BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1615
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CJW|A Chain A, Crystal Structure Of The Human Coup-Tfii Ligand Binding
Domain
Length = 244
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 37 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 96
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 97 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 153
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/51 (90%), Positives = 50/51 (98%), Gaps = 1/51 (1%)
Query: 238 RAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
RAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LFSAVEWARNIPFFPDLQ
Sbjct: 17 RAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQ 67
>pdb|3P0U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
pdb|3P0U|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Human
Testicular Receptor 4
Length = 249
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 34 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 93
Query: 61 APLLAAA------GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 94 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 153
Query: 115 FT 116
F+
Sbjct: 154 FS 155
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDL 286
+ + ICE A+RLLF ++ WAR+IP F L
Sbjct: 34 LNVHYICESASRLLFLSMHWARSIPAFQAL 63
>pdb|2GL8|A Chain A, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|B Chain B, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|C Chain C, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
pdb|2GL8|D Chain D, Human Retinoic Acid Receptor Rxr-Gamma Ligand-Binding
Domain
Length = 241
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 44 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 103
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 104 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 155
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 240 EPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
EP + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 25 EPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 71
>pdb|1DKF|A Chain A, Crystal Structure Of A Heterodimeric Complex Of Rar And
Rxr Ligand-Binding Domains
Length = 233
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + +AS S+ +
Sbjct: 41 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASASHRSIAVKDGI 100
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 101 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 157
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 41 VTNICQAADKQLFTLVEWAKRIPHFSEL 68
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 329
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 330 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 382
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSEL 297
>pdb|1LBD|A Chain A, Ligand-Binding Domain Of The Human Nuclear Receptor
Rxr-Alpha
Length = 282
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 85 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 144
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 145 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 197
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 85 VTNICQAADKQLFTLVEWAKRIPHFSEL 112
>pdb|3E94|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Tributyltin And A Coactivator Fragment
pdb|3KWY|A Chain A, Crystal Structure Of Rxralpha Ligand Binding Domain In
Complex With Triphenyltin And A Coactivator Fragment
Length = 244
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 47 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 106
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 107 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 163
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 47 VTNICQAADKQLFTLVEWAKRIPHFSEL 74
>pdb|3UVV|B Chain B, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 244
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 45 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 104
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 105 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 157
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 45 VTNICQAADKQLFTLVEWAKRIPHFSEL 72
>pdb|1RDT|A Chain A, Crystal Structure Of A New Rexinoid Bound To The Rxralpha
Ligand Binding Doamin In The RxralphaPPARGAMMA
HETERODIMER
pdb|3FC6|A Chain A, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|C Chain C, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|A Chain A, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|C Chain C, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 242
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 45 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 104
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 105 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 161
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 45 VTNICQAADKQLFTLVEWAKRIPHFSEL 72
>pdb|3A9E|A Chain A, Crystal Structure Of A Mixed Agonist-Bound Rar-Alpha And
Antagonist- Bound Rxr-Alpha Heterodimer Ligand Binding
Domains
Length = 240
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 43 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 102
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 103 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 159
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
PN+ + NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 39 PND--PVTNICQAADKQLFTLVEWAKRIPHFSEL 70
>pdb|1MV9|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Eicosanoid Dha (Docosa Hexaenoic
Acid) And A Coactivator Peptide
pdb|1MVC|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To The Synthetic Agonist Compound Bms 649
And A Coactivator Peptide
pdb|1MZN|A Chain A, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|C Chain C, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|E Chain E, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|1MZN|G Chain G, Crystal Structure At 1.9 Angstroems Resolution Of The
Homodimer Of Human Rxr Alpha Ligand Binding Domain Bound
To The Synthetic Agonist Compound Bms 649 And A
Coactivator Peptide
pdb|2P1T|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Methoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|2P1U|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With 3-(2'-Ethoxy)-
Tetrahydronaphtyl Cinnamic Acid And A Fragment Of The
Coactivator Tif-2
pdb|2P1V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Retinoid X Receptor Alpha In Complex With
3-(2'-Propoxy)- Tetrahydronaphtyl Cinnamic Acid And A
Fragment Of The Coactivator Tif-2
pdb|3FUG|A Chain A, Crystal Structure Of The Retinoid X Receptor Ligand
Binding Domain Bound To The Synthetic Agonist
3-[4-Hydroxy-3-(3,5,
5,8,8-Pentamethyl-5,6,7,8-Tetrahydronaphthalen-2-Yl)-
Phenyl]acrylic Acid
pdb|2ZXZ|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|2ZY0|C Chain C, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To A Synthetic Agonist Compound And A
Coactivator Peptide
pdb|3NSP|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSP|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd
pdb|3NSQ|A Chain A, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3NSQ|B Chain B, Crystal Structure Of Tetrameric Rxralpha-Lbd Complexed
With Antagonist Danthron
pdb|3R29|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R29|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2
pdb|3R2A|A Chain A, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|B Chain B, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|C Chain C, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R2A|D Chain D, Crystal Structure Of Rxralpha Ligand-Binding Domain
Complexed With Corepressor Smrt2 And Antagonist Rhein
pdb|3R5M|A Chain A, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
pdb|3R5M|C Chain C, Crystal Structure Of Rxralphalbd Complexed With The
Agonist Magnolol
Length = 240
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 43 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 102
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 103 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 159
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
PN+ + NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 39 PND--PVTNICQAADKQLFTLVEWAKRIPHFSEL 70
>pdb|1XDK|A Chain A, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|E Chain E, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 238
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 41 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 100
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 101 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 157
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
PN+ + NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 37 PND--PVTNICQAADKQLFTLVEWAKRIPHFSEL 68
>pdb|1XV9|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XV9|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XVP|A Chain A, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
pdb|1XVP|C Chain C, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 236
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 39 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 98
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 99 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 155
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 39 VTNICQAADKQLFTLVEWAKRIPHFSEL 66
>pdb|1FBY|A Chain A, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
pdb|1FBY|B Chain B, Crystal Structure Of The Human Rxr Alpha Ligand Binding
Domain Bound To 9-Cis Retinoic Acid
Length = 239
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 42 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 101
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 102 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 158
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
PN+ + NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 38 PND--PVTNICQAADKQLFTLVEWAKRIPHFSEL 69
>pdb|1FM6|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM6|U Chain U, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Rosiglitazone And Co-Activator Peptides.
pdb|1FM9|A Chain A, The 2.1 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Rxralpha And Ppargamma Ligand
Binding Domains Respectively Bound With 9-Cis Retinoic
Acid And Gi262570 And Co-Activator Peptides.
pdb|1G5Y|A Chain A, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|B Chain B, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|C Chain C, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G5Y|D Chain D, The 2.0 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain Tetramer In The Presence
Of A Non-Activating Retinoic Acid Isomer.
pdb|1G1U|A Chain A, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|B Chain B, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|C Chain C, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1G1U|D Chain D, The 2.5 Angstrom Resolution Crystal Structure Of The
Rxralpha Ligand Binding Domain In Tetramer In The
Absence Of Ligand
pdb|1K74|A Chain A, The 2.3 Angstrom Resolution Crystal Structure Of The
Heterodimer Of The Human Ppargamma And Rxralpha Ligand
Binding Domains Respectively Bound With Gw409544 And
9-Cis Retinoic Acid And Co-Activator Peptides.
pdb|2ACL|A Chain A, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|C Chain C, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|E Chain E, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|G Chain G, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|3OZJ|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
pdb|3OZJ|C Chain C, Crystal Structure Of Human Retinoic X Receptor Alpha
Complexed With Bigelovin And Coactivator Src-1
Length = 238
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 41 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 100
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 101 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 157
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
PN+ + NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 37 PND--PVTNICQAADKQLFTLVEWAKRIPHFSEL 68
>pdb|1XLS|A Chain A, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|B Chain B, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|C Chain C, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|D Chain D, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 232
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 39 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 98
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 99 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 155
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 39 VTNICQAADKQLFTLVEWAKRIPHFSEL 66
>pdb|3PCU|A Chain A, Crystal Structure Of Human Retinoic X Receptor Alpha
Ligand-Binding Domain Complexed With Lx0278 And Src1
Peptide
Length = 230
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 37 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 96
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 97 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 153
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
PN+ + NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 33 PND--PVTNICQAADKQLFTLVEWAKRIPHFSEL 64
>pdb|3OAP|A Chain A, Crystal Structure Of Human Retinoid X Receptor
Alpha-Ligand Binding Domain Complex With 9-Cis Retinoic
Acid And The Coactivator Peptide Grip-1
Length = 231
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 38 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 97
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 98 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 154
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
PN+ + NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 34 PND--PVTNICQAADKQLFTLVEWAKRIPHFSEL 65
>pdb|3H0A|A Chain A, Crystal Structure Of Peroxisome Proliferator-Activated
Receptor Gamma (Pparg) And Retinoic Acid Receptor Alpha
(Rxra) In Complex With 9-Cis Retinoic Acid, Co-Activator
Peptide, And A Partial Agonist
Length = 228
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 38 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 97
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF +
Sbjct: 98 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK 154
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
PN+ + NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 34 PND--PVTNICQAADKQLFTLVEWAKRIPHFSEL 65
>pdb|1XIU|A Chain A, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
pdb|1XIU|B Chain B, Crystal Structure Of The Agonist-Bound Ligand-Binding
Domain Of Biomphalaria Glabrata Rxr
Length = 230
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 33 VTNICQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSI-MAKDG 91
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
+L A GLH +A + RV E V K++ + +D E CL+A+VLF +
Sbjct: 92 ILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGL 151
Query: 123 TGV 125
T V
Sbjct: 152 TAV 154
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 33 VTNICQAADKQLFTLVEWAKRIPHFTEL 60
>pdb|3EYB|A Chain A, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|B Chain B, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|C Chain C, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
pdb|3EYB|D Chain D, Structural And Functional Insights Into The Ligand Binding
Domain Of A Non-Duplicated Rxr From The Invertebrate
Chordate Amphioxus
Length = 219
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + L + VEWA+ IP F DL + DQV LLR W+EL + S S+ +
Sbjct: 29 VTNICQAADKQLVTLVEWAKRIPHFSDLPIDDQVILLRAGWNELLIAAFSHRSIDVKDGI 88
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A+GLH +A + RV E V K++ + +D E CL+AIVLF +
Sbjct: 89 LL-ASGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAIVLFNPDAKGL 147
Query: 123 T 123
T
Sbjct: 148 T 148
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Query: 252 QPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
QPN+ + NIC+ A + L + VEWA+ IP F DL
Sbjct: 24 QPND--PVTNICQAADKQLVTLVEWAKRIPHFSDL 56
>pdb|1H9U|A Chain A, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|B Chain B, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|C Chain C, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
pdb|1H9U|D Chain D, The Structure Of The Human Retinoid-X-Receptor Beta Ligand
Binding Domain In Complex With The Specific Synthetic
Agonist Lg100268
Length = 224
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 38 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 97
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 98 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 150
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F L
Sbjct: 38 VTNICQAADKQLFTLVEWAKRIPHFSSL 65
>pdb|1UHL|A Chain A, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 236
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 39 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 98
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 99 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 151
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F L
Sbjct: 39 VTNICQAADKQLFTLVEWAKRIPHFSSL 66
>pdb|2Q60|A Chain A, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|B Chain B, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|C Chain C, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
pdb|2Q60|D Chain D, Crystal Structure Of The Ligand Binding Domain Of
Polyandrocarpa Misakiensis Rxr In Tetramer In Absence Of
Ligand
Length = 258
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A R L + VEWA+ IP F L + DQV LLR W+EL + + S S+ + +
Sbjct: 60 VSNICKAADRQLVTLVEWAKRIPHFSSLPLEDQVILLRAGWNELLIASFSHRSIDVKDSI 119
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A+GLH +A + RV E V K++ + +D E CL+A+VLF
Sbjct: 120 LL-ASGLHVHRHSAHQAGVGPIFDRVLTELVSKMRDMMMDKTELGCLRAVVLFN 172
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 252 QPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
Q N + NIC+ A R L + VEWA+ IP F L
Sbjct: 53 QVNENDPVSNICKAADRQLVTLVEWAKRIPHFSSL 87
>pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +IC+ A R L+ +EWA++IP F +L V DQV LL+ W+EL + S SM +
Sbjct: 66 VSDICQAADRQLYQLIEWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRSMSVKDGI 125
Query: 63 LLAAA-GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+LA +H + V A D RV E V K++ + +D E CL++IVLF
Sbjct: 126 MLATGLVVHRNCAHQAGVGAIFD--RVLTELVAKMREMKMDKTELGCLRSIVLFN 178
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ +IC+ A R L+ +EWA++IP F +L
Sbjct: 66 VSDICQAADRQLYQLIEWAKHIPHFTEL 93
>pdb|2NXX|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|B Chain B, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|C Chain C, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|D Chain D, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 235
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
IC+ + LF V+WA+ +P F L +TDQV LLR W+EL + S SM A +L
Sbjct: 42 ICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVL- 100
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
A GL + A V + RV E V K+K + +D E CL+AI+L+ R
Sbjct: 101 ATGLTVNKSTAHAVGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNPDVR 155
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDL 286
IC+ + LF V+WA+ +P F L
Sbjct: 42 ICQATHKQLFQLVQWAKLVPHFTSL 66
>pdb|1ZH7|A Chain A, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
pdb|1ZH7|B Chain B, Structural And Biochemical Basis For Selective Repression
Of The Orphan Nuclear Receptor Lrh-1 By Shp
Length = 243
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA---- 61
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + VA
Sbjct: 47 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILD----HIYRQVAHGKE 102
Query: 62 -PLLAAAGLHA--SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
+ G H S + + VAF + + + QE V +L++L D E+ CLK +VLF++
Sbjct: 103 GTIFLVTGEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSD 162
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDLQ 287
+C++A + LFS VEWAR+ FF +L+
Sbjct: 47 LCKMADQTLFSIVEWARSSIFFRELK 72
>pdb|1PK5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|1PK5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Lrh-1
pdb|3F5C|A Chain A, Structure Of Dax-1:lrh-1 Complex
Length = 248
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 11/120 (9%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA---- 61
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + VA
Sbjct: 52 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILD----HIYRQVAHGKE 107
Query: 62 -PLLAAAGLHA--SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
+ G H S + + VAF + + + QE V +L++L D E+ CLK +VLF++
Sbjct: 108 GTIFLVTGEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLFSSD 167
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDLQ 287
+C++A + LFS VEWAR+ FF +L+
Sbjct: 52 LCKMADQTLFSIVEWARSSIFFRELK 77
>pdb|3TX7|B Chain B, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 352
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 5/115 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP--- 62
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + +H
Sbjct: 156 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 214
Query: 63 -LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ + S +A+ + + QE V KL++L D E+ CLK +VLF+
Sbjct: 215 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFS 269
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDLQ 287
+C++A + LFS VEWAR+ FF +L+
Sbjct: 156 MCKMADQTLFSIVEWARSSIFFRELK 181
>pdb|3PLZ|A Chain A, Human Lrh1 Lbd Bound To Gr470
pdb|3PLZ|B Chain B, Human Lrh1 Lbd Bound To Gr470
Length = 257
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 5/115 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP--- 62
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + +H
Sbjct: 61 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 119
Query: 63 -LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ + S +A+ + + QE V KL++L D E+ CLK +VLF+
Sbjct: 120 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFS 174
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDLQ 287
+C++A + LFS VEWAR+ FF +L+
Sbjct: 61 MCKMADQTLFSIVEWARSSIFFRELK 86
>pdb|1YUC|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|1YUC|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Phospholipid And A Fragment Of Human Shp
pdb|4DOR|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
pdb|4DOR|B Chain B, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
In Its Apo State Bound To A Fragment Of Human Shp Box1
Length = 255
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 5/115 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP--- 62
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + +H
Sbjct: 59 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 117
Query: 63 -LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ + S +A+ + + QE V KL++L D E+ CLK +VLF+
Sbjct: 118 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFS 172
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDLQ 287
+C++A + LFS VEWAR+ FF +L+
Sbjct: 59 MCKMADQTLFSIVEWARSSIFFRELK 84
>pdb|1YOK|A Chain A, Crystal Structure Of Human Lrh-1 Bound With Tif-2 Peptide
And Phosphatidylglycerol
Length = 256
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 5/115 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP--- 62
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + +H
Sbjct: 60 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 118
Query: 63 -LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ + S +A+ + + QE V KL++L D E+ CLK +VLF+
Sbjct: 119 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFS 173
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDLQ 287
+C++A + LFS VEWAR+ FF +L+
Sbjct: 60 MCKMADQTLFSIVEWARSSIFFRELK 85
>pdb|1ZDU|A Chain A, The Crystal Structure Of Human Liver Receptor Homologue-1
Length = 245
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 65/115 (56%), Gaps = 5/115 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP--- 62
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + +H
Sbjct: 49 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQV-VHGKEGSI 107
Query: 63 -LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ + S +A+ + + QE V KL++L D E+ CLK +VLF+
Sbjct: 108 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFS 162
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDLQ 287
+C++A + LFS VEWAR+ FF +L+
Sbjct: 49 MCKMADQTLFSIVEWARSSIFFRELK 74
>pdb|4DOS|A Chain A, Human Nuclear Receptor Liver Receptor Homologue-1, Lrh-1,
Bound To Dlpc And A Fragment Of Tif-2
Length = 242
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 64/115 (55%), Gaps = 5/115 (4%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP--- 62
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ +H
Sbjct: 49 MCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHI-YRQVVHGKEGSI 107
Query: 63 -LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ + S +A+ + + QE V KL++L D E+ CLK +VLF+
Sbjct: 108 FLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFS 162
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDLQ 287
+C++A + LFS VEWAR+ FF +L+
Sbjct: 49 MCKMADQTLFSIVEWARSSIFFRELK 74
>pdb|1M7W|A Chain A, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|B Chain B, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|C Chain C, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|D Chain D, Hnf4a Ligand Binding Domain With Bound Fatty Acid
Length = 250
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
I ++CE L VEWA+ IP F +L + DQVALLR E +L A++ SM
Sbjct: 42 SITDVCESMKEQLLVLVEWAKYIPAFCELLLDDQVALLRAHAGEHLLLGATKRSMVFKDV 101
Query: 62 PLLAAAGL---HASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL + H +A V+ IR+ E V + L +D EY+CLKAI+ F
Sbjct: 102 LLLGNDYIVPRHCPELAEMSRVS----IRILDELVLPFQELQIDDNEYACLKAIIFF 154
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 243 PTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
P + + ++ I I ++CE L VEWA+ IP F +L
Sbjct: 27 PISGINGDIRAKRIASITDVCESMKEQLLVLVEWAKYIPAFCEL 70
>pdb|1LV2|A Chain A, Hepatocyte Nuclear Factor 4 Is A Transcription Factor That
Constitutively Binds Fatty Acids
Length = 229
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
I ++CE + L VEWA+ IP F +L + DQVALLR E +L A++ SM
Sbjct: 37 IGDVCESMKQQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMMYKDIL 96
Query: 63 LLAAAGL---HASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL + ++ + RV RV E V + + +D EY+CLKAIV F
Sbjct: 97 LLGNNYVIHRNSCEVEISRVAN-----RVLDELVRPFQEIQIDDNEYACLKAIVFF 147
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 254 NNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
I I ++CE + L VEWA+ IP F +L
Sbjct: 32 KKIASIGDVCESMKQQLLVLVEWAKYIPAFCEL 64
>pdb|1PZL|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Src-1 Peptide
Length = 237
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
I ++CE L VEWA+ IP F +L + DQVALLR E +L A++ SM
Sbjct: 42 SIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDV 101
Query: 62 PLLAAAGL---HASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL + H +A V+ IR+ E V + L +D EY+ LKAI+ F
Sbjct: 102 LLLGNDYIVPRHCPELAEMSRVS----IRILDELVLPFQELQIDDNEYAYLKAIIFF 154
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 243 PTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
P + + ++ I I ++CE L VEWA+ IP F +L
Sbjct: 27 PVSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCEL 70
>pdb|3FS1|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Pgc-1a Fragment
Length = 230
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
I ++CE L VEWA+ IP F +L + DQVALLR E +L A++ SM
Sbjct: 37 IADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKDVL 96
Query: 63 LLAAAGL---HASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL + H +A V+ IR+ E V + L +D EY+ LKAI+ F
Sbjct: 97 LLGNDYIVPRHCPELAEMSRVS----IRILDELVLPFQELQIDDNEYAYLKAIIFF 148
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 243 PTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
P + + ++ I I ++CE L VEWA+ IP F +L
Sbjct: 21 PVSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCEL 64
>pdb|2OCF|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 298
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 3/144 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 46 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 102
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 103 GKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 162
Query: 121 IFTGVLLKALHVDSAEYSCLKAIV 144
F LK+L + L I
Sbjct: 163 TFLSSTLKSLEEKDHIHRVLDKIT 186
>pdb|2JFA|B Chain B, Estrogen Receptor Alpha Lbd In Complex With An Affinity-
Selected Corepressor Peptide
pdb|2BJ4|B Chain B, Estrogen Receptor Alpha Lbd In Complex With A
Phage-Display Derived Peptide Antagonist
Length = 252
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 62 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 118
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 119 GKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 178
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 179 TFLSSTLKSLEEKDHIHRVLDKI 201
>pdb|3UU7|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
Length = 251
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 42 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 98
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 99 GKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 158
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 159 TFLSSTLKSLEEKDHIHRVLDKI 181
>pdb|3Q97|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 49 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 105
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 106 GKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 165
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 166 TFLSSTLKSLEEKDHIHRVLDKI 188
>pdb|3Q95|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
pdb|3Q97|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Two Isomers Of Ethoxy
Triphenylethylene
Length = 260
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 49 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 105
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 106 GKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 165
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 166 TFLSSTLKSLEEKDHIHRVLDKI 188
>pdb|1ZKY|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|1ZKY|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-3m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1V|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2FAI|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-2m And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B1Z|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17methyl-17alpha-Dihydroequilenin And A
Glucoc Interacting Protein 1 Nr Box Ii Peptide
pdb|2B23|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2B23|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain And A
Glucocorticoid Receptor-Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G44|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G44|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Obcp-1m-G And A Glucocorticoid Receptor
Interacting Protein 1 Nr Box Ii Peptide
pdb|2G5O|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
pdb|2G5O|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 2- (But-1-Enyl)-17beta-Estradiol And A
Glucocorticoid Receptor Interacting Protein 1 Nr Box Ii
Peptide
Length = 257
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 46 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 102
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 103 GKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 162
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 163 TFLSSTLKSLEEKDHIHRVLDKI 185
>pdb|3UU7|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-A
pdb|3UUD|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 42 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 98
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 99 GKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 158
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 159 TFLSSTLKSLEEKDHIHRVLDKI 181
>pdb|2XHS|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Fushi
Tarazu Factor 1 Of Drosophila Melanogaster
Length = 245
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 20/124 (16%)
Query: 7 CELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNA----------SQCSM 56
C++ + LFS V+WARN FF DL+V DQ LL+ WS+ VL+ + +
Sbjct: 52 CKVLDQNLFSQVDWARNTVFFKDLKVDDQXKLLQHSWSDXLVLDHLHHRIHNGLPDETQL 111
Query: 57 PLHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L + GL P D F E KL+ L D +Y C K ++L
Sbjct: 112 NNGQVFNLXSLGLLGVPQLGD----------YFNELQNKLQDLKFDXGDYVCXKFLILLN 161
Query: 117 TGKR 120
R
Sbjct: 162 PSVR 165
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 263 CELAARLLFSAVEWARNIPFFPDLQ 287
C++ + LFS V+WARN FF DL+
Sbjct: 52 CKVLDQNLFSQVDWARNTVFFKDLK 76
>pdb|3D24|A Chain A, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
pdb|3D24|C Chain C, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
Length = 253
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 12/134 (8%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +C+L R + + WA++IP F L ++DQ+++L+ VW E+ VL +Q S+PL
Sbjct: 55 VATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQ-DE 113
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
L A L A R + + V +L+AL ++ EY LKA+ L +
Sbjct: 114 LAFAEDLVLDEEGA-RAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANS----- 167
Query: 123 TGVLLKALHVDSAE 136
++H++ AE
Sbjct: 168 -----DSVHIEDAE 176
>pdb|1R1K|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO PONASTERONE A
pdb|1R20|A Chain A, Crystal Structure Of The Ligand-Binding Domains Of The
Heterodimer EcrUSP BOUND TO THE SYNTHETIC AGONIST
BYI06830
pdb|2R40|A Chain A, Crystal Structure Of 20e Bound Ecr/usp
pdb|3IXP|A Chain A, Crystal Structure Of The Ecdysone Receptor Bound To
Byi08346
Length = 263
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 21/133 (15%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSM------ 56
+ ++C++ + + + V WAR+IP F L++ DQ+ L++ W+EL + + SM
Sbjct: 43 VSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEE 102
Query: 57 -------------PLHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDS 103
P + L+ LH + V D RV E K++ L VD
Sbjct: 103 RDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFD--RVLSELSLKMRTLRVDQ 160
Query: 104 AEYSCLKAIVLFT 116
AEY LKAI+L
Sbjct: 161 AEYVALKAIILLN 173
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+ ++C++ + + + V WAR+IP F L+ +
Sbjct: 43 VSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQI 76
>pdb|3HM1|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
pdb|3HM1|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And Estrone
((8r,9s,13s,14s)-3-Hydroxy-
7,8,9,11,12,14,15,
16-Octahydro-6h-Cyclopenta[a]phenanthren-
Length = 253
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 46 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 102
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 103 GKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 162
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 163 TFLSSTLKSLEEKDHIHRVLDKI 185
>pdb|1G2N|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Ultraspiracle Protein Usp, The Ortholog Of Rxrs In
Insects
Length = 264
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 21/133 (15%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSM------ 56
+ ++C++ + + + V WAR+IP F L++ DQ+ L++ W+EL + + SM
Sbjct: 44 VSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEE 103
Query: 57 -------------PLHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDS 103
P + L+ LH + V D RV E K++ L VD
Sbjct: 104 RDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFD--RVLSELSLKMRTLRVDQ 161
Query: 104 AEYSCLKAIVLFT 116
AEY LKAI+L
Sbjct: 162 AEYVALKAIILLN 174
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+ ++C++ + + + V WAR+IP F L+ +
Sbjct: 44 VSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQI 77
>pdb|1XB7|A Chain A, X-Ray Structure Of Erralpha Lbd In Complex With A Pgc-
1alpha Peptide At 2.5a Resolution
Length = 247
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
+ +C+L R + + WA++IP F L ++DQ+++L+ VW E+ VL +Q S+PL
Sbjct: 48 AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQ-D 106
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
L A L A R + + V +L+AL ++ EY LKA+ L +
Sbjct: 107 ELAFAEDLVLDEEGA-RAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANS---- 161
Query: 122 FTGVLLKALHVDSAE 136
++H++ AE
Sbjct: 162 ------DSVHIEDAE 170
>pdb|1L2I|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|1L2I|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With (R,R)-5,11-Cis-Diethyl-5,6,11,12-
Tetrahydrochrysene-2,8-Diol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
Length = 261
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 50 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 106
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 107 GKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 166
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 167 TFLSSTLKSLEEKDHIHRVLDKI 189
>pdb|3K6P|A Chain A, Estrogen Related Receptor Alpha In Complex With An Ether
Based Ligand
Length = 248
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 12/135 (8%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
+ +C+L R + + WA++IP F L ++DQ+++L+ VW E+ VL +Q S+PL
Sbjct: 49 AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQ-D 107
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
L A L A R + + V +L+AL ++ EY LKA+ L +
Sbjct: 108 ELAFAEDLVLDEEGA-RAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANS---- 162
Query: 122 FTGVLLKALHVDSAE 136
++H++ AE
Sbjct: 163 ------DSVHIEDAE 171
>pdb|2BJ4|A Chain A, Estrogen Receptor Alpha Lbd In Complex With A
Phage-Display Derived Peptide Antagonist
pdb|2JF9|A Chain A, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JF9|B Chain B, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JF9|C Chain C, Estrogen Receptor Alpha Lbd In Complex With A Tamoxifen-
Specific Peptide Antagonist
pdb|2JFA|A Chain A, Estrogen Receptor Alpha Lbd In Complex With An Affinity-
Selected Corepressor Peptide
Length = 252
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 62 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 118
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 119 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 178
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 179 TFLSSTLKSLEEKDHIHRVLDKI 201
>pdb|1UOM|A Chain A, The Structure Of Estrogen Receptor In Complex With A
Selective And Potent Tetrahydroisochiolin Ligand.
pdb|1XQC|A Chain A, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|B Chain B, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|C Chain C, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
pdb|1XQC|D Chain D, X-Ray Structure Of Eralpha Lbd Bound To A
Tetrahydroisoquinoline Serm Ligand At 2.05a Resolution
Length = 254
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 44 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSME-HP 100
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 101 GKLLFAPNLLLDRNQGKSVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 160
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 161 TFLSSTLKSLEEKDHIHRVLDKI 183
>pdb|1PCG|A Chain A, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|1PCG|B Chain B, Helix-Stabilized Cyclic Peptides As Selective Inhibitors
Of Steroid Receptor-Coactivator Interactions
pdb|2I0J|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|C Chain C, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0J|D Chain D, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
Length = 244
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 40 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSME-HP 96
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 97 GKLLFAPNLLLDRNQGKSVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 156
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 157 TFLSSTLKSLEEKDHIHRVLDKI 179
>pdb|1QKT|A Chain A, Mutant Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|2AYR|A Chain A, A Serm Designed For The Treatment Of Uterine Leiomyoma
With Unique Tissue Specificity For Uterus And Ovaries In
Rats
pdb|2Q70|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2Q70|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complxed To
A Benzopyran Ligand
pdb|2POG|A Chain A, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2POG|B Chain B, Benzopyrans As Selective Estrogen Receptor B Agonists
(Serbas). Part 2: Structure Activity Relationship
Studies On The Benzopyran Scaffold.
pdb|2QE4|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2QE4|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Benzopyran Agonist
pdb|2R6W|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6W|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
A Serm
pdb|2R6Y|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
pdb|2R6Y|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain In Complex
With A Serm
Length = 248
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 40 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSME-HP 96
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 97 GKLLFAPNLLLDRNQGKSVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 156
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 157 TFLSSTLKSLEEKDHIHRVLDKI 179
>pdb|2YAT|A Chain A, Crystal Structure Of Estradiol Derived Metal Chelate And
Estrogen Receptor-Ligand Binding Domain Complex
Length = 252
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 44 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLESAWLEILMIGLVWRSME-HP 100
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 101 GKLLFAPNLLLDRNQGKSVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 160
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 161 TFLSSTLKSLEEKDHIHRVLDKI 183
>pdb|1YMT|A Chain A, Mouse Sf-1 Lbd
Length = 246
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLN--ASQCSMPLHVAPL 63
+C +A + S V+WAR F +L+V DQ+ LL+ WSEL VL+ Q + L
Sbjct: 50 LCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSIL 109
Query: 64 LAAAG-LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L + S +A + QE V +L AL +D E+ CLK ++LF+
Sbjct: 110 LVTGQEVELSTVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFS 163
>pdb|3UUA|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
Length = 251
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 42 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 98
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 99 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 158
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 159 TFLSSTLKSLEEKDHIHRVLDKI 181
>pdb|1HG4|A Chain A, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|B Chain B, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|C Chain C, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|D Chain D, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|E Chain E, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
pdb|1HG4|F Chain F, Ultraspiracle Ligand Binding Domain From Drosophila
Melanogaster
Length = 279
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSM-PLHV 60
+ +C++ + LF VE+AR +P F + + DQV LL+ W EL + N + CS+ L
Sbjct: 48 AVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDD 107
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
G + +R + ++F Q + H +SA + + AI R
Sbjct: 108 GGAGGGGGGLGHDGSFERRSPGLQPQQLFLNQS---FSYHRNSAIKAGVSAIF-----DR 159
Query: 121 IFT--GVLLKALHVDSAEYSCLKAIVLFTTGKR 151
I + V +K L++D E SCLKAI+L+ R
Sbjct: 160 ILSELSVKMKRLNLDRRELSCLKAIILYNPDIR 192
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 238 RAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFF 283
R PY T +QP+ + +C++ + LF VE+AR +P F
Sbjct: 34 RVGPYST------VQPDYKGAVSALCQVVNKQLFQMVEYARMMPHF 73
>pdb|1ERR|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
pdb|1ERR|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With Raloxifene
Length = 253
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 43 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 99
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 100 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 159
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 160 TFLSSTLKSLEEKDHIHRVLDKI 182
>pdb|2QZO|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 47 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 103
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 104 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 163
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 164 TFLSSTLKSLEEKDHIHRVLDKI 186
>pdb|2QA8|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
pdb|2QZO|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Way-169916
Length = 258
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 47 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 103
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 104 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 163
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 164 TFLSSTLKSLEEKDHIHRVLDKI 186
>pdb|3Q95|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha Lbd In
Complex With Grip Peptide And Estriol
Length = 260
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 49 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 105
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 106 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 165
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 166 TFLSSTLKSLEEKDHIHRVLDKI 188
>pdb|3UUC|A Chain A, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|B Chain B, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|C Chain C, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
pdb|3UUC|D Chain D, Crystal Structure Of Hera-Lbd (Wt) In Complex With
Bisphenol-C
Length = 251
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 42 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 98
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 99 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 158
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 159 TFLSSTLKSLEEKDHIHRVLDKI 181
>pdb|3UUA|B Chain B, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Bisphenol-Af
pdb|3UUD|A Chain A, Crystal Structure Of Hera-Lbd (Y537s) In Complex With
Estradiol
Length = 251
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 42 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLEXAWLEILMIGLVWRSME-HP 98
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 99 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 158
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 159 TFLSSTLKSLEEKDHIHRVLDKI 181
>pdb|1YP0|A Chain A, Structure Of The Steroidogenic Factor-1 Ligand Binding
Domain Bound To Phospholipid And A Shp Peptide Motif
Length = 239
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLN--ASQCSMPLHVAPL 63
+C +A + S V+WAR F +L+V DQ+ LL+ WSEL VL+ Q + L
Sbjct: 44 LCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSIL 103
Query: 64 LAAAG-LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
L + S +A + QE V +L AL +D E+ CLK ++LF+ +
Sbjct: 104 LVTGQEVELSTVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFL 163
Query: 123 TG 124
Sbjct: 164 NN 165
>pdb|3OS8|A Chain A, Estrogen Receptor
pdb|3OS8|B Chain B, Estrogen Receptor
Length = 258
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 3/144 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL DQV LL W E+ ++ SM H
Sbjct: 48 MGL--LTNLADRELVHMINWAKRVPGFVDLTRHDQVHLLECAWLEILMIGLVWRSME-HP 104
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 105 GKLLFAPNLLLDRNQGKXVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 164
Query: 121 IFTGVLLKALHVDSAEYSCLKAIV 144
F LK+L + L I
Sbjct: 165 TFLSSTLKSLEEKDHIHRVLDKIT 188
>pdb|3DT3|A Chain A, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|3DT3|B Chain B, Human Estrogen Receptor Alpha Lbd With Gw368
pdb|2YJA|B Chain B, Stapled Peptides Binding To Estrogen Receptor Alpha
Length = 255
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 47 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 103
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 104 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 163
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 164 TFLSSTLKSLEEKDHIHRVLDKI 186
>pdb|2P15|A Chain A, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2P15|B Chain B, Crystal Structure Of The Er Alpha Ligand Binding Domain
With The Agonist Ortho-Trifluoromethylphenylvinyl
Estradiol
pdb|2Q6J|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2Q6J|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed To
A B-N Substituted Ligand
pdb|2QA6|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QA6|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Mutant 537s
Complexed With
4-(6-Hydroxy-1h-Indazol-3-Yl)benzene-1,3-Diol
pdb|2QAB|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QAB|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With An Ethyl
Indazole Compound
pdb|2QGT|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGT|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To An Ether Estradiol Compound
pdb|2QGW|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QGW|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With A Chloro-Indazole Compound
pdb|2QH6|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QH6|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic
Diarylethylene Compound
pdb|2QR9|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QR9|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With An Oxabicyclic Derivative
Compound
pdb|2QSE|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QSE|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed With Burned Meat Compound
4-Oh-Phip
pdb|2QXM|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
pdb|2QXM|B Chain B, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Complexed To Burned Meat Compound Phip
Length = 258
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 47 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 103
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 104 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 163
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 164 TFLSSTLKSLEEKDHIHRVLDKI 186
>pdb|2QXS|A Chain A, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
pdb|2QXS|B Chain B, Crystal Structure Of Antagonizing Mutant 536s Of The
Estrogen Receptor Alpha Ligand Binding Domain Complexed
To Raloxifene
Length = 258
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 47 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 103
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 104 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 163
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 164 TFLSSTLKSLEEKDHIHRVLDKI 186
>pdb|2QA8|A Chain A, Crystal Structure Of The Estrogen Receptor Alpha Ligand
Binding Domain Mutant 537s Complexed With Genistein
Length = 258
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 47 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 103
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 104 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 163
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 164 TFLSSTLKSLEEKDHIHRVLDKI 186
>pdb|2IOG|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 11f
Length = 246
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 35 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 91
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 92 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 151
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 152 TFLSSTLKSLEEKDHIHRVLDKI 174
>pdb|1ERE|A Chain A, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|B Chain B, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|C Chain C, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|D Chain D, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|E Chain E, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|1ERE|F Chain F, Human Estrogen Receptor Ligand-Binding Domain In Complex
With 17beta-Estradiol
pdb|2OUZ|A Chain A, Crystal Structure Of Estrogen Receptor Alpha-Lasofoxifene
Complex
Length = 253
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 43 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 99
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 100 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 159
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 160 TFLSSTLKSLEEKDHIHRVLDKI 182
>pdb|3ERD|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERD|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Diethylstilbestrol And A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide
pdb|3ERT|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With 4- Hydroxytamoxifen
pdb|1R5K|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|B Chain B, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
pdb|1R5K|C Chain C, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Gw5638
Length = 261
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 50 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 106
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 107 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 166
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 167 TFLSSTLKSLEEKDHIHRVLDKI 189
>pdb|1G50|A Chain A, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|B Chain B, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
pdb|1G50|C Chain C, Crystal Structure Of A Wild Type Her Alpha Lbd At 2.9
Angstrom Resolution
Length = 247
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 40 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 96
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 97 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 156
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 157 TFLSSTLKSLEEKDHIHRVLDKI 179
>pdb|1SJ0|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With The Antagonist Ligand 4-d
pdb|1XP1|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 15
pdb|1XP6|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 16
pdb|1XP9|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 18
pdb|1XPC|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 19
pdb|1YIM|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 4
pdb|1YIN|A Chain A, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Compound 3f
Length = 248
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 37 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 93
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 94 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 153
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 154 TFLSSTLKSLEEKDHIHRVLDKI 176
>pdb|1GWQ|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
pdb|1GWQ|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With Raloxifene Core And Tif2 Nrbox2 Peptide
Length = 248
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 43 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 99
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 100 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 159
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 160 TFLSSTLKSLEEKDHIHRVLDKI 182
>pdb|2IOK|A Chain A, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
pdb|2IOK|B Chain B, Human Estrogen Receptor Alpha Ligand-binding Domain In
Complex With Compound 1d
Length = 254
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 43 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 99
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 100 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 159
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 160 TFLSSTLKSLEEKDHIHRVLDKI 182
>pdb|1A52|A Chain A, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
pdb|1A52|B Chain B, Estrogen Receptor Alpha Ligand-Binding Domain Complexed To
Estradiol
Length = 258
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 47 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 103
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 104 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 163
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 164 TFLSSTLKSLEEKDHIHRVLDKI 186
>pdb|1QKU|A Chain A, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|B Chain B, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
pdb|1QKU|C Chain C, Wild Type Estrogen Nuclear Receptor Ligand Binding Domain
Complexed With Estradiol
Length = 250
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 43 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 99
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 100 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 159
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 160 TFLSSTLKSLEEKDHIHRVLDKI 182
>pdb|3L03|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
pdb|3L03|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Binding Domain In Complex With A Glucocorticoid
Receptor Interacting Protein 1 Nr Box Ii Peptide And
Estetrol (Estra-1,3,5(10)-Triene-3,15 Alpha,
16alpha,17beta-Tetrol)
Length = 253
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 46 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 102
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 103 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 162
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 163 TFLSSTLKSLEEKDHIHRVLDKI 185
>pdb|4DMA|A Chain A, Crystal Structure Of Era Lbd In Complex With Ru100132
pdb|4DMA|B Chain B, Crystal Structure Of Era Lbd In Complex With Ru100132
Length = 247
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 41 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 97
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 98 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 157
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 158 TFLSSTLKSLEEKDHIHRVLDKI 180
>pdb|3HLV|A Chain A, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
pdb|3HLV|B Chain B, Crystal Structure Of Human Estrogen Receptor Alpha
Ligand-Bi Domain In Complex With A Glucocorticoid
Receptor Interactin 1 Nr Box Ii Peptide And
16-Alpha-Hydroxy-Estrone ((8s,9r,13
16r)-3,16-Dihydroxy-13-Methyl-7,8,9,11,12,14,15,
16-Octahyd Cyclopenta[a]phenanthren-17-One
Length = 253
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 46 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 102
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 103 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 162
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 163 TFLSSTLKSLEEKDHIHRVLDKI 185
>pdb|1GWR|A Chain A, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
pdb|1GWR|B Chain B, Human Oestrogen Receptor Alpha Ligand-Binding Domain In
Complex With 17beta-Oestradiol And Tif2 Nrbox3 Peptide
Length = 245
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 39 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 95
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 96 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 155
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 156 TFLSSTLKSLEEKDHIHRVLDKI 178
>pdb|1X7E|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7E|B Chain B, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Way-244
pdb|1X7R|A Chain A, Crystal Structure Of Estrogen Receptor Alpha Complexed
With Genistein
Length = 245
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 39 MGL--LTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HP 95
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 96 VKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 155
Query: 121 IFTGVLLKALHVDSAEYSCLKAI 143
F LK+L + L I
Sbjct: 156 TFLSSTLKSLEEKDHIHRVLDKI 178
>pdb|3OS8|C Chain C, Estrogen Receptor
pdb|3OS8|D Chain D, Estrogen Receptor
pdb|3OS9|A Chain A, Estrogen Receptor
pdb|3OS9|B Chain B, Estrogen Receptor
pdb|3OS9|C Chain C, Estrogen Receptor
pdb|3OS9|D Chain D, Estrogen Receptor
pdb|3OSA|A Chain A, Estrogen Receptor
pdb|3OSA|B Chain B, Estrogen Receptor
pdb|3OSA|C Chain C, Estrogen Receptor
pdb|3OSA|D Chain D, Estrogen Receptor
Length = 258
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 3/144 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MG+ + LA R L + WA+ +P F DL DQV LL W E+ ++ SM H
Sbjct: 48 MGL--LTNLADRELVHMINWAKRVPGFVDLTRHDQVHLLECAWLEILMIGLVWRSME-HP 104
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A L V ++ + + + +++ E+ CLK+I+L +G
Sbjct: 105 GKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVY 164
Query: 121 IFTGVLLKALHVDSAEYSCLKAIV 144
F LK+L + L I
Sbjct: 165 TFLSSTLKSLEEKDHIHRVLDKIT 188
>pdb|2PJL|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
pdb|2PJL|B Chain B, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
Length = 247
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 12/135 (8%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
+ + +L R + + WA++IP F L ++DQ+++L+ VW E+ VL +Q S+PL
Sbjct: 48 AVATLSDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQ-D 106
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
L A L A R + + V +L+AL ++ EY LKA+ L +
Sbjct: 107 ELAFAEDLVLDEEGA-RAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALANS---- 161
Query: 122 FTGVLLKALHVDSAE 136
++H++ AE
Sbjct: 162 ------DSVHIEDAE 170
>pdb|1VJB|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1VJB|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1TFC|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|1TFC|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|2P7A|A Chain A, Crystal Structure Of Estrogen Related Receptor G In
Complex With 3-Methyl Phenol
pdb|2P7G|A Chain A, X-Ray Structure Of Estrogen Related Receptor G In Complex
With Bisphenol A.
pdb|2P7Z|A Chain A, Estrogen Related Receptor Gamma In Complex With 4-Hydroxy-
Tamoxifen
Length = 251
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
+ +C+LA R L + WA++IP F L + DQ++LL+ W E+ +L S+
Sbjct: 57 ALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE 116
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L A + ++ +D + V+K K++ ++ E+ LKAI L
Sbjct: 117 --LVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 167
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 254 NNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
++I + +C+LA R L + WA++IP F L
Sbjct: 53 SDIKALTTLCDLADRELVVIIGWAKHIPGFSTL 85
>pdb|1S9Q|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
pdb|1S9Q|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
Length = 251
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
+ +C+LA R L + WA++IP F L + DQ++LL+ W E+ +L S+
Sbjct: 57 ALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE 116
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L A + ++ +D + V+K K++ ++ E+ LKAI L
Sbjct: 117 --LVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 167
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 254 NNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
++I + +C+LA R L + WA++IP F L
Sbjct: 53 SDIKALTTLCDLADRELVVIIGWAKHIPGFSTL 85
>pdb|3F7D|A Chain A, Sf-1 Lbd Bound By Phosphatidylcholine
Length = 244
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLN--ASQCSMPLHVAPL 63
+ +A + S V+WAR F +L+V DQ+ LL+ WSEL VL+ Q + L
Sbjct: 48 LXRMADQTFISIVDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSIL 107
Query: 64 LAAAG-LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L + S +A + QE V +L AL +D E+ CLK ++LF+
Sbjct: 108 LVTGQEVELSTVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFS 161
>pdb|2E2R|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol A
pdb|2ZAS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With 4-Alpha-Cumylphenol,
A Bisphenol A Derivative
pdb|2ZBS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Apo Form
pdb|2ZKC|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol Z
Length = 244
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
+ +C+LA R L + WA++IP F L + DQ++LL+ W E+ +L S+
Sbjct: 49 ALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE 108
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L A + ++ +D + V+K K++ ++ E+ LKAI L
Sbjct: 109 --LVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 159
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 254 NNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
++I + +C+LA R L + WA++IP F L
Sbjct: 45 SDIKALTTLCDLADRELVVIIGWAKHIPGFSTL 77
>pdb|1S9P|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|C Chain C, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|D Chain D, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
Length = 227
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
+ +C+LA R L + WA++IP F L + DQ++LL+ W E+ +L S+
Sbjct: 33 ALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE 92
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L A + ++ +D + V+K K++ ++ E+ LKAI L
Sbjct: 93 --LVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 143
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 254 NNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
++I + +C+LA R L + WA++IP F L
Sbjct: 29 SDIKALTTLCDLADRELVVIIGWAKHIPGFSTL 61
>pdb|2EWP|A Chain A, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|B Chain B, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|C Chain C, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|D Chain D, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|E Chain E, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
Length = 226
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
+ +C+LA R L + WA++IP F L + DQ++LL+ W E+ +L S+
Sbjct: 32 ALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE 91
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L A + ++ +D + V+K K++ ++ E+ LKAI L
Sbjct: 92 --LVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 142
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 254 NNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
++I + +C+LA R L + WA++IP F L
Sbjct: 28 SDIKALTTLCDLADRELVVIIGWAKHIPGFSTL 60
>pdb|1KV6|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|1KV6|B Chain B, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|2GP7|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|C Chain C, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|D Chain D, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GPO|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Synthetic Peptide From Rip140
pdb|2GPP|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPP|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPU|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen
pdb|2GPV|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|B Chain B, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|C Chain C, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|D Chain D, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|E Chain E, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|F Chain F, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
Length = 230
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
+ +C+LA R L + WA++IP F L + DQ++LL+ W E+ +L S+
Sbjct: 36 ALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE 95
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L A + ++ +D + V+K K++ ++ E+ LKAI L
Sbjct: 96 --LVYADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIAL 146
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 254 NNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
++I + +C+LA R L + WA++IP F L
Sbjct: 32 SDIKALTTLCDLADRELVVIIGWAKHIPGFSTL 64
>pdb|3LTX|A Chain A, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|B Chain B, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|C Chain C, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
pdb|3LTX|D Chain D, Crystal Structure Of The Pacific Oyster Estrogen Receptor
Ligand Binding Domain
Length = 243
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 7/121 (5%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
++++ +LA R L + WA+N+P + DL ++DQV L+ W EL +LN + S+ H
Sbjct: 38 LNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNCAFRSIE-HGGK 96
Query: 63 LLAAA---GLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
LA A L S + + + + EQ+ + LH D E L+A+VL
Sbjct: 97 SLAFAPDLVLDRSSWSTVEMTEIFEQVAAVSEQMMQ-NHLHKD--ELLLLQAMVLVNAEV 153
Query: 120 R 120
R
Sbjct: 154 R 154
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 239 AEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
A P + ++ P + ++++ +LA R L + WA+N+P + DL
Sbjct: 18 ALPVLESHHNHGQPPTKVHLLNSLVKLAERELVHLINWAKNVPGYTDL 65
>pdb|1YOW|A Chain A, Human Steroidogenic Factor 1 Lbd With Bound Co-Factor
Peptide
Length = 242
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLN 50
+C +A + S V+WAR F +L+V DQ+ LL+ WSEL V +
Sbjct: 46 LCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFD 90
>pdb|2FSZ|A Chain A, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
pdb|2FSZ|B Chain B, A Second Binding Site For Hydroxytamoxifen Within The
Coactivator-Binding Groove Of Estrogen Receptor Beta
Length = 246
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 41 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESSWMEVLMMGLMWRSID-HPGKLI 99
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 100 FAPDLVLDRDEGKSVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 153
>pdb|1L2J|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
pdb|1L2J|B Chain B, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With (R,
R)-5,11-Cis-Diethyl-5,6,11,12-Tetrahydrochrysene-2,
8-Diol
Length = 271
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 63 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLI 121
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 122 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 175
>pdb|1YY4|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YY4|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
1-Chloro-6-(4-Hydroxy-Phenyl)-Naphthalen-2-Ol
pdb|1YYE|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
pdb|1YYE|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-202196
Length = 268
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 35 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLI 93
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 94 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 147
>pdb|1ZDT|A Chain A, The Crystal Structure Of Human Steroidogenic Factor-1
pdb|1ZDT|B Chain B, The Crystal Structure Of Human Steroidogenic Factor-1
Length = 241
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLN 50
+C +A + S V+WAR F +L+V DQ+ LL+ WSEL V +
Sbjct: 45 LCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNCWSELLVFD 89
>pdb|1I37|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Dihydrotestosterone
pdb|2IHQ|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domian Complex With An N-Aryl-
Hydroxybicyclohydantoin
pdb|2NW4|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With Bms-564929
pdb|3G0W|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain Complex With An N-Aryl-Oxazolidin 2-Imine
Inhibitor
Length = 260
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 42 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 101
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 102 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 153
Query: 115 FT 116
F+
Sbjct: 154 FS 155
>pdb|2Q7K|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And An Ar 20-30
Peptide
pdb|2Q7L|A Chain A, The Androgen Receptor Prostate Cancer Mutant H874y Ligand
Binding Domain Bound With Testosterone And A Tif2 Box3
Coactivator Peptide 740-753
Length = 257
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 39 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 98
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 99 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 150
Query: 115 FT 116
F+
Sbjct: 151 FS 152
>pdb|2AM9|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Testosterone
pdb|2AMA|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Dihydrotestosterone
pdb|2AMB|A Chain A, Crystal Structure Of Human Androgen Receptor Ligand
Binding Domain In Complex With Tetrahydrogestrinone
pdb|2PNU|A Chain A, Crystal Structure Of Human Androgen Receptor
Ligand-Binding Domain In Complex With Em-5744
pdb|3V49|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 1
Length = 266
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 48 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 107
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 108 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 159
Query: 115 FT 116
F+
Sbjct: 160 FS 161
>pdb|1I38|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With
Dihydrotestosterone
pdb|1XNN|A Chain A, Crystal Structure Of The Rat Androgen Receptor Ligand
Binding Domain T877a Mutant Complex With (3a-Alpha-,4-
Alpha
7-Alpha-,7a-Alpha-)-3a,4,7,7a-Tetrahydro-2-(4-Nitro-
1-Naphthalenyl)-4,7-Ethano-1h-Isoindole-1,3(2h)-Dione
Length = 260
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 42 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 101
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 102 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 153
Query: 115 FT 116
F+
Sbjct: 154 FS 155
>pdb|2AX9|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With R-3
pdb|2AXA|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With S-1
pdb|2YLO|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLP|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|2YLQ|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|3ZQT|A Chain A, Targeting The Binding Function 3 Site Of The Androgen
Receptor Through In Silico Molecular Modeling
pdb|4HLW|A Chain A, Targeting The Binding Function 3 (bf3) Site Of The Human
Androgen Receptor Through Virtual Screening. 2.
Development Of 2-((2- Phenoxyethyl)
Thio)-1h-benzoimidazole Derivatives
Length = 256
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 38 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 97
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 98 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 149
Query: 115 FT 116
F+
Sbjct: 150 FS 151
>pdb|1XJ7|A Chain A, Complex Androgen Receptor Lbd And Rac3 Peptide
pdb|2Q7I|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And An Ar 20-30 Peptide
pdb|2Q7J|A Chain A, The Wild Type Androgen Receptor Ligand Binding Domain
Bound With Testosterone And A Tif2 Box 3 Coactivator
Peptide 740-753
Length = 257
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 39 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 98
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 99 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 150
Query: 115 FT 116
F+
Sbjct: 151 FS 152
>pdb|1T73|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxff Motif
pdb|1T74|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxlf Motif
pdb|1T76|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Wxxvw Motif
pdb|1T79|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlw Motif
pdb|1T7F|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Lxxll Motif
pdb|1T7M|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxyf Motif
pdb|1T7R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With A Fxxlf Motif
pdb|1T7T|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With 5-Alpha Dihydrotestosterone
Length = 269
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 51 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 110
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 111 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 162
Query: 115 FT 116
F+
Sbjct: 163 FS 164
>pdb|1E3G|A Chain A, Human Androgen Receptor Ligand Binding In Complex With The
Ligand Metribolone (R1881)
Length = 263
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 45 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 104
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 105 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 156
Query: 115 FT 116
F+
Sbjct: 157 FS 158
>pdb|2AX6|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With Hydroxyflutamide
pdb|2AX7|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain T877a Mutant In Complex With S-1
Length = 256
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 38 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 97
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 98 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 149
Query: 115 FT 116
F+
Sbjct: 150 FS 151
>pdb|2Z4J|A Chain A, Crystal Structure Of Ar Lbd With Shp Peptide Nr Box 2
Length = 248
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 31 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 90
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 91 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 142
Query: 115 FT 116
F+
Sbjct: 143 FS 144
>pdb|1XOW|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With An Androgen Receptor Nh2-
Terminal Peptide, Ar20-30, And R1881
pdb|1XQ3|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With R1881
pdb|2AO6|A Chain A, Crystal Structure Of The Human Androgen Receptor Ligand
Binding Domain Bound With Tif2(Iii) 740-753 Peptide And
R1881
pdb|3B5R|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-31
pdb|3B65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-24
pdb|3B66|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-21
pdb|3B67|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm C-23
pdb|3B68|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-4
pdb|2YHD|A Chain A, Human Androgen Receptor In Complex With Af2 Small Molecule
Inhibitor
pdb|3V4A|A Chain A, Structure Of Ar Lbd With Activator Peptide And Sarm
Inhibitor 2
Length = 249
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 31 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 90
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 91 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 142
Query: 115 FT 116
F+
Sbjct: 143 FS 144
>pdb|3L3X|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The First Motif Of Steroid Receptor
Coactivator 3
pdb|3L3Z|A Chain A, Crystal Structure Of Dht-Bound Androgen Receptor In
Complex With The Third Motif Of Steroid Receptor
Coactivator 3
Length = 250
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 33 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 92
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 93 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 144
Query: 115 FT 116
F+
Sbjct: 145 FS 146
>pdb|1T5Z|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain (Lbd) With Dht And A Peptide Derived From Its
Physiological Coactivator Ara70
pdb|1T63|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived From Its
Physiological Coactivator Grip1 Nr Box3
pdb|1T65|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain With Dht And A Peptide Derived Form Its
Physiological Coactivator Grip1 Nr Box 2 Bound In A Non-
Helical Conformation
pdb|2PIO|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIP|L Chain L, Androgen Receptor Lbd With Small Molecule
pdb|2PIQ|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIR|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIT|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIU|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2PIV|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIW|A Chain A, Androgen Receptor With Small Molecule
pdb|2PIX|A Chain A, Ar Lbd With Small Molecule
pdb|2PKL|A Chain A, Androgen Receptor Lbd With Small Molecule
pdb|2QPY|A Chain A, Ar Lbd With Small Molecule
Length = 251
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 33 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 92
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 93 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 144
Query: 115 FT 116
F+
Sbjct: 145 FS 146
>pdb|1QKM|A Chain A, Human Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Partial Agonist Genistein
Length = 255
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 43 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLI 101
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 102 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 155
>pdb|3RLJ|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain In Complex With Sarm S-22
Length = 247
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 31 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 90
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 91 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 142
Query: 115 FT 116
F+
Sbjct: 143 FS 144
>pdb|2OZ7|A Chain A, Crystal Structure Of The Human Androgen Receptor T877a
Mutant Ligand- Binding Domain With Cyproterone Acetate
Length = 249
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 31 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 90
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 91 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 142
Query: 115 FT 116
F+
Sbjct: 143 FS 144
>pdb|2HVC|A Chain A, The Crystal Structure Of Ligand-Binding Domain (Lbd) Of
Human Androgen Receptor In Complex With A Selective
Modulator Lgd2226
Length = 250
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 33 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 92
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 93 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 144
Query: 115 FT 116
F+
Sbjct: 145 FS 146
>pdb|3RLL|A Chain A, Crystal Structure Of The T877a Androgen Receptor Ligand
Binding Domain In Complex With
(S)-N-(4-Cyano-3-(Trifluoromethyl)phenyl)-3-(4-
Cyanonaphthalen-1-Yloxy)-2-Hydroxy-2-Methylpropanamide
Length = 247
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S
Sbjct: 31 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 90
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 91 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 142
Query: 115 FT 116
F+
Sbjct: 143 FS 144
>pdb|2I0G|A Chain A, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2I0G|B Chain B, Benzopyrans Are Selective Estrogen Receptor Beta Agonists
(Serbas) With Novel Activity In Models Of Benign
Prostatic Hyperplasia
pdb|2JJ3|A Chain A, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2JJ3|B Chain B, Estrogen Receptor Beta Ligand Binding Domain In Complex
With A Benzopyran Agonist
pdb|2Z4B|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2Z4B|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|A Chain A, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
pdb|2QTU|B Chain B, Estrogen Receptor Beta Ligand-Binding Domain Complexed To
A Benzopyran Ligand
Length = 257
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 49 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLI 107
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 108 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 161
>pdb|1GS4|A Chain A, Structural Basis For The Glucocorticoid Response In A
Mutant Human Androgen Receptor (Arccr) Derived From An
Androgen-Independent Prostate Cancer
Length = 248
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 8 ELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP------LHVA 61
EL R L V+WA+ +P F +L V DQ+A+++ W L V S L+ A
Sbjct: 37 ELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFA 96
Query: 62 PLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
P L +H S M + V M H+ ++ L + E+ C+KA++LF+
Sbjct: 97 PDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLLFS 145
>pdb|1ZAF|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
pdb|1ZAF|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
3-Bromo-6-Hydroxy-2-(4-Hydroxy-Phenyl)-Inden-1-One
Length = 238
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 35 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLI 93
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 94 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSA 147
>pdb|1U9E|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U9E|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-397
pdb|1U3R|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
pdb|1U3R|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-338
Length = 241
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 37 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLI 95
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 96 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 149
>pdb|2YLY|A Chain A, Sulfonamides As Selective Estrogen Receptor Beta Agonists.
pdb|2YLY|B Chain B, Sulfonamides As Selective Estrogen Receptor Beta Agonists
Length = 240
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 38 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLI 96
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 97 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 150
>pdb|2NV7|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
pdb|2NV7|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-555
Length = 238
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 35 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLI 93
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 94 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 147
>pdb|1X76|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X76|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-697
pdb|1X78|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X78|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-244
pdb|1X7B|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7B|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Erb-041
pdb|1X7J|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1X7J|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Genistein
pdb|1U3Q|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|C Chain C, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3Q|D Chain D, Crystal Structure Of Estrogen Receptor Beta Complexed With
Cl-272
pdb|1U3S|A Chain A, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|1U3S|B Chain B, Crystal Structure Of Estrogen Receptor Beta Complexed With
Way-797
pdb|3OLS|A Chain A, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OLS|B Chain B, Crystal Structure Of Estrogen Receptor Beta Ligand Binding
Domain
pdb|3OMO|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMO|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMP|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|A Chain A, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|3OMQ|B Chain B, Fragment-Based Design Of Novel Estrogen Receptor Ligands
pdb|2YJD|A Chain A, Stapled Peptide Bound To Estrogen Receptor Beta
pdb|2YJD|B Chain B, Stapled Peptide Bound To Estrogen Receptor Beta
Length = 240
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 37 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLI 95
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 96 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 149
>pdb|2GIU|A Chain A, Human Estrogen Receptor Beta Ligand-Binding Domain In
Complex With Compound 45
Length = 241
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 38 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLI 96
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 97 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 150
>pdb|3OLL|A Chain A, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
pdb|3OLL|B Chain B, Crystal Structure Of Phosphorylated Estrogen Receptor Beta
Ligand Binding Domain
Length = 240
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 37 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLI 95
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 96 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 149
>pdb|1QKN|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Antagonist Raloxifene
pdb|1HJ1|A Chain A, Rat Oestrogen Receptor Beta Ligand-Binding Domain In
Complex With Pure Antioestrogen Ici164,384
Length = 255
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 43 SLTKLADKELVHMIGWAKKIPGFVELSLLDQVRLLESCWMEVLMVGLMWRSID-HPGKLI 101
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 102 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 155
>pdb|1NDE|A Chain A, Estrogen Receptor Beta With Selective Triazine Modulator
Length = 255
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 51 SLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSID-HPGKLI 109
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 110 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 163
>pdb|2J7X|A Chain A, Structure Of Estradiol-bound Estrogen Receptor Beta Lbd In
Complex With Lxxll Motif From Ncoa5
pdb|2J7Y|A Chain A, Structure Of 17-Epiestriol-Bound Estrogen Receptor Beta
Lbd In Complex With Lxxll Motif From Ncoa5
Length = 255
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H L+
Sbjct: 43 SLTKLADKELVHMIGWAKKIPGFVELSLLDQVRLLESCWMEVLMVGLMWRSID-HPGKLI 101
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
A L V ++ + + + L + EY C+KA++L +
Sbjct: 102 FAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSS 155
>pdb|1SR7|A Chain A, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1SR7|B Chain B, Progesterone Receptor Hormone Binding Domain With Bound
Mometasone Furoate
pdb|1ZUC|B Chain B, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
pdb|1ZUC|A Chain A, Progesterone Receptor Ligand Binding Domain In Complex
With The Nonsteroidal Agonist Tanaproget
Length = 259
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ +L R L S V+W++++P F +L + DQ+ L++ W L V S
Sbjct: 41 LTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQ 100
Query: 58 -LHVAPLLAAAGLHASPMAADRVVAF-MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L+ AP L L+ M + + ++ QE V+ L V E+ C+K ++L
Sbjct: 101 MLYFAPDLI---LNEQRMKESSFYSLCLTMWQIPQEFVK----LQVSQEEFLCMKVLLLL 153
Query: 116 TT 117
T
Sbjct: 154 NT 155
>pdb|3G8O|A Chain A, Progesterone Receptor With Bound Pyrrolidine 1
pdb|3G8O|B Chain B, Progesterone Receptor With Bound Pyrrolidine 1
Length = 263
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ +L R L S V+W++++P F +L + DQ+ L++ W L V S
Sbjct: 45 LTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQ 104
Query: 58 -LHVAPLLAAAGLHASPMAADRVVAF-MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L+ AP L L+ M + + ++ QE V+ L V E+ C+K ++L
Sbjct: 105 MLYFAPDLI---LNEQRMKESSFYSLCLTMWQIPQEFVK----LQVSQEEFLCMKVLLLL 157
Query: 116 TT 117
T
Sbjct: 158 NT 159
>pdb|2W8Y|A Chain A, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|2W8Y|B Chain B, Ru486 Bound To The Progesterone Receptor In A Destabilized
Agonistic Conformation
pdb|3ZR7|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZR7|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRA|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|A Chain A, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|3ZRB|B Chain B, Structural Basis For Agonism And Antagonism For A Set Of
Chemically Related Progesterone Receptor Modulators
pdb|4A2J|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4A2J|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In 11beta-
Substituted Steroids
pdb|4APU|A Chain A, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
pdb|4APU|B Chain B, Pr X-Ray Structures In Agonist Conformations Reveal Two
Different Mechanisms For Partial Agonism In
11beta-Substituted Steroid
Length = 260
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ +L R L S V+W++++P F +L + DQ+ L++ W L V S
Sbjct: 42 LTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQ 101
Query: 58 -LHVAPLLAAAGLHASPMAADRVVAF-MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L+ AP L L+ M + + ++ QE V+ L V E+ C+K ++L
Sbjct: 102 MLYFAPDLI---LNEQRMKESSFYSLCLTMWQIPQEFVK----LQVSQEEFLCMKVLLLL 154
Query: 116 TT 117
T
Sbjct: 155 NT 156
>pdb|1E3K|A Chain A, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|1E3K|B Chain B, Human Progesteron Receptor Ligand Binding Domain In
Complex With The Ligand Metribolone (R1881)
pdb|3D90|A Chain A, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
pdb|3D90|B Chain B, Crystal Structure Of The Human Progesterone Receptor
Ligand- Binding Domain Bound To Levonorgestrel
Length = 258
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ +L R L S V+W++++P F +L + DQ+ L++ W L V S
Sbjct: 40 LTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQ 99
Query: 58 -LHVAPLLAAAGLHASPMAADRVVAF-MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L+ AP L L+ M + + ++ QE V+ L V E+ C+K ++L
Sbjct: 100 MLYFAPDLI---LNEQRMKESSFYSLCLTMWQIPQEFVK----LQVSQEEFLCMKVLLLL 152
Query: 116 TT 117
T
Sbjct: 153 NT 154
>pdb|1SQN|A Chain A, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
pdb|1SQN|B Chain B, Progesterone Receptor Ligand Binding Domain With Bound
Norethindrone
Length = 261
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ +L R L S V+W++++P F +L + DQ+ L++ W L V S
Sbjct: 43 LTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQ 102
Query: 58 -LHVAPLLAAAGLHASPMAADRVVAF-MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L+ AP L L+ M + + ++ QE V+ L V E+ C+K ++L
Sbjct: 103 MLYFAPDLI---LNEQRMKESSFYSLCLTMWQIPQEFVK----LQVSQEEFLCMKVLLLL 155
Query: 116 TT 117
T
Sbjct: 156 NT 157
>pdb|1A28|A Chain A, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|1A28|B Chain B, Hormone-Bound Human Progesterone Receptor Ligand-Binding
Domain
pdb|2OVH|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Smrt
pdb|2OVM|A Chain A, Progesterone Receptor With Bound Asoprisnil And A Peptide
From The Co-Repressor Ncor
pdb|3HQ5|A Chain A, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand.
pdb|3HQ5|B Chain B, Progesterone Receptor Bound To An Alkylpyrrolidine Ligand
Length = 256
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ +L R L S V+W++++P F +L + DQ+ L++ W L V S
Sbjct: 38 LTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQ 97
Query: 58 -LHVAPLLAAAGLHASPMAADRVVAF-MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L+ AP L L+ M + + ++ QE V+ L V E+ C+K ++L
Sbjct: 98 MLYFAPDLI---LNEQRMKESSFYSLCLTMWQIPQEFVK----LQVSQEEFLCMKVLLLL 150
Query: 116 TT 117
T
Sbjct: 151 NT 152
>pdb|3RY9|A Chain A, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
pdb|3RY9|B Chain B, Crystal Structure Of The Resurrected Ancestral
Glucocorticoid Receptor 1 In Complex With Doc
Length = 250
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ L R + SAV+WA+ +P F +L + DQ+ LL+ W L + S
Sbjct: 32 LSSLNRLGGRQMISAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYQHTNGN 91
Query: 58 -LHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ AP L + + M I + + L V EY C+K ++L +
Sbjct: 92 MLYFAPDLIFNEERMQQSSMYELCKGMHKISL------EFVRLQVSYEEYLCMKVLLLLS 145
Query: 117 T 117
T
Sbjct: 146 T 146
>pdb|3KBA|A Chain A, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
pdb|3KBA|B Chain B, Progesterone Receptor Bound To Sulfonamide Pyrrolidine
Partial Agonist
Length = 253
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ +L R L S V+W++++P F +L + DQ+ L++ W L V S
Sbjct: 35 LTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQ 94
Query: 58 -LHVAPLLAAAGLHASPMAADRVVAF-MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L+ AP L L+ M + + ++ QE V+ L V E+ C+K ++L
Sbjct: 95 MLYFAPDLI---LNEQRMKESSFYSLCLTMWQIPQEFVK----LQVSQEEFLCMKVLLLL 147
Query: 116 TT 117
T
Sbjct: 148 NT 149
>pdb|2QW4|A Chain A, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|B Chain B, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|C Chain C, Human Nr4a1 Ligand-Binding Domain
pdb|2QW4|D Chain D, Human Nr4a1 Ligand-Binding Domain
Length = 273
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Query: 19 EWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADR 78
+WA IP F +L DQ LL + ELF+L + S P L+ +GL + R
Sbjct: 94 KWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGE-GKLIFCSGLVLHRLQCAR 152
Query: 79 VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYS 138
F D I L +L VD ++CL A+VL T + ++ L A S
Sbjct: 153 --GFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIA--S 208
Query: 139 CLKAIVLFTTGK--------RMFGK 155
CLK V G+ R+ GK
Sbjct: 209 CLKEHVAAVAGEPQPASCLSRLLGK 233
>pdb|1YJE|A Chain A, Crystal Structure Of The Rngfi-B Ligand-Binding Domain
Length = 264
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 19 EWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADR 78
+WA IP F +L DQ LL + ELF+L + S P L+ +GL + R
Sbjct: 85 KWAEKIPGFIELSPGDQDLLLESAFLELFILRLAYRSKPGE-GKLIFCSGLVLHRLQCAR 143
Query: 79 VVA-FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
++D+I F L +L VD ++CL A+VL T
Sbjct: 144 GFGDWIDNILAFS---RSLHSLGVDVPAFACLSALVLIT 179
>pdb|3MNO|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, F608s)
Mutations At 1.55a
Length = 261
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 31/140 (22%)
Query: 9 LAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAG 68
L R + +AV+WA+ IP F +L + DQ+ LL+ W L V A G
Sbjct: 50 LGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMVF----------------ALG 93
Query: 69 LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLK 128
+ A+ ++ F + + EQ L ++ D ++ +F L+
Sbjct: 94 WRSYRQASGNLLCFAPDL-IINEQRMTLPCMY-DQCKH-------------MLFISTELQ 138
Query: 129 ALHVDSAEYSCLKAIVLFTT 148
L V EY C+K ++L ++
Sbjct: 139 RLQVSYEEYLCMKTLLLLSS 158
>pdb|4FNE|A Chain A, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Doc Complex
pdb|4FN9|A Chain A, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Progesterone Complex
pdb|4FN9|B Chain B, X-Ray Crystal Structure Of The Ancestral 3-Keto Steroid
Receptor - Progesterone Complex
Length = 254
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ LA + L S V+WA+ +P F +L + DQ+ L++ W L S
Sbjct: 36 LSSLNRLAEKQLVSVVKWAKALPGFRNLHLDDQMTLIQYSWMGLMAFAMGWRSYKHTNGQ 95
Query: 58 -LHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ AP L + M A D + Q+ ++ L V E+ C+KA++L +
Sbjct: 96 MLYFAPDLI---FNEQRMQQS---AMYDLCQGMQQISQEFVRLQVTQEEFLCMKALLLLS 149
Query: 117 T 117
T
Sbjct: 150 T 150
>pdb|1NHZ|A Chain A, Crystal Structure Of The Antagonist Form Of Glucocorticoid
Receptor
pdb|1P93|A Chain A, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|B Chain B, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|C Chain C, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
pdb|1P93|D Chain D, Crystal Structure Of The Agonist Form Of Glucocorticoid
Receptor
Length = 280
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 9 LAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAG 68
L R + +AV+WA+ IP F +L + DQ+ LL+ W L S A LL A
Sbjct: 69 LGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAP 128
Query: 69 ---LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
++ M + H+ ++ +L+ V EY C+K ++L ++
Sbjct: 129 DLIINEQRMTLPDMYDQCKHMLYVSSELHRLQ---VSYEEYLCMKTLLLLSS 177
>pdb|3H52|A Chain A, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|B Chain B, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|C Chain C, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
pdb|3H52|D Chain D, Crystal Structure Of The Antagonist Form Of Human
Glucocorticoid Receptor
Length = 254
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 9 LAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAG 68
L R + +AV+WA+ IP F +L + DQ+ LL+ W L S A LL A
Sbjct: 43 LGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAP 102
Query: 69 ---LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
++ M + H+ ++ +L+ V EY C+K ++L ++
Sbjct: 103 DLIINEQRMTLPDMYDQCKHMLYVSSELHRLQ---VSYEEYLCMKTLLLLSS 151
>pdb|3V3E|B Chain B, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3E|A Chain A, Crystal Structure Of The Human Nur77 Ligand-Binding Domain
pdb|3V3Q|A Chain A, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
pdb|3V3Q|B Chain B, Crystal Structure Of Human Nur77 Ligand-Binding Domain In
Complex With Ethyl 2-[2,3,4
Trimethoxy-6(1-Octanoyl)phenyl]acetate
Length = 257
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Query: 19 EWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADR 78
+WA IP F +L DQ LL + ELF+L + S P L+ +GL + R
Sbjct: 70 KWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGE-GKLIFCSGLVLHRLQCAR 128
Query: 79 VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYS 138
F D I L +L VD ++CL A+VL T + ++ L A S
Sbjct: 129 --GFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGLQEPRRVEELQNRIA--S 184
Query: 139 CLKAIVLFTTGK--------RMFGK 155
CLK V G+ R+ GK
Sbjct: 185 CLKEHVAAVAGEPQPASCLSRLLGK 209
>pdb|4E2J|A Chain A, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
pdb|4E2J|B Chain B, X-Ray Crystal Structure Of The Ancestral Glucocorticoid
Receptor 2 Ligand Binding Domain In Complex With
Mometasone Furoate And Tif-2 Coactivator Fragment
Length = 250
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ + L R + SAV+WA+ +P F +L + DQ+ LL+ W L + S
Sbjct: 34 MSTLNRLGGRQVVSAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYKQSNGN 93
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
+L A ++ D + + + L V EY C+K ++L +T
Sbjct: 94 MLCFAPDLVINEERMQLPYMYDQCQQMLKISSEFVRLQVSYDEYLCMKVLLLLST 148
>pdb|3GN8|A Chain A, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
pdb|3GN8|B Chain B, X-Ray Crystal Structure Of Ancgr2 In Complex With
Dexamethasone
Length = 249
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ + L R + SAV+WA+ +P F +L + DQ+ LL+ W L + S
Sbjct: 32 MSTLNRLGGRQVVSAVKWAKALPGFRNLHLDDQMTLLQYSWMSLMAFSLGWRSYKQSNGN 91
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
+L A ++ D + + + L V EY C+K ++L +T
Sbjct: 92 MLCFAPDLVINEERMQLPYMYDQCQQMLKISSEFVRLQVSYDEYLCMKVLLLLST 146
>pdb|3BQD|A Chain A, Doubling The Size Of The Glucocorticoid Receptor Ligand
Binding Pocket By Deacylcortivazol
Length = 255
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%)
Query: 9 LAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAG 68
L R + +AV+WA+ IP F +L + DQ+ LL+ W L S A LL A
Sbjct: 44 LGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAP 103
Query: 69 LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
+ D + +L L V EY C+K ++L ++
Sbjct: 104 DLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSS 152
>pdb|3CLD|A Chain A, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3CLD|B Chain B, Ligand Binding Domain Of The Glucocorticoid Receptor
Complexed With Fluticazone Furoate
pdb|3K23|A Chain A, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|B Chain B, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K23|C Chain C, Glucocorticoid Receptor With Bound D-Prolinamide 11
pdb|3K22|A Chain A, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
pdb|3K22|B Chain B, Glucocorticoid Receptor With Bound Alaninamide 10 With
Tif2 Peptide
Length = 259
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%)
Query: 9 LAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAG 68
L R + +AV+WA+ IP F +L + DQ+ LL+ W L S A LL A
Sbjct: 48 LGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMYLMAFALGWRSYRQSSANLLCFAP 107
Query: 69 LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
+ D + +L L V EY C+K ++L ++
Sbjct: 108 DLIINEQRMTLPGMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSS 156
>pdb|3MNP|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By (A611v, V708a,
E711g) Mutations At 1.50a
Length = 261
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 31/140 (22%)
Query: 9 LAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAG 68
L R + +AV+WA+ IP F +L + DQ+ LL+ W L V A G
Sbjct: 50 LGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVF----------------ALG 93
Query: 69 LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLK 128
+ A+ ++ F + + EQ L ++ D ++ +F L+
Sbjct: 94 WRSYRQASGNLLCFAPDL-IINEQRMTLPCMY-DQCKH-------------MLFISTELQ 138
Query: 129 ALHVDSAEYSCLKAIVLFTT 148
L V EY C+K ++L ++
Sbjct: 139 RLQVSYEEYLCMKTLLLLSS 158
>pdb|1M2Z|A Chain A, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
pdb|1M2Z|D Chain D, Crystal Structure Of A Dimer Complex Of The Human
Glucocorticoid Receptor Ligand-Binding Domain Bound To
Dexamethasone And A Tif2 Coactivator Motif
Length = 257
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%)
Query: 9 LAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAG 68
L R + +AV+WA+ IP F +L + DQ+ LL+ W L S A LL A
Sbjct: 46 LGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSANLLCFAP 105
Query: 69 LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
+ D + +L L V EY C+K ++L ++
Sbjct: 106 DLIINEQRMTLPCMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSS 154
>pdb|3E7C|A Chain A, Glucocorticoid Receptor Lbd Bound To Gsk866
pdb|3E7C|B Chain B, Glucocorticoid Receptor Lbd Bound To Gsk866
Length = 257
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%)
Query: 9 LAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAG 68
L R + +AV+WA+ IP F +L + DQ+ LL+ W L S A LL A
Sbjct: 46 LGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMYLMAFALGWRSYRQSSANLLCFAP 105
Query: 69 LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
+ D + +L L V EY C+K ++L ++
Sbjct: 106 DLIINEQRMTLPGMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSS 154
>pdb|2AX8|A Chain A, Crystal Structure Of The Androgen Receptor Ligand Binding
Domain W741l Mutant In Complex With S-1
Length = 256
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ L V S
Sbjct: 38 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSLMGLMVFAMGWRSFTNVNSR 97
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 98 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 149
Query: 115 FT 116
F+
Sbjct: 150 FS 151
>pdb|1OVL|B Chain B, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|C Chain C, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|E Chain E, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|F Chain F, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 20 WARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRV 79
WA IP F DL DQ L + ELFVL + S P+ L+ G+ + R
Sbjct: 93 WAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVE-GKLIFCNGVVLHRLQCVR- 150
Query: 80 VAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSC 139
F + I E L+ ++D + +SC+ A+ T + ++ L + +C
Sbjct: 151 -GFGEWIDSIVEFSSNLQNXNIDISAFSCIAALAXVTERHGLKEPKRVEELQ--NKIVNC 207
Query: 140 LKAIVLFTTG 149
LK V F G
Sbjct: 208 LKDHVTFNNG 217
>pdb|1OVL|A Chain A, Crystal Structure Of Nurr1 Lbd
pdb|1OVL|D Chain D, Crystal Structure Of Nurr1 Lbd
Length = 271
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 20 WARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRV 79
WA IP F DL DQ L + ELFVL + S P+ L+ G+ + R
Sbjct: 93 WAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVE-GKLIFCNGVVLHRLQCVR- 150
Query: 80 VAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSC 139
F + I E L+ ++D + +SC+ A+ T + ++ L + +C
Sbjct: 151 -GFGEWIDSIVEFSSNLQNXNIDISAFSCIAALAXVTERHGLKEPKRVEELQ--NKIVNC 207
Query: 140 LKAIVLFTTG 149
LK V F G
Sbjct: 208 LKDHVTFNNG 217
>pdb|3MNE|A Chain A, Crystal Structure Of The Agonist Form Of Mouse
Glucocorticoid Receptor Stabilized By F608s Mutation At
1.96a
Length = 261
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 31/140 (22%)
Query: 9 LAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAG 68
L R + +AV+WA+ IP F +L + DQ+ LL+ W L A G
Sbjct: 50 LGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAF----------------ALG 93
Query: 69 LHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLK 128
+ A+ ++ F + + EQ L ++ D ++ +F L+
Sbjct: 94 WRSYRQASGNLLCFAPDL-IINEQRMTLPCMY-DQCKH-------------MLFISTELQ 138
Query: 129 ALHVDSAEYSCLKAIVLFTT 148
L V EY C+K ++L ++
Sbjct: 139 RLQVSYEEYLCMKTLLLLSS 158
>pdb|1Z95|A Chain A, Crystal Structure Of The Androgen Receptor Ligand-Binding
Domain W741l Mutant Complex With R-Bicalutamide
Length = 246
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ L V S
Sbjct: 30 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSLMGLMVFAMGWRSFTNVNSR 89
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + V M H+ ++ L + E+ C+KA++L
Sbjct: 90 MLYFAPDLVFNEYRMHKSRMYSQCVR--MRHLS------QEFGWLQITPQEFLCMKALLL 141
Query: 115 FT 116
F+
Sbjct: 142 FS 143
>pdb|1XDK|B Chain B, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
pdb|1XDK|F Chain F, Crystal Structure Of The RarbetaRXRALPHA LIGAND BINDING
Domain Heterodimer In Complex With 9-Cis Retinoic Acid
And A Fragment Of The Trap220 Coactivator
Length = 303
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 18/154 (11%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVL------NASQCSMP 57
D ELA + + VE+A+ +P F L + DQ+ LL+ ++ +L Q +M
Sbjct: 74 DKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMT 133
Query: 58 LHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
L +H + D + F Q L L +D E L AI L
Sbjct: 134 FSDGLTLNRTQMHNAGFG-----PLTDLVFTFANQ---LLPLEMDDTETGLLSAICLICG 185
Query: 118 GKRIFTGVLLKALHVDSAEYSCLKAIVLFTTGKR 151
++ L + VD + L+A+ ++ +R
Sbjct: 186 DRQ----DLEEPTKVDKLQEPLLEALKIYIRKRR 215
>pdb|1XAP|A Chain A, Structure Of The Ligand Binding Domain Of The Retinoic
Acid Receptor Beta
pdb|4DM6|A Chain A, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
pdb|4DM6|B Chain B, Crystal Structure Of Rarb Lbd Homodimer In Complex With
Ttnpb
pdb|4DM8|A Chain A, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
pdb|4DM8|B Chain B, Crystal Structure Of Rarb Lbd In Complex With 9cis
Retinoic Acid
Length = 267
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 18/154 (11%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVL------NASQCSMP 57
D ELA + + VE+A+ +P F L + DQ+ LL+ ++ +L Q +M
Sbjct: 72 DKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMT 131
Query: 58 LHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
L +H + D + F Q L L +D E L AI L
Sbjct: 132 FSDGLTLNRTQMHNAGFG-----PLTDLVFTFANQ---LLPLEMDDTETGLLSAICLICG 183
Query: 118 GKRIFTGVLLKALHVDSAEYSCLKAIVLFTTGKR 151
++ L + VD + L+A+ ++ +R
Sbjct: 184 DRQ----DLEEPTKVDKLQEPLLEALKIYIRKRR 213
>pdb|2Q1H|A Chain A, Ancestral Corticoid Receptor In Complex With Aldosterone
pdb|2Q1V|A Chain A, Ancestral Corticoid Receptor In Complex With Cortisol
Length = 250
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ LA + + S V+WA+ +P F +L + DQ+ L++ W L + S
Sbjct: 32 LSSLNRLAGKQMVSVVKWAKALPGFRNLHLDDQMTLIQYSWMSLMAFSLGWRSYKHTNGQ 91
Query: 58 -LHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ AP L A + M I QE V L V E+ C+K ++L +
Sbjct: 92 MLYFAPDLIFNEERMQQSAMYDLCQGMRQIS--QEFVR----LQVTYEEFLCMKVLLLLS 145
Query: 117 T 117
T
Sbjct: 146 T 146
>pdb|2Q3Y|A Chain A, Ancestral Corticiod Receptor In Complex With Doc
Length = 249
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ ++ LA + + S V+WA+ +P F +L + DQ+ L++ W L + S
Sbjct: 32 LSSLNRLAGKQMVSVVKWAKALPGFRNLHLDDQMTLIQYSWMSLMAFSLGWRSYKHTNGQ 91
Query: 58 -LHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L+ AP L + M + +R ++ +L+ V E+ C+K ++L +
Sbjct: 92 MLYFAPDLI---FNEERMQQSAMYDLCQGMRQISQEFVRLQ---VTYEEFLCMKVLLLLS 145
Query: 117 T 117
T
Sbjct: 146 T 146
>pdb|2NXX|E Chain E, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|F Chain F, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|G Chain G, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
pdb|2NXX|H Chain H, Crystal Structure Of The Ligand-Binding Domains Of The
T.Castaneum (Coleoptera) Heterodimer Ecrusp Bound To
Ponasterone A
Length = 248
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD 77
VE+A+ +P F L DQ+ALL+ SE+ + ++ + +L ++ P + D
Sbjct: 69 VEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMAR-RYDVQTDSILF---VNNQPYSRD 124
Query: 78 --RVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSA 135
+ + I + ++ VD+AEY+ L AIV+F+ L++ V+
Sbjct: 125 SYNLAGMGETIEDLLHFCRTMYSMRVDNAEYALLTAIVIFSE-----RPALIEGWKVEKI 179
Query: 136 EYSCLKAIVLFTTGKRMFGKPLP 158
+ L+A+ + +R KP P
Sbjct: 180 QEIYLEALRAYVDNRR---KPKP 199
>pdb|2LBD|A Chain A, Ligand-Binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To All-Trans Retinoic Acid
pdb|3LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To 9-cis Retinoic Acid
pdb|4LBD|A Chain A, Ligand-binding Domain Of The Human Retinoic Acid Receptor
Gamma Bound To The Synthetic Agonist Bms961
Length = 267
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 18/120 (15%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVL------NASQCSMP 57
D ELA + + VE+A+ +P F L + DQ+ LL+ ++ +L Q +M
Sbjct: 72 DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMT 131
Query: 58 LHVAPLLAAAGLHASPMA--ADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L +H + D V AF +L L +D E L AI L
Sbjct: 132 FSDGLTLNRTQMHNAGFGPLTDLVFAF----------AGQLLPLEMDDTETGLLSAICLI 181
>pdb|3VHU|A Chain A, Mineralocorticoid Receptor Ligand-Binding Domain With
Spironolactone
Length = 294
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ + LA + + V+WA+ +P F +L + DQ+ L++ W L S S
Sbjct: 76 LSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQ 135
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + M I + + L + EY+ +K ++L
Sbjct: 136 FLYFAPDLVFNEEKMHQSAMY--ELCQGMHQISL------QFVRLQLTFEEYTIMKVLLL 187
Query: 115 FTT 117
+T
Sbjct: 188 LST 190
>pdb|3VHV|A Chain A, Mineralocorticoid Receptor Ligand-Binding Domain With
Non-Steroidal Antagonist
Length = 260
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ + LA + + V+WA+ +P F +L + DQ+ L++ W L S S
Sbjct: 42 LSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQ 101
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + M I + + L + EY+ +K ++L
Sbjct: 102 FLYFAPDLVFNEEKMHQSAMY--ELCQGMHQISL------QFVRLQLTFEEYTIMKVLLL 153
Query: 115 FTT 117
+T
Sbjct: 154 LST 156
>pdb|2AA6|A Chain A, Mineralocorticoid Receptor S810l Mutant With Bound
Progesterone
pdb|2AA6|B Chain B, Mineralocorticoid Receptor S810l Mutant With Bound
Progesterone
pdb|2AAX|A Chain A, Mineralocorticoid Receptor Double Mutant With Bound
Cortisone
pdb|2AAX|B Chain B, Mineralocorticoid Receptor Double Mutant With Bound
Cortisone
pdb|2AB2|A Chain A, Mineralocorticoid Receptor Double Mutant With Bound
Spironolactone
pdb|2AB2|B Chain B, Mineralocorticoid Receptor Double Mutant With Bound
Spironolactone
Length = 275
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ + LA + + V+WA+ +P F +L + DQ+ L++ W L S S
Sbjct: 57 LSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQ 116
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + M I + + L + EY+ +K ++L
Sbjct: 117 FLYFAPDLVFNEEKMHQSAMY--ELCQGMHQISL------QFVRLQLTFEEYTIMKVLLL 168
Query: 115 FTT 117
+T
Sbjct: 169 LST 171
>pdb|1FCX|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Bms184394
pdb|1FCZ|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Panagonist Retinoid
Bms181156
pdb|1FD0|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The Rargamma-Selective
Retinoid Sr11254
Length = 235
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 18/120 (15%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVL------NASQCSMP 57
D ELA + + VE+A+ +P F L + DQ+ LL+ ++ +L Q +M
Sbjct: 46 DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMT 105
Query: 58 LHVAPLLAAAGLHASPMA--ADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L +H + D V AF +L L +D E L AI L
Sbjct: 106 FSDGLTLNRTQMHNAGFGPLTDLVFAF----------AGQLLPLEMDDTETGLLSAICLI 155
>pdb|1FCY|A Chain A, Isotype Selectivity Of The Human Retinoic Acid Nuclear
Receptor Hrar: The Complex With The RarbetaGAMMA-
Selective Retinoid Cd564
Length = 236
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 18/120 (15%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVL------NASQCSMP 57
D ELA + + VE+A+ +P F L + DQ+ LL+ ++ +L Q +M
Sbjct: 47 DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMT 106
Query: 58 LHVAPLLAAAGLHASPMA--ADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L +H + D V AF +L L +D E L AI L
Sbjct: 107 FSDGLTLNRTQMHNAGFGPLTDLVFAF----------AGQLLPLEMDDTETGLLSAICLI 156
>pdb|1EXA|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Active
R-Enantiomer Bms270394.
pdb|1EXX|A Chain A, Enantiomer Discrimination Illustrated By Crystal
Structures Of The Human Retinoic Acid Receptor Hrargamma
Ligand Binding Domain: The Complex With The Inactive
S-Enantiomer Bms270395
Length = 246
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 18/120 (15%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVL------NASQCSMP 57
D ELA + + VE+A+ +P F L + DQ+ LL+ ++ +L Q +M
Sbjct: 51 DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMT 110
Query: 58 LHVAPLLAAAGLHASPMA--ADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
L +H + D V AF +L L +D E L AI L
Sbjct: 111 FSDGLTLNRTQMHNAGFGPLTDLVFAF----------AGQLLPLEMDDTETGLLSAICLI 160
>pdb|2AA2|A Chain A, Mineralocorticoid Receptor With Bound Aldosterone
pdb|2AA5|A Chain A, Mineralocorticoid Receptor With Bound Progesterone
pdb|2AA5|B Chain B, Mineralocorticoid Receptor With Bound Progesterone
pdb|2AA7|A Chain A, Mineralocorticoid Receptor With Bound Deoxycorticosterone
Length = 275
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSEL--FVLN----ASQCSM 56
+ + LA + + V+WA+ +P F +L + DQ+ L++ W L F L+ S
Sbjct: 57 LSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLSSFALSWRSYKHTNSQ 116
Query: 57 PLHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + M I + + L + EY+ +K ++L
Sbjct: 117 FLYFAPDLVFNEEKMHQSAMY--ELCQGMHQISL------QFVRLQLTFEEYTIMKVLLL 168
Query: 115 FTT 117
+T
Sbjct: 169 LST 171
>pdb|2A3I|A Chain A, Structural And Biochemical Mechanisms For The Specificity
Of Hormone Binding And Coactivator Assembly By
Mineralocorticoid Receptor
Length = 253
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSEL--FVLN----ASQCSM 56
+ + LA + + V+WA+ +P F +L + DQ+ L++ W L F L+ S
Sbjct: 35 LSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLSSFALSWRSYKHTNSQ 94
Query: 57 PLHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + M I + + L + EY+ +K ++L
Sbjct: 95 FLYFAPDLVFNEEKMHQSAMY--ELCQGMHQISL------QFVRLQLTFEEYTIMKVLLL 146
Query: 115 FTT 117
+T
Sbjct: 147 LST 149
>pdb|1Z5X|E Chain E, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 310
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD 77
VE+++ +P F L DQ+ALL+ SE+ + ++ + L A +
Sbjct: 133 VEFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARRYDAETDSILFATNQPYTRESYT- 191
Query: 78 RVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
V D + + A+ VD+AEY+ L AIV+F+
Sbjct: 192 -VAGMGDTVEDLLRFCRHMCAMKVDNAEYALLTAIVIFS 229
>pdb|2OAX|A Chain A, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|B Chain B, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|C Chain C, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|D Chain D, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|E Chain E, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
pdb|2OAX|F Chain F, Crystal Structure Of The S810l Mutant Mineralocorticoid
Receptor Associated With Sc9420
Length = 256
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ + LA + + V+WA+ +P F +L + DQ+ L++ W L S S
Sbjct: 38 LSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMCLLSFALSWRSYKHTNSQ 97
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + M I + + L + EY+ +K ++L
Sbjct: 98 FLYFAPDLVFNEEKMHQSAMY--ELCQGMHQISL------QFVRLQLTFEEYTIMKVLLL 149
Query: 115 FTT 117
+T
Sbjct: 150 LST 152
>pdb|1Y9R|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1Y9R|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
pdb|1YA3|C Chain C, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Progesterone And
Harboring The S810l Mutation Responsible For A Severe
Form Of Hypertension
Length = 255
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ + LA + + V+WA+ +P F +L + DQ+ L++ W L S S
Sbjct: 37 LSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMCLLSFALSWRSYKHTNSQ 96
Query: 58 -LHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + M I + + L + EY+ +K ++L
Sbjct: 97 FLYFAPDLVFNEEKMHQSAMY--ELCQGMHQISL------QFVRLQLTFEEYTIMKVLLL 148
Query: 115 FTT 117
+T
Sbjct: 149 LST 151
>pdb|2ABI|A Chain A, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
pdb|2ABI|B Chain B, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
pdb|2ABI|C Chain C, Crystal Structure Of The Human Mineralocorticoid Receptor
Ligand-Binding Domain Bound To Deoxycorticosterone
Length = 256
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSEL--FVLN----ASQCSM 56
+ + LA + + V+WA+ +P F +L + DQ+ L++ W L F L+ S
Sbjct: 38 LSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMCLSSFALSWRSYKHTNSQ 97
Query: 57 PLHVAPLLA--AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
L+ AP L +H S M + M I + + L + EY+ +K ++L
Sbjct: 98 FLYFAPDLVFNEEKMHQSAMY--ELCQGMHQISL------QFVRLQLTFEEYTIMKVLLL 149
Query: 115 FTT 117
+T
Sbjct: 150 LST 152
>pdb|2V0V|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|B Chain B, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|C Chain C, Crystal Structure Of Rev-Erb Beta
pdb|2V0V|D Chain D, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELFVL------NASQCSMPLHVAPLLAAAGLHA 71
VE+A+ IP F DL DQV LL+ E+ ++ +A + ++ + + LH+
Sbjct: 32 VEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLGSKKYSVDDLHS 91
Query: 72 SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
M A D + E EKL AL + E S A+VL + +
Sbjct: 92 --MGAG------DLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADR 131
>pdb|2V7C|A Chain A, Crystal Structure Of Rev-Erb Beta
pdb|2V7C|B Chain B, Crystal Structure Of Rev-Erb Beta
Length = 194
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELF------VLNASQCSMPLHVAPLLAAAGLHA 71
VE+A+ IP F DL DQV LL+ E+ + +A + ++ + LH
Sbjct: 32 VEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFASLFDAKERTVTFLSGKKYSVDDLH- 90
Query: 72 SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
S A D + + E EKL AL + E S A+VL + +
Sbjct: 91 SXGAGDLLNSXF-------EFSEKLNALQLSDEEXSLFTAVVLVSADR 131
>pdb|3F5C|B Chain B, Structure Of Dax-1:lrh-1 Complex
pdb|3F5C|C Chain C, Structure Of Dax-1:lrh-1 Complex
Length = 268
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 19/147 (12%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
+CE A+ L + + + +P F L + Q+ L+R W+ L +L LA
Sbjct: 52 VCEAASAGLLKTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLE-------------LA 98
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAE----YSCLKAIVLFTTGKRI 121
LH M + + +++ E + + E S +L +
Sbjct: 99 QDHLHFEMMEIPETNTTQEMLTTRRQETEGPEPAEPQATEQPQMVSAEAGHLLPAAAVQA 158
Query: 122 FTGVLLK--ALHVDSAEYSCLKAIVLF 146
K +L++D+ EY+ LK VLF
Sbjct: 159 IKSFFFKCWSLNIDTKEYAYLKGTVLF 185
>pdb|3CQV|A Chain A, Crystal Structure Of Reverb Beta In Complex With Heme
Length = 199
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELF------VLNASQCSMPLHVAPLLAAAGLHA 71
VE+A+ IP F DL DQV LL+ E+ + +A + ++ + LH
Sbjct: 37 VEFAKRIPGFRDLSQHDQVNLLKAGTFEVLXVRFASLFDAKERTVTFLSGKKYSVDDLH- 95
Query: 72 SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
S A D + + E EKL AL + E S A+VL + +
Sbjct: 96 SXGAGDLLNSXF-------EFSEKLNALQLSDEEXSLFTAVVLVSADR 136
>pdb|2HBH|A Chain A, Crystal Structure Of Vitamin D Nuclear Receptor Ligand
Binding Domain Bound To A Locked Side-Chain Analog Of
Calcitriol And Src-1 Peptide
pdb|2HC4|A Chain A, Crystal Structure Of The Lbd Of Vdr Of Danio Rerio In
Complex With Calcitriol
pdb|2HCD|A Chain A, Crystal Structure Of The Ligand Binding Domain Of The
Vitamin D Nuclear Receptor In Complex With Gemini And A
Coactivator Peptide
pdb|3DR1|A Chain A, Side-Chain Fluorine Atoms Of Non-Steroidal Vitamin D3
Analogs Stabilize Helix 12 Of Vitamin D Receptor
pdb|3O1D|A Chain A, Structure-Function Study Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097.
pdb|3O1E|A Chain A, Structure-Function Of Gemini Derivatives With Two
Different Side Chains At C-20, Gemini-0072 And
Gemini-0097
Length = 302
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQ 53
++ +L + + + +A+ IP F DL DQ+ALL+ E+ +L ++Q
Sbjct: 106 HLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQ 154
>pdb|3N00|A Chain A, Crystal Structure Of A Deletion Mutant Of Human Reverba
Ligand Binding Domain Bound With An Ncor Id1 Peptide
Determined To 2.60a
Length = 245
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRL-VWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA 76
VE+A++IP F DL DQV LL+ + L V AS ++ L+ + A
Sbjct: 82 VEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLFNVKDQTVMFLSRTTYSLQELGA 141
Query: 77 DRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
+ D + + EKL +L + E A+VL + +
Sbjct: 142 ---MGMGDLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADR 181
>pdb|4FHH|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4FHI|A Chain A, Development Of Synthetically Accessible Non-Secosteroidal
Hybrid Molecules Combining Vitamin D Receptor Agonism
And Histone Deacetylase Inhibition
pdb|4G1D|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Y|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G1Z|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G20|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G21|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
pdb|4G2H|A Chain A, Structural Basis For The Accommodation Of Bis- And
Tris-Aromatic Derivatives In Vitamin D Nuclear Receptor
Length = 300
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQ 53
++ +L + + + +A+ IP F DL DQ+ALL+ E+ +L ++Q
Sbjct: 104 HLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQ 152
>pdb|1XLS|E Chain E, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|F Chain F, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|G Chain G, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
pdb|1XLS|H Chain H, Crystal Structure Of The Mouse CarRXR LBD HETERODIMER
Bound To Tcpobop And 9cra And A Tif2 Peptide Containg
The Third Lxxll Motifs
Length = 242
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 22/112 (19%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELF--VLNASQCSMPLHVAPLLAAAGLHASPMA 75
+++ +++P F L + DQ++LL+ E+ LN + C L P+
Sbjct: 67 IKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFC---------LQTENFFCGPLC 117
Query: 76 ---ADRVVA-----FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
D V A F++ I F + LK LH+ EY + A LF+ +
Sbjct: 118 YKMEDAVHAGFQYEFLESILHFH---KNLKGLHLQEPEYVLMAATALFSPDR 166
>pdb|1XNX|A Chain A, Crystal Structure Of Constitutive Androstane Receptor
pdb|1XNX|B Chain B, Crystal Structure Of Constitutive Androstane Receptor
Length = 256
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 22/112 (19%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELF--VLNASQCSMPLHVAPLLAAAGLHASPMA 75
+++ +++P F L + DQ++LL+ E+ LN + C L P+
Sbjct: 81 IKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFC---------LQTENFFCGPLC 131
Query: 76 ---ADRVVA-----FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
D V A F++ I F + LK LH+ EY + A LF+ +
Sbjct: 132 YKMEDAVHAGFQYEFLESILHFH---KNLKGLHLQEPEYVLMAATALFSPDR 180
>pdb|1UHL|B Chain B, Crystal Structure Of The Lxralfa-Rxrbeta Lbd Heterodimer
Length = 242
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 33/199 (16%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP------- 57
+ ELA + V++A+ +P F L DQ+ALL+ E+ +L S+ P
Sbjct: 51 HFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITF 110
Query: 58 ----LHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
+ A AGL V F++ I F + +L+ ++ AE++ L AI
Sbjct: 111 LKDFSYNREDFAKAGLQ---------VEFINPIFEFSRAMNELQ---LNDAEFALLIAIS 158
Query: 114 LFTTGKRIFTGVLLKALHVDSAEYSCLKAIVLFTT-----GKRMFGKPLPLNQHYTATIS 168
+F+ + + L V+ +++ ++A+ + + + MF + L + T+S
Sbjct: 159 IFSADR----PNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRML-MKLVSLRTLS 213
Query: 169 NVPLSSSLSTAVQRGRVPP 187
+V + +Q ++PP
Sbjct: 214 SVHSEQVFALRLQDKKLPP 232
>pdb|3IPQ|A Chain A, X-Ray Structure Of Gw3965 Synthetic Agonist Bound To The
Lxr
pdb|3IPS|A Chain A, X-Ray Structure Of Benzisoxazole Synthetic Agonist Bound
To Alpha
pdb|3IPS|B Chain B, X-Ray Structure Of Benzisoxazole Synthetic Agonist Bound
To Alpha
pdb|3IPU|A Chain A, X-Ray Structure Of Benzisoxazole Urea Synthetic Agonist
Boun Lxr-Alpha
pdb|3IPU|B Chain B, X-Ray Structure Of Benzisoxazole Urea Synthetic Agonist
Boun Lxr-Alpha
Length = 283
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 33/199 (16%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP------- 57
+ ELA + V++A+ +P F L DQ+ALL+ E+ +L S+ P
Sbjct: 92 HFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITF 151
Query: 58 ----LHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
+ A AGL V F++ I F + +L+ ++ AE++ L AI
Sbjct: 152 LKDFSYNREDFAKAGLQ---------VEFINPIFEFSRAMNELQ---LNDAEFALLIAIS 199
Query: 114 LFTTGKRIFTGVLLKALHVDSAEYSCLKAIVLFTT-----GKRMFGKPLPLNQHYTATIS 168
+F+ + + L V+ +++ ++A+ + + + MF + L + T+S
Sbjct: 200 IFSADR----PNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRML-MKLVSLRTLS 254
Query: 169 NVPLSSSLSTAVQRGRVPP 187
+V + +Q ++PP
Sbjct: 255 SVHSEQVFALRLQDKKLPP 273
>pdb|3L0E|A Chain A, X-Ray Crystal Structure Of A Potent Liver X Receptor
Modulator
Length = 253
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVL------NASQCSMPL 58
+ ELA + V++A+ +P F L DQ+ALL+ E+ +L N S+
Sbjct: 62 HFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETESITF 121
Query: 59 HVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTG 118
+ H + + V F++ I F + +L +D AEY+ L AI +F+
Sbjct: 122 LKDFTYSKDDFHRAGLQ----VEFINPIFEFS---RAMSSLGLDDAEYALLIAINIFSAD 174
Query: 119 K 119
+
Sbjct: 175 R 175
>pdb|3FC6|B Chain B, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FC6|D Chain D, Hrxralpha & Mlxralpha With An Indole Pharmacophore,
Sb786875
pdb|3FAL|B Chain B, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
pdb|3FAL|D Chain D, Humanrxr Alpha & Mouse Lxr Alpha Complexed With Retenoic
Acid And Gsk2186
Length = 266
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 23/126 (18%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP------- 57
+ ELA + V++A+ +P F L DQ+ALL+ E+ +L S+ P
Sbjct: 75 HFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITF 134
Query: 58 ----LHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
+ A AGL V F++ I F + +L+ ++ AE++ L AI
Sbjct: 135 LKDFSYNREDFAKAGLQ---------VEFINPIFEFSRAMNELQ---LNDAEFALLIAIS 182
Query: 114 LFTTGK 119
+F+ +
Sbjct: 183 IFSADR 188
>pdb|1UPV|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta
Ligand Binding Domain In Complex With A Synthetic
Agonist
pdb|1UPW|A Chain A, Crystal Structure Of The Human Liver X Receptor Beta
Ligand Binding Domain In Complex With A Synthetic
Agonist
Length = 257
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 23/126 (18%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVL-------NASQCSMP 57
+ ELA + V++A+ +P F L DQ+ALL+ E+ +L + ++C
Sbjct: 66 HFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITF 125
Query: 58 L----HVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
L + AGL V F++ I F ++ L +D AEY+ L AI
Sbjct: 126 LKDFTYSKDDFHRAGLQ---------VEFINPIFEFS---RAMRRLGLDDAEYALLIAIN 173
Query: 114 LFTTGK 119
+F+ +
Sbjct: 174 IFSADR 179
>pdb|2ACL|B Chain B, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|D Chain D, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|F Chain F, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
pdb|2ACL|H Chain H, Liver X-Receptor Alpha Ligand Binding Domain With Sb313987
Length = 244
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 84/203 (41%), Gaps = 41/203 (20%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP------- 57
+ ELA + V++A+ +P F L DQ+ALL+ E+ +L S+ P
Sbjct: 53 HFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITF 112
Query: 58 ----LHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
+ A AGL V F++ I F + L ++ AE++ L AI
Sbjct: 113 LKDFSYNREDFAKAGLQ---------VEFINPIFEFS---RAMNELQLNDAEFALLIAIS 160
Query: 114 LFTTGKRIFTGVLLKALHVDSAEYSCLKAIVLFTTGK---------RMFGKPLPLNQHYT 164
+F+ + + L V+ +++ ++A+ + + RM K + L
Sbjct: 161 IFSADR----PNVQDQLQVERLQHTYVEALHAYVSINHPHDPLMFPRMLMKLVSLR---- 212
Query: 165 ATISNVPLSSSLSTAVQRGRVPP 187
T+S+V + +Q ++PP
Sbjct: 213 -TLSSVHSEQVFALRLQDKKLPP 234
>pdb|1PQ6|A Chain A, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|B Chain B, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|C Chain C, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ6|D Chain D, Human Lxr Beta Hormone Receptor / Gw3965 Complex
pdb|1PQ9|A Chain A, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|B Chain B, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|C Chain C, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQ9|D Chain D, Human Lxr Beta Hormone Receptor Complexed With T0901317
Complex
pdb|1PQC|A Chain A, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|B Chain B, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|C Chain C, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|1PQC|D Chain D, Human Lxr Beta Hormone Receptor Complexed With T0901317
pdb|3KFC|A Chain A, Complex Structure Of Lxr With An Agonist
pdb|3KFC|B Chain B, Complex Structure Of Lxr With An Agonist
pdb|3KFC|C Chain C, Complex Structure Of Lxr With An Agonist
pdb|3KFC|D Chain D, Complex Structure Of Lxr With An Agonist
Length = 253
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 23/126 (18%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVL-------NASQCSMP 57
+ ELA + V++A+ +P F L DQ+ALL+ E+ +L + ++C
Sbjct: 62 HFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITF 121
Query: 58 L----HVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
L + AGL V F++ I F ++ L +D AEY+ L AI
Sbjct: 122 LKDFTYSKDDFHRAGLQ---------VEFINPIFEFS---RAMRRLGLDDAEYALLIAIN 169
Query: 114 LFTTGK 119
+F+ +
Sbjct: 170 IFSADR 175
>pdb|1XV9|B Chain B, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XV9|D Chain D, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid, And 5b-Pregnane-3,20-Dione.
pdb|1XVP|B Chain B, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
pdb|1XVP|D Chain D, Crystal Structure Of CarRXR HETERODIMER BOUND WITH SRC1
Peptide, Fatty Acid And Citco
Length = 246
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSEL--FVLNASQCSMPLHV 60
+ + ++ ++ +++ +++P F L + DQ++LL+ E+ VLN + C L
Sbjct: 56 VTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFC---LQT 112
Query: 61 APLLAAAGLHASPMAADRV---VAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
L L + RV V F++ + F + KL+ + EY L A+ LF+
Sbjct: 113 QNFLCGP-LRYTIEDGARVGFQVEFLELLFHFHGTLRKLQ---LQEPEYVLLAAMALFSP 168
Query: 118 GK 119
+
Sbjct: 169 DR 170
>pdb|1P8D|A Chain A, X-Ray Crystal Structure Of Lxr Ligand Binding Domain With
24(S),25- Epoxycholesterol
pdb|1P8D|B Chain B, X-Ray Crystal Structure Of Lxr Ligand Binding Domain With
24(S),25- Epoxycholesterol
Length = 250
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 23/126 (18%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNA-------SQCSMP 57
+ ELA + V++A+ +P F L DQ+ALL+ E+ +L ++C
Sbjct: 59 HFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITF 118
Query: 58 L----HVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
L + AGL V F++ I F ++ L +D AEY+ L AI
Sbjct: 119 LKDFTYSKDDFHRAGLQ---------VEFINPIFEFS---RAMRRLGLDDAEYALLIAIN 166
Query: 114 LFTTGK 119
+F+ +
Sbjct: 167 IFSADR 172
>pdb|1NAV|A Chain A, Thyroid Receptor Alpha In Complex With An Agonist
Selective For Thyroid Receptor Beta1
Length = 263
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD 77
V++A+ +P F +L DQ+ LL+ E+ L A+ P + L +G MA
Sbjct: 85 VDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDP--ESDTLTLSG----EMAVK 138
Query: 78 RVVAFMDHIRVFQEQV----EKLKALHVDSAEYSCLKAIVLFTTGK 119
R + V + + + L A ++D E + L+A++L +T +
Sbjct: 139 REQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDR 184
>pdb|3HZF|A Chain A, Structure Of Tr-alfa Bound To Selective Thyromimetic Gc-1
In C2 Space Group
Length = 269
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD 77
V++A+ +P F +L DQ+ LL+ E+ L A+ P + L +G MA
Sbjct: 89 VDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDP--ESDTLTLSG----EMAVK 142
Query: 78 RVVAFMDHIRVFQEQV----EKLKALHVDSAEYSCLKAIVLFTTGK 119
R + V + + + L A ++D E + L+A++L +T +
Sbjct: 143 REQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDR 188
>pdb|2H79|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In
Orthorhombic Space Group
Length = 269
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD 77
V++A+ +P F +L DQ+ LL+ E+ L A+ P + L +G MA
Sbjct: 89 VDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDP--ESDTLTLSG----EMAVK 142
Query: 78 RVVAFMDHIRVFQEQV----EKLKALHVDSAEYSCLKAIVLFTTGK 119
R + V + + + L A ++D E + L+A++L +T +
Sbjct: 143 REQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDR 188
>pdb|2H77|A Chain A, Crystal Structure Of Human Tr Alpha Bound T3 In Monoclinic
Space Group
Length = 269
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD 77
V++A+ +P F +L DQ+ LL+ E+ L A+ P + L +G MA
Sbjct: 89 VDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDP--ESDTLTLSG----EMAVK 142
Query: 78 RVVAFMDHIRVFQEQV----EKLKALHVDSAEYSCLKAIVLFTTGK 119
R + V + + + L A ++D E + L+A++L +T +
Sbjct: 143 REQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDR 188
>pdb|4DK8|A Chain A, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Partial Agonist 5
pdb|4DK8|C Chain C, Crystal Structure Of Lxr Ligand Binding Domain In Complex
With Partial Agonist 5
Length = 247
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 23/126 (18%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVL-------NASQCSMP 57
+ ELA + V++A+ +P F L DQ+ALL+ E+ +L + ++C
Sbjct: 56 HFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITF 115
Query: 58 L----HVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIV 113
L + AGL V F++ I F ++ L +D AEY+ L AI
Sbjct: 116 LKDFTYSKDDFHRAGLQ---------VEFINPIFEFS---RAMRRLGLDDAEYALLIAIN 163
Query: 114 LFTTGK 119
+F+ +
Sbjct: 164 IFSADR 169
>pdb|3JZB|A Chain A, Crystal Structure Of Tr-Alfa Bound To The Selective
Thyromimetic Triac
pdb|3ILZ|A Chain A, Structure Of Tr-Alfa Bound To Selective Thyromimetic Gc-1
In Space Group
Length = 267
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD 77
V++A+ +P F +L DQ+ LL+ E+ L A+ P + L +G MA
Sbjct: 87 VDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDP--ESDTLTLSG----EMAVK 140
Query: 78 RVVAFMDHIRVFQEQV----EKLKALHVDSAEYSCLKAIVLFTTGK 119
R + V + + + L A ++D E + L+A++L +T +
Sbjct: 141 REQLKNGGLGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDR 186
>pdb|4A3U|A Chain A, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
pdb|4A3U|B Chain B, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
Length = 358
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 150 KRMFGKPLPLNQHYTATISNVPLSSSLSTAVQRGR 184
+++F PL LNQ YT + L S ++ A+ GR
Sbjct: 282 RKVFKPPLVLNQDYTFETAQAALDSGVADAISFGR 316
>pdb|3UVV|A Chain A, Crystal Structure Of The Ligand Binding Domains Of The
Thyroid Receptor:retinoid X Receptor Complexed With
3,3',5 Triiodo-L- Thyronine And 9-Cis Retinoic Acid
Length = 265
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 18 VEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD 77
V++A+ +P F +L DQ+ LL+ E+ L A+ P + L +G MA
Sbjct: 85 VDFAKKLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDP--ESETLTLSG----EMAVK 138
Query: 78 RVVAFMDHIRVFQEQV----EKLKALHVDSAEYSCLKAIVLFTTGK 119
R + V + + + L A ++D E + L+A++L ++ +
Sbjct: 139 REQLKNGGLGVVSDAIFDLGKSLSAFNLDDTEVALLQAVLLMSSDR 184
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 46 LFVLNASQ------CSMPLHVAPLLAAAG----LHASPMAADRVVAFMDHIRVFQEQVEK 95
L+ LNAS C +P + L + L A P +R++A +H+ E +
Sbjct: 299 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQN 358
Query: 96 LKALHVDSAEYSCLK 110
LK LHV EY+ L+
Sbjct: 359 LKQLHV---EYNPLR 370
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,742,540
Number of Sequences: 62578
Number of extensions: 266270
Number of successful extensions: 1282
Number of sequences better than 100.0: 209
Number of HSP's better than 100.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 426
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)