BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1615
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P16376|7UP2_DROME Steroid receptor seven-up, isoform A OS=Drosophila melanogaster
GN=svp PE=2 SV=3
Length = 746
Score = 244 bits (624), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 116/119 (97%), Positives = 119/119 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 336 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 395
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 119
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTTGK
Sbjct: 396 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTTGK 454
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 243 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIA---NGD---- 295
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 296 ---PMGIAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 351
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 352 AVEWAKNIPFFPELQ 366
>sp|P16375|7UP1_DROME Steroid receptor seven-up, isoforms B/C OS=Drosophila melanogaster
GN=svp PE=2 SV=1
Length = 543
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 114/117 (97%), Positives = 117/117 (100%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGIDNICELAARLLFSAVEWA+NIPFFP+LQVTDQVALLRLVWSELFVLNASQCSMPLHV
Sbjct: 336 MGIDNICELAARLLFSAVEWAKNIPFFPELQVTDQVALLRLVWSELFVLNASQCSMPLHV 395
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPMAADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFTT
Sbjct: 396 APLLAAAGLHASPMAADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTT 452
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 92/135 (68%), Gaps = 16/135 (11%)
Query: 158 PLNQHYTATISNVPLSSSLS-----TAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGRVPP Q L G G Q A NGD
Sbjct: 243 PIDQHHRNQCQYCRLKKCLKMGMRREAVQRGRVPPTQPGLAGMHGQYQIA---NGD---- 295
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFS 272
+ AG NGHS YLSSYISLLLRAEPYPT+RY QCMQPNNIMGIDNICELAARLLFS
Sbjct: 296 ---PMGIAGFNGHS-YLSSYISLLLRAEPYPTSRYGQCMQPNNIMGIDNICELAARLLFS 351
Query: 273 AVEWARNIPFFPDLQ 287
AVEWA+NIPFFP+LQ
Sbjct: 352 AVEWAKNIPFFPELQ 366
>sp|Q9TTR7|COT2_BOVIN COUP transcription factor 2 OS=Bos taurus GN=NR2F2 PE=2 SV=1
Length = 414
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 144 bits (363), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------SHGQFA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 172 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>sp|O09018|COT2_RAT COUP transcription factor 2 OS=Rattus norvegicus GN=Nr2f2 PE=1 SV=1
Length = 414
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 172 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>sp|P43135|COT2_MOUSE COUP transcription factor 2 OS=Mus musculus GN=Nr2f2 PE=1 SV=2
Length = 414
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 172 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>sp|P24468|COT2_HUMAN COUP transcription factor 2 OS=Homo sapiens GN=NR2F2 PE=1 SV=1
Length = 414
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 207 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 266
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 267 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 323
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 122 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 171
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 172 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 221
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 222 SAVEWARNIPFFPDLQ 237
>sp|Q60632|COT1_MOUSE COUP transcription factor 1 OS=Mus musculus GN=Nr2f1 PE=2 SV=2
Length = 422
Score = 232 bits (591), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 213 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 272
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 273 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 329
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 128 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 177
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 178 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 227
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 228 SAVEWARNIPFFPDLQ 243
>sp|P10589|COT1_HUMAN COUP transcription factor 1 OS=Homo sapiens GN=NR2F1 PE=1 SV=1
Length = 423
Score = 232 bits (591), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 214 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 273
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 274 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 330
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 129 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 178
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 179 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 228
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 229 SAVEWARNIPFFPDLQ 244
>sp|Q9TTR8|COT1_BOVIN COUP transcription factor 1 OS=Bos taurus GN=NR2F1 PE=2 SV=1
Length = 424
Score = 232 bits (591), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 215 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 274
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 275 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 331
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 130 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 179
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 180 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 229
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 230 SAVEWARNIPFFPDLQ 245
>sp|Q90733|COT2_CHICK COUP transcription factor 2 OS=Gallus gallus GN=NR2F2 PE=2 SV=1
Length = 410
Score = 232 bits (591), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 109/117 (93%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAAR+LFSAVEWARNIPFFPDLQ+TDQVALLRL WSELFVLNA+QCSMPLHV
Sbjct: 203 MGIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHV 262
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSCLKAIVLFT+
Sbjct: 263 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTS 319
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/136 (60%), Positives = 90/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q GQFA LTNGD
Sbjct: 118 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------THGQFA-LTNGDP--- 167
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LN HS YLS YISLLLRAEPYPT+R+ SQCMQPNNIMGI+NICELAAR+LF
Sbjct: 168 ---------LNCHS-YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF 217
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 218 SAVEWARNIPFFPDLQ 233
>sp|Q06725|N2F1A_DANRE Nuclear receptor subfamily 2 group F member 1-A OS=Danio rerio
GN=nr2f1a PE=2 SV=1
Length = 411
Score = 232 bits (591), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/117 (92%), Positives = 116/117 (99%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+QCSMPLHV
Sbjct: 204 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHV 263
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR+FQEQVEKLKALHVDSAEYSC+KAIVLFT+
Sbjct: 264 APLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCIKAIVLFTS 320
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 91/136 (66%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PP Q PGQ+A LTNGD
Sbjct: 119 PIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQP------NPGQYA-LTNGDP--- 168
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNGH YLS YISLLLRAEPYPT+RY SQCMQPNNIMGI+NICELAARLLF
Sbjct: 169 ---------LNGHC-YLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLF 218
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 219 SAVEWARNIPFFPDLQ 234
>sp|Q06726|NR2F5_DANRE Nuclear receptor subfamily 2 group F member 5 OS=Danio rerio
GN=nr2f5 PE=2 SV=1
Length = 403
Score = 222 bits (565), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/136 (79%), Positives = 121/136 (88%), Gaps = 4/136 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWA+NIPFFPDLQ+ DQVALLR+ WSELFVLNA+QCSMPLHV
Sbjct: 182 MGIENICELAARLLFSAVEWAKNIPFFPDLQLMDQVALLRMSWSELFVLNAAQCSMPLHV 241
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
APLLAAAGLHASPM+A+RVVAFMDHIRVFQEQVEKLKAL VD+AEYSCLK+IVLFT+
Sbjct: 242 APLLAAAGLHASPMSAERVVAFMDHIRVFQEQVEKLKALQVDTAEYSCLKSIVLFTSDAM 301
Query: 121 IFTGVLLKALHVDSAE 136
+ V HV+S +
Sbjct: 302 GLSDV----AHVESIQ 313
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/139 (52%), Positives = 87/139 (62%), Gaps = 26/139 (18%)
Query: 155 KPLPLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDS 209
+ P++QH+ L L AVQRGR+ +QS PGQ+ L+NG
Sbjct: 94 RDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMSNSQS------SPGQY--LSNGSD 145
Query: 210 ASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAAR 268
NG YLS +ISLLLRAEPYPT+RY +QCMQ NN+MGI+NICELAAR
Sbjct: 146 P-----------YNGQP-YLSGFISLLLRAEPYPTSRYGAQCMQSNNLMGIENICELAAR 193
Query: 269 LLFSAVEWARNIPFFPDLQ 287
LLFSAVEWA+NIPFFPDLQ
Sbjct: 194 LLFSAVEWAKNIPFFPDLQ 212
>sp|Q6PH18|N2F1B_DANRE Nuclear receptor subfamily 2 group F member 1-B OS=Danio rerio
GN=nr2f1b PE=2 SV=1
Length = 389
Score = 221 bits (564), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 106/117 (90%), Positives = 112/117 (95%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
MGI+NICELAARLLFSAVEWARNIPFFPDLQ+TDQV+LLRL WSELFVLNA+Q SMPLHV
Sbjct: 182 MGIENICELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQSSMPLHV 241
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
APLLAAAGLHASPM+ADRVVAFMDHIR FQEQVEKLKAL VDSAEYSC KAIVLFT+
Sbjct: 242 APLLAAAGLHASPMSADRVVAFMDHIRFFQEQVEKLKALQVDSAEYSCAKAIVLFTS 298
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 86/136 (63%), Gaps = 26/136 (19%)
Query: 158 PLNQHYTATISNVPLSSSLST-----AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASA 212
P++QH+ L L AVQRGR+PPNQ P +A LTNGD
Sbjct: 97 PVDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPNQP------NPSHYA-LTNGDH--- 146
Query: 213 ASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLF 271
LNG YLS YISLLLRAEPYP +RY +QCMQ NIMGI+NICELAARLLF
Sbjct: 147 ---------LNGQC-YLSGYISLLLRAEPYPASRYGNQCMQSGNIMGIENICELAARLLF 196
Query: 272 SAVEWARNIPFFPDLQ 287
SAVEWARNIPFFPDLQ
Sbjct: 197 SAVEWARNIPFFPDLQ 212
>sp|O09017|NR2F6_RAT Nuclear receptor subfamily 2 group F member 6 OS=Rattus norvegicus
GN=Nr2f6 PE=2 SV=1
Length = 390
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 97/116 (83%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L DQV LLRL WSELFVLNA+Q +PLH
Sbjct: 184 LGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVGLLRLSWSELFVLNAAQAPVPLHT 243
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA PMAA+R VAFMD +R FQEQV+KL L VD+AEY CLKAI LFT
Sbjct: 244 APLLAAAGLHAGPMAAERAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFT 299
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 212 AASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLL 270
AA + AAG+ + +S I+ LLRAEPYP A ++GIDN+CELAARLL
Sbjct: 140 AACSPPGAAGVEPFAGPPVSELIAQLLRAEPYPAAGRFGGG--GAVLGIDNVCELAARLL 197
Query: 271 FSAVEWARNIPFFPDL 286
FS VEWAR+ PFFP+L
Sbjct: 198 FSTVEWARHAPFFPEL 213
>sp|P10588|NR2F6_HUMAN Nuclear receptor subfamily 2 group F member 6 OS=Homo sapiens
GN=NR2F6 PE=1 SV=2
Length = 404
Score = 160 bits (406), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 89/114 (78%), Positives = 99/114 (86%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
IDN+CELAARLLFS VEWAR+ PFFP+L V DQVALLRL WSELFVLNA+Q ++PLH AP
Sbjct: 199 IDNVCELAARLLFSTVEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAP 258
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VDSAEY CLKAI LFT
Sbjct: 259 LLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFT 312
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 64/111 (57%), Gaps = 12/111 (10%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLR 238
AVQRGR+P + LPG + A ++G +A AA+A+ G +S I+ LLR
Sbjct: 125 AVQRGRIPHS---LPGAV------AASSGSPPGSALAAVASGGDLFPGQPVSELIAQLLR 175
Query: 239 AEPYPTARYSQCMQPNNIMG---IDNICELAARLLFSAVEWARNIPFFPDL 286
AEPYP A IDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 176 AEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 226
>sp|P43136|NR2F6_MOUSE Nuclear receptor subfamily 2 group F member 6 OS=Mus musculus
GN=Nr2f6 PE=1 SV=2
Length = 390
Score = 160 bits (406), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 88/116 (75%), Positives = 100/116 (86%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+GIDN+CELAARLLFS VEWAR+ PFFP+L DQVALLRL WSELFVLNA+Q ++PLH
Sbjct: 184 LGIDNVCELAARLLFSTVEWARHAPFFPELPAADQVALLRLSWSELFVLNAAQAALPLHT 243
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
APLLAAAGLHA+PMAA+R VAFMD +R FQEQV+KL L VD+AEY CLKAI LFT
Sbjct: 244 APLLAAAGLHAAPMAAERAVAFMDQVRAFQEQVDKLGRLQVDAAEYGCLKAIALFT 299
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 60/109 (55%), Gaps = 22/109 (20%)
Query: 179 AVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLL 237
AVQRGR+P LPG AA + A G+ + +S I+ LL
Sbjct: 126 AVQRGRIP---HALPG----------------PAACSPPGATGVEPFTGPPVSELIAQLL 166
Query: 238 RAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
RAEPYP A ++GIDN+CELAARLLFS VEWAR+ PFFP+L
Sbjct: 167 RAEPYPAAGRFGGG--GAVLGIDNVCELAARLLFSTVEWARHAPFFPEL 213
>sp|Q9Y5X4|NR2E3_HUMAN Photoreceptor-specific nuclear receptor OS=Homo sapiens GN=NR2E3
PE=1 SV=1
Length = 410
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 73/119 (61%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
G+D+I E +ARLLF AV+WA+N+P F L DQV LL WSELF+L A Q S+PL
Sbjct: 216 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSC 275
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
PLLA A+ A R+ RV QE + + +AL VD E++C+KA+VLF R
Sbjct: 276 PLLAPPEASAAGGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETR 334
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 258 GIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
G+D+I E +ARLLF AV+WA+N+P F L R V
Sbjct: 216 GLDSIHETSARLLFMAVKWAKNLPVFSSLPFRDQV 250
>sp|Q9TTF0|NR2E3_BOVIN Photoreceptor-specific nuclear receptor OS=Bos taurus GN=NR2E3 PE=1
SV=2
Length = 411
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D+I E +ARLLF AV+WA+N+P F +L DQV LL WSELF+L A Q S+PL P
Sbjct: 218 LDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWSELFLLGAIQWSLPLDNCP 277
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LLA A + R+V R+ QE + + +AL VD E++C+KA+VLF R
Sbjct: 278 LLALPEASAGGSSQGRLVLASAETRILQETISRFRALAVDPTEFACMKALVLFKPETR 335
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+D+I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 218 LDSIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 251
>sp|Q9YGL3|NR2E1_ORYLA Nuclear receptor subfamily 2 group E member 1 OS=Oryzias latipes
GN=nr2e1 PE=2 SV=1
Length = 396
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 75/115 (65%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L ++DQ+ LL W ELFVL +Q ++P+
Sbjct: 191 VATESVCESAARLLFMSIKWAKSVPAFSTLPLSDQLILLEDAWRELFVLGIAQWAIPVDS 250
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +GL++ M A R+ M I+ QE V + + + +D+ E++CLK IV F
Sbjct: 251 TTLLAVSGLNSENMEAQRMNKIMAEIQALQEVVTRFRQMRLDATEFACLKCIVTF 305
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDL 286
+ +++CE AARLLF +++WA+++P F L
Sbjct: 191 VATESVCESAARLLFMSIKWAKSVPAFSTL 220
>sp|Q9QXZ7|NR2E3_MOUSE Photoreceptor-specific nuclear receptor OS=Mus musculus GN=Nr2e3
PE=1 SV=1
Length = 395
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+D I E +ARLLF AV+WA+N+P F +L DQV LL W+ELF+L A Q S+PL P
Sbjct: 204 LDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQVILLEEAWNELFLLGAIQWSLPLDSCP 263
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LLA AS + R+ R QE + + +AL VD E++CLKA+VLF R
Sbjct: 264 LLAPP--EASGSSQGRLALASAETRFLQETISRFRALAVDPTEFACLKALVLFKPETR 319
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
P + +D I E +ARLLF AV+WA+N+P F +L R V
Sbjct: 198 PASPCSLDGIHETSARLLFMAVKWAKNLPVFSNLPFRDQV 237
>sp|P70052|NR2E1_XENLA Nuclear receptor subfamily 2 group E member 1 OS=Xenopus laevis
GN=nr2e1 PE=2 SV=1
Length = 386
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 77/125 (61%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
+++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+ + L
Sbjct: 183 ESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDASTL 242
Query: 64 LAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFT 123
LA +G++ + ++ + I+ Q+ V + + L +D+ E++CLK IV F G +
Sbjct: 243 LAVSGMNNENTESPKLNKIISEIQALQDVVSRFRQLRLDATEFACLKCIVTFKAGVSTHS 302
Query: 124 GVLLK 128
G L+
Sbjct: 303 GSELR 307
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 260 DNICELAARLLFSAVEWARNIPFFPDL 286
+++CE AARLLF +++WA+++P F L
Sbjct: 183 ESVCESAARLLFMSIKWAKSVPAFSTL 209
>sp|Q91379|NR2E1_CHICK Nuclear receptor subfamily 2 group E member 1 OS=Gallus gallus
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDL 286
+ +++CE AARLLF +++WA+++P F L
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTL 209
>sp|Q64104|NR2E1_MOUSE Nuclear receptor subfamily 2 group E member 1 OS=Mus musculus
GN=Nr2e1 PE=1 SV=1
Length = 385
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNTDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDL 286
+ +++CE AARLLF +++WA+++P F L
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTL 209
>sp|Q9Y466|NR2E1_HUMAN Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens
GN=NR2E1 PE=2 SV=1
Length = 385
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 72/115 (62%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ +++CE AARLLF +++WA+++P F L + DQ+ LL W ELFVL +Q ++P+
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDA 239
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LLA +G++ + ++ + I+ QE V + + L +D+ E++CLK IV F
Sbjct: 240 NTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTF 294
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDL 286
+ +++CE AARLLF +++WA+++P F L
Sbjct: 180 VATESVCESAARLLFMSIKWAKSVPAFSTL 209
>sp|Q28CK1|NR2C1_XENTR Nuclear receptor subfamily 2 group C member 1 OS=Xenopus tropicalis
GN=nr2c1 PE=2 SV=1
Length = 636
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/122 (40%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 421 LNVHYICESASRLLFLSMHWARSIPSFQSLGQENSISLVKACWNELFSLGLAQCCQVMNV 480
Query: 61 APLLAA--AGLHAS----PMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+LAA LH S ++AD+V MDHI QE + L VD EY+ LKAI L
Sbjct: 481 ETILAAFVNHLHNSMQHDKLSADKVKLVMDHIFKLQEFCNSMVKLSVDGYEYAYLKAIAL 540
Query: 115 FT 116
F+
Sbjct: 541 FS 542
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+ + ICE A+RLLF ++ WAR+IP F L + +
Sbjct: 421 LNVHYICESASRLLFLSMHWARSIPSFQSLGQENSI 456
>sp|Q26622|SHR2_STRPU Orphan steroid hormone receptor 2 OS=Strongylocentrotus purpuratus
GN=SHR2 PE=1 SV=1
Length = 583
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR++P F L ++++ WSELF L +QC+ + +
Sbjct: 361 LNVHYICESASRLLFLSMHWARSLPAFQVLSADTHTSMVQKCWSELFTLGLAQCAQAMAL 420
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +L A L ++ADRV A M+HI QE V L VD E++ LK IVL
Sbjct: 421 STILTAIVNHLQTSLQQDKLSADRVKAVMEHIWKLQEFVTTTSKLDVDQTEFAYLKTIVL 480
Query: 115 FT 116
F+
Sbjct: 481 FS 482
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 197 GPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCMQPNNI 256
G + L+ SA+ S+ + L+ S LS + P P ++
Sbjct: 312 GDSEAGDLSIDQSANGGSSEVELVKLD--SPMLSDHHMQFKLTTPSPMPQF--------- 360
Query: 257 MGIDNICELAARLLFSAVEWARNIPFF 283
+ + ICE A+RLLF ++ WAR++P F
Sbjct: 361 LNVHYICESASRLLFLSMHWARSLPAF 387
>sp|P55094|NR2C2_RAT Nuclear receptor subfamily 2 group C member 2 OS=Rattus norvegicus
GN=Nr2c2 PE=2 SV=1
Length = 596
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGHEYAYLKAIVL 500
Query: 115 FTTGKRIFTGV 125
F+ TG
Sbjct: 501 FSPDHPGLTGT 511
Score = 35.8 bits (81), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDL 286
+ + ICE A+RLLF ++ WAR+IP F L
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQAL 410
>sp|P51129|RXRG_XENLA Retinoic acid receptor RXR-gamma OS=Xenopus laevis GN=rxrg PE=2
SV=1
Length = 470
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP+F DL + DQV LLR W+EL + + S S+ +
Sbjct: 273 VTNICHAADKQLFTLVEWAKRIPYFSDLPLEDQVILLRAGWNELLIASFSHRSVSVQDGI 332
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 333 LL-ATGLHVHRSSAHNAGVGSIFDRVLTELVSKMKDMDMDKSELGCLRAIVLFN 385
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC A + LF+ VEWA+ IP+F DL
Sbjct: 273 VTNICHAADKQLFTLVEWAKRIPYFSDL 300
>sp|P49117|NR2C2_MOUSE Nuclear receptor subfamily 2 group C member 2 OS=Mus musculus
GN=Nr2c2 PE=1 SV=1
Length = 596
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FTTGKRIFTGV 125
F+ TG
Sbjct: 501 FSPDHPGLTGT 511
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDL 286
+ + ICE A+RLLF ++ WAR+IP F L
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQAL 410
>sp|P49116|NR2C2_HUMAN Nuclear receptor subfamily 2 group C member 2 OS=Homo sapiens
GN=NR2C2 PE=1 SV=1
Length = 596
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L +L+R W+ELF L +QC+ + +
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSL 440
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+ +LAA + ++ DR+ M+HI QE + L +D EY+ LKAIVL
Sbjct: 441 STILAAIVNHLQNSIQEDKLSGDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVL 500
Query: 115 FT 116
F+
Sbjct: 501 FS 502
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFF 283
+ + ICE A+RLLF ++ WAR+IP F
Sbjct: 381 LNVHYICESASRLLFLSMHWARSIPAF 407
>sp|Q6GN21|N2C1A_XENLA Nuclear receptor subfamily 2 group C member 1-A OS=Xenopus laevis
GN=nr2c1-a PE=2 SV=1
Length = 637
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L + ++L++ W+ELF L +QCS ++V
Sbjct: 422 LNVHYICESASRLLFLSMHWARSIPSFQSLGQENSISLVKACWNELFSLGLAQCSQVMNV 481
Query: 61 APLLAA------AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+LAA + +++D+V DHI QE + L VD EY+ LKAI L
Sbjct: 482 ETILAAFVNHLQNSMQHDKLSSDKVKLVTDHIFKLQEFCNSMVKLCVDGYEYAYLKAIAL 541
Query: 115 FT 116
F+
Sbjct: 542 FS 543
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+ + ICE A+RLLF ++ WAR+IP F L + +
Sbjct: 422 LNVHYICESASRLLFLSMHWARSIPSFQSLGQENSI 457
>sp|Q0VC20|RXRG_BOVIN Retinoic acid receptor RXR-gamma OS=Bos taurus GN=RXRG PE=2 SV=1
Length = 463
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 377
Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC A + LF+ VEWA+ IP F DL
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDL 293
>sp|Q0GFF6|RXRG_PIG Retinoic acid receptor RXR-gamma OS=Sus scrofa GN=RXRG PE=2 SV=2
Length = 463
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLF 377
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 189 QSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSY-LSSYISLLLRAEPYPTARY 247
Q CL G+ A S A A+ +GH + + L EP +
Sbjct: 197 QKCLVMGMKREAVQEERQRSRERAESEAECAS--SGHEDMPVERILEAELAVEPKTESYG 254
Query: 248 SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 255 DMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>sp|Q5REL6|RXRG_PONAB Retinoic acid receptor RXR-gamma OS=Pongo abelii GN=RXRG PE=2 SV=1
Length = 463
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 38.9 bits (89), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 244 LAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>sp|P48443|RXRG_HUMAN Retinoic acid receptor RXR-gamma OS=Homo sapiens GN=RXRG PE=1 SV=1
Length = 463
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP + M+ + + NIC A + LF+ VEWA+ IP F DL
Sbjct: 244 LAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 293
>sp|P28701|RXRG_CHICK Retinoic acid receptor RXR-gamma OS=Gallus gallus GN=RXRG PE=2 SV=1
Length = 467
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 329
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 330 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 382
Score = 38.5 bits (88), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC A + LF+ VEWA+ IP F DL
Sbjct: 270 VTNICHAADKQLFTLVEWAKRIPHFSDL 297
>sp|P28705|RXRG_MOUSE Retinoic acid receptor RXR-gamma OS=Mus musculus GN=Rxrg PE=2 SV=2
Length = 463
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKSELGCLRAIVLFN 378
Score = 38.5 bits (88), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC A + LF+ VEWA+ IP F DL
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDL 293
>sp|Q5BJR8|RXRG_RAT Retinoic acid receptor RXR-gamma OS=Rattus norvegicus GN=Rxrg PE=2
SV=1
Length = 463
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGI 325
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL A GLH +A RV E V K+K + +D +E CL+AIVLF
Sbjct: 326 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMRMDKSELGCLRAIVLF 377
Score = 38.5 bits (88), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC A + LF+ VEWA+ IP F DL
Sbjct: 266 VTNICHAADKQLFTLVEWAKRIPHFSDL 293
>sp|Q90416|RXRGA_DANRE Retinoic acid receptor RXR-gamma-A OS=Danio rerio GN=rxrga PE=2
SV=2
Length = 441
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 244 VTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSVTVKDGI 303
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A RV E V K++ + +D E CL+AIVLF
Sbjct: 304 LL-ATGLHVHRSSAHSAGVGSIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFN 356
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L EP A M + + NIC+ A + LF+ VEWA+ IP F DL
Sbjct: 222 LAVEPKTEAYMESSMSNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSDL 271
>sp|Q66J63|N2C1B_XENLA Nuclear receptor subfamily 2 group C member 1-B OS=Xenopus laevis
GN=nr2c1-b PE=2 SV=1
Length = 637
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
+ + ICE A+RLLF ++ WAR+IP F L + ++L++ W+ELF L +QC ++V
Sbjct: 422 LNVHYICESASRLLFLSMHWARSIPSFLSLGQENSISLVKACWNELFSLGLAQCCQVMNV 481
Query: 61 APLLAA--AGLHAS----PMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVL 114
+LAA LH S +++D+V MDHI QE + VD EY+ LKAI L
Sbjct: 482 ETILAAFVNHLHNSMQHDKLSSDKVKLVMDHIFKLQEFCNSMVKRCVDGYEYAYLKAIAL 541
Query: 115 FT 116
F+
Sbjct: 542 FS 543
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 257 MGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGV 292
+ + ICE A+RLLF ++ WAR+IP F L + +
Sbjct: 422 LNVHYICESASRLLFLSMHWARSIPSFLSLGQENSI 457
>sp|Q90415|RXRAB_DANRE Retinoic acid receptor RXR-alpha-B OS=Danio rerio GN=rxrab PE=2
SV=1
Length = 379
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 182 VTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 241
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 242 LL-ATGLHVHRNSAHTAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 294
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
PN+ + NIC+ A + LF+ VEWA+ IP F DL
Sbjct: 178 PND--PVTNICQAADKQLFTLVEWAKRIPHFSDL 209
>sp|Q6DHP9|RXRGB_DANRE Retinoic acid receptor RXR-gamma-B OS=Danio rerio GN=rxrgb PE=2
SV=1
Length = 452
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC A + LF+ VEWA+ IP F DL + DQV LLR W+EL + + S S+ +
Sbjct: 255 VTNICHAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELLIASFSHRSITVKDGI 314
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
LL GLH +A RV E V K+K + +D E CL+AIVLF
Sbjct: 315 LL-GTGLHVHRSSAHSAGVGSIFNRVLTELVSKMKDMQMDKTELGCLRAIVLF 366
Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 237 LRAEPYPTARYSQCMQPNNIMG-IDNICELAARLLFSAVEWARNIPFFPDL 286
L EP T Y++ N+ + NIC A + LF+ VEWA+ IP F DL
Sbjct: 233 LSVEPK-TETYTESSPSNSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDL 282
>sp|Q5I7G2|RXR_LYMST Retinoic acid receptor RXR OS=Lymnaea stagnalis GN=RXR PE=1 SV=1
Length = 436
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 239 VTNICQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSI-MAKDG 297
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
+L A GLH +A + RV E V K++ + +D E CL+A+VLF +
Sbjct: 298 ILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMREMKMDKTELGCLRAVVLFNPDAKGL 357
Query: 123 TGV 125
T V
Sbjct: 358 TAV 360
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 239 VTNICQAADKQLFTLVEWAKRIPHFTEL 266
>sp|Q05343|RXRA_RAT Retinoic acid receptor RXR-alpha OS=Rattus norvegicus GN=Rxra PE=2
SV=1
Length = 467
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 328
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 329 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 382
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSEL 297
>sp|P28700|RXRA_MOUSE Retinoic acid receptor RXR-alpha OS=Mus musculus GN=Rxra PE=1 SV=1
Length = 467
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 328
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 329 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 382
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 270 VTNICQAADKQLFTLVEWAKRIPHFSEL 297
>sp|P51128|RXRA_XENLA Retinoic acid receptor RXR-alpha OS=Xenopus laevis GN=rxra PE=1
SV=1
Length = 488
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 291 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 349
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 350 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 403
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 291 VTNICQAADKQLFTLVEWAKRIPHFSEL 318
>sp|P19793|RXRA_HUMAN Retinoic acid receptor RXR-alpha OS=Homo sapiens GN=RXRA PE=1 SV=1
Length = 462
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 265 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG- 323
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+L A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 324 ILLATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 377
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 265 VTNICQAADKQLFTLVEWAKRIPHFSEL 292
>sp|Q8T5C6|RXR_BIOGL Retinoic acid receptor RXR OS=Biomphalaria glabrata GN=RXR PE=1
SV=1
Length = 436
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + S S+ +
Sbjct: 239 VTNICQAADKQLFTLVEWAKRIPHFTELPLEDQVILLRAGWNELLIAGFSHRSI-MAKDG 297
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
+L A GLH +A + RV E V K++ + +D E CL+A+VLF +
Sbjct: 298 ILLATGLHVHRSSAHQAGVGTIFDRVLTELVAKMRDMKMDKTELGCLRAVVLFNPDAKGL 357
Query: 123 TGV 125
T V
Sbjct: 358 TAV 360
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 239 VTNICQAADKQLFTLVEWAKRIPHFTEL 266
>sp|A2T929|RXRAA_DANRE Retinoic acid receptor RXR-alpha-A OS=Danio rerio GN=rxraa PE=2
SV=2
Length = 430
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 233 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 292
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AIVLF
Sbjct: 293 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFN 345
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 233 VTNICQAADKQLFTLVEWAKRIPHFSEL 260
>sp|P49743|RXRB_RAT Retinoic acid receptor RXR-beta (Fragment) OS=Rattus norvegicus
GN=Rxrb PE=2 SV=1
Length = 458
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 66/116 (56%), Gaps = 5/116 (4%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F L + DQV LLR W+EL + + S S+ +
Sbjct: 261 VTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGI 320
Query: 63 LLAAAGLHASPMAADR--VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
LL A GLH +A V A D RV E V K++ + +D E CL+AI+LF
Sbjct: 321 LL-ATGLHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMRMDKTELGCLRAIILFN 373
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDL 286
+ NIC+ A + LF+ VEWA+ IP F L
Sbjct: 261 VTNICQAADKQLFTLVEWAKRIPHFSSL 288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,339,568
Number of Sequences: 539616
Number of extensions: 3973874
Number of successful extensions: 11743
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 10914
Number of HSP's gapped (non-prelim): 672
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)