ LKAIVL
Sbjct: 435 ATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQEFCNSMVKLCIDGHEYAYLKAIVL 494
Query: 115 FT 116
F+
Sbjct: 495 FS 496
>gi|66864094|dbj|BAD99298.1| ultraspiracle [Leptinotarsa decemlineata]
Length = 384
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ + L VEWA+ IP F L V+DQV LLR W+EL + + S SM
Sbjct: 188 VTNICQATNKQLLQLVEWAKLIPHFTSLPVSDQVLLLRAGWNELLIASFSHRSMQTQEGI 247
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
+L A GL + A V + RV E V K+K + +D E CL+AI+L+ R
Sbjct: 248 IL-ATGLTINKSTAQAVGVGNIYDRVLSELVNKMKEMRMDKTELGCLRAIILYNPDVRGL 306
Query: 123 TG-----VLLKALHVDSAEYS 138
+L + ++ + EY+
Sbjct: 307 QSTQEVEILREKIYENLEEYT 327
>gi|281340400|gb|EFB15984.1| hypothetical protein PANDA_007909 [Ailuropoda melanoleuca]
Length = 587
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 372 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 431
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 432 ATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 491
Query: 115 FT 116
F+
Sbjct: 492 FS 493
>gi|1890579|emb|CAA72244.1| orphan receptor [Mus musculus]
Length = 590
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 375 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 434
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R + M+HI QE + L +D EY+ LKAIVL
Sbjct: 435 ATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQEFCNSMVKLCIDGHEYAYLKAIVL 494
Query: 115 FT 116
F+
Sbjct: 495 FS 496
>gi|195426545|ref|XP_002061388.1| GK20892 [Drosophila willistoni]
gi|194157473|gb|EDW72374.1| GK20892 [Drosophila willistoni]
Length = 573
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPL----- 58
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL
Sbjct: 371 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 430
Query: 59 -------HVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKA 111
H L + + +A +R E K KA+ VD AE++CLKA
Sbjct: 431 ALFSVAEHCNNLENNNNANGETCVSKEELAA--DVRTLHEIFCKYKAVLVDPAEFACLKA 488
Query: 112 IVLFTTGKR 120
IVLF R
Sbjct: 489 IVLFRPETR 497
>gi|149742912|ref|XP_001493970.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 1
[Equus caballus]
Length = 605
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 390 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 449
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 450 ATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 509
Query: 115 FT 116
F+
Sbjct: 510 FS 511
>gi|171846245|ref|NP_035759.3| nuclear receptor subfamily 2 group C member 1 [Mus musculus]
gi|341942228|sp|Q505F1.3|NR2C1_MOUSE RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2; Short=mTR2
gi|63101502|gb|AAH94580.1| Nr2c1 protein [Mus musculus]
gi|74143559|dbj|BAE28842.1| unnamed protein product [Mus musculus]
gi|111598870|gb|AAH90662.1| Nr2c1 protein [Mus musculus]
Length = 590
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 375 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 434
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R + M+HI QE + L +D EY+ LKAIVL
Sbjct: 435 ATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQEFCNSMVKLCIDGHEYAYLKAIVL 494
Query: 115 FT 116
F+
Sbjct: 495 FS 496
>gi|156389667|ref|XP_001635112.1| predicted protein [Nematostella vectensis]
gi|156222202|gb|EDO43049.1| predicted protein [Nematostella vectensis]
Length = 355
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 4/111 (3%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
NI + A RLL +++ +ARN+P F L DQ+ LL W ELF+L+A+ ++PL +A LL
Sbjct: 166 NIQDAATRLLSASIRFARNVPCFTRLPFRDQIILLEEGWKELFLLDAAYWALPLEIASLL 225
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A G D I++ QE + +L++ +D E +CLKAIVLF
Sbjct: 226 AVTG----GCHGDSYRHKASEIKLLQELLARLRSFQMDLNELACLKAIVLF 272
>gi|301767748|ref|XP_002919289.1| PREDICTED: nuclear receptor subfamily 2 group C member 1-like
[Ailuropoda melanoleuca]
Length = 605
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 390 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 449
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 450 ATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 509
Query: 115 FT 116
F+
Sbjct: 510 FS 511
>gi|431905326|gb|ELK10371.1| Nuclear receptor subfamily 2 group C member 1 [Pteropus alecto]
Length = 605
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 390 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 449
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 450 ATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 509
Query: 115 FT 116
F+
Sbjct: 510 FS 511
>gi|18859343|ref|NP_571313.1| retinoic acid receptor RXR-beta-B [Danio rerio]
gi|52783418|sp|Q90417.1|RXRBB_DANRE RecName: Full=Retinoic acid receptor RXR-beta-B; AltName:
Full=Nuclear receptor subfamily 2 group B member 2-B;
AltName: Full=Retinoic acid receptor RXR-delta; AltName:
Full=Retinoid X receptor beta-B; AltName: Full=Retinoid
X receptor delta
gi|1046297|gb|AAC59721.1| retinoid X receptor delta [Danio rerio]
gi|1583306|prf||2120366A retinoid X receptor:ISOTYPE=delta
Length = 422
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ +P F D+ + DQV LLR W+EL + S S+ +
Sbjct: 214 VTNICQAADKQLFTLVEWAKRVPHFSDVPLDDQVILLRAGWNELLIAAFSHRSISVKDEI 273
Query: 63 LLAAAGLHASPMAADR--VVAFMDH------------IRVFQEQVEKLKALHVDSAEYSC 108
LL A GLH + V AF D RV E V K++ + +D E C
Sbjct: 274 LL-ATGLHVPKESTHNLGVEAFFDRESSHSAEVGALFDRVLTELVCKMRDMQMDKTELGC 332
Query: 109 LKAIVLFTTGKRIFT 123
L+AIVLF + T
Sbjct: 333 LRAIVLFNPDAKGLT 347
>gi|296487946|tpg|DAA30059.1| TPA: nuclear receptor subfamily 2, group C, member 1 [Bos taurus]
Length = 608
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 393 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 452
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L ++A+R M+HI QE + L +D EY+ LKAIVL
Sbjct: 453 ATILATFVNCLHSSLQQDKISAERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 512
Query: 115 FT 116
F+
Sbjct: 513 FS 514
>gi|118150918|ref|NP_001071372.1| nuclear receptor subfamily 2 group C member 1 [Bos taurus]
gi|226733406|sp|A0JNE3.1|NR2C1_BOVIN RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|117306695|gb|AAI26644.1| Nuclear receptor subfamily 2, group C, member 1 [Bos taurus]
Length = 608
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 393 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 452
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L ++A+R M+HI QE + L +D EY+ LKAIVL
Sbjct: 453 ATILATFVNCLHSSLQQDKISAERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 512
Query: 115 FT 116
F+
Sbjct: 513 FS 514
>gi|410965258|ref|XP_003989167.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Felis
catus]
Length = 605
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 390 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 449
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 450 ATILATFVNCLHGSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 509
Query: 115 FT 116
F+
Sbjct: 510 FS 511
>gi|170586218|ref|XP_001897876.1| photoreceptor-specific nuclear receptor [Brugia malayi]
gi|158594271|gb|EDP32855.1| photoreceptor-specific nuclear receptor, putative [Brugia malayi]
Length = 486
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 12/117 (10%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+N+ E + RLLF A++WA+N+P F L + DQ+ LL+ W +LF+L+ Q S+P+ PL
Sbjct: 309 ENVQEASTRLLFLAIKWAKNLPSFASLSLRDQLKLLKENWCDLFLLSVFQWSLPMDKCPL 368
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
L L P + R + ++++ +D E++CLKAIVLF R
Sbjct: 369 LNT--LQTDPSS----------FRYLNDLFFRIRSYGIDHGEFACLKAIVLFRPETR 413
>gi|84028535|gb|ABC49726.1| retinoid X receptor 3 [Petromyzon marinus]
Length = 462
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC+ A + LF+ VEW++ +P F +L + DQV LLR W+EL + + S S+ +
Sbjct: 267 VTSICQAADKQLFTLVEWSKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIGVSDG- 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A RV E V K++ +++D AE CL+A VLF
Sbjct: 326 ILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMNMDKAELGCLRATVLFN 379
>gi|296212600|ref|XP_002752912.1| PREDICTED: nuclear receptor subfamily 2 group C member 1
[Callithrix jacchus]
Length = 604
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + + L++ W+ELF L +QC ++V
Sbjct: 389 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSILLVKAYWNELFTLGLAQCWQVMNV 448
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R MDHI QE + L +D EY+ LKAIVL
Sbjct: 449 ATILATFVNCLHNSLQQDKMSTERRKLLMDHIFRLQEFCNSMVKLCIDGYEYAYLKAIVL 508
Query: 115 FT 116
F+
Sbjct: 509 FS 510
>gi|426373748|ref|XP_004053750.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Gorilla
gorilla gorilla]
Length = 582
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 367 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 426
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 427 ATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 486
Query: 115 FT 116
F+
Sbjct: 487 FS 488
>gi|197098516|ref|NP_001127276.1| nuclear receptor subfamily 2 group C member 1 [Pongo abelii]
gi|75061946|sp|Q5RCZ5.1|NR2C1_PONAB RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|55727212|emb|CAH90362.1| hypothetical protein [Pongo abelii]
Length = 601
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 389 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 448
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 449 ATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 508
Query: 115 FT 116
F+
Sbjct: 509 FS 510
>gi|190336859|gb|AAI62302.1| Retinoid x receptor, beta b [Danio rerio]
gi|190337908|gb|AAI62301.1| Retinoid x receptor, beta b [Danio rerio]
Length = 422
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 15/135 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ +P F +L + DQV LLR W+EL + S S+ +
Sbjct: 214 VTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIAAFSHRSISVKDEI 273
Query: 63 LLAAAGLHASPMAADR--VVAFMDH------------IRVFQEQVEKLKALHVDSAEYSC 108
LL A GLH + V AF D RV E V K++ + +D E C
Sbjct: 274 LL-ATGLHVPKESTHNLGVEAFFDRESSHSAEVGALFDRVLTELVCKMRDMQMDKTELGC 332
Query: 109 LKAIVLFTTGKRIFT 123
L+AIVLF + T
Sbjct: 333 LRAIVLFNPDAKGLT 347
>gi|198285543|gb|ACH85310.1| retinoid x receptor beta a [Salmo salar]
Length = 373
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 70/127 (55%), Gaps = 15/127 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 164 VTNICQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGV 223
Query: 63 LLAAA----GLHASPMAA--DR-------VVAFMDHIRVFQEQVEKLKALHVDSAEYSCL 109
LLA H++ +AA DR V A D RV E V K++ + +D E CL
Sbjct: 224 LLANELHRDNAHSAGVAAIFDRESVQSAEVGAIFD--RVLTELVSKMRDMQMDKTELGCL 281
Query: 110 KAIVLFT 116
+AIVLF
Sbjct: 282 RAIVLFN 288
>gi|154936862|dbj|BAF75376.1| retinoid X receptor [Marsupenaeus japonicus]
Length = 442
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC+ A R L VEWA++IP F DL V DQV LL+ W+EL + + S SM +
Sbjct: 241 VTHICQAADRHLVQLVEWAKHIPHFTDLPVDDQVILLKAGWNELLIASFSHRSMGVKDGI 300
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H S V D RV E V K+K + +D E CL++IVLF
Sbjct: 301 VLATGLVVHRSSAHHAGVGDIFD--RVLSELVAKMKEMKMDKTELGCLRSIVLFN 353
>gi|358251510|gb|AEU04704.1| retinoid X receptor beta [Lateolabrax japonicus]
Length = 444
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 69/127 (54%), Gaps = 15/127 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ L
Sbjct: 235 VTNICQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIALKDGV 294
Query: 63 LLAAA----GLHASPMAA--DR-------VVAFMDHIRVFQEQVEKLKALHVDSAEYSCL 109
LLA+ H++ + A DR V A D RV E V K++ + +D E CL
Sbjct: 295 LLASELQRDSAHSAGVGAIFDRESVQSAEVGAIFD--RVLTELVNKMRDMQMDKTELGCL 352
Query: 110 KAIVLFT 116
+AI LF
Sbjct: 353 RAIALFN 359
>gi|402887264|ref|XP_003907017.1| PREDICTED: LOW QUALITY PROTEIN: nuclear receptor subfamily 2 group
C member 1 [Papio anubis]
gi|380816090|gb|AFE79919.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
gi|383421223|gb|AFH33825.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
gi|384949168|gb|AFI38189.1| nuclear receptor subfamily 2 group C member 1 isoform a [Macaca
mulatta]
Length = 604
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 389 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 448
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 449 ATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 508
Query: 115 FT 116
F+
Sbjct: 509 FS 510
>gi|324510528|gb|ADY44403.1| Photoreceptor-specific nuclear receptor [Ascaris suum]
Length = 471
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 72/125 (57%), Gaps = 14/125 (11%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+++ E AARLLF A++WA+N+P F L DQV LL W +LF+L+ Q S+P+ PL
Sbjct: 293 ESVHETAARLLFMAIKWAKNLPSFTLLSFRDQVILLEEGWCDLFLLSVFQWSLPMEKCPL 352
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF---TTGKR 120
L + P++ + +R Q+ +++ ++D E++CLKA+VLF T G +
Sbjct: 353 LTS----TLPLST-------NGLRYLQDLFLRIRNHNIDQGEFACLKALVLFRPETRGLK 401
Query: 121 IFTGV 125
F V
Sbjct: 402 DFAHV 406
>gi|158256074|dbj|BAF84008.1| unnamed protein product [Homo sapiens]
Length = 603
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 388 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 447
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 448 ATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 507
Query: 115 FT 116
F+
Sbjct: 508 FS 509
>gi|68132040|gb|AAY85286.1| TR2, partial [Danio rerio]
Length = 580
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 7/132 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ ++ ICE A+RLLF ++ WAR+IP F L + + L++ W+ELF L CS ++V
Sbjct: 370 LNLNYICESASRLLFLSMHWARSIPAFQALGSENGITLMKACWNELFALGLX-CSHIMNV 428
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+L A L ++ +RV M+HI QE + + D+ EY+ LKA+VL
Sbjct: 429 ETILTAIINHLQTSLDEEKLSPERVKQVMEHIWRMQEFCNSMSRMSPDAYEYAYLKAVVL 488
Query: 115 FTTGKRIFTGVL 126
F+ G L
Sbjct: 489 FSPDHSAVDGTL 500
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 255 NIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+ + ++ ICE A+RLLF ++ WAR+IP F L +G+
Sbjct: 368 DFLNLNYICESASRLLFLSMHWARSIPAFQALGSENGI 405
>gi|339887|gb|AAA36761.1| steroid receptor TR2-11 [Homo sapiens]
Length = 603
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 388 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 447
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 448 ATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 507
Query: 115 FT 116
F+
Sbjct: 508 FS 509
>gi|332840360|ref|XP_001137621.2| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 1
[Pan troglodytes]
gi|397473630|ref|XP_003808309.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform 2
[Pan paniscus]
gi|410209720|gb|JAA02079.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410255878|gb|JAA15906.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410298356|gb|JAA27778.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
gi|410342159|gb|JAA40026.1| nuclear receptor subfamily 2, group C, member 1 [Pan troglodytes]
Length = 604
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 389 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 448
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 449 ATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 508
Query: 115 FT 116
F+
Sbjct: 509 FS 510
>gi|262070641|gb|ACY08799.1| ultraspiracle, partial [Tribolium destructor]
Length = 283
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
++NIC+ + LF V+WA+ IP F L ++DQV LLR W+EL + S SM A
Sbjct: 99 VNNICQATNKQLFQLVQWAKLIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSMQAQDAI 158
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
+L A GL + A+ V + RV E V K+K + +D E CL+AI+L+ R
Sbjct: 159 VL-ATGLTVNKSTANAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGI 217
Query: 123 TGV 125
V
Sbjct: 218 KSV 220
>gi|189491739|ref|NP_003288.2| nuclear receptor subfamily 2 group C member 1 isoform a [Homo
sapiens]
gi|226693548|sp|P13056.2|NR2C1_HUMAN RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2
gi|119617925|gb|EAW97519.1| nuclear receptor subfamily 2, group C, member 1, isoform CRA_c
[Homo sapiens]
gi|307686061|dbj|BAJ20961.1| nuclear receptor subfamily 2, group C, member 1 [synthetic
construct]
gi|381146193|gb|AFF59487.1| testicular nuclear receptor 2 variant 1 [Homo sapiens]
Length = 603
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 388 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 447
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 448 ATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 507
Query: 115 FT 116
F+
Sbjct: 508 FS 509
>gi|75066579|sp|Q95K90.1|NR2C1_MACFA RecName: Full=Nuclear receptor subfamily 2 group C member 1
gi|14388521|dbj|BAB60786.1| hypothetical protein [Macaca fascicularis]
gi|355762671|gb|EHH62044.1| Orphan nuclear receptor TR2 [Macaca fascicularis]
Length = 603
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 388 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 447
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 448 ATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 507
Query: 115 FT 116
F+
Sbjct: 508 FS 509
>gi|198459166|ref|XP_002138651.1| GA25604, partial [Drosophila pseudoobscura pseudoobscura]
gi|198136600|gb|EDY69209.1| GA25604, partial [Drosophila pseudoobscura pseudoobscura]
Length = 275
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 71/146 (48%), Gaps = 29/146 (19%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPL----- 58
+ + E +ARLLF AV+WA+N+P F L DQV LL WSELF+LNA Q +PL
Sbjct: 59 ETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWCIPLDPTGC 118
Query: 59 -------HVAPL----------------LAAAGLHASPMAADRVVAFM-DHIRVFQEQVE 94
H L L+ GL + D VV + +R E
Sbjct: 119 ALFSVAEHCNNLENNANGDTCTTKEEVSLSTIGLRVLVVRNDIVVGQLAADVRTLHEIFC 178
Query: 95 KLKALHVDSAEYSCLKAIVLFTTGKR 120
K KA+ VD AE++CLKAIVLF R
Sbjct: 179 KYKAVLVDPAEFACLKAIVLFRPETR 204
>gi|189095956|pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095957|pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095958|pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
gi|189095959|pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L + VEWA+ IP F L + DQV LLR W+EL + + S S+ + +
Sbjct: 60 VSNICKAADRQLVTLVEWAKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSIDVKDSI 119
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A+GLH +A + RV E V K++ + +D E CL+A+VLF
Sbjct: 120 LL-ASGLHVHRHSAHQAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAVVLFN 172
>gi|291389741|ref|XP_002711252.1| PREDICTED: nuclear receptor subfamily 2, group C, member 1
[Oryctolagus cuniculus]
Length = 605
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 390 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 449
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 450 ATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 509
Query: 115 FT 116
F+
Sbjct: 510 FS 511
>gi|426224304|ref|XP_004006312.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Ovis
aries]
Length = 608
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 393 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 452
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L + A+R M+HI QE + L +D EY+ LKAIVL
Sbjct: 453 ATILATFVNCLHSSLQQDKIPAERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 512
Query: 115 FT 116
F+
Sbjct: 513 FS 514
>gi|403276111|ref|XP_003929757.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Saimiri
boliviensis boliviensis]
Length = 470
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + + L++ W+ELF L +QC ++V
Sbjct: 255 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSILLVKAYWNELFTLGLAQCWQVMNV 314
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R MDHI QE + L +D EY+ LKAIVL
Sbjct: 315 ATILATFVNCLHNSLQQDKMSIERRKLLMDHIFRLQEFCNSMVKLCIDGYEYAYLKAIVL 374
Query: 115 FT 116
F+
Sbjct: 375 FS 376
>gi|194386016|dbj|BAG65383.1| unnamed protein product [Homo sapiens]
Length = 396
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 181 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 240
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 241 ATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 300
Query: 115 FT 116
F+
Sbjct: 301 FS 302
>gi|395820061|ref|XP_003783394.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Otolemur
garnettii]
Length = 604
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 389 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 448
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ ++ M+HI QE + L +D EY+ LKAIVL
Sbjct: 449 ATILATFVNCLHSSLQQDKMSTEKRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 508
Query: 115 FT 116
F+
Sbjct: 509 FS 510
>gi|16797886|gb|AAL29201.1|AF323688_1 nuclear receptor AmNR8 [Acropora millepora]
Length = 379
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
++ + E+A RLLF V+W RNI F L+ +DQ+ LL+ WS+LF+L +QCS ++P
Sbjct: 173 MEYVYEIATRLLFLTVDWTRNIQAFRTLETSDQLVLLQSSWSDLFMLGVAQCSSSFPLSP 232
Query: 63 LLAAAGLHASPMAADRVVA---------FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
LL A +H + +D + +E + L+ L +D E++ LK+IV
Sbjct: 233 LLTLAAVHMEHKEGNEEQKSNGIMQDSNLLDKMMSIKELLFSLERLEMDLVEFAFLKSIV 292
Query: 114 LFT 116
LF
Sbjct: 293 LFN 295
>gi|380791717|gb|AFE67734.1| nuclear receptor subfamily 2 group F member 6, partial [Macaca
mulatta]
Length = 240
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 62/111 (55%), Gaps = 12/111 (10%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P + LPG + A ++G +A AA+ G +S I+ LLR
Sbjct: 125 AVQRGRIPHS---LPGAV------ATSSGSPPGSALAAVGGGGDLFPGQPVSELIAQLLR 175
Query: 239 AEPYPTARYSQCMQPNNIMG---IDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A IDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 176 AEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 226
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/42 (80%), Positives = 37/42 (88%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWS 44
IDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WS
Sbjct: 199 IDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWS 240
>gi|351712230|gb|EHB15149.1| Nuclear receptor subfamily 2 group C member 1 [Heterocephalus
glaber]
Length = 606
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 391 LNVHYIGESASRLLFLSMHWALSIPSFHALGQENSISLVKAYWNELFTLGLAQCWQVMNV 450
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 451 ATILATFVNCLHGSLQQDKMSPERRKLLMEHIFKLQEFCNSMVRLCIDGHEYAYLKAIVL 510
Query: 115 FT 116
F+
Sbjct: 511 FS 512
>gi|225001484|gb|ACN78602.1| retinoid X receptor 2 [Fenneropenaeus chinensis]
Length = 437
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC+ A R L VEWA++IP F +L V DQV LL+ W+EL + + S SM +
Sbjct: 236 VSHICQAADRHLVQLVEWAKHIPHFTELSVDDQVILLKAGWNELLIASFSHRSMGVKDGI 295
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H S V D RV E V K+K + +D E CL++IVLF
Sbjct: 296 VLATGLVVHRSSAHHAGVGDIFD--RVLSELVAKMKEMKMDKTELGCLRSIVLFN 348
>gi|225001482|gb|ACN78601.1| retinoid X receptor 1 [Fenneropenaeus chinensis]
Length = 442
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC+ A R L VEWA++IP F +L V DQV LL+ W+EL + + S SM +
Sbjct: 241 VSHICQAADRHLVQLVEWAKHIPHFTELSVDDQVILLKAGWNELLIASFSHRSMGVKDGI 300
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H S V D RV E V K+K + +D E CL++IVLF
Sbjct: 301 VLATGLVVHRSSAHHAGVGDIFD--RVLSELVAKMKEMKMDKTELGCLRSIVLFN 353
>gi|84028531|gb|ABC49724.1| retinoid X receptor 1 [Petromyzon marinus]
Length = 476
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC+ A + F+ VEW++ +P F +L + DQV LLR W+EL + + S S+ +
Sbjct: 281 VTSICQAADKQFFTLVEWSKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIGVSDG- 339
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A RV E V K++ +++D AE CL+A VLF
Sbjct: 340 ILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMNMDKAELGCLRATVLFN 393
>gi|195999182|ref|XP_002109459.1| hypothetical protein TRIADDRAFT_49897 [Trichoplax adhaerens]
gi|190587583|gb|EDV27625.1| hypothetical protein TRIADDRAFT_49897 [Trichoplax adhaerens]
Length = 327
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
NIC+ A + LF+ VEWA+ IP F DL V DQV LLR W+EL + S S+ + LL
Sbjct: 134 NICQAADKQLFNLVEWAKKIPHFCDLCVDDQVILLRSGWNELLIAAFSFRSIAVEDGLLL 193
Query: 65 AAAG-LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFT 123
+ +H + + A D R+ E V +++ L +D E CL+AI+LF R T
Sbjct: 194 STGHYIHRTSAHNAGIGAIFD--RILTELVNQMRYLKMDKTELGCLRAIILFNPDVRGLT 251
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 26/112 (23%)
Query: 179 AVQRGRV----PPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYIS 234
AVQ RV P +++ LP + G F T G+ A A +
Sbjct: 70 AVQEERVKNSTPTSKTTLPIAIADG-FPLPTYGNDEMPVEAIRDAES------------T 116
Query: 235 LLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L + + PY MQ N ++ NIC+ A + LF+ VEWA+ IP F DL
Sbjct: 117 LNMNSVPYVE------MQSNPVL---NICQAADKQLFNLVEWAKKIPHFCDL 159
>gi|21955144|ref|NP_665723.1| nuclear receptor subfamily 2 group C member 1 [Rattus norvegicus]
gi|81902145|sp|Q8VIJ4.1|NR2C1_RAT RecName: Full=Nuclear receptor subfamily 2 group C member 1;
AltName: Full=Orphan nuclear receptor TR2; AltName:
Full=Testicular receptor 2
gi|16905400|gb|AAL31316.1|L26398_1 orphan receptor [Rattus norvegicus]
gi|38197570|gb|AAH61822.1| Nr2c1 protein [Rattus norvegicus]
gi|149067156|gb|EDM16889.1| pregnancy specific beta-1-glycoprotein 4, isoform CRA_a [Rattus
norvegicus]
Length = 590
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 67/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 375 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 434
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 435 ATILATFVNCLHNSLQQDKMSPERRKLLMEHIFKLQEFCNSMVKLCIDGHEYAYLKAIVL 494
Query: 115 FT 116
F+
Sbjct: 495 FS 496
>gi|307185619|gb|EFN71557.1| Nuclear receptor subfamily 2 group E member 1 [Camponotus
floridanus]
Length = 373
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 11/115 (9%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+++CE AARLLF V WAR++ +L + DQ+ LL W ELF+L A+Q L PL
Sbjct: 170 ESMCEQAARLLFLNVHWARDLAAGTNLVLEDQLTLLECSWRELFLLAAAQMLPTLDPTPL 229
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
L G + + F+E + A+H+D E++C++AIVLF G
Sbjct: 230 LPPQG-----------IGLAIEVTRFRETLAGFNAMHLDQHEFACIRAIVLFKAG 273
>gi|349605259|gb|AEQ00558.1| Nuclear receptor subfamily 2 group C member 1-like protein, partial
[Equus caballus]
Length = 323
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 207 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 266
Query: 61 APLLAA--AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
A +LA LH+S + +R M+HI QE + L +D EY+ LKAIVLF+
Sbjct: 267 ATILATFVNCLHSS-LQQERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVLFS 323
>gi|28628008|gb|AAO18152.1| USP-RXR [Folsomia candida]
Length = 221
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 5/118 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+G+ +IC+ A + LF VEWA+ +P F +L ++D+V LL W+EL +L + SM +
Sbjct: 106 LGMSDICQAADKQLFQLVEWAKIVPHFNELSLSDRVILLSSGWNELLILGFAHRSMEVKE 165
Query: 61 APLLAAAGLHASPMAADRVVAFMDHI--RVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
A L+ A GL +A + A + HI RV E V K++ + VD AE CLKAI+L
Sbjct: 166 A-LVLANGLTVYRTSAHQ--AGLVHIFDRVLSEIVGKMRDMKVDRAELGCLKAIILLN 220
>gi|312078554|ref|XP_003141789.1| hypothetical protein LOAG_06205 [Loa loa]
gi|307763047|gb|EFO22281.1| hypothetical protein LOAG_06205 [Loa loa]
Length = 493
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 2 GIDN--ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH 59
G++N + E + RLLF A++WA+N+P F L DQ+ LL+ W +LF+L+ Q S+P+
Sbjct: 312 GVENESVQEASTRLLFLAIKWAKNLPSFASLSFRDQLKLLKENWCDLFLLSVFQWSLPME 371
Query: 60 VAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
PLL A L P + R + +++ +D E++CLKA+VLF
Sbjct: 372 KCPLLNA--LQTDPSS----------FRYLNDLFFRIRTYGIDHGEFACLKALVLFRPET 419
Query: 120 R 120
R
Sbjct: 420 R 420
>gi|410905545|ref|XP_003966252.1| PREDICTED: retinoic acid receptor RXR-beta-A-like [Takifugu
rubripes]
Length = 404
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 15/127 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+
Sbjct: 195 VSNICQTADKQLFALVEWAKRIPHFSELPLEDQVILLRAGWNELLIASFSHRSINSKDGV 254
Query: 63 LLAAAGLHASPMAA------DR-------VVAFMDHIRVFQEQVEKLKALHVDSAEYSCL 109
LLA+ S +A DR V A D RV E V K++ + +D E CL
Sbjct: 255 LLASELQRDSANSAGVGAIFDRENVQSAEVGAIFD--RVLTELVNKMRDMQMDKTELGCL 312
Query: 110 KAIVLFT 116
+AIVLF
Sbjct: 313 RAIVLFN 319
>gi|62122587|dbj|BAD93255.1| RXRB [Oryzias latipes]
Length = 427
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 15/126 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 220 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLR--WNELLIASFSHRSISVKDGI 277
Query: 63 LLAAAGLHASPMAADR--VVAFMDHI----------RVFQEQVEKLKALHVDSAEYSCLK 110
LL A GLH +A V A D RV E V K++ + +D E CL+
Sbjct: 278 LL-ATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFERVLTELVSKMRDMQMDKTELGCLR 336
Query: 111 AIVLFT 116
AI+LF
Sbjct: 337 AIILFN 342
>gi|322791504|gb|EFZ15895.1| hypothetical protein SINV_00119 [Solenopsis invicta]
Length = 337
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ ICE AARLLF V WAR++ L + DQ+ LL W ELF+L A+Q L PL
Sbjct: 133 EAICEQAARLLFLNVHWARDLVSGTSLVMEDQLTLLESSWRELFLLAAAQMIPTLDPTPL 192
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
L + L S ++ M + F+E + A+++D E++C++AIVLF G
Sbjct: 193 LPPSMLPQS-------ISLMIEVNRFRETLAGFHAMNLDQHEFACIRAIVLFKAG 240
>gi|47225542|emb|CAG12025.1| unnamed protein product [Tetraodon nigroviridis]
Length = 370
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 15/127 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+
Sbjct: 161 VSNICQTADKQLFALVEWAKRIPHFSELPLEDQVILLRAGWNELLIASFSHRSINSKDGV 220
Query: 63 LLAAAGLHASPMAA------DR-------VVAFMDHIRVFQEQVEKLKALHVDSAEYSCL 109
LLA+ S +A DR V A D RV E V K++ + +D E CL
Sbjct: 221 LLASELQRDSANSAGVGAIFDRENVQSAEVGAIFD--RVLTELVNKMRDMQMDKTELGCL 278
Query: 110 KAIVLFT 116
+AIVLF
Sbjct: 279 RAIVLFN 285
>gi|33386531|emb|CAD45002.1| retinoid X receptor beta [Takifugu rubripes]
Length = 370
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 67/127 (52%), Gaps = 15/127 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+
Sbjct: 161 VSNICQTADKQLFALVEWAKRIPHFSELPLEDQVILLRAGWNELLIASFSHRSINSKDGV 220
Query: 63 LLAAAGLHASPMAA------DR-------VVAFMDHIRVFQEQVEKLKALHVDSAEYSCL 109
LLA+ S +A DR V A D RV E V K++ + +D E CL
Sbjct: 221 LLASELQRDSANSAGVGAIFDRENVQSAEVGAIFD--RVLTELVNKMRDMQMDKTELGCL 278
Query: 110 KAIVLFT 116
+AIVLF
Sbjct: 279 RAIVLFN 285
>gi|282165797|ref|NP_001107766.2| ultraspiracle nuclear receptor [Tribolium castaneum]
gi|270008201|gb|EFA04649.1| ultraspiracle, partial [Tribolium castaneum]
Length = 407
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
IC+ + LF V+WA+ +P F L +TDQV LLR W+EL + S SM A +L
Sbjct: 214 ICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVL- 272
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGV 125
A GL + A V + RV E V K+K + +D E CL+AI+L+ R V
Sbjct: 273 ATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSV 332
>gi|121308144|emb|CAL25729.1| ultraspiracle nuclear receptor [Tribolium castaneum]
Length = 407
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
IC+ + LF V+WA+ +P F L +TDQV LLR W+EL + S SM A +L
Sbjct: 214 ICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVL- 272
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGV 125
A GL + A V + RV E V K+K + +D E CL+AI+L+ R V
Sbjct: 273 ATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSV 332
>gi|156394045|ref|XP_001636637.1| predicted protein [Nematostella vectensis]
gi|156223742|gb|EDO44574.1| predicted protein [Nematostella vectensis]
Length = 196
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+ E+AARLLF WA+ + F +L DQV LLR WS++F++N Q +MP +AP+
Sbjct: 1 EKTSEMAARLLFMTAHWAKKVKHFSELSHFDQVTLLRENWSKVFIINLVQWAMPFEIAPI 60
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
++ D+V+ M + E V KL L + AE+S LKA+ LF
Sbjct: 61 VSDIVEKTPGQHLDKVLHTMGKLN---EVVFKLVQLQLSRAEFSLLKALALF 109
>gi|124431273|gb|ABN11285.1| ultraspiracle protein [Bemisia tabaci]
Length = 251
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC+ A R L+ +EWA++IP F +L V DQV LL+ W+EL + S SM +
Sbjct: 55 VSDICQAADRQLYQLIEWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRSMSVKDGI 114
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H + V A D RV E V K++ + +D E CL++IVLF
Sbjct: 115 MLATGLVVHRNCAHQAGVGAIFD--RVLTELVAKMREMKMDKTELGCLRSIVLFN 167
>gi|62738907|pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC+ A R L+ +EWA++IP F +L V DQV LL+ W+EL + S SM +
Sbjct: 66 VSDICQAADRQLYQLIEWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRSMSVKDGI 125
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H + V A D RV E V K++ + +D E CL++IVLF
Sbjct: 126 MLATGLVVHRNCAHQAGVGAIFD--RVLTELVAKMREMKMDKTELGCLRSIVLFN 178
>gi|262070635|gb|ACY08796.1| ultraspiracle, partial [Tribolium brevicornis]
Length = 284
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
IC+ + LF V+WA++IP F L ++DQV LLR W+EL + S SM A +L
Sbjct: 103 ICQATNKQLFQLVQWAKHIPHFTSLPISDQVLLLRAGWNELLIAAFSHRSMQAQDAIVL- 161
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGV 125
A GL + A V + RV E V K+K + +D E CL+AI+L+ R V
Sbjct: 162 ATGLTVNKQTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSV 221
>gi|118344438|ref|NP_001072044.1| nuclear receptor [Ciona intestinalis]
gi|70571388|dbj|BAE06736.1| nuclear receptor [Ciona intestinalis]
Length = 692
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
+CE A+RLLF + +WAR+I F L+ +LLR W ELF+L +QCS +++ ++
Sbjct: 433 VCESASRLLFLSAQWARSIFAFQLLRTECHTSLLRDCWHELFMLGLAQCSRSMNLDRIIM 492
Query: 66 A------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L + V +H+ Q+ V +L+ L VD EYS +KA+ LF+
Sbjct: 493 TIIRHLKTSLQQGKLTTSHVCHVSEHLNKLQDFVARLQKLEVDQHEYSYIKALALFS 549
>gi|118344170|ref|NP_001071910.1| nuclear receptor [Ciona intestinalis]
gi|92081500|dbj|BAE93297.1| nuclear receptor [Ciona intestinalis]
Length = 692
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 6/117 (5%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
+CE A+RLLF + +WAR+I F L+ +LLR W ELF+L +QCS +++ ++
Sbjct: 433 VCESASRLLFLSAQWARSIFAFQLLRTECHTSLLRDCWHELFMLGLAQCSRSMNLDRIIM 492
Query: 66 A------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L + V +H+ Q+ V +L+ L VD EYS +KA+ LF+
Sbjct: 493 TIIRHLKTSLQQGKLTTSHVCHVSEHLNKLQDFVARLQKLEVDQHEYSYIKALALFS 549
>gi|328696467|ref|XP_003240033.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Acyrthosiphon pisum]
Length = 459
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P ++PLL +
Sbjct: 268 ETTARLLFMAVRWVRCLAPFQTLSKHDQLLLLQESWKELFLLHLAQWSIPWDLSPLLNSE 327
Query: 68 GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
A D V + +++ QE + + + L D +E C+KA++LFT
Sbjct: 328 KARERLPADDTKVN--NEMKIIQEILARFRQLSPDGSECGCMKAVILFT 374
>gi|194905186|ref|XP_001981146.1| GG11781 [Drosophila erecta]
gi|190655784|gb|EDV53016.1| GG11781 [Drosophila erecta]
Length = 438
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 6/125 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 227 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNF 286
Query: 61 APLLAAAGLHASPMAADRVVAFMD-HIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
A LL ++ S A ++ + + FQE + +L L++DS EY CL+AI LF
Sbjct: 287 AQLLF---VYESENANREIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISLFRNS- 342
Query: 120 RIFTG 124
I TG
Sbjct: 343 -ILTG 346
>gi|105872963|gb|ABF74729.1| retinoid X receptor-like protein [Daphnia magna]
gi|131665089|dbj|BAF49028.1| ultraspiracle [Daphnia magna]
gi|321453064|gb|EFX64341.1| hypothetical protein DAPPUDRAFT_219609 [Daphnia pulex]
Length = 400
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC + LF VEWA++IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 204 LGNICAATDKQLFQLVEWAKHIPHFTELPLDDQVVLLRAGWNELLIAAFSHRSVGVKDGI 263
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H + V + D RV E V K++ + +D AE CL+AI+LF
Sbjct: 264 VLATGLVIHRNSAHQAGVGSIFD--RVLTELVSKMREMKLDLAELGCLRAIILFN 316
>gi|374711679|gb|AEZ64360.1| retinoid X receptor isoform A long [Diploptera punctata]
Length = 449
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ + LF VEWA++IP F L ++DQV LLR W+EL + S S+ +
Sbjct: 251 VTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGI 310
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+LA +H + V A D RV E V K++ + +D E CL++I+LF R
Sbjct: 311 VLATGLTVHRNSAHQAGVGAIFD--RVLTELVAKMREMKMDKTELGCLRSIILFNPDVR 367
>gi|339245569|ref|XP_003378710.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
gi|316972367|gb|EFV56045.1| photoreceptor-specific nuclear receptor [Trichinella spiralis]
Length = 547
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 68/134 (50%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
D++ E + RLL V+WA+++P F L DQV LL WS+LF+L Q SMP+ + L
Sbjct: 355 DSVYETSMRLLLMVVKWAKSLPSFMALSFRDQVILLEESWSDLFLLTLYQWSMPMGSSAL 414
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFT 123
L+ + + + +R Q+ + + ++ +D AE+ CLKAI LF R
Sbjct: 415 LSHSSFVQFAGGINSNIFRPSDLRYLQDLLARFRSCALDPAEFVCLKAIALFRPEARGLK 474
Query: 124 GVLLKALHVDSAEY 137
L D A+Y
Sbjct: 475 DPAQIELLQDQAQY 488
>gi|374711683|gb|AEZ64362.1| retinoid X receptor isoform B long [Diploptera punctata]
Length = 427
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ + LF VEWA++IP F L ++DQV LLR W+EL + S S+ +
Sbjct: 229 VTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGI 288
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+LA +H + V A D RV E V K++ + +D E CL++I+LF R
Sbjct: 289 VLATGLTVHRNSAHQAGVGAIFD--RVLTELVAKMREMKMDKTELGCLRSIILFNPDVR 345
>gi|374711681|gb|AEZ64361.1| retinoid X receptor isoform B short [Diploptera punctata]
Length = 415
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ + LF VEWA++IP F L ++DQV LLR W+EL + S S+ +
Sbjct: 217 VTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGI 276
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+LA +H + V A D RV E V K++ + +D E CL++I+LF R
Sbjct: 277 VLATGLTVHRNSAHQAGVGAIFD--RVLTELVAKMREMKMDKTELGCLRSIILFNPDVR 333
>gi|374711677|gb|AEZ64359.1| retinoid X receptor isoform A short [Diploptera punctata]
Length = 437
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ + LF VEWA++IP F L ++DQV LLR W+EL + S S+ +
Sbjct: 239 VTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGI 298
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+LA +H + V A D RV E V K++ + +D E CL++I+LF R
Sbjct: 299 VLATGLTVHRNSAHQAGVGAIFD--RVLTELVAKMREMKMDKTELGCLRSIILFNPDVR 355
>gi|314955556|gb|ADT64885.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
NIC+ + LF VEWA++IP F L + DQV LLR W+EL + S SM + +L
Sbjct: 209 NICQATNKQLFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVL 268
Query: 65 AAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
A +H + V D RV E V K++ + +D E CL++++LF
Sbjct: 269 ATGLTIHRNSAHQAGVGTIFD--RVLTELVAKMREMKMDKTELGCLRSVILFN 319
>gi|154434695|gb|ABS82445.1| nuclear receptor 7 [Pocillopora damicornis]
Length = 168
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 60/114 (52%), Gaps = 23/114 (20%)
Query: 157 LPLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSAS 211
P++QH+ L + AVQRGR+PP Q P Q +AL D A
Sbjct: 72 CPIDQHHRNQCQYCRLRKCIKVGMRREAVQRGRIPPTQVPQPSP----QHSALNGADVA- 126
Query: 212 AASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQ-PNNIMGIDNICE 264
NGHS +LS +ISLLLRAEPYPTAR+ Q + P IMGI+NICE
Sbjct: 127 -----------NGHS-FLSGFISLLLRAEPYPTARFQQGLNMPCGIMGIENICE 168
>gi|158302672|dbj|BAF85823.1| ultraspiracle [Liocheles australasiae]
Length = 410
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A L+ VEWA+++P F DL + DQ+ LL+ W+EL + S S+ +
Sbjct: 215 VANICQAADHQLYQLVEWAKHVPHFTDLPLDDQMVLLKAGWNELLIAAFSHRSIDVKDGI 274
Query: 63 LLAAAGL-HASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA+ + H + V D RV E V K++ +++D E CL+AIVLF
Sbjct: 275 VLASGLIVHRNSAHGAGVGTIFD--RVLTELVAKMREMNMDKTELGCLRAIVLFN 327
>gi|302202572|gb|ADL09403.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
NIC+ + LF VEWA++IP F L + DQV LLR W+EL + S SM + +L
Sbjct: 209 NICQATNKQLFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVL 268
Query: 65 AAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
A +H + V D RV E V K++ + +D E CL++++LF
Sbjct: 269 ATGLTIHRNSAHQAGVGTIFD--RVLTELVAKMREMKMDKTELGCLRSVILFN 319
>gi|195061143|ref|XP_001995934.1| GH14219 [Drosophila grimshawi]
gi|193891726|gb|EDV90592.1| GH14219 [Drosophila grimshawi]
Length = 445
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L SQ MP++
Sbjct: 220 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMSQYLMPMNF 279
Query: 61 APLLAAAGLHASPMAADRVVAFMD-HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL ++ + A +VA + + FQ+ + +L L++D+ EY CL+AI LF
Sbjct: 280 AQLLF---VYEAENANREIVAIVSREVHAFQDVLNQLCHLNIDTTEYECLRAISLF 332
>gi|314955486|gb|ADT64884.1| retinoid X receptor [Gryllus firmus]
Length = 403
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
NIC+ + LF VEWA++IP F L + DQV LLR W+EL + S SM + +L
Sbjct: 209 NICQATNKQLFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVL 268
Query: 65 AAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
A +H + V D RV E V K++ + +D E CL++++LF
Sbjct: 269 ATGLTIHRNSAHQAGVGTIFD--RVLTELVAKMREMKMDKTELGCLRSVILFN 319
>gi|348509457|ref|XP_003442265.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Oreochromis niloticus]
Length = 543
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP--- 62
+C++A + LF VEWARN F +L+V DQ+ LL+ WSEL VL+ C +
Sbjct: 347 MCKMADQTLFCLVEWARNSSLFKELKVEDQMVLLQSCWSELLVLDHL-CRQVTYGKEGCI 405
Query: 63 -LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ + S + + V + Q+ V KLKALH+D E+ CLK +VLF
Sbjct: 406 YLVTGQQIEVSTIISQAGVTLSSLVSRTQDLVSKLKALHLDRHEFVCLKYLVLFN 460
>gi|443702947|gb|ELU00770.1| hypothetical protein CAPTEDRAFT_224222 [Capitella teleta]
Length = 747
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 68/140 (48%), Gaps = 24/140 (17%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR I F L Q+ L+R WSELF L +QC+ +++
Sbjct: 452 LNVHYICESASRLLFLSMHWARAISAFQLLGQDTQIELVRRCWSELFTLGLAQCANVMNL 511
Query: 61 APLLAA---------------------AGLHASPMAAD---RVVAFMDHIRVFQEQVEKL 96
+ +LAA AGL S R+ D I QE + L
Sbjct: 512 STILAAILNHLQTSQQDGGQTEGSSERAGLTMSSTDKSLSPRIKMVTDTILQLQEFISTL 571
Query: 97 KALHVDSAEYSCLKAIVLFT 116
L VD E++ LKAIVLF+
Sbjct: 572 NRLQVDETEFAYLKAIVLFS 591
>gi|270002751|gb|EEZ99198.1| tailless [Tribolium castaneum]
Length = 406
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
ICE AA+LLF V+W R+IP F L ++DQ+ LL W +LFVL A+Q + + L+
Sbjct: 199 ICESAAQLLFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAAQFLPLMDFSVLVE 258
Query: 66 AAG-LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG-KRIFT 123
A G L P D AF+ + FQE ++K+ +D+ E++CL+AIVLF T ++ +
Sbjct: 259 ACGVLQQEPHRRD---AFLKEVADFQETLKKISQFQLDAHEFACLRAIVLFKTSFEKPSS 315
Query: 124 GVLLKALHVDSAEYSCLKAIVLFTTGKRMFGKPLPLNQHYTATISNVPL 172
+ +SA+ S ++ + LN+H T T PL
Sbjct: 316 SSNQEKTTTESAKISVIQD-----------DAQMRLNKHVTTTYPKQPL 353
>gi|380021453|ref|XP_003694579.1| PREDICTED: protein tailless-like [Apis florea]
Length = 400
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 9/115 (7%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
++ICE AARLLF V WAR++ +L + DQ+ LL W ELF+L A+Q L PL
Sbjct: 197 ESICEQAARLLFLNVHWARDLAIGTNLVIEDQLTLLESSWRELFLLAAAQILPSLDPTPL 256
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
L G +A + + F+E + A+ +D EY+C++AIVLF G
Sbjct: 257 L-PPGPQGLGLAVE--------VTRFRETLAGFHAMSLDQHEYACIRAIVLFKAG 302
>gi|156314209|ref|XP_001617895.1| hypothetical protein NEMVEDRAFT_v1g9482 [Nematostella vectensis]
gi|156196365|gb|EDO25795.1| predicted protein [Nematostella vectensis]
Length = 107
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 3/109 (2%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E+AARLLF WA+ + F +L DQV LLR WS++F++N Q +MP +AP+++
Sbjct: 1 EMAARLLFMTAHWAKKVKHFSELSHFDQVTLLRENWSKVFIINLVQWAMPFEIAPIVSDI 60
Query: 68 GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
D+V+ M + E V KL L + AE+S LKA+ LF
Sbjct: 61 VEKTPGQHLDKVLHTMGKL---NEVVFKLVQLQLSRAEFSLLKALALFN 106
>gi|345794757|ref|XP_544754.3| PREDICTED: photoreceptor-specific nuclear receptor [Canis lupus
familiaris]
Length = 304
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 30 LQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRVF 89
L DQV LL WSELF+L A Q S+PL PLLAA A+ + R+ R+
Sbjct: 138 LPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAAPEGPAAGSSQGRLALASAESRIL 197
Query: 90 QEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
QE + + +AL VD E++C+KA+VLFT R
Sbjct: 198 QETISRFRALAVDPTEFACMKALVLFTPETR 228
>gi|392350113|ref|XP_003750575.1| PREDICTED: photoreceptor-specific nuclear receptor-like, partial
[Rattus norvegicus]
Length = 293
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D I E +ARLLF AV+WA+N+P F +L DQV LL W+ELF+L A Q S+PL P
Sbjct: 204 LDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCP 263
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQV 93
LLA AS + R+ +R QE +
Sbjct: 264 LLAPP--EASSSSQGRLALASAEMRFLQETI 292
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
P + +D I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 198 PASPCNLDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 237
>gi|70907499|emb|CAH69897.1| retinoid X receptor [Blattella germanica]
Length = 413
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ + LF VEWA++IP F L ++DQV LLR W+EL + S S+ +
Sbjct: 216 VTNICQATNKQLFQLVEWAKHIPHFTTLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGI 275
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+LA +H + V A D RV E V K++ + +D E CL++++LF R
Sbjct: 276 VLATGLTVHRNSAHQAGVGAIFD--RVLTELVAKMREMKMDKTELGCLRSVILFNPDVR 332
>gi|195505298|ref|XP_002099444.1| GE10907 [Drosophila yakuba]
gi|194185545|gb|EDW99156.1| GE10907 [Drosophila yakuba]
Length = 452
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 227 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNF 286
Query: 61 APLLAAAGLHASPMAADRVVAFMD-HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL ++ S A ++ + + FQE + +L L++DS EY CL+AI LF
Sbjct: 287 AQLLF---VYESENANREIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISLF 339
>gi|259013275|ref|NP_001158442.1| FTZ-F1-related protein [Saccoglossus kowalevskii]
gi|197320551|gb|ACH68437.1| FTZ-F1-related protein [Saccoglossus kowalevskii]
Length = 475
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 1/110 (0%)
Query: 7 CELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAA 66
C+LA + LF+ V+WARN FF DL+V DQ+ LL+ WSEL V++ + +V ++
Sbjct: 284 CKLADQTLFAFVDWARNSMFFKDLKVEDQMKLLQNAWSELLVIDQCYRQVESNVEEMILV 343
Query: 67 AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
G +A R+ D + E ++++K L +D E+ CLK ++L
Sbjct: 344 TG-EVLDVAKLRMYGLGDIVDRMTEIIKRMKELKMDRKEFMCLKFLLLLN 392
>gi|440893234|gb|ELR46081.1| Nuclear receptor subfamily 2 group F member 6, partial [Bos
grunniens mutus]
Length = 441
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 41 LVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALH 100
L+ + + L P + P L G H MAA+R VAFMD +R FQEQV+KL L
Sbjct: 277 LLLTRISFLTLRSLQRPRQMRPAL---GGHDLEMAAERAVAFMDQVRAFQEQVDKLGRLQ 333
Query: 101 VDSAEYSCLKAIVLFT 116
VDSAEY CLKAI LFT
Sbjct: 334 VDSAEYGCLKAIALFT 349
>gi|149058494|gb|EDM09651.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_b
[Rattus norvegicus]
Length = 499
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 11/119 (9%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA---- 61
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + VA
Sbjct: 303 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILD----HIYRQVAHGKE 358
Query: 62 -PLLAAAGLHA--SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
+ G H S + ++ VAF + + + QE V +L++L D E+ CLK +VLF++
Sbjct: 359 GTIFLVTGEHVDYSSIISNTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSS 417
>gi|17864126|ref|NP_524596.1| tailless [Drosophila melanogaster]
gi|135913|sp|P18102.1|TLL_DROME RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|158604|gb|AAA28936.1| tailless (tll) protein [Drosophila melanogaster]
gi|2440022|gb|AAB71371.1| tailless protein [Drosophila melanogaster]
gi|7301986|gb|AAF57091.1| tailless [Drosophila melanogaster]
gi|66571248|gb|AAY51589.1| IP01133p [Drosophila melanogaster]
gi|220943320|gb|ACL84203.1| tll-PA [synthetic construct]
gi|220953302|gb|ACL89194.1| tll-PA [synthetic construct]
Length = 452
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 227 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNF 286
Query: 61 APLLAAAGLHASPMAADRVVAFMD-HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL ++ S A ++ + + FQE + +L L++DS EY CL+AI LF
Sbjct: 287 AQLLF---VYESENANREIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISLF 339
>gi|328782478|ref|XP_001121187.2| PREDICTED: protein tailless [Apis mellifera]
Length = 400
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 9/115 (7%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
++ICE AARLLF V WAR++ +L + DQ+ LL W ELF+L A+Q L PL
Sbjct: 197 ESICEQAARLLFLNVHWARDLAVGTNLVIEDQLTLLESSWRELFLLAAAQILPTLDPTPL 256
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
L G +A + + F+E + A+ +D EY+C++AIVLF G
Sbjct: 257 L-PPGPQGLGLAVE--------VTRFRETLAGFHAMSLDQHEYACIRAIVLFKAG 302
>gi|4107119|dbj|BAA36340.1| FTZ-F1 beta2 [Rattus norvegicus]
gi|149058495|gb|EDM09652.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_c
[Rattus norvegicus]
Length = 539
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPL-HVAPLL 64
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + +
Sbjct: 343 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIF 402
Query: 65 AAAGLHA--SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
G H S + ++ VAF + + + QE V +L++L D E+ CLK +VLF++
Sbjct: 403 LVTGEHVDYSSIISNTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSS 457
>gi|195575179|ref|XP_002105557.1| GD21550 [Drosophila simulans]
gi|194201484|gb|EDX15060.1| GD21550 [Drosophila simulans]
Length = 452
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 227 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNF 286
Query: 61 APLLAAAGLHASPMAADRVVAFMD-HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL ++ S A ++ + + FQE + +L L++DS EY CL+AI LF
Sbjct: 287 AQLLF---VYESENANREIMGMVTREVHAFQEVLNQLCHLNIDSTEYECLRAISLF 339
>gi|149058493|gb|EDM09650.1| nuclear receptor subfamily 5, group A, member 2, isoform CRA_a
[Rattus norvegicus]
Length = 293
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPL-HVAPLL 64
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + +
Sbjct: 97 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIF 156
Query: 65 AAAGLHA--SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
G H S + ++ VAF + + + QE V +L++L D E+ CLK +VLF++
Sbjct: 157 LVTGEHVDYSSIISNTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSS 211
>gi|70907501|emb|CAH69898.1| retinoid X receptor [Blattella germanica]
Length = 436
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ + LF VEWA++IP F L ++DQV LLR W+EL + S S+ +
Sbjct: 239 VTNICQATNKQLFQLVEWAKHIPHFTTLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGI 298
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+LA +H + V A D RV E V K++ + +D E CL++++LF R
Sbjct: 299 VLATGLTVHRNSAHQAGVGAIFD--RVLTELVAKMREMKMDKTELGCLRSVILFNPDVR 355
>gi|347360574|emb|CCA61270.1| retinoid X receptor, isoform M [Lithobius peregrinus]
Length = 320
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ N C+ A + L VEWA++IP F +L + DQV LLR W+EL + S S+ + +
Sbjct: 140 MTNFCQAANQQLIQLVEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSHRSVNVKDSI 199
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
+LA +H + + V D RV E V K++ + +D E CL+AI+LF K +
Sbjct: 200 VLATGLQIHRTDAHSAGVGTIFD--RVLTELVAKMREMKMDRTELGCLRAIILFNPVKGL 257
Query: 122 FTGVLLKAL 130
+ ++++L
Sbjct: 258 RSSQVIESL 266
>gi|347360576|emb|CCA61271.1| retinoid X receptor, isoform S [Lithobius peregrinus]
Length = 305
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
N C+ A + L VEWA++IP F +L + DQV LLR W+EL + S S+ + + +L
Sbjct: 127 NFCQAANQQLIQLVEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSHRSVNVKDSIVL 186
Query: 65 AAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFT 123
A +H + + V D RV E V K++ + +D E CL+AI+LF K + +
Sbjct: 187 ATGLQIHRTDAHSAGVGTIFD--RVLTELVAKMREMKMDRTELGCLRAIILFNPVKGLRS 244
Query: 124 GVLLKAL 130
++++L
Sbjct: 245 SQVIESL 251
>gi|440892538|gb|ELR45692.1| Nuclear receptor subfamily 2 group C member 1 [Bos grunniens mutus]
Length = 618
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 16/132 (12%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 393 LNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 452
Query: 61 APLLAA--AGLHAS--------------PMAADRVVAFMDHIRVFQEQVEKLKALHVDSA 104
A +LA LH+S ++A+R M+HI QE + L +D
Sbjct: 453 ATILATFVNCLHSSLQQEDFVCLFLIKDKISAERRKLLMEHIFKLQEFCNSMVKLCIDGY 512
Query: 105 EYSCLKAIVLFT 116
EY+ LKAIVLF+
Sbjct: 513 EYAYLKAIVLFS 524
>gi|343958546|dbj|BAK63128.1| orphan nuclear receptor TR2 [Pan troglodytes]
Length = 604
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E ++RLLF ++ WA +IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 389 LNVHYIGESSSRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNV 448
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA L M+ +R M+ I QE + L +D EY+ LKAIVL
Sbjct: 449 ATILATFVNCLHNSLQQDKMSTERRKLLMERIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 508
Query: 115 FT 116
F+
Sbjct: 509 FS 510
>gi|158429174|pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429176|pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429178|pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
gi|158429180|pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
IC+ + LF V+WA+ +P F L +TDQV LLR W+EL + S SM A +L
Sbjct: 42 ICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVL- 100
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
A GL + A V + RV E V K+K + +D E CL+AI+L+ R
Sbjct: 101 ATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVR 155
>gi|347360572|emb|CCA61269.1| retinoid X receptor, isoform L [Lithobius peregrinus]
Length = 326
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ N C+ A + L VEWA++IP F +L + DQV LLR W+EL + S S+ + +
Sbjct: 146 MTNFCQAANQQLIQLVEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSHRSVNVKDSI 205
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
+LA +H + + V D RV E V K++ + +D E CL+AI+LF K +
Sbjct: 206 VLATGLQIHRTDAHSAGVGTIFD--RVLTELVAKMREMKMDRTELGCLRAIILFNPVKGL 263
Query: 122 FTGVLLKAL 130
+ ++++L
Sbjct: 264 RSSQVIESL 272
>gi|314955738|gb|ADT64886.1| retinoid X receptor [Gryllus firmus]
Length = 358
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
NIC+ + LF VEWA++IP F L + DQV LLR W+EL + S SM + +L
Sbjct: 164 NICQATNKQLFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSMEVKDGIVL 223
Query: 65 AAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
A +H + V D RV E V K++ + +D E CL++++LF
Sbjct: 224 ATGLTIHRNSAHQAGVGTIFD--RVLTELVAKMREMKMDKTELGCLRSVILFN 274
>gi|13492975|ref|NP_068510.1| nuclear receptor subfamily 5 group A member 2 [Rattus norvegicus]
gi|81907060|sp|Q9QWM1.1|NR5A2_RAT RecName: Full=Nuclear receptor subfamily 5 group A member 2;
AltName: Full=FTZ-F1 beta; AltName: Full=Liver receptor
homolog 1; Short=LRH-1
gi|4107117|dbj|BAA36339.1| FTZ-F1 beta1 [Rattus norvegicus]
Length = 560
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPL-HVAPLL 64
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + +
Sbjct: 364 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIF 423
Query: 65 AAAGLHA--SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
G H S + ++ VAF + + + QE V +L++L D E+ CLK +VLF++
Sbjct: 424 LVTGEHVDYSSIISNTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSS 478
>gi|3929579|gb|AAC80008.1| retinoic acid X receptor [Tripedalia cystophora]
Length = 435
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 5/125 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
I ++C A + L S EWA+ +P F DL + DQV LL+ W EL + S +
Sbjct: 240 IRHVCLAADKQLASLAEWAKRLPHFRDLSIADQVVLLQWSWPELLIGGFCHRSCAVKDGI 299
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL + GLH + + V A +D ++F E +EK++ + +D AE+ CL+AI+LF+ +
Sbjct: 300 LL-STGLHLTRDNLKKAGVGAIID--KIFSEVIEKMQEIQMDRAEWGCLRAIMLFSPDAK 356
Query: 121 IFTGV 125
T +
Sbjct: 357 GLTAI 361
>gi|86515358|ref|NP_001034502.1| tailless [Tribolium castaneum]
gi|8096685|gb|AAF71999.1|AF219117_1 tailless ortholog [Tribolium castaneum]
Length = 406
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 16/169 (9%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
ICE AA+L+F V+W R+IP F L ++DQ+ LL W +LFVL A+Q + + L+
Sbjct: 199 ICESAAQLIFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAAQFLPLMDFSVLVE 258
Query: 66 AAG-LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG-KRIFT 123
A G L P D AF+ + FQE ++K+ +D+ E++CL+AIVLF T ++ +
Sbjct: 259 ACGVLQQEPHRRD---AFLKEVADFQETLKKISQFQLDAHEFACLRAIVLFKTSFEKPSS 315
Query: 124 GVLLKALHVDSAEYSCLKAIVLFTTGKRMFGKPLPLNQHYTATISNVPL 172
+ +SA+ S ++ + LN+H T T PL
Sbjct: 316 SSNQEKTTTESAKISVIQD-----------DAQMRLNKHVTTTYPKQPL 353
>gi|195390875|ref|XP_002054093.1| tailless [Drosophila virilis]
gi|194152179|gb|EDW67613.1| tailless [Drosophila virilis]
Length = 450
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 225 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNF 284
Query: 61 APLLAAAGLHASPMAADRVVAFM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL ++ S A +V + + FQ+ + +L L++DS EY CL+AI LF
Sbjct: 285 AQLLF---VYESENANREIVTIVAREVHAFQDVLNQLCHLNIDSTEYECLRAISLF 337
>gi|118343980|ref|NP_001071809.1| nuclear receptor [Ciona intestinalis]
gi|70571095|dbj|BAE06678.1| nuclear receptor [Ciona intestinalis]
Length = 507
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++C+ A LF+ VEWA+ +P F L + DQV LLR W+EL + + S S+ + +L
Sbjct: 290 SVCKAADHQLFTLVEWAKRVPMFGTLPLDDQVTLLRAGWNELLIASFSHRSIEIPDGIIL 349
Query: 65 AAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
A+GL +A V A D RV E + K++ + +D E CL+AIVLF +
Sbjct: 350 -ASGLRVYRQSAHSAGVGAIFD--RVLTELIAKMRDMSMDRTELGCLRAIVLFNPDAKDL 406
Query: 123 T 123
T
Sbjct: 407 T 407
>gi|28628006|gb|AAO18151.1| USP-RXR [Lithobius forficatus]
Length = 305
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 3/127 (2%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
N C+ A + L VEWA++IP F +L + DQV LLR W+EL + S S+ + + +L
Sbjct: 128 NFCQAANQQLIQLVEWAKHIPHFTELPIEDQVTLLRAGWNELLIAAFSHRSVNVKDSIVL 187
Query: 65 AAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFT 123
A +H + + V D RV E V K++ + +D E CL+AI+LF K + +
Sbjct: 188 ATGLQIHRTDAHSAGVGTIFD--RVLTELVAKMREMKMDRTELGCLRAIILFNPVKGLRS 245
Query: 124 GVLLKAL 130
++++L
Sbjct: 246 SQVIESL 252
>gi|195113207|ref|XP_002001159.1| GI22125 [Drosophila mojavensis]
gi|193917753|gb|EDW16620.1| GI22125 [Drosophila mojavensis]
Length = 450
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 225 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNF 284
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL S VVA + FQ+ + +L L++DS EY CL+AI LF
Sbjct: 285 AQLLFVYESENSNRDIVSVVA--REVHAFQDVLNQLCHLNIDSTEYECLRAISLF 337
>gi|28628010|gb|AAO18153.1| USP-RXR [Leptopilina heterotoma]
Length = 283
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC + L+ VEWA++IP F L + DQV LLR W+EL + S S+ +
Sbjct: 103 VSNICNATNKQLYQLVEWAKHIPHFTSLPIEDQVRLLRAGWNELLIAAFSHRSIDVKDGI 162
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L AAG+ +A + + RV E V K++ + +D E CL+ I+LF
Sbjct: 163 VL-AAGITVYRNSAQQAGVGLIFERVLSELVSKMREMKMDKTELGCLRTIILFN 215
>gi|57231804|gb|AAW47615.1| tailless [Drosophila virilis]
gi|57231808|gb|AAW47617.1| tailless [Drosophila americana]
gi|57231812|gb|AAW47619.1| tailless [Drosophila americana]
gi|57231814|gb|AAW47620.1| tailless [Drosophila americana]
gi|57231816|gb|AAW47621.1| tailless [Drosophila americana]
gi|57231818|gb|AAW47622.1| tailless [Drosophila americana]
gi|57231820|gb|AAW47623.1| tailless [Drosophila americana]
Length = 389
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 218 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNF 277
Query: 61 APLLAAAGLHASPMAADRVVAFM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL ++ S A +V + + FQ+ + +L L++DS EY CL+AI LF
Sbjct: 278 AQLLF---VYESENANREIVTIVAREVHAFQDVLNQLCHLNIDSTEYECLRAISLF 330
>gi|57231806|gb|AAW47616.1| tailless [Drosophila americana]
Length = 389
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 218 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNF 277
Query: 61 APLLAAAGLHASPMAADRVVAFM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL ++ S A +V + + FQ+ + +L L++DS EY CL+AI LF
Sbjct: 278 AQLLF---VYESENANREIVTIVAREVHAFQDVLNQLCHLNIDSTEYECLRAISLF 330
>gi|156536461|gb|ABU80385.1| tailless, partial [Drosophila littoralis]
Length = 389
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 218 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNF 277
Query: 61 APLLAAAGLHASPMAADRVVAFM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL ++ S A +V + + FQ+ + +L L++DS EY CL+AI LF
Sbjct: 278 AQLLF---VYESENANREIVTIVAREVHAFQDVLNQLCHLNIDSTEYECLRAISLF 330
>gi|57231810|gb|AAW47618.1| tailless [Drosophila americana]
Length = 389
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 218 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNF 277
Query: 61 APLLAAAGLHASPMAADRVVAFM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL ++ S A +V + + FQ+ + +L L++DS EY CL+AI LF
Sbjct: 278 AQLLF---VYESENANREIVTIVAREVHAFQDVLNQLCHLNIDSTEYECLRAISLF 330
>gi|156536463|gb|ABU80386.1| tailless, partial [Drosophila montana]
Length = 389
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 218 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNF 277
Query: 61 APLLAAAGLHASPMAADRVVAFM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL ++ S A +V + + FQ+ + +L L++DS EY CL+AI LF
Sbjct: 278 AQLLF---VYESENANREIVTIVAREVHAFQDVLNQLCHLNIDSTEYECLRAISLF 330
>gi|57231822|gb|AAW47624.1| tailless [Drosophila ezoana]
Length = 389
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 218 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNF 277
Query: 61 APLLAAAGLHASPMAADRVVAFM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL ++ S A +V + + FQ+ + +L L++DS EY CL+AI LF
Sbjct: 278 AQLLF---VYESENANREIVTIVAREVHAFQDVLNQLCHLNIDSTEYECLRAISLF 330
>gi|158962474|dbj|BAF91724.1| retinoid X receptor [Ornithodoros moubata]
Length = 453
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 67/122 (54%), Gaps = 9/122 (7%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L VEWA++IP F +L + D++ LL+ W+EL + S SM +
Sbjct: 257 VTNICQAADRQLHQLVEWAKHIPHFTELPLEDRMVLLKAGWNELLIAAFSHRSMXVKDGI 316
Query: 63 LLAAAGL----HASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
+L A GL H++ A V A D RV E V K++ L +D E CL+AIVLF
Sbjct: 317 VL-ATGLVVQRHSAHSAG--VGAIFD--RVLTELVAKMRELRMDRTELGCLRAIVLFNPE 371
Query: 119 KR 120
R
Sbjct: 372 AR 373
>gi|321461128|gb|EFX72163.1| hypothetical protein DAPPUDRAFT_59378 [Daphnia pulex]
Length = 384
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
I+++CE + L VEWA+ IP F +L + DQVALLR +E VL ++ SM L
Sbjct: 185 INDVCESMKQQLLFLVEWAKYIPVFSELPLDDQVALLRAHAAENLVLGVARRSMHLRDIL 244
Query: 63 LLAAAGLHASPMAA-DRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL + A + + IR+ E V+ L+ + +D EY+CLKAIV F
Sbjct: 245 LLGNDSIMPRQSAGLGEIEIYHIGIRIMDEIVKPLRDIQMDDTEYTCLKAIVFF 298
>gi|73909187|gb|AAI03687.1| Nr2c2 protein [Mus musculus]
Length = 501
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYS 107
+ +LAA + ++ DR+ M+HI QE + L +D E S
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYESS 493
>gi|124001371|emb|CAF21859.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta japonica]
Length = 279
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ + LF VEWA++IP F L ++DQV LLR W+EL + S S+ +
Sbjct: 130 VTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGI 189
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+LA +H + V D RV E V K++ + +D E CL++++LF
Sbjct: 190 VLATGLTVHRNSAHQAGVGTIFD--RVLTELVAKMREMKMDKTELGCLRSVILF 241
>gi|148707596|gb|EDL39543.1| nuclear receptor subfamily 5, group A, member 2 [Mus musculus]
Length = 451
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA---- 61
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + VA
Sbjct: 255 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILD----HIYRQVAHGKE 310
Query: 62 -PLLAAAGLHA--SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
+ G H S + + VAF + + + QE V +L++L D E+ CLK +VLF++
Sbjct: 311 GTIFLVTGEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSS 369
>gi|270008322|gb|EFA04770.1| hypothetical protein TcasGA2_TC030676 [Tribolium castaneum]
Length = 357
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 20/117 (17%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+N+ E AA+LLF A++WA++IP F L DQ LL WSELFVL A+Q + P+
Sbjct: 185 ENVYESAAKLLFLAIKWAKSIPSFLQLSYRDQSILLEESWSELFVLTAAQWAFPVD---- 240
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ R +E + +L L VD E++CLKA+VLF + R
Sbjct: 241 ----------------ETLEEDARRLREIITRLTLLRVDHTEHACLKALVLFKSECR 281
>gi|449082859|dbj|BAM83566.1| ultraspiracle, partial [Periplaneta americana]
Length = 414
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ + LF VEWA++IP F L ++DQV LLR W+EL + S S+ +
Sbjct: 226 VTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGI 285
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GL +A + RV E V K++ + +D E CL++++LF
Sbjct: 286 VL-ATGLTVHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELVCLRSVILFN 338
>gi|432869184|ref|XP_004071664.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 [Oryzias
latipes]
Length = 536
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP--- 62
+C++A + LF VEWARN F +L+V DQ+ LL+ WSEL VL+ C +
Sbjct: 340 MCKIADQTLFGLVEWARNTDLFKELKVEDQMVLLQSCWSELLVLD-HLCRQVTYGKESCV 398
Query: 63 -LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ + S + + V + Q+ V KLKAL +D E+ CLK +VLF
Sbjct: 399 YLVTGQQIEVSTIVSQAGVTLSSLVSRAQDLVAKLKALQLDKQEFVCLKYLVLFN 453
>gi|198475944|ref|XP_001357213.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
gi|198137475|gb|EAL34282.2| GA21482 [Drosophila pseudoobscura pseudoobscura]
Length = 691
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W + + F L DQ LL+ W ELF+LN +Q ++PL + P+L
Sbjct: 497 ETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL--- 553
Query: 68 GLHASPMAADRVV---AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
SP+ +RV+ A ++ QE + + + + D +E C+KAI LF
Sbjct: 554 ---ESPLIKERVLQDEATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALF 601
>gi|195434755|ref|XP_002065368.1| GK14705 [Drosophila willistoni]
gi|194161453|gb|EDW76354.1| GK14705 [Drosophila willistoni]
Length = 730
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W + + F L DQ LL+ W ELF+LN +Q ++PL + P+L
Sbjct: 538 ETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL--- 594
Query: 68 GLHASPMAADRVV---AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
SP+ +RV+ A ++ QE + + + + D +E C+KAI LF
Sbjct: 595 ---ESPLIKERVLQDEATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALF 642
>gi|194765110|ref|XP_001964670.1| GF22927 [Drosophila ananassae]
gi|190614942|gb|EDV30466.1| GF22927 [Drosophila ananassae]
Length = 456
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 65/116 (56%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 231 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLMLLEESWKEFFILAMAQYLMPMNF 290
Query: 61 APLLAAAGLHASPMAADRVVAFMD-HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL ++ S A ++ + + FQ+ + +L L++DS EY CL+AI LF
Sbjct: 291 AQLLF---VYESENANREIMGMVTREVHAFQDVLNQLCHLNIDSTEYECLRAISLF 343
>gi|4160012|gb|AAD05225.1| dissatisfaction [Drosophila melanogaster]
Length = 693
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W + + F L DQ LL+ W ELF+LN +Q ++PL + P+L
Sbjct: 501 ETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL--- 557
Query: 68 GLHASPMAADRVV---AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
SP+ +RV+ A ++ QE + + + + D +E C+KAI LF
Sbjct: 558 ---ESPLIRERVLQDEATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALF 605
>gi|225581113|gb|ACN94685.1| GA21482 [Drosophila miranda]
Length = 690
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W + + F L DQ LL+ W ELF+LN +Q ++PL + P+L
Sbjct: 496 ETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL--- 552
Query: 68 GLHASPMAADRVV---AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
SP+ +RV+ A ++ QE + + + + D +E C+KAI LF
Sbjct: 553 ---ESPLIKERVLQDEATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALF 600
>gi|229335598|ref|NP_001153241.1| nuclear receptor subfamily 5 group A member 2 isoform 2 [Mus
musculus]
gi|74100341|gb|AAZ99450.1| liver receptor-like protein 1 variant 2 [Mus musculus]
Length = 499
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 11/119 (9%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA---- 61
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + VA
Sbjct: 303 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILD----HIYRQVAHGKE 358
Query: 62 -PLLAAAGLHA--SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
+ G H S + + VAF + + + QE V +L++L D E+ CLK +VLF++
Sbjct: 359 GTIFLVTGEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSS 417
>gi|17137164|ref|NP_477140.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|442626233|ref|NP_001260109.1| dissatisfaction, isoform B [Drosophila melanogaster]
gi|7297033|gb|AAF52303.1| dissatisfaction, isoform A [Drosophila melanogaster]
gi|440213405|gb|AGB92645.1| dissatisfaction, isoform B [Drosophila melanogaster]
Length = 691
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W + + F L DQ LL+ W ELF+LN +Q ++PL + P+L
Sbjct: 499 ETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL--- 555
Query: 68 GLHASPMAADRVV---AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
SP+ +RV+ A ++ QE + + + + D +E C+KAI LF
Sbjct: 556 ---ESPLIRERVLQDEATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALF 603
>gi|124001363|emb|CAF21855.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta americana]
gi|124001365|emb|CAF21856.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta australasiae]
gi|124001367|emb|CAF21857.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta brunnea]
gi|124001369|emb|CAF21858.1| ultraspiracle protein homolog of mammalian RXR, partial
[Periplaneta fuliginosa]
gi|124001373|emb|CAF21860.1| ultraspiracle protein homolog of mammalian RXR, partial [Blatta
orientalis]
Length = 279
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ + LF VEWA++IP F L ++DQV LLR W+EL + S S+ +
Sbjct: 130 VTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGI 189
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H + V D RV E V K++ + +D E CL++++LF
Sbjct: 190 VLATGLTVHRNSAHQAGVGTIFD--RVLTELVAKMREMKMDKTELGCLRSVILFN 242
>gi|60892853|gb|AAX37291.1| nuclear receptor usp/RXR [Xenos pecki]
Length = 405
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 5/118 (4%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
+ N C+ LF ++WA++IP+F L V DQV LL+ W+EL + N S S+ A
Sbjct: 208 SVSNFCQATNTQLFQIIDWAKHIPYFTSLPVADQVVLLKASWNELLITNFSYRSIDARDA 267
Query: 62 PLLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
+L A G + +A + + A D RV E V K++ + +D E CLK I LF +
Sbjct: 268 IVL-ATGYAVNKNSAHQAGLEAIFD--RVLTEVVYKMREIRMDKTEIGCLKCITLFNS 322
>gi|195473765|ref|XP_002089163.1| GE25723 [Drosophila yakuba]
gi|194175264|gb|EDW88875.1| GE25723 [Drosophila yakuba]
Length = 691
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W + + F L DQ LL+ W ELF+LN +Q ++PL + P+L
Sbjct: 499 ETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL--- 555
Query: 68 GLHASPMAADRVV---AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
SP+ +RV+ A ++ QE + + + + D +E C+KAI LF
Sbjct: 556 ---ESPLIRERVLQDEATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALF 603
>gi|283488474|gb|ADB24760.1| retinoid x receptor [Agelena silvatica]
Length = 406
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC++A + L+ VEWA++IP F DL + D+ LL+ W+EL + + S+ +
Sbjct: 210 VTNICQVADQQLYQLVEWAKHIPHFNDLPLEDRTILLKSGWNELLIASFCHKSVSVKDGI 269
Query: 63 LLAAAGL-HASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA+ + H + V D R+ E V K++ + +D E CLKAI+LF
Sbjct: 270 VLASGTIVHRNSAHNAGVGTIFD--RLLSELVNKMREMKMDKTELGCLKAIILFN 322
>gi|449082861|dbj|BAM83567.1| ultraspiracle long isoform [Periplaneta americana]
Length = 441
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ + LF VEWA++IP F L ++DQV LLR W+EL + S S+ +
Sbjct: 241 VTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGI 300
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GL +A + RV E V K++ + +D E CL++++LF
Sbjct: 301 VL-ATGLTVHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELVCLRSVILFN 353
>gi|262070639|gb|ACY08798.1| ultraspiracle, partial [Tribolium madens]
Length = 284
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
IC+ + LF V+WA+ IP F L ++DQV LLR W+EL + S SM A +L
Sbjct: 103 ICQATNKQLFQLVQWAKLIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSMQAQDAIVL- 161
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGV 125
A GL + A V + RV E V K+K + +D E CL+AI+L+ R V
Sbjct: 162 ATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSV 221
>gi|14010847|ref|NP_109601.1| nuclear receptor subfamily 5 group A member 2 isoform 1 [Mus
musculus]
gi|7676159|sp|P45448.3|NR5A2_MOUSE RecName: Full=Nuclear receptor subfamily 5 group A member 2;
AltName: Full=Liver receptor homolog 1; Short=LRH-1
gi|198875|gb|AAA39447.1| liver receptor homologue [Mus musculus]
gi|223460988|gb|AAI37846.1| Nuclear receptor subfamily 5, group A, member 2 [Mus musculus]
Length = 560
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPL-HVAPLL 64
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + +
Sbjct: 364 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIF 423
Query: 65 AAAGLHA--SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
G H S + + VAF + + + QE V +L++L D E+ CLK +VLF++
Sbjct: 424 LVTGEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSS 478
>gi|410130138|dbj|BAM63276.2| retinoid X receptor [Periplaneta americana]
Length = 416
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ + LF VEWA++IP F L ++DQV LLR W+EL + S S+ +
Sbjct: 216 VTNICQATNKQLFQLVEWAKHIPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSVEVKDGI 275
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GL +A + RV E V K++ + +D E CL++++LF
Sbjct: 276 VL-ATGLTVHRNSAHQAGVGTIFDRVLTELVAKMREMKMDKTELVCLRSVILFN 328
>gi|449672836|ref|XP_002165675.2| PREDICTED: retinoic acid receptor RXR-like [Hydra magnipapillata]
Length = 502
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
I ++C+ + L S EWAR +P F DL +TDQ+ +L+ WSEL + + C L
Sbjct: 310 IHHLCQSIDKQLVSLAEWARRLPCFEDLNITDQIKVLQSNWSELLI--GALCFRSLTSNG 367
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ GL+ + R F + ++++K L VD E+ CL+A++LF
Sbjct: 368 LMLETGLYVPRGSIQDNSIETTLTRTFDKVLDRMKDLQVDMTEWGCLRAVILFN 421
>gi|194856940|ref|XP_001968860.1| GG25103 [Drosophila erecta]
gi|190660727|gb|EDV57919.1| GG25103 [Drosophila erecta]
Length = 693
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W + + F L DQ LL+ W ELF+LN +Q ++PL + P+L
Sbjct: 501 ETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL--- 557
Query: 68 GLHASPMAADRVV---AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
SP+ +RV+ A ++ QE + + + + D +E C+KAI LF
Sbjct: 558 ---ESPLIRERVLQDEATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALF 605
>gi|146332014|gb|ABQ22513.1| retinoic acid receptor RXR-alpha-like protein [Callithrix jacchus]
Length = 187
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 14 LFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASP 73
LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ + LL A GLH
Sbjct: 1 LFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILL-ATGLHVHR 59
Query: 74 MAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 60 NSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 102
>gi|18157523|dbj|BAB83838.1| RXRB [Oryzias latipes]
Length = 427
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 15/126 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NI + A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 220 VTNISQAADKQLFTLVEWAKRIPHFSELPLDDQVILLR--WNELLIASFSHRSISVKDGI 277
Query: 63 LLAAAGLHASPMAADR--VVAFMDHI----------RVFQEQVEKLKALHVDSAEYSCLK 110
LL A GLH +A V A D RV E V K++ + +D E CL+
Sbjct: 278 LL-ATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFERVLTELVSKMRDMQMDKTELGCLR 336
Query: 111 AIVLFT 116
AI+LF
Sbjct: 337 AIILFN 342
>gi|33358129|pdb|1PK5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
gi|33358130|pdb|1PK5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
gi|218766891|pdb|3F5C|A Chain A, Structure Of Dax-1:lrh-1 Complex
Length = 248
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA---- 61
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + VA
Sbjct: 52 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILD----HIYRQVAHGKE 107
Query: 62 -PLLAAAGLHA--SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
+ G H S + + VAF + + + QE V +L++L D E+ CLK +VLF++
Sbjct: 108 GTIFLVTGEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSD 167
>gi|242024443|ref|XP_002432637.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
gi|212518107|gb|EEB19899.1| Orphan nuclear receptor NR6A1, putative [Pediculus humanus
corporis]
Length = 438
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF+AV W R++ F L DQ+ LL+ W ELF+L +Q S+P + LL ++
Sbjct: 252 ETTARLLFTAVRWVRSLGPFQTLSRHDQLLLLQESWKELFLLYLAQWSIPWDLTTLLNSS 311
Query: 68 GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+ D + A + I+ QE + + + L D +E C+KA++LFT
Sbjct: 312 KARDR-LPQDEITA--NEIKTIQELIGRFRQLSPDLSECGCMKAVILFT 357
>gi|73535941|pdb|1ZH7|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
gi|73535942|pdb|1ZH7|B Chain B, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
Length = 243
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA---- 61
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + VA
Sbjct: 47 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILD----HIYRQVAHGKE 102
Query: 62 -PLLAAAGLHA--SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
+ G H S + + VAF + + + QE V +L++L D E+ CLK +VLF++
Sbjct: 103 GTIFLVTGEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSD 162
>gi|194760978|ref|XP_001962709.1| GF15588 [Drosophila ananassae]
gi|190616406|gb|EDV31930.1| GF15588 [Drosophila ananassae]
Length = 702
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W + + F L DQ LL+ W ELF+LN +Q ++PL + P+L
Sbjct: 509 ETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL--- 565
Query: 68 GLHASPMAADRVV---AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
SP+ +RV+ A ++ QE + + + + D +E C+KAI LF
Sbjct: 566 ---ESPLIRERVLQDEATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALF 613
>gi|33943178|gb|AAQ55293.1| nuclear receptor RXR-l [Locusta migratoria]
Length = 411
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
NIC+ + LF VEWA++IP F L + DQV LLR W+EL + S S+ + +L
Sbjct: 217 NICQATNKQLFQLVEWAKHIPHFTSLPLEDQVLLLRAGWNELLIAAFSHRSVDVKDGIVL 276
Query: 65 AAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
A +H + V D RV E V K++ + +D E CL++++LF
Sbjct: 277 ATGLTVHRNSAHQAGVGTIFD--RVLTELVAKMREMKMDKTELGCLRSVILFN 327
>gi|34484276|gb|AAQ72771.1| FTZ-F1 [Epinephelus coioides]
Length = 468
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLN-ASQCSMPLHVAPLL 64
+C +A ++LFS VEWAR FF L++ DQV LL WSEL +L+ S+ + LL
Sbjct: 270 MCLMADQMLFSIVEWARTSVFFKQLKLNDQVKLLHSCWSELLLLDIISRQVLCGKEGSLL 329
Query: 65 AAAG--LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
G + S MA+ + ++ QE VEKL L VD E++C+K ++LF
Sbjct: 330 PFTGQEMDLSDMASHAGLTLASLVQRGQELVEKLHILKVDRQEFACIKFLILFN 383
>gi|195146576|ref|XP_002014260.1| GL19043 [Drosophila persimilis]
gi|194106213|gb|EDW28256.1| GL19043 [Drosophila persimilis]
Length = 819
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W + + F L DQ LL+ W ELF+LN +Q ++PL + P+L
Sbjct: 625 ETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL--- 681
Query: 68 GLHASPMAADRVV---AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
SP+ +RV+ A ++ QE + + + + D +E C+KAI LF
Sbjct: 682 ---ESPLIKERVLQDEATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALF 729
>gi|355778151|gb|EHH63187.1| hypothetical protein EGM_16101, partial [Macaca fascicularis]
Length = 302
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 52/91 (57%)
Query: 30 LQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRVF 89
L+ DQV LL WSELF+L A Q S+PL PLLA A+ A R+ RV
Sbjct: 136 LEPEDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMETRVL 195
Query: 90 QEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+E + + +AL VD E++C+KA+VLF R
Sbjct: 196 RETISRFRALAVDPTEFACMKALVLFKPETR 226
>gi|241623522|ref|XP_002409132.1| developmental orphan receptor, putative [Ixodes scapularis]
gi|215503123|gb|EEC12617.1| developmental orphan receptor, putative [Ixodes scapularis]
Length = 431
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + +CE A+RLLF ++ WAR++P F +L ++ Q+ L+R WSELF L +QC+ L +
Sbjct: 215 LNVHYVCESASRLLFRSLHWARSLPAFEELPMSLQLTLVRSAWSELFTLGLAQCAEQLSL 274
Query: 61 APLLAAAGLH---ASPMAADRVVA----FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
LL+A H ASP + +H+ Q V L+ L +D EY+ L+ +V
Sbjct: 275 PALLSALASHLRTASPKNGGSGTSQRGLVAEHVATLQRLVGALQRLRLDDREYALLRVMV 334
Query: 114 LF 115
LF
Sbjct: 335 LF 336
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
P + + +CE A+RLLF ++ WAR++P F +L
Sbjct: 211 PGGALNVHYVCESASRLLFRSLHWARSLPAFEEL 244
>gi|242008309|ref|XP_002424949.1| retinoid X receptor, putative [Pediculus humanus corporis]
gi|212508563|gb|EEB12211.1| retinoid X receptor, putative [Pediculus humanus corporis]
Length = 420
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ L+ VEWA++IP F L + DQV LLR W+EL + S S+ +
Sbjct: 224 VANICQATNTQLYQLVEWAKHIPHFSSLPIEDQVLLLRAGWNELLIAAFSHRSVEVRDGI 283
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A +H + V D RV E V K++ +++D E CL++I+LF
Sbjct: 284 VLGAGITVHRNSAHQAGVGTIFD--RVLTELVAKMRDMNMDRTELGCLRSIILFN 336
>gi|407186432|gb|AFT63499.1| ultraspiracle [Bradysia coprophila]
Length = 447
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 24/160 (15%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA- 61
+ ++C++ + L+ +E+AR +P+F LQ DQV LLR W+EL + + S+ A
Sbjct: 247 VSHLCQMVNKQLYQLIEYARRMPYFDRLQREDQVTLLRAGWNELLIATVAWRSIEYLDAE 306
Query: 62 ----------------PLLAAAG----LHASPMAADRVVAFMDHIRVFQEQVEKLKALHV 101
P L G LH + VVA D R+ E K+K L++
Sbjct: 307 RTNPDGSIDRRAPVRPPQLMCLGPNFTLHRNSAQQAGVVAIFD--RILSELSVKMKRLNI 364
Query: 102 DSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAE-YSCL 140
D +E +CLKAI+LF + R T + +++ + YSCL
Sbjct: 365 DKSELTCLKAIILFNSDIRGLTVRGKEDVNMCREKIYSCL 404
>gi|293349263|ref|XP_002727107.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Rattus
norvegicus]
Length = 397
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 44/63 (69%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D I E +ARLLF AV+WA+N+P F +L DQV LL W+ELF+L A Q S+PL P
Sbjct: 204 LDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCP 263
Query: 63 LLA 65
LLA
Sbjct: 264 LLA 266
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
P + +D I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 198 PASPCNLDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 237
>gi|195385346|ref|XP_002051367.1| GJ15408 [Drosophila virilis]
gi|194147824|gb|EDW63522.1| GJ15408 [Drosophila virilis]
Length = 726
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W + + F L DQ LL+ W ELF+LN +Q ++PL + P+L
Sbjct: 534 ETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL--- 590
Query: 68 GLHASPMAADRVV---AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
SP+ +RV+ A ++ QE + + + + D +E C+KAI LF
Sbjct: 591 ---ESPLIKERVLQDEATQMEMKTIQEILCRFRQITPDGSEVGCMKAIALF 638
>gi|332221160|ref|XP_003259729.1| PREDICTED: nuclear receptor subfamily 2 group C member 1 [Nomascus
leucogenys]
Length = 604
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + I E A+RLLF ++ WA P + + + ++L++ W+ELF L +QC ++V
Sbjct: 389 LNVHYIGESASRLLFLSMHWALCHPSWSAVAQENSISLVKAYWNELFTLGLAQCWQVMNV 448
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
A +LA + L M+ +R M+HI QE + L +D EY+ LKAIVL
Sbjct: 449 ATILATFVNCLHSSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVL 508
Query: 115 FT 116
F+
Sbjct: 509 FS 510
>gi|262070637|gb|ACY08797.1| ultraspiracle, partial [Tribolium freemani]
Length = 284
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
IC+ + LF V+WA+ +P F L ++DQV LLR W+EL + S SM A +L
Sbjct: 103 ICQATHKQLFQLVQWAKLVPHFTSLPLSDQVLLLRAGWNELLIAAFSHRSMQAQDAIVL- 161
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGV 125
A GL + A V + RV E V K+K + +D E CL+AI+L+ R V
Sbjct: 162 ATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSV 221
>gi|327269705|ref|XP_003219633.1| PREDICTED: hepatocyte nuclear factor 4-gamma-like [Anolis
carolinensis]
Length = 456
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
GI +ICE + L VEWA+ IP F DL++ DQVALLR E +L A++ SM
Sbjct: 185 GISDICESMKQQLLVLVEWAKYIPAFCDLRLDDQVALLRAHAGEHLLLGAAKRSMVYKDI 244
Query: 62 PLLAAAGL---HASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL + ++S + RV R+ E + + + +D EY+CLKAIV F
Sbjct: 245 ILLGNDFIIHRNSSEIEISRVAN-----RILDEIIHPFQEIQIDDNEYACLKAIVFF 296
>gi|195115900|ref|XP_002002494.1| GI12430 [Drosophila mojavensis]
gi|193913069|gb|EDW11936.1| GI12430 [Drosophila mojavensis]
Length = 715
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
I+++CE + L + VEWA+ IP F DLQ+ DQVALLR E +L S+ SM L
Sbjct: 304 INDVCESMKQQLLTLVEWAKQIPAFNDLQLDDQVALLRAHAGEHLLLGLSRRSMHLKDVL 363
Query: 63 LLAAAGL--------HASP-MAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
LL+ + H SP + R+ A R+ E V +K + +D E++C+KA+V
Sbjct: 364 LLSNNCVITRHCPDPHVSPNLDISRIGA-----RIIDELVVVMKDVGIDDTEFACIKALV 418
Query: 114 LF 115
F
Sbjct: 419 FF 420
>gi|195116317|ref|XP_002002702.1| GI17531 [Drosophila mojavensis]
gi|193913277|gb|EDW12144.1| GI17531 [Drosophila mojavensis]
Length = 736
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W + + F L DQ LL+ W ELF+LN +Q ++PL + P+L
Sbjct: 544 ETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL--- 600
Query: 68 GLHASPMAADRVV---AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
SP+ +RV+ A ++ QE + + + + D +E C+KAI LF
Sbjct: 601 ---ESPLIKERVLQDEATQMEMKTIQEILCRFRQITPDGSEVGCMKAIALF 648
>gi|221124181|ref|XP_002154441.1| PREDICTED: photoreceptor-specific nuclear receptor-like [Hydra
magnipapillata]
Length = 438
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
D + + LF +V WA++IP F +L +DQ LL WSELF+L+ Q S P+ + L
Sbjct: 245 DKLYHSSLHFLFMSVSWAQSIPKFLELPFSDQALLLEESWSELFILSMIQYSEPIELGVL 304
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L + G A ++ + + ++ Q+ V + + L +D E++CLKA VLF
Sbjct: 305 LYSIG--AENASSQKGSNDIQELQTLQQIVYRFQNLAIDCTEFACLKATVLF 354
>gi|195030592|ref|XP_001988152.1| GH11011 [Drosophila grimshawi]
gi|193904152|gb|EDW03019.1| GH11011 [Drosophila grimshawi]
Length = 719
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W + + F L DQ LL+ W ELF+LN +Q ++PL + P+L
Sbjct: 527 ETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL--- 583
Query: 68 GLHASPMAADRVV---AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
SP+ +RV+ A ++ QE + + + + D +E C+KAI LF
Sbjct: 584 ---ESPLIKERVLQDEATQIEMKTIQEILCRFRQITPDGSEVGCMKAIALF 631
>gi|148670954|gb|EDL02901.1| estrogen related receptor, beta, isoform CRA_a [Mus musculus]
Length = 394
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +CELA R L + WA++IP FP L + DQ++LL+ W E+ +L S+P
Sbjct: 277 LTTLCELADRELVFLINWAKHIPGFPSLTLGDQMSLLQSAWMEILILGIVYRSLPYDDK- 335
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
LA A + R+V +D R + V + K L V+ E+ LKA+ L +GK
Sbjct: 336 -LAYAEDYIMDEEHSRLVGLLDLYRAILQLVRRYKKLKVEKEEFMILKALALANSGK 391
>gi|410902791|ref|XP_003964877.1| PREDICTED: nuclear receptor subfamily 5 group A member 2-like
[Takifugu rubripes]
Length = 539
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 62/115 (53%), Gaps = 5/115 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP--- 62
+C++A + LF VEWARN F +L+V DQ+ LL+ WSEL VL+ C ++
Sbjct: 343 MCKMADQTLFGLVEWARNSALFKELKVEDQMVLLQSCWSELLVLDHL-CRQVIYSKEGCI 401
Query: 63 -LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L++ + S + + + Q+ V KLKAL +D E+ CLK +VLF
Sbjct: 402 YLVSGQQIEVSTILSQAGATLSGLVSRTQDLVSKLKALQLDRQEFVCLKYLVLFN 456
>gi|47086369|ref|NP_997999.1| nuclear receptor subfamily 5, group A, member 1b [Danio rerio]
gi|28916416|gb|AAO59489.1| Ff1d [Danio rerio]
gi|33468585|emb|CAE30391.1| novel protein similar to Carassius auratus nuclear hormone receptor
FTZ-F1 [Danio rerio]
gi|190336813|gb|AAI62260.1| Nuclear receptor subfamily 5, group A, member 1b [Danio rerio]
gi|190339356|gb|AAI62252.1| Nuclear receptor subfamily 5, group A, member 1b [Danio rerio]
Length = 502
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 25/133 (18%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLN--ASQ---------- 53
+C +A + LFS VEWAR+ FF +L+V DQ+ LL WSEL VL+ A Q
Sbjct: 304 MCHMADQTLFSIVEWARSCIFFKELKVGDQMKLLHNCWSELLVLDYVARQLHHGKEDSVL 363
Query: 54 --CSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKA 111
+ +A LLA AG+ S M I+ QE V++L+ L +D E +CLK
Sbjct: 364 LITGQEVELASLLAQAGVTLSGM-----------IQRGQELVQRLQELQLDRRETACLKY 412
Query: 112 IVLFTTGKRIFTG 124
++LF ++
Sbjct: 413 LILFNPDVKLLEN 425
>gi|6094487|sp|O16845.1|TLL_DROVI RecName: Full=Protein tailless; AltName: Full=Nuclear receptor
subfamily 2 group E member 2
gi|2440021|gb|AAB71370.1| tailless protein [Drosophila virilis]
Length = 450
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 225 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLLLLEESWKEFFILAMAQYLMPMNF 284
Query: 61 APLLAAAGLHASPMAADRVVAFM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL ++ S A +V + + FQ +L L++DS EY CL+AI LF
Sbjct: 285 AQLLF---VYESENANREIVTIVAREVHAFQAVPNRLCHLNIDSTEYECLRAISLF 337
>gi|125772581|ref|XP_001357592.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|195159108|ref|XP_002020424.1| GL13521 [Drosophila persimilis]
gi|54637324|gb|EAL26726.1| GA12521 [Drosophila pseudoobscura pseudoobscura]
gi|194117193|gb|EDW39236.1| GL13521 [Drosophila persimilis]
Length = 454
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 229 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLMLLEESWKEFFILAMAQYLMPMNF 288
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
A LL A + V + FQ+ + +L ++VDS EY CL+AI LF
Sbjct: 289 AQLLFV--YEAENNNREIVGMVSREVHAFQDVLNQLCHMNVDSTEYECLRAISLF 341
>gi|378925276|dbj|BAL63406.1| retinoic X receptor beta b, partial [Solea senegalensis]
Length = 182
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 12/119 (10%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 66 VTNICQTADKQLFALVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAMKDRV 125
Query: 63 LLA------AAGLHA----SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKA 111
LLA +AG+ A + + V A D RV E V K++ + +D E CL+A
Sbjct: 126 LLASELQRNSAGVGAIFDRENVQSAEVGAIFD--RVLTELVNKMRDMQMDKTELGCLRA 182
>gi|332021198|gb|EGI61583.1| Nuclear receptor subfamily 2 group E member 1 [Acromyrmex
echinatior]
Length = 396
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 9/115 (7%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
++ICE AARLLF V WAR++ +L + DQ+ LL W ELF+L A+Q L PL
Sbjct: 194 ESICEQAARLLFLNVHWARDLVSGTNLIMEDQLTLLESSWRELFLLAAAQMIPTLDPTPL 253
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
L P+ + + + F+E + A+++D E++C++AIVLF G
Sbjct: 254 L--------PLNL-QSIGLAIEVNRFRETLAGFHAMNLDQHEFACIRAIVLFKAG 299
>gi|440904694|gb|ELR55168.1| Retinoic acid receptor RXR-alpha, partial [Bos grunniens mutus]
Length = 485
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLV----WSELFVLNASQCSMPL 58
+ NIC+ A + LF+ VEWA+ IP F +L + DQ + W+EL + + S S+ +
Sbjct: 284 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQTTVTLCPALAGWNELLIASFSHRSIAV 343
Query: 59 HVAPLLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 344 KDG-ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 400
Query: 117 TGKR 120
+
Sbjct: 401 PDSK 404
>gi|157779744|gb|ABV71399.1| SF-1 [Cyprinus carpio]
Length = 503
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 25/131 (19%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLN--ASQ---------- 53
+C +A + LFS VEWAR+ FF +L+V DQ+ LL WSEL VL+ A Q
Sbjct: 305 MCHMADQTLFSIVEWARSCIFFKELKVGDQMKLLHNCWSELLVLDYIARQLHHGKEDSVL 364
Query: 54 --CSMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKA 111
+ +A LLA AG+ S M I+ QE V +L+ L +D E +CLK
Sbjct: 365 LITGQEVELASLLAQAGVTLSGM-----------IQRGQELVNRLRELQLDRRETACLKY 413
Query: 112 IVLFTTGKRIF 122
++LF ++
Sbjct: 414 LILFNPDVKLL 424
>gi|305690676|gb|ADM64635.1| ultraspiracle protein [Bactrocera dorsalis]
Length = 453
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 26/146 (17%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ ++C++ + L+ VE+AR +P F +LQ DQV LL+ W+EL + N + CS+ +
Sbjct: 235 VSHLCQMVNKQLYQMVEYARKMPHFAELQREDQVLLLKAGWNELLLANVAWCSID-SLDS 293
Query: 63 LLAAAGLH------ASPMAADRVVAFMDH------------------IRVFQEQVEKLKA 98
A +G H SP+ + + F++H R+ E K+K
Sbjct: 294 DYATSGGHDTSSGRRSPIRQPQQL-FLNHNFSYHRNSAIKAGVATIFDRILSELSVKMKR 352
Query: 99 LHVDSAEYSCLKAIVLFTTGKRIFTG 124
L++D +E SCLKAI+LF R G
Sbjct: 353 LNIDRSELSCLKAIILFNPDLRGLKG 378
>gi|296803356|gb|ADH51741.1| putative tailless protein [Episyrphus balteatus]
Length = 418
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
D+I E AA +LF W + F L ++DQ+ LL W +LF++ +QCS+ ++V +
Sbjct: 203 DHIKETAAEILFKNFNWIQKKATFKQLPMSDQLELLEDSWKDLFIIGMAQCSIAMNVEQI 262
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L R+V+ ++VF++ + + L +D+ EY CL+ I+LF
Sbjct: 263 LHTYESENPNKDIVRIVS--SEMQVFRDVIHQFHLLKLDNDEYECLREIMLF 312
>gi|195452812|ref|XP_002073511.1| GK14159 [Drosophila willistoni]
gi|194169596|gb|EDW84497.1| GK14159 [Drosophila willistoni]
Length = 457
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 4/116 (3%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
M ++I E AA LF V W +++ F +L + DQ+ LL W E F+L +Q MP++
Sbjct: 232 MAAEHIKETAAEHLFKNVNWIKSVRAFTELPMPDQLMLLEESWKEFFILAMAQYLMPMNF 291
Query: 61 APLLAAAGLHASPMAADRVVAFM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+ LL ++ S + +V + + FQ+ + +L ++DS EY CL+AI LF
Sbjct: 292 SQLLF---VYESENSNREIVGIVAREVHAFQDVLNQLCHFNIDSTEYECLRAISLF 344
>gi|116267937|ref|NP_001070740.1| nuclear receptor subfamily 5, group A, member 5 isoform 2 [Danio
rerio]
gi|115528620|gb|AAI24757.1| Nuclear receptor subfamily 5, group A, member 5 [Danio rerio]
Length = 511
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 19/122 (15%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVL-----------NASQC 54
+C++A + LF VEWARN F +L+V DQ+ LL+ WSEL VL + S C
Sbjct: 315 MCKMADQTLFGLVEWARNCELFKELKVDDQMVLLQSCWSELLVLDHLCRQVAYGRDGSIC 374
Query: 55 SMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ + AS + + V + Q+ V KL++L +D E+ CLK +VL
Sbjct: 375 --------LITGQQIEASTILSQAGVTLSSLVSRAQDLVTKLRSLQLDREEFVCLKYLVL 426
Query: 115 FT 116
F
Sbjct: 427 FN 428
>gi|91077386|ref|XP_975255.1| PREDICTED: similar to Dissatisfaction (Dsf) [Tribolium castaneum]
gi|270002823|gb|EEZ99270.1| dissatisfaction [Tribolium castaneum]
Length = 483
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 9/112 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W R + F L DQ+ LL+ W ELF+L+ +Q S+P ++ LL
Sbjct: 290 ETTARLLFMAVRWVRCLAPFQTLSKHDQLLLLQESWKELFLLHLAQWSVPWDLSALLGC- 348
Query: 68 GLHASPMAADRVVAFMD---HIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
P A +R+ A + I+ QE + + + + D +E C+KAI+LFT
Sbjct: 349 -----PQARERLPADIHTATEIKTIQEIMCRFRQISPDGSECGCMKAIILFT 395
>gi|197127315|gb|ACH43813.1| putative nuclear receptor subfamily 2 group F member 2 [Taeniopygia
guttata]
Length = 209
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 57/108 (52%), Gaps = 26/108 (24%)
Query: 157 LPLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSAS 211
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 117 CPIDQHHRNQCQYCRLKKCLXVGMRREAVQRGRMPPTQPTH------GQFA-LTNGDP-- 167
Query: 212 AASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMG 258
LN HS YLS YISLLLRAEPYPT+R+ SQCMQP G
Sbjct: 168 ----------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPPXHHG 204
>gi|47550853|ref|NP_999944.1| nuclear receptor subfamily 5, group A, member 5 isoform 1 [Danio
rerio]
gi|13345357|gb|AAK19303.1|AF327373_1 Ff1c [Danio rerio]
Length = 537
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 19/122 (15%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVL-----------NASQC 54
+C++A + LF VEWARN F +L+V DQ+ LL+ WSEL VL + S C
Sbjct: 341 MCKMADQTLFGLVEWARNCELFKELKVDDQMVLLQSCWSELLVLDHLCRQVAYGRDGSIC 400
Query: 55 SMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ + AS + + V + Q+ V KL++L +D E+ CLK +VL
Sbjct: 401 --------LITGQQIEASTILSQAGVTLSSLVSRAQDLVTKLRSLQLDREEFVCLKYLVL 452
Query: 115 FT 116
F
Sbjct: 453 FN 454
>gi|238558272|gb|ACR45970.1| ultraspiracle, partial [Acyrthosiphon pisum]
Length = 428
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
IC+ + L VEWA++IP F +L + DQV LLR W+EL + S S+ + +L
Sbjct: 235 ICQATDKQLIQLVEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFSHRSISVKDGIVL- 293
Query: 66 AAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFT 123
A GL +A + V A D RV E V K++ + +D E CL+ I+LF G +
Sbjct: 294 ATGLTVDRDSAHQAGVEAIFD--RVLTELVAKMRDMGMDRTELGCLRTIILFNPGSKGLQ 351
Query: 124 GV 125
V
Sbjct: 352 SV 353
>gi|239735516|ref|NP_001155140.1| ultraspiracle [Acyrthosiphon pisum]
Length = 433
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
IC+ + L VEWA++IP F +L + DQV LLR W+EL + S S+ + +L
Sbjct: 235 ICQATDKQLIQLVEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFSHRSISVKDGIVL- 293
Query: 66 AAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFT 123
A GL +A + V A D RV E V K++ + +D E CL+ I+LF G +
Sbjct: 294 ATGLTVDRDSAHQAGVEAIFD--RVLTELVAKMRDMGMDRTELGCLRTIILFNPGSKGLQ 351
Query: 124 GV 125
V
Sbjct: 352 SV 353
>gi|427794421|gb|JAA62662.1| Putative nuclear receptor hormone receptor in 78-like protein,
partial [Rhipicephalus pulchellus]
Length = 463
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + +CE A+R+LF ++ W R +P F +L + Q+ L+ WSE+F L QC+ + +
Sbjct: 242 LNVHYVCESASRILFRSLLWTRTLPAFEELPASLQLTLVESAWSEIFTLGLLQCAEQMQL 301
Query: 61 APLLAAAGLH--------ASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAI 112
+ LL+ H + M + + +H+ Q + + L D EY+ LK++
Sbjct: 302 STLLSTVSSHLNAKGGPASDIMGSSQRALVSEHVAALQRLLSATQRLQPDDQEYALLKSL 361
Query: 113 VLF 115
VLF
Sbjct: 362 VLF 364
>gi|344243870|gb|EGV99973.1| Nuclear receptor subfamily 5 group A member 2 [Cricetulus griseus]
Length = 301
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPL-HVAPLL 64
+C++A LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + LL
Sbjct: 185 MCKMADLTLFSIVEWARSSIFFRELKVDDQMKLLQNSWSELLILDHIYRQVVYGKEGSLL 244
Query: 65 AAAGLHA--SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
G H + + ++ V + + QE V + ++L D E+ CLK +VLF+ GK
Sbjct: 245 LITGQHVDYASIVSEAGVTLSNLVSHSQELVLRFRSLQFDHREFVCLKFLVLFSLGK 301
>gi|242046702|ref|XP_002399654.1| zinc finger, C4 type, putative [Ixodes scapularis]
gi|215501722|gb|EEC11216.1| zinc finger, C4 type, putative [Ixodes scapularis]
Length = 317
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
I ++CE + L V+WA+++P F +L + DQVALLR E +L ++ SM H+
Sbjct: 22 NISDVCESMKQQLLILVDWAKSVPSFTELSIEDQVALLRAHAGEHLLLGLARRSM--HIK 79
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+L P + V R+ E V L+ +H+D E++CL+AIV F
Sbjct: 80 NVLLLGNDFIIPRVSSEVEISRVGARIMDELVTTLREVHIDDTEFACLRAIVFF 133
>gi|47220030|emb|CAG12178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 515
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP--- 62
+C++A + LF VEWARN F +L+V DQ+ LL+ WSEL VL+ C +
Sbjct: 319 MCKMADQTLFGLVEWARNSSLFKELKVEDQMVLLQSCWSELLVLDHL-CRQVAYSKEGCI 377
Query: 63 -LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
L++ + S + + Q+ V KLKAL +D E+ CLK +VLF +
Sbjct: 378 YLVSGQQIEVSTILTQAGATLSGLVSRTQDLVSKLKALQLDRQEFVCLKYLVLFNPDVKS 437
Query: 122 FTG 124
G
Sbjct: 438 VQG 440
>gi|321454980|gb|EFX66127.1| hypothetical protein DAPPUDRAFT_116667 [Daphnia pulex]
Length = 340
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 4/112 (3%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+++ E AARLLF V WA++IP F L DQ LL W ELFVL +Q + L
Sbjct: 153 NDVNEAAARLLFLTVRWAKSIPSFSHLFYRDQSLLLEEAWCELFVLTVAQWGLSLDEVNT 212
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+ + + ++R ++ +R + V ++ L +D E++CLKA+VLF
Sbjct: 213 MR----NCPELTSERHELLLEGLRHLHQVVARIHLLRLDHTEFACLKALVLF 260
>gi|189239605|ref|XP_968613.2| PREDICTED: similar to hepatocyte nuclear factor 4 [Tribolium
castaneum]
Length = 405
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
I+++C+ + L VEWA+ IP F DLQ+ DQVALLR E +L ++ SM L
Sbjct: 206 INDVCDSMKQQLLILVEWAKYIPAFTDLQLDDQVALLRAHAGEHLLLGLARRSMHLKDIL 265
Query: 63 LLAAAGLHASPMAADRVVAFMD----HIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL + RV +D R+ E V+ + + VD E++CLKAIV F
Sbjct: 266 LLGNNCIITKHSPDSRVSPDLDISRVGSRIMDELVKPMTEVQVDDTEFACLKAIVFF 322
>gi|395508412|ref|XP_003758506.1| PREDICTED: hepatocyte nuclear factor 4-beta-like [Sarcophilus
harrisii]
Length = 474
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 8/116 (6%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
I ++CE + L VEWA+ IP F +L + DQVALLR E +L ++ S+P
Sbjct: 194 ISDVCESMKQQLLILVEWAKYIPVFWELPLDDQVALLRAHAGEHLLLGVAKRSIPFTDFL 253
Query: 63 LLAAA---GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL +H + RV IR+ E V+ L+ + +D EY+CLKAI+ F
Sbjct: 254 LLGNDFIIPMHCPELEIARVA-----IRILDELVKPLREIQIDDNEYACLKAIIFF 304
>gi|77632652|gb|ABB00308.1| ultraspiracle protein [Scaptotrigona depilis]
Length = 427
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC + LF V WA++IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 231 VSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGI 290
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H + V D RV E V K++ + +D E CL++I+LF
Sbjct: 291 VLATGITVHRNSAQQAGVGTIFD--RVLSELVSKMREMKMDRTELGCLRSIILFN 343
>gi|307189123|gb|EFN73579.1| Photoreceptor-specific nuclear receptor [Camponotus floridanus]
Length = 380
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 60/117 (51%), Gaps = 20/117 (17%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+NI E AA+LLF AV DQ LL WSELFVL A+Q S P+ + L
Sbjct: 211 ENIYEFAAKLLFFAVR--------------DQTILLEESWSELFVLTAAQWSFPVDESTL 256
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
+ + + +R +D R +E + K AL VD +EY+CLKAIVLF R
Sbjct: 257 VP------TDVPIERREVLLDKARRLRELLAKCVALRVDHSEYACLKAIVLFKAESR 307
>gi|58585210|ref|NP_001011634.1| ultraspiracle [Apis mellifera]
gi|8118613|gb|AAF73057.1|AF263459_1 ultraspiracle protein [Apis mellifera]
gi|30691980|gb|AAP33487.1| ultraspiracle protein [Apis mellifera]
Length = 427
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC + LF V WA++IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 231 VSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGI 290
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H + V D RV E V K++ + +D E CL++I+LF
Sbjct: 291 VLATGITVHRNSAQQAGVGTIFD--RVLSELVSKMREMKMDRTELGCLRSIILFN 343
>gi|195342848|ref|XP_002038010.1| GM18580 [Drosophila sechellia]
gi|194132860|gb|EDW54428.1| GM18580 [Drosophila sechellia]
Length = 196
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 9/111 (8%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA 67
E ARLLF AV W + + F L DQ LL+ W ELF+LN +Q ++PL + P+L
Sbjct: 4 ETTARLLFMAVRWVKCLMPFQTLSKNDQHLLLQESWKELFLLNLAQWTIPLDLTPIL--- 60
Query: 68 GLHASPMAADRVV---AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
SP+ +RV+ A ++ QE + + + + D +E C+KAI LF
Sbjct: 61 ---ESPLIRERVLQDEATQTEMKTIQEILCRFRQITPDGSEVGCMKAIALF 108
>gi|383848789|ref|XP_003700030.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Megachile
rotundata]
Length = 427
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC + LF V WA++IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 231 VSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGI 290
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H + V D RV E V K++ + +D E CL++I+LF
Sbjct: 291 VLATGITVHRNSAQQAGVGTIFD--RVLSELVSKMREMKMDRTELGCLRSIILFN 343
>gi|194592436|gb|ACF76563.1| LRH-1 [Tachysurus fulvidraco]
Length = 500
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNA--SQCSMPLHVAPL 63
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ Q + L
Sbjct: 304 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIFRQVIHTKEGSIL 363
Query: 64 LAAAGLHASPMAADRVVAFMDH-IRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L + A + A +++ + QE V KL++L +D E+ CLK +VLF+
Sbjct: 364 LVTGQQMDYALIASQAGATLNNLLSRAQELVSKLRSLQLDQREFVCLKFLVLFS 417
>gi|380012603|ref|XP_003690369.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like [Apis florea]
Length = 440
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC + LF V WA++IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 244 VSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGI 303
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H + V D RV E V K++ + +D E CL++I+LF
Sbjct: 304 VLATGITVHRNSAQQAGVGTIFD--RVLSELVSKMREMKMDRTELGCLRSIILFN 356
>gi|427778501|gb|JAA54702.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 448
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
++++C+ A R L V+WAR IP F +L V D+ ALL+ W+EL + S SM
Sbjct: 252 VNSMCQAADRQLHELVQWARRIPHFEELPVEDRTALLKAGWNELLIAAFSHRSMNARDGI 311
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GL +A RV E V K++ + +D E CL+A+VLF
Sbjct: 312 VL-ATGLVVQRHSAHSAGVGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFN 364
>gi|162416915|emb|CAJ53825.2| putative hepatocyte nuclear factor 4 [Mytilus galloprovincialis]
Length = 312
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 61/115 (53%), Gaps = 8/115 (6%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
D++CE + L VEWA+ IP F +L + DQVALLR E VL ++ SM + L
Sbjct: 125 DDVCESIKQQLLVLVEWAKYIPCFCELPLDDQVALLRAHAGEHLVLGVARRSMAVKDVLL 184
Query: 64 LAAAGL---HASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L G+ +A+ M + A RV E V + + +D E++C+KAIV F
Sbjct: 185 LGNDGIIPRNATDMEMGTIAA-----RVLDELVAAFRDIQIDDTEFACIKAIVFF 234
>gi|56608614|gb|AAW02952.1| ultraspiracle [Melipona scutellaris]
Length = 427
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC + LF V WA++IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 231 VSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGI 290
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H + V D RV E V K++ + +D E CL++I+LF
Sbjct: 291 VLATGITVHRNSAQQAGVGTIFD--RVLSELVSKMREMKMDRTELGCLRSIILFN 343
>gi|340719093|ref|XP_003397991.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus terrestris]
gi|350396161|ref|XP_003484462.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 1
[Bombus impatiens]
Length = 427
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC + LF V WA++IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 231 VSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGI 290
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H + V D RV E V K++ + +D E CL++I+LF
Sbjct: 291 VLATGITVHRNSAQQAGVGTIFD--RVLSELVSKMREMKMDRTELGCLRSIILFN 343
>gi|45384182|ref|NP_990409.1| nuclear receptor subfamily 5 group A member 2 [Gallus gallus]
gi|3334187|sp|O42101.1|NR5A2_CHICK RecName: Full=Nuclear receptor subfamily 5 group A member 2;
AltName: Full=FTF/LRH-1; AltName: Full=OR2.0
gi|2541858|dbj|BAA22838.1| FTF/LRH-1 [Gallus gallus]
Length = 501
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 66/115 (57%), Gaps = 5/115 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP--- 62
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + +HV
Sbjct: 305 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHVKEGSI 363
Query: 63 -LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ + S +A+ + + QE V KL++L D E+ CLK +VLF+
Sbjct: 364 LLVTGQQVDYSVIASQAGATLNNLMSHAQELVAKLRSLQFDLREFVCLKFLVLFS 418
>gi|427796277|gb|JAA63590.1| Putative retinoid x receptor alpha a, partial [Rhipicephalus
pulchellus]
Length = 420
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
++++C+ A R L V+WAR IP F +L V D+ ALL+ W+EL + S SM
Sbjct: 224 VNSMCQAADRQLHELVQWARRIPHFEELPVEDRTALLKAGWNELLIAAFSHRSMNARDGI 283
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GL +A RV E V K++ + +D E CL+A+VLF
Sbjct: 284 VL-ATGLVVQRHSAHSAGVGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFN 336
>gi|427777855|gb|JAA54379.1| Putative retinoid x receptor alpha a [Rhipicephalus pulchellus]
Length = 407
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
++++C+ A R L V+WAR IP F +L V D+ ALL+ W+EL + S SM
Sbjct: 211 VNSMCQAADRQLHELVQWARRIPHFEELPVEDRTALLKAGWNELLIAAFSHRSMNARDGI 270
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GL +A RV E V K++ + +D E CL+A+VLF
Sbjct: 271 VL-ATGLVVQRHSAHSAGVGDIFDRVLAELVAKMRDMKMDKTELGCLRAVVLFN 323
>gi|340719095|ref|XP_003397992.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus terrestris]
gi|350396164|ref|XP_003484463.1| PREDICTED: retinoic acid receptor RXR-alpha-A-like isoform 2
[Bombus impatiens]
Length = 405
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC + LF V WA++IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 209 VSHICNATNKQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGI 268
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H + V D RV E V K++ + +D E CL++I+LF
Sbjct: 269 VLATGITVHRNSAQQAGVGTIFD--RVLSELVSKMREMKMDRTELGCLRSIILFN 321
>gi|190340082|gb|AAI63909.1| Nr5a5 protein [Danio rerio]
Length = 537
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 19/122 (15%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVL-----------NASQC 54
+C++A + LF VEWARN F +L+V DQ+ LL+ WSEL VL + S C
Sbjct: 341 MCKMADQTLFGLVEWARNCELFKELKVDDQMVLLQSCWSELLVLDHLCRQVAYGRDGSIC 400
Query: 55 SMPLHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ + AS + + + + Q+ V KL++L +D E+ CLK +VL
Sbjct: 401 --------LITGQQIEASTILSQAGMTLSSLVSRAQDLVTKLRSLQLDREEFVCLKYLVL 452
Query: 115 FT 116
F
Sbjct: 453 FN 454
>gi|156392347|ref|XP_001636010.1| predicted protein [Nematostella vectensis]
gi|156223109|gb|EDO43947.1| predicted protein [Nematostella vectensis]
Length = 351
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query: 13 LLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHAS 72
+L S ++W+R +P F +L V +Q ++LR W E+ +++A+Q +H+ + A + +
Sbjct: 152 ILVSTLDWSRRVPMFANLDVCEQYSVLRSRWCEMLIVSAAQ--YEVHIDGIPLAYEVEMN 209
Query: 73 P-MAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
P ++ + +R FQE V +L+ L + AEY+CLK I+LF+
Sbjct: 210 PGFCNEKQIQLKRSLRNFQESVWRLRGL--EEAEYACLKTIILFS 252
>gi|94959279|gb|ABF47516.1| steroidogenic factor 1 [Odontesthes hatcheri]
Length = 492
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNA--SQCSMPLHVAPL 63
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ Q + L
Sbjct: 296 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSIL 355
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVF-QEQVEKLKALHVDSAEYSCLKAIVLFT 116
L M A + A ++++ QE V +L++L +D E+ CLK +VLF+
Sbjct: 356 LVTGQQVDYAMIASQAGATLNNLLSHAQELVTRLRSLQLDQREFVCLKFLVLFS 409
>gi|124431283|gb|ABN11290.1| ultraspiracle protein [Myzus persicae]
Length = 267
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
IC+ + L VEWA++IP F +L + DQV LLR W+EL + S S+ + +L
Sbjct: 69 ICQATDKQLIQLVEWAKHIPHFKNLPLGDQVLLLRAGWNELMIAAFSHRSISVKDGIVL- 127
Query: 66 AAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
A GL +A + V A D RV E V K++ + +D E CL+ I+LF G +
Sbjct: 128 ATGLTVDRDSAHQAGVEAIFD--RVLTELVAKMRDMGMDRTELGCLRTIILFNPGSK 182
>gi|86620853|gb|AAP84609.2| steroidogenic factor 1 [Odontesthes bonariensis]
Length = 503
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 3/114 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNA--SQCSMPLHVAPL 63
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ Q + L
Sbjct: 307 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHVFRQVVHAKEGSIL 366
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVF-QEQVEKLKALHVDSAEYSCLKAIVLFT 116
L M A + A ++++ QE V +L++L +D E+ CLK +VLF+
Sbjct: 367 LVTGQQVDYAMIASQAGATLNNLLSHAQELVTRLRSLQLDQREFVCLKFLVLFS 420
>gi|15145791|gb|AAK54449.1| nuclear receptor FF1aE [Danio rerio]
gi|190340123|gb|AAI63522.1| Nr5a2 protein [Danio rerio]
Length = 517
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLN-ASQCSMPLHVAPLL 64
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + M +L
Sbjct: 321 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHVFRQVMHAKEGSIL 380
Query: 65 AAAGLHAS-PMAADRVVAFMDHIRVF-QEQVEKLKALHVDSAEYSCLKAIVLFT 116
G + A + A ++++ QE V KL++L +D E+ CLK +VLF+
Sbjct: 381 LVTGQQVDYALIASQAGATLNNLLSHAQELVSKLRSLQLDQREFVCLKFLVLFS 434
>gi|296230343|ref|XP_002760662.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 1
[Callithrix jacchus]
Length = 541
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNA--SQCSMPLHVAPL 63
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ Q +
Sbjct: 345 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIF 404
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVF-QEQVEKLKALHVDSAEYSCLKAIVLFT 116
L M A + A ++++ QE V KL++L D E+ CLK +VLF+
Sbjct: 405 LVTGQQVDYSMIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFS 458
>gi|195051719|ref|XP_001993157.1| GH13232 [Drosophila grimshawi]
gi|193900216|gb|EDV99082.1| GH13232 [Drosophila grimshawi]
Length = 774
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
I+++CE + L + VEWA+ IP F +LQ+ DQVALLR E +L S+ SM L
Sbjct: 369 INDVCESMKQQLLTLVEWAKQIPAFNELQLDDQVALLRAHAGEHLLLGLSRRSMQLKDVL 428
Query: 63 LLAAAGL--------HASP-MAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
LL+ + H SP + R+ A R+ E V +K + +D E++C+KA+V
Sbjct: 429 LLSNNCVITRHCPDPHVSPNLDISRIGA-----RIIDELVVVMKDVGIDETEFACIKALV 483
Query: 114 LF 115
F
Sbjct: 484 FF 485
>gi|118343798|ref|NP_001071721.1| nuclear receptor [Ciona intestinalis]
gi|70569703|dbj|BAE06460.1| nuclear receptor [Ciona intestinalis]
Length = 504
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
IC++A + L++ VEWA+ FF DLQV+DQ+ LL+ W EL +L+ Q + L +
Sbjct: 310 ICKIADQTLYAMVEWAKKSVFFADLQVSDQMKLLQDSWIELLILDHIQRQLKLKSDSIEL 369
Query: 66 AAG----LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
G S +++ V+ F R+ + +K L VD E +CLK +VLF T
Sbjct: 370 VTGHKFSRDLSKVSSHCVITFRILKRLMDLE-KKFAVLQVDEQEIACLKYLVLFDT 424
>gi|350420018|ref|XP_003492371.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus impatiens]
Length = 405
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
++ICE AARLLF V WA+ + L + DQ+ LL W ELF+L A+Q L L
Sbjct: 202 ESICEQAARLLFLNVHWAKELAAGTGLVLEDQLTLLEFSWRELFLLAAAQILPTLDPTTL 261
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
L A H +A + + F+E + A+++D E++C++AIVLF G
Sbjct: 262 LPPAP-HGLSLAVE--------VNRFRETLAGFHAMNLDQHEFACIRAIVLFKAG 307
>gi|296230345|ref|XP_002760663.1| PREDICTED: nuclear receptor subfamily 5 group A member 2 isoform 2
[Callithrix jacchus]
Length = 495
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNA--SQCSMPLHVAPL 63
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ Q +
Sbjct: 299 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIF 358
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVF-QEQVEKLKALHVDSAEYSCLKAIVLFT 116
L M A + A ++++ QE V KL++L D E+ CLK +VLF+
Sbjct: 359 LVTGQQVDYSMIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFS 412
>gi|358333531|dbj|GAA52025.1| nuclear receptor subfamily 2 group F member 5 [Clonorchis sinensis]
Length = 972
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 33/146 (22%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPL---- 58
I+ + A R++ ++VEWA+NIP F L + DQ++L++ W ELFV+N +Q S
Sbjct: 445 INCDTDFAVRVILASVEWAKNIPLFTGLPLHDQLSLIQNAWPELFVINVAQASTSHTPES 504
Query: 59 ---HVAPLL---AAAGLHA------------SPMAADRVVAFMDH-----------IRVF 89
H +P L AG ++ SP + + + A + + F
Sbjct: 505 FRSHNSPELFEATPAGTNSQSLCYNLSPNRKSPCSQEGIDATRSNSKEEIPSTSELVDRF 564
Query: 90 QEQVEKLKALHVDSAEYSCLKAIVLF 115
Q+QV++L+ L +D AE+ LK I+LF
Sbjct: 565 QDQVDRLRMLQLDMAEFVSLKGILLF 590
>gi|340712958|ref|XP_003395019.1| PREDICTED: nuclear receptor subfamily 2 group E member 1-like
[Bombus terrestris]
Length = 405
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
++ICE AARLLF V WA+ + L + DQ+ LL W ELF+L A+Q L L
Sbjct: 202 ESICEQAARLLFLNVHWAKELAAGTTLVLEDQLTLLEFSWRELFLLAAAQILPTLDPTTL 261
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
L A H +A + + F+E + A+++D E++C++AIVLF G
Sbjct: 262 LPPAP-HGLSLAVE--------VNRFRETLAGFHAMNLDQHEFACIRAIVLFKAG 307
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,463,037,028
Number of Sequences: 23463169
Number of extensions: 171995797
Number of successful extensions: 490296
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2519
Number of HSP's successfully gapped in prelim test: 1089
Number of HSP's that attempted gapping in prelim test: 479558
Number of HSP's gapped (non-prelim): 8830
length of query: 295
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 154
effective length of database: 9,050,888,538
effective search space: 1393836834852
effective search space used: 1393836834852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 76 (33.9 bits)