Query psy1615
Match_columns 295
No_of_seqs 283 out of 1944
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 22:07:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltx_A Estrogen receptor; cons 100.0 1.7E-33 5.8E-38 242.0 15.4 179 2-185 37-233 (243)
2 3cjw_A COUP transcription fact 100.0 2.4E-33 8.1E-38 241.3 13.4 178 2-183 38-233 (244)
3 3plz_A FTZ-F1 related protein; 100.0 4.1E-33 1.4E-37 241.3 14.9 178 2-183 57-255 (257)
4 1ymt_A Steroidogenic factor 1; 100.0 1.3E-32 4.3E-37 237.0 15.6 179 1-183 45-244 (246)
5 2iz2_A FTZ-F1 alpha, nuclear h 100.0 1.3E-32 4.4E-37 236.4 14.4 178 2-184 47-243 (243)
6 3k6p_A Steroid hormone recepto 100.0 1.1E-32 3.8E-37 237.5 13.6 175 2-182 49-245 (248)
7 3p0u_A Nuclear receptor subfam 100.0 4.2E-33 1.4E-37 240.3 10.6 179 2-184 35-237 (249)
8 1fcy_A RAR-gamma-1, retinoic a 100.0 2.6E-32 8.9E-37 233.7 15.1 172 3-180 46-235 (236)
9 2e2r_A Estrogen-related recept 100.0 5E-32 1.7E-36 233.0 16.1 175 2-182 49-241 (244)
10 3tx7_B Nuclear receptor subfam 100.0 2.8E-32 9.4E-37 245.0 14.0 179 1-183 151-350 (352)
11 3oll_A Estrogen receptor beta; 100.0 2.4E-32 8.3E-37 234.4 12.8 181 3-184 35-239 (240)
12 1g2n_A Ultraspiracle protein; 100.0 5E-32 1.7E-36 235.6 14.0 178 2-184 43-256 (264)
13 3f5c_B Nuclear receptor subfam 100.0 1.4E-32 4.8E-37 238.9 10.2 177 2-182 48-266 (268)
14 1xpc_A Estrogen receptor; nucl 100.0 2E-32 6.8E-37 236.1 10.8 184 2-186 36-244 (248)
15 2nxx_A Ultraspiracle (USP, NR2 100.0 5.5E-32 1.9E-36 231.5 13.3 175 2-183 38-232 (235)
16 2ocf_A Estrogen receptor; estr 100.0 3.1E-32 1.1E-36 240.1 11.4 184 3-187 46-254 (298)
17 1xdk_B RAR-beta, retinoic acid 100.0 1.6E-31 5.3E-36 236.7 15.5 176 3-184 73-266 (303)
18 3v3e_B Nuclear receptor subfam 100.0 1.6E-31 5.4E-36 231.0 14.9 172 2-181 53-244 (257)
19 3kmr_A Retinoic acid receptor 100.0 2.4E-31 8.3E-36 231.2 15.0 174 3-182 70-261 (266)
20 1hg4_A Ultraspiracle; nuclear 100.0 3E-31 1E-35 232.6 15.2 178 2-184 48-270 (279)
21 1yye_A ER-beta, estrogen recep 100.0 7.4E-32 2.5E-36 234.8 11.1 182 3-185 33-238 (268)
22 1pdu_A DHR38, nuclear hormone 100.0 1.1E-30 3.8E-35 224.3 15.4 174 2-183 48-241 (244)
23 3b0t_A Vitamin D3 receptor; nu 100.0 4.7E-31 1.6E-35 228.3 12.4 154 2-161 57-219 (254)
24 1l2j_A Estrogen receptor beta; 100.0 2E-31 7E-36 232.4 10.1 182 3-185 61-266 (271)
25 3ilz_A Thyroid hormone recepto 100.0 6.6E-31 2.3E-35 228.7 13.2 177 2-184 71-266 (267)
26 1lbd_A RXR_LBD, retinoid X rec 100.0 8.1E-31 2.8E-35 230.2 13.8 176 2-184 84-279 (282)
27 3vi8_A Peroxisome proliferator 100.0 9.4E-31 3.2E-35 228.0 13.8 166 3-174 78-248 (273)
28 2o4j_A Vitamin D3 receptor; nu 100.0 9.9E-31 3.4E-35 230.3 13.5 177 2-184 60-260 (292)
29 2p1t_A Retinoic acid receptor 100.0 3.1E-30 1.1E-34 221.3 16.1 175 2-183 42-236 (240)
30 1sqn_A PR, progesterone recept 100.0 8.4E-31 2.9E-35 227.4 11.0 175 3-182 43-243 (261)
31 2hc4_A Vitamin D receptor; alp 100.0 2.9E-30 9.8E-35 228.2 14.6 154 2-161 103-263 (302)
32 2r40_D Ecdysone receptor, 20-h 100.0 2.8E-30 9.6E-35 224.7 13.1 173 3-183 70-263 (266)
33 1nq7_A Nuclear receptor ROR-be 100.0 2.2E-30 7.5E-35 222.7 12.1 151 3-161 52-207 (244)
34 3cqv_A Nuclear receptor subfam 100.0 1.4E-30 4.8E-35 217.3 9.8 166 3-175 22-192 (199)
35 3n00_A REV-ERBA-alpha; reverba 100.0 5E-30 1.7E-34 220.3 12.9 168 3-177 67-239 (245)
36 1xvp_B Orphan nuclear receptor 100.0 3.2E-30 1.1E-34 222.1 11.1 153 2-161 55-215 (246)
37 1ovl_A Orphan nuclear receptor 100.0 1.3E-29 4.3E-34 221.3 14.2 171 3-181 76-266 (271)
38 1n83_A Nuclear receptor ROR-al 100.0 1.1E-29 3.6E-34 221.3 13.6 173 3-183 67-261 (270)
39 1nrl_A Orphan nuclear receptor 100.0 3E-30 1E-34 228.8 9.7 172 2-182 121-313 (316)
40 3ipq_A Oxysterols receptor LXR 100.0 8.1E-30 2.8E-34 223.7 12.4 153 3-161 90-248 (283)
41 3vhv_A Mineralocorticoid recep 100.0 4.1E-30 1.4E-34 222.8 9.9 155 2-161 41-205 (260)
42 1t7r_A Androgen receptor; nucl 100.0 2.4E-30 8.1E-35 225.5 7.7 154 3-161 51-214 (269)
43 3mnp_A Glucocorticoid receptor 100.0 2.7E-30 9.3E-35 224.0 8.0 169 2-176 43-221 (261)
44 3l0l_A Nuclear receptor ROR-ga 100.0 2E-29 7E-34 217.1 12.8 168 2-178 57-227 (248)
45 1osh_A BIle acid receptor; nuc 100.0 8.4E-30 2.9E-34 217.6 9.3 150 2-161 43-198 (232)
46 1z5x_E Ecdysone receptor ligan 100.0 4.5E-29 1.5E-33 221.0 14.1 152 3-161 118-275 (310)
47 3vhu_A Mineralocorticoid recep 100.0 2E-29 6.9E-34 221.6 10.9 155 2-161 75-239 (294)
48 2nxx_E Ecdysone receptor (ECR, 100.0 4.7E-29 1.6E-33 214.9 11.5 153 2-161 53-211 (248)
49 1pzl_A Hepatocyte nuclear fact 100.0 1.9E-28 6.5E-33 209.8 14.8 176 1-183 41-236 (237)
50 3up3_A Acedaf-12; ligand bindi 100.0 5.6E-30 1.9E-34 219.6 5.2 169 2-177 42-224 (243)
51 3u9q_A Peroxisome proliferator 100.0 1.1E-28 3.7E-33 214.7 13.2 171 4-181 75-267 (269)
52 3dzy_A Retinoic acid receptor 100.0 1.8E-28 6.3E-33 228.2 15.4 173 4-183 271-463 (467)
53 3dzy_D Peroxisome proliferator 99.9 2E-27 6.8E-32 218.8 13.8 146 9-161 230-382 (419)
54 3gyt_A Nuclear hormone recepto 99.9 2.6E-27 9E-32 202.4 12.8 177 2-188 42-235 (244)
55 3dzy_A Retinoic acid receptor 99.6 3.5E-17 1.2E-21 152.3 -0.1 129 161-293 173-304 (467)
56 1lbd_A RXR_LBD, retinoid X rec 99.6 1.6E-16 5.3E-21 139.1 3.5 106 187-293 11-119 (282)
57 3dzy_D Peroxisome proliferator 99.5 8.9E-15 3E-19 134.5 2.3 39 167-208 91-129 (419)
58 3k6p_A Steroid hormone recepto 99.2 9E-12 3.1E-16 106.7 4.4 67 227-293 17-84 (248)
59 1xpc_A Estrogen receptor; nucl 99.2 1.5E-11 5.1E-16 105.4 5.5 67 227-293 4-71 (248)
60 2e2r_A Estrogen-related recept 99.1 1.3E-11 4.5E-16 105.5 3.4 67 227-293 17-84 (244)
61 3ltx_A Estrogen receptor; cons 99.1 2.2E-11 7.4E-16 104.0 4.0 67 227-293 5-72 (243)
62 3mnp_A Glucocorticoid receptor 99.1 2.1E-11 7.3E-16 105.1 3.3 66 228-293 12-78 (261)
63 1t7r_A Androgen receptor; nucl 99.1 2.2E-11 7.4E-16 105.6 3.1 67 227-293 18-85 (269)
64 3oll_A Estrogen receptor beta; 99.1 3.7E-11 1.3E-15 102.4 4.1 66 228-293 4-69 (240)
65 3vhv_A Mineralocorticoid recep 99.1 3E-11 1E-15 104.1 2.4 65 229-293 11-76 (260)
66 1sqn_A PR, progesterone recept 99.1 4.1E-11 1.4E-15 103.4 3.0 67 227-293 10-77 (261)
67 1yye_A ER-beta, estrogen recep 99.1 5.9E-11 2E-15 102.8 3.9 65 229-293 3-67 (268)
68 3cjw_A COUP transcription fact 99.0 4.7E-11 1.6E-15 102.0 2.3 66 228-293 7-73 (244)
69 1xdk_B RAR-beta, retinoic acid 99.0 9.9E-11 3.4E-15 103.2 4.4 37 257-293 71-107 (303)
70 3vhu_A Mineralocorticoid recep 99.0 1E-10 3.5E-15 102.5 3.3 64 230-293 46-110 (294)
71 1l2j_A Estrogen receptor beta; 99.0 1.2E-10 4.1E-15 101.0 3.7 67 227-293 29-95 (271)
72 1ovl_A Orphan nuclear receptor 99.0 3.8E-11 1.3E-15 104.2 0.2 39 255-293 72-110 (271)
73 2ocf_A Estrogen receptor; estr 99.0 2.1E-10 7.1E-15 100.7 4.7 67 227-293 13-80 (298)
74 1g2n_A Ultraspiracle protein; 99.0 4E-10 1.4E-14 97.3 5.2 67 227-293 6-78 (264)
75 3plz_A FTZ-F1 related protein; 98.9 2.2E-10 7.6E-15 98.5 1.9 67 227-293 15-92 (257)
76 3v3e_B Nuclear receptor subfam 98.9 2.2E-10 7.5E-15 98.5 1.6 40 254-293 49-88 (257)
77 2nxx_A Ultraspiracle (USP, NR2 98.9 1.3E-09 4.5E-14 92.4 6.2 65 227-293 9-73 (235)
78 3tx7_B Nuclear receptor subfam 98.8 1.1E-09 3.7E-14 98.1 3.8 66 228-293 111-187 (352)
79 2p1t_A Retinoic acid receptor 98.8 1.2E-09 3.9E-14 93.0 3.4 67 227-293 8-77 (240)
80 1ymt_A Steroidogenic factor 1; 98.8 2.2E-09 7.5E-14 91.7 2.6 66 228-293 7-81 (246)
81 1fcy_A RAR-gamma-1, retinoic a 98.7 3.9E-09 1.3E-13 89.6 1.9 38 256-293 43-80 (236)
82 1pdu_A DHR38, nuclear hormone 98.7 8.8E-09 3E-13 87.8 3.4 65 229-293 16-83 (244)
83 1hg4_A Ultraspiracle; nuclear 98.7 4.7E-09 1.6E-13 91.3 1.5 67 227-293 9-83 (279)
84 3f5c_B Nuclear receptor subfam 98.7 2.7E-09 9.2E-14 92.2 -0.2 39 255-293 45-83 (268)
85 3p0u_A Nuclear receptor subfam 98.6 9.8E-09 3.4E-13 87.8 2.6 38 256-293 33-70 (249)
86 3kmr_A Retinoic acid receptor 98.6 8.6E-09 3E-13 89.0 2.3 67 227-293 27-104 (266)
87 2iz2_A FTZ-F1 alpha, nuclear h 98.6 1.4E-08 4.7E-13 86.6 3.3 39 255-293 44-82 (243)
88 1osh_A BIle acid receptor; nuc 98.6 1.1E-08 3.7E-13 86.5 2.6 65 229-293 9-78 (232)
89 3gyt_A Nuclear hormone recepto 98.6 8.8E-09 3E-13 87.6 0.8 35 259-293 43-77 (244)
90 3l0l_A Nuclear receptor ROR-ga 98.6 9E-09 3.1E-13 88.0 0.6 39 255-293 54-92 (248)
91 2o4j_A Vitamin D3 receptor; nu 98.5 2.1E-08 7.2E-13 87.7 1.8 40 254-293 56-95 (292)
92 1n83_A Nuclear receptor ROR-al 98.5 2.9E-08 9.9E-13 85.9 2.4 38 256-293 64-101 (270)
93 2hc4_A Vitamin D receptor; alp 98.5 3.4E-08 1.2E-12 86.8 2.7 39 255-293 100-138 (302)
94 3vi8_A Peroxisome proliferator 98.5 3.3E-08 1.1E-12 85.6 2.5 37 257-293 76-112 (273)
95 3up3_A Acedaf-12; ligand bindi 98.5 1.5E-08 5.1E-13 86.3 0.2 35 259-293 43-77 (243)
96 3b0t_A Vitamin D3 receptor; nu 98.5 2.7E-08 9.3E-13 85.2 1.7 38 256-293 55-92 (254)
97 3n00_A REV-ERBA-alpha; reverba 98.5 2.3E-08 8E-13 85.2 0.9 38 256-293 64-101 (245)
98 1xvp_B Orphan nuclear receptor 98.5 1.1E-08 3.8E-13 87.3 -1.1 38 256-293 53-90 (246)
99 2r40_D Ecdysone receptor, 20-h 98.5 3.4E-08 1.2E-12 85.2 1.5 37 257-293 68-104 (266)
100 1nq7_A Nuclear receptor ROR-be 98.4 2.4E-08 8.4E-13 85.0 -0.3 39 255-293 48-86 (244)
101 3ipq_A Oxysterols receptor LXR 98.4 5E-08 1.7E-12 85.0 1.6 38 256-293 87-124 (283)
102 1z5x_E Ecdysone receptor ligan 98.4 6.6E-08 2.2E-12 85.2 1.7 39 255-293 114-152 (310)
103 1nrl_A Orphan nuclear receptor 98.4 3.5E-08 1.2E-12 87.1 -0.3 38 256-293 119-156 (316)
104 3ilz_A Thyroid hormone recepto 98.4 4.5E-08 1.5E-12 84.5 -0.2 39 255-293 68-106 (267)
105 2nxx_E Ecdysone receptor (ECR, 98.4 9E-08 3.1E-12 81.7 1.5 37 257-293 52-88 (248)
106 1pzl_A Hepatocyte nuclear fact 98.4 6E-08 2.1E-12 82.1 0.4 41 253-293 37-77 (237)
107 3u9q_A Peroxisome proliferator 98.2 3.7E-07 1.2E-11 78.8 1.3 35 259-293 74-109 (269)
108 1ynw_B Retinoic acid receptor 98.0 2E-07 6.9E-12 67.3 -3.8 46 160-208 38-83 (99)
109 3cbb_A HNF-4-alpha, hepatocyte 97.9 3E-07 1E-11 63.5 -3.8 43 160-205 35-77 (78)
110 1dsz_B RXR-alpha, retinoic aci 97.9 5.1E-07 1.8E-11 63.3 -2.7 42 161-205 41-82 (85)
111 1dsz_A RAR-alpha, retinoic aci 97.9 5.5E-07 1.9E-11 63.4 -2.7 44 161-207 40-83 (86)
112 2han_A Protein ultraspiracle; 97.8 6.7E-07 2.3E-11 63.9 -3.3 43 161-206 46-88 (93)
113 1cit_A NGFI-B, protein (orphan 97.8 8.6E-07 3E-11 62.8 -2.7 42 161-205 36-77 (89)
114 2lze_A A primordial catalytic 97.8 2.1E-06 7.3E-11 60.2 -0.7 41 158-201 35-75 (87)
115 1hcq_A Protein (estrogen recep 97.8 4.5E-07 1.5E-11 63.5 -4.2 43 161-206 40-82 (84)
116 2ebl_A COUP transcription fact 97.8 4E-07 1.4E-11 64.5 -4.6 45 160-207 42-86 (89)
117 1a6y_A Orphan nuclear receptor 97.8 1.2E-06 4.2E-11 62.6 -2.1 45 161-208 43-88 (94)
118 1lo1_A Steroid hormone recepto 97.7 1.2E-06 4.2E-11 63.1 -2.8 43 161-206 40-82 (98)
119 4hn5_A Glucocorticoid receptor 97.7 9.1E-07 3.1E-11 65.7 -4.2 43 161-206 65-107 (117)
120 2a66_A Orphan nuclear receptor 97.7 2.6E-06 9E-11 62.9 -2.0 45 160-207 44-88 (113)
121 1r4i_A Androgen receptor; AR, 97.6 1.1E-06 3.9E-11 64.0 -4.2 43 160-205 42-84 (105)
122 3g9m_A Glucocorticoid receptor 97.6 1E-06 3.4E-11 62.7 -4.4 44 161-207 38-81 (90)
123 1kb2_A Vitamin D3 receptor; VD 97.5 2.7E-06 9.2E-11 62.6 -3.5 40 160-202 41-80 (110)
124 2han_B Ecdysone receptor; tran 97.5 4.1E-06 1.4E-10 62.6 -2.7 42 160-204 43-84 (119)
125 2nll_B Protein (thyroid hormon 97.5 3E-06 1E-10 61.6 -3.7 41 161-204 39-79 (103)
126 1v9x_A Poly (ADP-ribose) polym 26.5 30 0.001 24.9 1.9 23 19-41 67-89 (114)
127 1uw0_A DNA ligase III; DNA rep 25.9 37 0.0013 24.6 2.2 21 21-41 73-93 (117)
128 3odc_A Poly [ADP-ribose] polym 24.1 24 0.00082 25.4 0.9 21 21-41 75-95 (111)
129 1av3_A Kappa-PVIIA; kappa-cono 23.3 25 0.00084 17.6 0.6 8 187-194 4-11 (27)
130 2dmj_A Poly (ADP-ribose) polym 21.2 39 0.0013 24.0 1.5 20 22-41 76-95 (106)
131 3od8_A Poly [ADP-ribose] polym 20.2 29 0.00098 25.2 0.6 21 21-41 88-108 (116)
No 1
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=100.00 E-value=1.7e-33 Score=241.96 Aligned_cols=179 Identities=23% Similarity=0.277 Sum_probs=153.1
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
.++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++++.+.+.+++.+|..+.+... ...+
T Consensus 37 ~~~~~~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~l~~~~g~~~~~~~~-~~~~ 115 (243)
T 3ltx_A 37 LLNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVHLIECCWMELLLLNCAFRSIEHGGKSLAFAPDLVLDRSSW-STVE 115 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSEEEEETTEEEEHHHH-HHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEecCCcccchhhh-cccC
Confidence 478999999999999999999999999999999999999999999999999999988877788888876554332 1223
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCccccc
Q psy1615 82 FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKP 156 (295)
Q Consensus 82 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~l 156 (295)
+.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++..+|+.+|+++..+ |+. ||++|.||++|
T Consensus 116 ~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~----gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~L 191 (243)
T 3ltx_A 116 MTEIFEQVAAVSEQMMQNHLHKDELLLLQAMVLVNAEVR----RLASYNQIFNMQQSLLDAIVDTAQKYHPDNVRHVPAV 191 (243)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCCS----CCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 445566778999999999999999999999999999999 888999999999988554 443 89999999998
Q ss_pred ccccc-------------hhhhhhcCCCccchhhhhhhcCCC
Q psy1615 157 LPLNQ-------------HYTATISNVPLSSSLSTAVQRGRV 185 (295)
Q Consensus 157 Ll~~~-------------y~~r~~~~c~id~l~r~~~q~~r~ 185 (295)
|++++ ++.+..|..+++.++.+++...+.
T Consensus 192 L~~Lp~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~~ 233 (243)
T 3ltx_A 192 LLLLTHIRQAGERGIAFFQRLKSEGVVTFCDLLKEMLDAQDF 233 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHhCccc
Confidence 88763 345677999999999999987654
No 2
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=241.34 Aligned_cols=178 Identities=67% Similarity=1.015 Sum_probs=141.5
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
+++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.|+++++.+...+++++|....+.......+
T Consensus 38 ~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~g~~~~~~~~~~~~~ 117 (244)
T 3cjw_A 38 GIENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVA 117 (244)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCC-----------------CC
T ss_pred cHHHHHHHHHHHHHHHHhHHHhCCChhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccchhhhHH
Confidence 46789999999999999999999999999999999999999999999999999998877777777665443322222223
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCccccc
Q psy1615 82 FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKP 156 (295)
Q Consensus 82 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~l 156 (295)
+.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++|.||++|
T Consensus 118 ~~~~~~~~~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~----gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~L 193 (244)
T 3cjw_A 118 FMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDAC----GLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKL 193 (244)
T ss_dssp CSHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTST----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 344557788999999999999999999999999999999 788899999999987544 444 88999999998
Q ss_pred ccccc-------------hhhhhhcCCCccchhhhhhhcC
Q psy1615 157 LPLNQ-------------HYTATISNVPLSSSLSTAVQRG 183 (295)
Q Consensus 157 Ll~~~-------------y~~r~~~~c~id~l~r~~~q~~ 183 (295)
|++++ ++.+..++.+++.++.+++..+
T Consensus 194 Ll~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~ 233 (244)
T 3cjw_A 194 LLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSG 233 (244)
T ss_dssp HTTHHHHHHSCHHHHHHHHTHHHHTTCCGGGTHHHHHTCC
T ss_pred HHHhHHHHhhhHHHHHHHHhhcccCCCcHHHHHHHHHhCC
Confidence 87763 3456678899999999998765
No 3
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=100.00 E-value=4.1e-33 Score=241.31 Aligned_cols=178 Identities=27% Similarity=0.414 Sum_probs=150.4
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCC-CcceeecCCcccChhhHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-VAPLLAAAGLHASPMAADRVV 80 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 80 (295)
+++.+|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||+++..+ .+.+++.+|..+.........
T Consensus 57 ~~~~l~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~~~~ 136 (257)
T 3plz_A 57 TFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQA 136 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCBTTEEECTTSCEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEecCCCccChHHHhhhc
Confidence 5789999999999999999999999999999999999999999999999999998654 466777888765543222111
Q ss_pred --HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcc
Q psy1615 81 --AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMF 153 (295)
Q Consensus 81 --~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf 153 (295)
...+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. ||++|.||
T Consensus 137 g~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~----gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf 212 (257)
T 3plz_A 137 GATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVK----NLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKF 212 (257)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTCC----SCTTHHHHHHHHHHHHHHHHHHHHHHCTTSTTHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----CCccHHHHHHHHHHHHHHHHHHHHHhCCCchhHH
Confidence 1245567788999999999999999999999999999999 888999999999988555 443 89999999
Q ss_pred ccccccc-------------chhhhhhcCCCccchhhhhhhcC
Q psy1615 154 GKPLPLN-------------QHYTATISNVPLSSSLSTAVQRG 183 (295)
Q Consensus 154 ~~lLl~~-------------~y~~r~~~~c~id~l~r~~~q~~ 183 (295)
++||+++ +++.+.+|..+++.++.+++.+.
T Consensus 213 ~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~i~~Ll~Eml~~k 255 (257)
T 3plz_A 213 GQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAK 255 (257)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTCSCCCSHHHHHHTC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhcc
Confidence 9988876 34567889999999999998764
No 4
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=100.00 E-value=1.3e-32 Score=237.03 Aligned_cols=179 Identities=25% Similarity=0.345 Sum_probs=148.9
Q ss_pred CcHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCC-CCcceeecCCcccChhhHHHH
Q psy1615 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPL-HVAPLLAAAGLHASPMAADRV 79 (295)
Q Consensus 1 ~~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (295)
++++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||+++.. +.+.+++.+|..+........
T Consensus 45 ~~~~~l~~~a~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~~~ 124 (246)
T 1ymt_A 45 APFSLLCRMADQTFISIVDWARRCMVFKELEVADQMTLLQNSWSELLVLDHIYRQVQYGKEDSILLVTGQEVELSTVAVQ 124 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTEEECTTSCEEEHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeeEecCCCccchhhhhhh
Confidence 3678999999999999999999999999999999999999999999999999999875 355667777766544322111
Q ss_pred --HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCc
Q psy1615 80 --VAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRM 152 (295)
Q Consensus 80 --~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~R 152 (295)
....+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++|.|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~~pd~~----gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~R 200 (246)
T 1ymt_A 125 AGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVK----FLNNHSLVKDAQEKANAALLDYTLSHYPHSGDK 200 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCGG----GSSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTH
T ss_pred cchhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCccc----ccccHHHHHHHHHHHHHHHHHHHHhcCCchhhH
Confidence 12234567788999999999999999999999999999999 788999999999988555 443 8999999
Q ss_pred ccccccccc-------------hhhhhhcCCCccchhhhhhhcC
Q psy1615 153 FGKPLPLNQ-------------HYTATISNVPLSSSLSTAVQRG 183 (295)
Q Consensus 153 f~~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~~ 183 (295)
|++||++++ ++.+..++.+++.++.+++...
T Consensus 201 f~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~ 244 (246)
T 1ymt_A 201 FQQLLLSLVEVRALSMQAKEYLYHKHLGNEMPRNNLLIEMLQAK 244 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCTTCHHHHHHHC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhCc
Confidence 999888763 4456678889999999888754
No 5
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=100.00 E-value=1.3e-32 Score=236.44 Aligned_cols=178 Identities=24% Similarity=0.376 Sum_probs=146.3
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCC-CcceeecCCcccChhhHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-VAPLLAAAGLHASPMAADRVV 80 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 80 (295)
.++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||+++..+ .+.+.+.+|..+...... ..
T Consensus 47 ~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~g~~~~~~~~~-~~ 125 (243)
T 2iz2_A 47 LFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMKLLQHSWSDMLVLDHLHHRIHNGLPDETQLNNGQVFNLMSLG-LL 125 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCCBCSSSCBCCCCTTT-TS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChhHhhCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeecCCcccChhhHh-hc
Confidence 5789999999999999999999999999999999999999999999999999998643 344556677554432211 11
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcccc
Q psy1615 81 AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGK 155 (295)
Q Consensus 81 ~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~ 155 (295)
+..+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. ||++|.||++
T Consensus 126 ~~~~~~~~~~~~~~~l~~L~ld~~E~~lLkAivL~npd~~----gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~ 201 (243)
T 2iz2_A 126 GVPQLGDYFNELQNKLQDLKFDMGDYVCMKFLILLNPSVR----GIVNRKTVSEGHDNVQAALLDYTLTCYPSVNDKFRG 201 (243)
T ss_dssp STTSSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCTTST----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC----CcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 1123346778999999999999999999999999999999 788999999999988555 443 8999999999
Q ss_pred cccccc-------------hhhhhhcCCCccchhhhhhhcCC
Q psy1615 156 PLPLNQ-------------HYTATISNVPLSSSLSTAVQRGR 184 (295)
Q Consensus 156 lLl~~~-------------y~~r~~~~c~id~l~r~~~q~~r 184 (295)
||++++ ++.+..++.+++.++.+++...|
T Consensus 202 LL~~L~~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~ 243 (243)
T 2iz2_A 202 LVNILPEIHAMAVRGEDHLYTKHCAGSAPTQTLLMEMLHAKR 243 (243)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTTCSCSSSHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHhcCC
Confidence 888763 44567788899999999887654
No 6
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=100.00 E-value=1.1e-32 Score=237.52 Aligned_cols=175 Identities=25% Similarity=0.367 Sum_probs=147.1
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
+++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++++.+ +.+++++|..+.+.. ....+
T Consensus 49 ~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~lL~~a~~s~~~~-~~l~~~~g~~~~~~~-~~~~~ 126 (248)
T 3k6p_A 49 AVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQ-DELAFAEDLVLDEEG-ARAAG 126 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCEEEETTEEECHHH-HHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHccCCC-CeEEeCCCcccChhh-hhhcc
Confidence 5789999999999999999999999999999999999999999999999999999887 667777887665532 22334
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CC----CCCCc
Q psy1615 82 FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FT----TGKRM 152 (295)
Q Consensus 82 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~----~~~~R 152 (295)
+.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++..+|+.+|+++..+ |+. |+ ++|.|
T Consensus 127 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~----gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~~R 202 (248)
T 3k6p_A 127 LGELGAALLQLVRRLQALRLEREEYVLLKALALANSDSV----HIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRR 202 (248)
T ss_dssp TTTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTCCCT----TCSCHHHHHHHHHHHHHHHHHHHHTC----CCCCCH-
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCccchHHH
Confidence 455667889999999999999999999999999999999 888999999999988555 444 77 89999
Q ss_pred ccccccccc-------------hhhhhhcCCCccchhhhhhhc
Q psy1615 153 FGKPLPLNQ-------------HYTATISNVPLSSSLSTAVQR 182 (295)
Q Consensus 153 f~~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~ 182 (295)
|++||++++ ++.+..+..+++.++.+++.+
T Consensus 203 f~~LL~~Lp~Lr~l~~~~~e~l~~~k~~g~~~i~~Ll~Eml~~ 245 (248)
T 3k6p_A 203 AGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEA 245 (248)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHCC-CCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHhc
Confidence 999888763 445677889999999888753
No 7
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-33 Score=240.32 Aligned_cols=179 Identities=30% Similarity=0.489 Sum_probs=147.1
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccC----hh--h
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHAS----PM--A 75 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~----~~--~ 75 (295)
+++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.|++++..+.+.++.+++.... .. .
T Consensus 35 ~~~~~~e~a~~~L~~~VewaK~iP~F~~L~~~DQ~~LLk~~w~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~~~~~ 114 (249)
T 3p0u_A 35 NVHYICESASRLLFLSMHWARSIPAFQALGQDCNTSLVRACWNELFTLGLAQCAQVMSLSTILAAIVNHLQNSIQEDKLS 114 (249)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHTCTTTGGGCHHHHHHHHHTTHHHHHHHHHHHTTTSCCCCCCCCC-CC---CC-------
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCcchhhcccccccccccccccch
Confidence 56789999999999999999999999999999999999999999999999999988777766665543221 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCC
Q psy1615 76 ADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGK 150 (295)
Q Consensus 76 ~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~ 150 (295)
.....++.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++..+|+.+|+++..+ |+. |+++|
T Consensus 115 ~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~----gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~ 190 (249)
T 3p0u_A 115 GDRIKQVMEHIWKLQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHP----GLTSTSQIEKFQEAAQMELQDYVQATYSEDT 190 (249)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCSCST----TCCCSHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCC----CCccHHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 112224556667788999999999999999999999999999999 888999999999988554 443 89999
Q ss_pred Cccccccccc-------------chhhhhhcCCCccchhhhhhhcCC
Q psy1615 151 RMFGKPLPLN-------------QHYTATISNVPLSSSLSTAVQRGR 184 (295)
Q Consensus 151 ~Rf~~lLl~~-------------~y~~r~~~~c~id~l~r~~~q~~r 184 (295)
.||++||+.+ +++.+.+|+.+++.++.+++..+.
T Consensus 191 ~Rf~~LL~~L~~Lr~i~~~~~e~l~f~~~~g~~~i~~Ll~eml~~~~ 237 (249)
T 3p0u_A 191 YRLARILVRLPALRLMSSNITEELFFTGLIGNVSIDSIIPYILKMET 237 (249)
T ss_dssp THHHHHHTTHHHHHTSCHHHHHHHHCCSSHHHHCHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeeeecccCCCCHHHHHHHHHhCCc
Confidence 9999988876 355678899999999999988754
No 8
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=99.98 E-value=2.6e-32 Score=233.67 Aligned_cols=172 Identities=21% Similarity=0.244 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.|+++.+. .+.+++.+|..+.+.... ..++
T Consensus 46 ~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~-~~~l~~~~g~~~~~~~~~-~~g~ 123 (236)
T 1fcy_A 46 WDKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPE-QDTMTFSDGLTLNRTQMH-NAGF 123 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETT-TTEEECTTCBEEEHHHHH-HHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhccC-CCeEEeCCCceecHHHHH-HcCc
Confidence 67899999999999999999999999999999999999999999999999999874 456777888766543322 2233
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcccccc
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKPL 157 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~lL 157 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. ||++|.||++||
T Consensus 124 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~----gL~~~~~v~~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL 199 (236)
T 1fcy_A 124 GPLTDLVFAFAGQLLPLEMDDTETGLLSAICLICGDRM----DLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRML 199 (236)
T ss_dssp GGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTTST----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 44556777899999999999999999999999999999 888999999999988554 443 899999999988
Q ss_pred cccc-------------hhhhhhcCCCccchhhhhh
Q psy1615 158 PLNQ-------------HYTATISNVPLSSSLSTAV 180 (295)
Q Consensus 158 l~~~-------------y~~r~~~~c~id~l~r~~~ 180 (295)
++++ ++.+..+..+++.++.+++
T Consensus 200 ~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml 235 (236)
T 1fcy_A 200 MKITDLRGISTKGAERAITLKMEIPGPMPPLIREML 235 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCCCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHh
Confidence 7663 3345556667777766654
No 9
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=99.98 E-value=5e-32 Score=232.95 Aligned_cols=175 Identities=22% Similarity=0.338 Sum_probs=147.5
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
+++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++++.++. +++.+|..+.... ....+
T Consensus 49 ~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~-~~~~~~~~~~~~~-~~~~~ 126 (244)
T 2e2r_A 49 ALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDE-LVYADDYIMDEDQ-SKLAG 126 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSSSC-EEEETTEEECHHH-HHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCe-EEecCCEeecHHH-hhhcc
Confidence 478999999999999999999999999999999999999999999999999999987654 5556665544322 22234
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCccccc
Q psy1615 82 FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKP 156 (295)
Q Consensus 82 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~l 156 (295)
+.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++|.||++|
T Consensus 127 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~----gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~Rf~~L 202 (244)
T 2e2r_A 127 LLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSM----HIEDVEAVQKLQDVLHEALQDYEAGQHMEDPRRAGKM 202 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCCT----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCC----CCcCHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 455667788999999999999999999999999999999 788999999999988554 443 89999999998
Q ss_pred ccccc-------------hhhhhhcCCCccchhhhhhhc
Q psy1615 157 LPLNQ-------------HYTATISNVPLSSSLSTAVQR 182 (295)
Q Consensus 157 Ll~~~-------------y~~r~~~~c~id~l~r~~~q~ 182 (295)
|+.++ ++.+..+..+++.++.+++..
T Consensus 203 L~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~ 241 (244)
T 2e2r_A 203 LMTLPLLRQTSTKAVQHFYNIKLEGKVPMHKLFLEMLEA 241 (244)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHCCSCCCHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHhC
Confidence 88763 445667888999999988865
No 10
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=99.98 E-value=2.8e-32 Score=244.98 Aligned_cols=179 Identities=27% Similarity=0.409 Sum_probs=135.3
Q ss_pred CcHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCC-CcceeecCCcccChhhHHHH
Q psy1615 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLH-VAPLLAAAGLHASPMAADRV 79 (295)
Q Consensus 1 ~~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 79 (295)
++++.+|+++++.++.+|+|||++|+|.+|+.+||+.|||++|+|+++|+.||+++..+ .+.+++.+|..+........
T Consensus 151 ~~~~~l~e~a~~~L~~~VewAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~rs~~~~~~~~ll~~~G~~i~~~~~~~~ 230 (352)
T 3tx7_B 151 STFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKEGSIFLVTGQQVDYSIIASQ 230 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCC----------CHHHHHHHHHHHHHHHHHHHHHHTCCSSCCBCTTCCBCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChhhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEecCCCcccHHHHHHh
Confidence 35789999999999999999999999999999999999999999999999999988654 35666778876654332211
Q ss_pred H--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCc
Q psy1615 80 V--AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRM 152 (295)
Q Consensus 80 ~--~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~R 152 (295)
. .+.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++..+|+.+|+++..+ |+. |++++.|
T Consensus 231 ~g~~~~~l~~~l~~l~~~l~~L~ld~~EyalLkAIvLfnpd~~----gLs~~~~Ve~lQe~~~~aL~~y~~~~~p~~~~R 306 (352)
T 3tx7_B 231 AGATLNNLMSHAQELVAKLRSLQFDQREFVCLKFLVLFSLDVK----NLENFQLVEGVQEQVNAALLDYTMCNYPQQTEK 306 (352)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCSCC----------CHHHHHHHHHHHHHHHHHHHHCTTCTTH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CCchHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 1 1245567788999999999999999999999999999999 888999999999998555 443 8899999
Q ss_pred cccccccc-------------chhhhhhcCCCccchhhhhhhcC
Q psy1615 153 FGKPLPLN-------------QHYTATISNVPLSSSLSTAVQRG 183 (295)
Q Consensus 153 f~~lLl~~-------------~y~~r~~~~c~id~l~r~~~q~~ 183 (295)
|++||+++ +++.+.+++.+++.++.+++...
T Consensus 307 F~kLLllLp~LR~ls~~~~e~L~~~kl~g~~~i~~LL~EMl~ak 350 (352)
T 3tx7_B 307 FGQLLLRLPEIRAISMQAEEYLYYKHLNGDVPYNNLLIEMLHAK 350 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSCSSCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHhcc
Confidence 99988876 34567889999999999998864
No 11
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=99.98 E-value=2.4e-32 Score=234.45 Aligned_cols=181 Identities=19% Similarity=0.273 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++++.+ +.+++.+|..+.+.......++
T Consensus 35 ~~~~~~~a~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~~~~ 113 (240)
T 3oll_A 35 MMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHP-GKLIFAPDLVLDRDEGKCVEGI 113 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTST-TEEEEETBEEEEGGGGGGSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHccCCC-CeeEecCCcccchhhHHHHhhH
Confidence 689999999999999999999999999999999999999999999999999999865 5677777766555432223345
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCccccccc---chhHHHHHHHHHHHHHH---Hhh-----CCCCCC
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGV---LLKALHVDSAEYSCLKA---IVL-----FTTGKR 151 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~---l~~~~~i~~~q~~~l~~---l~~-----~~~~~~ 151 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||||+++++.+ ++...+++.+|+++..+ |+. ++++|.
T Consensus 114 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~ 193 (240)
T 3oll_A 114 LEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSM 193 (240)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCSCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHhccCCCCcchhh
Confidence 5566778899999999999999999999999999999965532 34567888888877544 443 356788
Q ss_pred ccccccccc-------------chhhhhhcCCCccchhhhhhhcCC
Q psy1615 152 MFGKPLPLN-------------QHYTATISNVPLSSSLSTAVQRGR 184 (295)
Q Consensus 152 Rf~~lLl~~-------------~y~~r~~~~c~id~l~r~~~q~~r 184 (295)
||++||+++ +++.+..|..+++.++.+++...|
T Consensus 194 Rf~~LL~~Lp~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~eml~~~~ 239 (240)
T 3oll_A 194 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHV 239 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHC-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccc
Confidence 999988865 355678899999999999987654
No 12
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=99.97 E-value=5e-32 Score=235.65 Aligned_cols=178 Identities=22% Similarity=0.367 Sum_probs=147.7
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCC---CCcc--------------ee
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPL---HVAP--------------LL 64 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~---~~~~--------------~~ 64 (295)
+++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++++. +.+. ++
T Consensus 43 ~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~w~el~lL~~a~~s~~~~~~~~~~~~~~~~~~~~~~~~l~ 122 (264)
T 1g2n_A 43 PVSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEERDGVDGTGNRTTSPPQLMC 122 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHGGGSCCC----------CCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhcCCHHHHHHHHHHhhHHHHHHHHHHHcccccccccccccccccccccccccee
Confidence 578999999999999999999999999999999999999999999999999999876 1333 67
Q ss_pred ecCCcccChhhHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH-
Q psy1615 65 AAAGLHASPMAADRVVAFMDHI-RVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA- 142 (295)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~- 142 (295)
+.+|..+...... ..++.+.+ +.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+
T Consensus 123 ~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~npd~~----gL~~~~~ve~lq~~~~~aL 197 (264)
T 1g2n_A 123 LMPGMTLHRNSAL-QAGVGQIFDRVLSELSLKMRTLRVDQAEYVALKAIILLNPDVK----GLKNRQEVEVLREKMFLCL 197 (264)
T ss_dssp EETTEEEEHHHHH-HHTCHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCT----TCSCHHHHHHHHHHHHHHH
T ss_pred ecCCcccCchhhh-hccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC----CCccHHHHHHHHHHHHHHH
Confidence 7777665543222 22334444 6788999999999999999999999999999999 788999999999988544
Q ss_pred --Hhh--CCCCCCcccccccccc-------------hhhhhhcCCCccchhhhhhhcCC
Q psy1615 143 --IVL--FTTGKRMFGKPLPLNQ-------------HYTATISNVPLSSSLSTAVQRGR 184 (295)
Q Consensus 143 --l~~--~~~~~~Rf~~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~~r 184 (295)
|+. |+++|.||++||++++ ++.+..+..+++.++.+++....
T Consensus 198 ~~y~~~~~~~~~~Rf~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~~ 256 (264)
T 1g2n_A 198 DEYCRRSRSSEEGRFAALLLRLPALRSISLKSFEHLFFFHLVADTSIAGYIRDALRNHA 256 (264)
T ss_dssp HHHHHHHSTTCTTHHHHHHTHHHHHHHHHHHHHHHHHHTTCBCTTTHHHHHHHHHTCCC
T ss_pred HHHHHHhCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHhCCC
Confidence 554 8999999999888763 34466788899999999988654
No 13
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=99.97 E-value=1.4e-32 Score=238.93 Aligned_cols=177 Identities=15% Similarity=0.225 Sum_probs=140.6
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecC---CcccChhh---
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA---GLHASPMA--- 75 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~---~~~~~~~~--- 75 (295)
+++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++++.+......+. +.......
T Consensus 48 ~~~~l~e~a~~~L~~~V~wAK~iP~F~~L~~~DQv~LLk~~w~ElllL~~A~rs~~~~~~~~~~~~~~~~il~~~~~~~~ 127 (268)
T 3f5c_B 48 DPQVVCEAASAGLLKTLRFVKYLPCFQILPLDQQLVLVRSCWAPLLMLELAQDHLHFEMMEIPETNTTQEMLTTRRQETE 127 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCC------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHhccccccccchhhhhhhhhcccccccc
Confidence 678999999999999999999999999999999999999999999999999999877654321111 11110000
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHH
Q psy1615 76 ------------------ADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEY 137 (295)
Q Consensus 76 ------------------~~~~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~ 137 (295)
........+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+
T Consensus 128 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~----gL~~~~~ve~lq~ 203 (268)
T 3f5c_B 128 GPEPAEPQATEQPQMVSAEAGHLLPAAAVQAIKSFFFKCWSLNIDTKEYAYLKGTVLFNPDLP----GLQCVKYIEGLQW 203 (268)
T ss_dssp ---------------------CCCCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTST----TCSCHHHHHHHHH
T ss_pred cccccccccccccccccchhccccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC----CCchHHHHHHHHH
Confidence 000001124457788999999999999999999999999999999 8889999999999
Q ss_pred HHHHH---Hhh--CCCCCCccccccccc-------------chhhhhhcCCCccchhhhhhhc
Q psy1615 138 SCLKA---IVL--FTTGKRMFGKPLPLN-------------QHYTATISNVPLSSSLSTAVQR 182 (295)
Q Consensus 138 ~~l~~---l~~--~~~~~~Rf~~lLl~~-------------~y~~r~~~~c~id~l~r~~~q~ 182 (295)
++..+ |+. |+++|.||++||+++ +++.+.+|+.+++.++.+++.+
T Consensus 204 ~~~~aL~~y~~~~~p~~~~Rf~~LL~~Lp~LR~i~~~~~e~l~~~k~~g~~~i~~Ll~Eml~a 266 (268)
T 3f5c_B 204 RTQQILTEHIRMMQREYQIRSAELNSALFLLRFINSDVVTELFFRPIIGAVSMDDMMLEMLCA 266 (268)
T ss_dssp HHHHHHHHHHHHHSSCSSHHHHHHHHHHHHHTTSCSSHHHHHHTHHHHCSCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHhC
Confidence 88554 443 899999999988776 3556788999999999998753
No 14
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=99.97 E-value=2e-32 Score=236.09 Aligned_cols=184 Identities=22% Similarity=0.327 Sum_probs=150.7
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
.++.+|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||+++..+ +.+++.+|..+.........+
T Consensus 36 ~~~~l~~~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~-~~l~~~~g~~~~~~~~~~~~~ 114 (248)
T 1xpc_A 36 MMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHP-GKLLFAPNLLLDRNQGKCVEG 114 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTST-TEEEEETTEEEEHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHhHHHHHHHHHHHhcccc-CceeecCCceeCccchhhhcc
Confidence 4689999999999999999999999999999999999999999999999999999765 566777776554432212224
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCccccc----ccchhHHHHHHHHHHHHHHH---hh--C---CCC
Q psy1615 82 FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFT----GVLLKALHVDSAEYSCLKAI---VL--F---TTG 149 (295)
Q Consensus 82 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~----~~l~~~~~i~~~q~~~l~~l---~~--~---~~~ 149 (295)
+.+.++.+.+++.+|++|++|++||+|||||+|||||+++++ .|+++...|+.+|+++..+| +. + +++
T Consensus 115 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~~ls~~~~~gl~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~ 194 (248)
T 1xpc_A 115 MVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQ 194 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCCCCcch
Confidence 455567788999999999999999999999999999996553 37889999999999985554 43 2 467
Q ss_pred CCcccccccccc-------------hhhhhhcCCCccchhhhhhhcCCCC
Q psy1615 150 KRMFGKPLPLNQ-------------HYTATISNVPLSSSLSTAVQRGRVP 186 (295)
Q Consensus 150 ~~Rf~~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~~r~~ 186 (295)
|.||++||++++ ++.+..+..+++.++.+++...+.+
T Consensus 195 ~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~~~~Ll~eml~~~~~~ 244 (248)
T 1xpc_A 195 HQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHRLH 244 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSSCHHHHHHHHHSCCSTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCccC
Confidence 789999888763 3456668889999999999877653
No 15
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.97 E-value=5.5e-32 Score=231.51 Aligned_cols=175 Identities=30% Similarity=0.480 Sum_probs=142.6
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhH--HHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA--DRV 79 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 79 (295)
++.++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.++++|+.||++++.+ +.+++++|..+.+... .+.
T Consensus 38 ~~~~~~~~~~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~-~~~~~~~g~~~~~~~~~~~~~ 116 (235)
T 2nxx_A 38 TVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQ-DAIVLATGLTVNKSTAHAVGV 116 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHTTSSSS-SSEECSSSCEECSSSCSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHhcccCC-CceEecCCcccccchhhhhch
Confidence 5789999999999999999999999999999999999999999999999999999874 4566777765543321 111
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCccc
Q psy1615 80 VAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFG 154 (295)
Q Consensus 80 ~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~ 154 (295)
..+.+ +.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++|.||+
T Consensus 117 ~~~~~--~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~----gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~ 190 (235)
T 2nxx_A 117 GNIYD--RVLSELVNKMKEMKMDKTELGCLRAIILYNPDVR----GIKSVQEVEMLREKIYGVLEEYTRTTHPNEPGRFA 190 (235)
T ss_dssp SSSHH--HHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTST----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHH
Confidence 12222 4567899999999999999999999999999999 788999999999988554 443 899999999
Q ss_pred ccccccc-------------hhhhhhcCCCccchhhhhhhcC
Q psy1615 155 KPLPLNQ-------------HYTATISNVPLSSSLSTAVQRG 183 (295)
Q Consensus 155 ~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~~ 183 (295)
+||+.++ ++.+..+..++++++.+++...
T Consensus 191 ~LL~~L~~Lr~~~~~~~e~l~~~~~~g~~~~~~Ll~eml~~~ 232 (235)
T 2nxx_A 191 KLLLRLPALRSIGLKCLEHLFFFKLIGDVPIDTFLMEMLEGT 232 (235)
T ss_dssp HHHTHHHHHHHHHHTCCSCTTTTSSSSCCCHHHHHHHHTTC-
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhCC
Confidence 9887763 3445567777888887777643
No 16
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.97 E-value=3.1e-32 Score=240.14 Aligned_cols=184 Identities=22% Similarity=0.355 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++.+|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||+++... +.+++.+|..+.+.......++
T Consensus 46 ~~~l~e~a~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~-~~l~~~~g~~~~~~~~~~~~g~ 124 (298)
T 2ocf_A 46 MGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSMEHP-GKLLFAPNLLLDRNQGKCVEGM 124 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTST-TEEEEETTEEEEHHHHTTSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHHhhHHHHHHHHHHHhcccC-CceeecCCceechhhhhhhhhH
Confidence 578999999999999999999999999999999999999999999999999999765 5567777766554332122344
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCccccc----ccchhHHHHHHHHHHHHHHH---hh-----CCCCC
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFT----GVLLKALHVDSAEYSCLKAI---VL-----FTTGK 150 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~----~~l~~~~~i~~~q~~~l~~l---~~-----~~~~~ 150 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||||+++++ .|+++...|+.+|+++..+| +. ++++|
T Consensus 125 ~~~~~~l~~~~~~l~~L~ld~~Ey~lLkAIvLfnpd~~~LS~~~~~gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~ 204 (298)
T 2ocf_A 125 VEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQH 204 (298)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCC-----------CHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHhHhhhCcCHHHHHHHHHHHHcCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH
Confidence 55566778999999999999999999999999999995443 27888999999999986654 32 35677
Q ss_pred Ccccccccccc-------------hhhhhhcCCCccchhhhhhhcCCCCC
Q psy1615 151 RMFGKPLPLNQ-------------HYTATISNVPLSSSLSTAVQRGRVPP 187 (295)
Q Consensus 151 ~Rf~~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~~r~~~ 187 (295)
.||++||++++ ++.+..+..+++.++.+++...+...
T Consensus 205 ~RF~~LLl~Lp~Lr~i~~~~~e~l~~~kl~g~~~i~~Ll~Eml~~~~~~~ 254 (298)
T 2ocf_A 205 QRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAHRLHA 254 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHcCCCccC
Confidence 89999888763 45567788999999999999876533
No 17
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=99.97 E-value=1.6e-31 Score=236.75 Aligned_cols=176 Identities=20% Similarity=0.261 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|+|+++|+.|++++... +.+++.+|..+...... ..++
T Consensus 73 ~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~-~~l~~~~g~~~~~~~~~-~~g~ 150 (303)
T 1xdk_B 73 WDKFSELATKCIIKIVEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQ-DTMTFSDGLTLNRTQMH-NAGF 150 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTEETTT-TEEECTTCBEEEHHHHH-HTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccCCHHHHHHHHHhhHHHHHHHHHHHHhcccC-CeEEecCCceecHHHHh-hcCc
Confidence 678999999999999999999999999999999999999999999999999998754 56777888766543221 1233
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcccccc
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKPL 157 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~lL 157 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++|.||++||
T Consensus 151 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~----gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL 226 (303)
T 1xdk_B 151 GPLTDLVFTFANQLLPLEMDDTETGLLSAICLICGDRQ----DLEEPTKVDKLQEPLLEALKIYIRKRRPSKPHMFPKIL 226 (303)
T ss_dssp GGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCSCSS----SCSSHHHHHHHTHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCC----CCccHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHH
Confidence 34456677899999999999999999999999999999 888999999999987544 543 899999999988
Q ss_pred cccc-------------hhhhhhcCCCccchhhhhhhcCC
Q psy1615 158 PLNQ-------------HYTATISNVPLSSSLSTAVQRGR 184 (295)
Q Consensus 158 l~~~-------------y~~r~~~~c~id~l~r~~~q~~r 184 (295)
++++ ++.+..++.+++.++.+++...+
T Consensus 227 ~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~Eml~~~~ 266 (303)
T 1xdk_B 227 MKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSE 266 (303)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTCSSCCCHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCC
Confidence 8762 34566778899999999987543
No 18
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=99.97 E-value=1.6e-31 Score=231.04 Aligned_cols=172 Identities=24% Similarity=0.307 Sum_probs=142.9
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
.++++++++++.+..+|+|||++|+|.+|+.+||++|||++|+|+++|+.|+++.+.. +.+++.+|........ ..+
T Consensus 53 ~~~~~~~l~~~~i~~iV~wAK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~-~~l~~~~~~~~~~~~~--~~~ 129 (257)
T 3v3e_B 53 DVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGE-GKLIFCSGLVLHRLQC--ARG 129 (257)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBGGG-TEEECTTSBEEEHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhccCCC-CeeEeCCCccccHHHH--Hhh
Confidence 3678999999999999999999999999999999999999999999999999998654 4466677766654332 345
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHH---HHhh----CCCCCCccc
Q psy1615 82 FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLK---AIVL----FTTGKRMFG 154 (295)
Q Consensus 82 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~---~l~~----~~~~~~Rf~ 154 (295)
+.+.++.+.+++.+|++|++|++||+|||||+||| |++ |+++...|+.+|+++.. .|+. +|+++.||+
T Consensus 130 ~~~~~~~l~~~~~~l~~L~ld~~E~a~LkAivLfs-d~~----gL~~~~~Ve~lqe~~~~aL~~yi~~~~~~p~~~~rf~ 204 (257)
T 3v3e_B 130 FGDWIDSILAFSRSLHSLLVDVPAFACLSALVLIT-DRH----GLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLS 204 (257)
T ss_dssp HTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSS-CCT----TCSSHHHHHHHHHHHHHHHHHHHHHHHCSCC-CHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCC----CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCcHhhHHH
Confidence 66777889999999999999999999999999998 888 89999999999998744 4442 788999999
Q ss_pred ccccccc-------------hhhhhhcCCCccchhhhhhh
Q psy1615 155 KPLPLNQ-------------HYTATISNVPLSSSLSTAVQ 181 (295)
Q Consensus 155 ~lLl~~~-------------y~~r~~~~c~id~l~r~~~q 181 (295)
+||++++ ++.+..|..++..++.++..
T Consensus 205 kLL~~Lp~LR~l~~~~~e~l~~~k~~~~~~~~~Ll~Emf~ 244 (257)
T 3v3e_B 205 RLLGKLPELRTLCTQGLQRIFYLKLEDLVPPPPIIDKIFM 244 (257)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHH
Confidence 9887662 44566677777777777664
No 19
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=99.97 E-value=2.4e-31 Score=231.20 Aligned_cols=174 Identities=21% Similarity=0.262 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.|+++.+.+ +.+.+.+|..+....... .++
T Consensus 70 ~~~~~e~~~~~l~~~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~s~~~~-~~l~~~~g~~~~~~~~~~-~g~ 147 (266)
T 3kmr_A 70 WDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQ-DTMTFSDGLTLNRTQMHN-AGF 147 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEETTT-TEEECTTSBEEEHHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-CeEEecCCcccchHHHhh-cch
Confidence 688999999999999999999999999999999999999999999999999997644 566777887665433221 233
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcccccc
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKPL 157 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~lL 157 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++|.||++||
T Consensus 148 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~~pd~~----gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~LL 223 (266)
T 3kmr_A 148 GPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQ----DLEQPDRVDMLQEPLLEALKVYVRKRRPSRPHMFPKML 223 (266)
T ss_dssp GGGHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCTTST----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHhhCCCcccHHHHHH
Confidence 34456677999999999999999999999999999999 888999999999988554 443 899999999988
Q ss_pred ccc-------------chhhhhhcCCCccchhhhhhhc
Q psy1615 158 PLN-------------QHYTATISNVPLSSSLSTAVQR 182 (295)
Q Consensus 158 l~~-------------~y~~r~~~~c~id~l~r~~~q~ 182 (295)
+++ +++.+..+..+++.++.+++..
T Consensus 224 ~~Lp~Lr~i~~~~~e~l~~~k~~~~~~~~~Ll~Eml~~ 261 (266)
T 3kmr_A 224 MKITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLEN 261 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHC-
T ss_pred HHhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcC
Confidence 875 3455778889999999998875
No 20
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.97 E-value=3e-31 Score=232.63 Aligned_cols=178 Identities=24% Similarity=0.373 Sum_probs=140.0
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcc-------eeecCC------
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP-------LLAAAG------ 68 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~-------~~~~~~------ 68 (295)
+++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.++++|+.||++++.+... +.+++|
T Consensus 48 ~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~~~~~~~~~~~dGs~~~~~ 127 (279)
T 1hg4_A 48 AVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDGGAGGGGGGLGHDGSFERRS 127 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTTC----------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccccccccCccccccc
Confidence 5789999999999999999999999999999999999999999999999999998765542 223333
Q ss_pred -------------cccChhhHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHH
Q psy1615 69 -------------LHASPMAADRVVAFMDHI-RVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDS 134 (295)
Q Consensus 69 -------------~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~ 134 (295)
..+..... ...++.+.. +.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~ld~~E~~lLkAivL~npd~~----gL~~~~~v~~ 202 (279)
T 1hg4_A 128 PGLQPQQLFLNQSFSYHRNSA-IKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIR----GIKSRAEIEM 202 (279)
T ss_dssp ---CCCEEESSSSCEEEHHHH-HHHTCHHHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHSCTTST----TCSCHHHHHH
T ss_pred cccccceeeecCCcccchhhH-hhcchHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC----CCCCHHHHHH
Confidence 22211111 111222222 4567899999999999999999999999999999 7889999999
Q ss_pred HHHHHHHH---Hhh--CCCCCCcccccccccc-------------hhhhhhcCCCccchhhhhhhcCC
Q psy1615 135 AEYSCLKA---IVL--FTTGKRMFGKPLPLNQ-------------HYTATISNVPLSSSLSTAVQRGR 184 (295)
Q Consensus 135 ~q~~~l~~---l~~--~~~~~~Rf~~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~~r 184 (295)
+|+++..+ |+. |+++|.||++||++++ ++.+..++.+++.++.+++...+
T Consensus 203 lq~~~~~aL~~y~~~~~p~~~~Rf~~LL~~L~~Lr~~~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~ 270 (279)
T 1hg4_A 203 CREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQLEAPP 270 (279)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCSSCHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcHHHHHHHHHhCCC
Confidence 99988554 443 8999999999888763 44567788999999999998754
No 21
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=99.97 E-value=7.4e-32 Score=234.79 Aligned_cols=182 Identities=19% Similarity=0.272 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++++.+ +.+++.+|..+.........++
T Consensus 33 ~~~l~e~a~~~l~~~VewAK~lp~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~~~-~~l~~~~g~~~~~~~~~~~~~~ 111 (268)
T 1yye_A 33 MMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHP-GKLIFAPDLVLDRDEGKCVEGI 111 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHTTST-TEEEEETTEEEEGGGGGGSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-CceEecCCcccChhhHhhhccH
Confidence 678999999999999999999999999999999999999999999999999999875 5566777765544322222344
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccc---cchhHHHHHHHHHHHHHH---Hhh-----CCCCCC
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTG---VLLKALHVDSAEYSCLKA---IVL-----FTTGKR 151 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~---~l~~~~~i~~~q~~~l~~---l~~-----~~~~~~ 151 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||||+++++. +..+...++.+|+++..+ |+. ++++|.
T Consensus 112 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~ 191 (268)
T 1yye_A 112 LEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSM 191 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCCC----------CCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhh
Confidence 455667889999999999999999999999999999994431 123477899999887555 443 356788
Q ss_pred cccccccccc-------------hhhhhhcCCCccchhhhhhhcCCC
Q psy1615 152 MFGKPLPLNQ-------------HYTATISNVPLSSSLSTAVQRGRV 185 (295)
Q Consensus 152 Rf~~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~~r~ 185 (295)
||++||++++ ++.+..++.+++.++.+++...+.
T Consensus 192 Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~~ 238 (268)
T 1yye_A 192 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHVL 238 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCccc
Confidence 9999888763 445667888999999998887544
No 22
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.97 E-value=1.1e-30 Score=224.28 Aligned_cols=174 Identities=20% Similarity=0.233 Sum_probs=145.7
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
.++++|+++++.+..+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++.. +.+.+++.+|..+.+... ..+
T Consensus 48 ~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rs~~-~~~~l~~~~g~~~~~~~~--~~~ 124 (244)
T 1pdu_A 48 KVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARI-DDTKLIFCNGTVLHRTQC--LRS 124 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHCCS-SCSEEECTTSBEEEHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCceEeeCCeeecHHHH--HhH
Confidence 46899999999999999999999999999999999999999999999999999975 445677778876654332 224
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CC--CCCCccc
Q psy1615 82 FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FT--TGKRMFG 154 (295)
Q Consensus 82 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~--~~~~Rf~ 154 (295)
+.+.++.+.+++.+|++|++|++||+|||||+||| |++ |+++...|+.+|+++..+ |+. |+ ++|.||+
T Consensus 125 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfn-d~~----gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~Rf~ 199 (244)
T 1pdu_A 125 FGEWLNDIMEFSRSLHNLEIDISAFACLCALTLIT-ERH----GLREPKKVEQLQMKIIGSLRDHVTYNAEAQKKQHYFS 199 (244)
T ss_dssp HTTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHSS-CCT----TCSCHHHHHHHHHHHHHHHHHHHHHCHHHHTSTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCC----CCccHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHH
Confidence 45666778899999999999999999999999998 888 899999999999988555 443 44 6899999
Q ss_pred ccccccc-------------hhhhhhcCCCccchhhhhhhcC
Q psy1615 155 KPLPLNQ-------------HYTATISNVPLSSSLSTAVQRG 183 (295)
Q Consensus 155 ~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~~ 183 (295)
+||++++ ++.+..++.+++.++.+++...
T Consensus 200 ~LL~~L~~Lr~l~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~ 241 (244)
T 1pdu_A 200 RLLGKLPELRSLSVQGLQRIFYLKLEDLVPAPALIENMFVTT 241 (244)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHhCC
Confidence 9888663 4456678888999988887653
No 23
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=99.97 E-value=4.7e-31 Score=228.29 Aligned_cols=154 Identities=15% Similarity=0.180 Sum_probs=127.4
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecC-CcccChhhHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA-GLHASPMAADRVV 80 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (295)
.++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|+|+++|+.|+++.. +.+.+++.+ |..+.+..... .
T Consensus 57 ~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~-~ 134 (254)
T 3b0t_A 57 MLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTM-DDMSWTCGNQDYKYRVSDVTK-A 134 (254)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEET-TTTEEECSSGGGEECHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCeEEecCCCeeeeHHHHHH-c
Confidence 48899999999999999999999999999999999999999999999999998765 444555554 54444332211 1
Q ss_pred HHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CC--CCCCc
Q psy1615 81 AFM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FT--TGKRM 152 (295)
Q Consensus 81 ~~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~--~~~~R 152 (295)
++. +.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+ ++|.|
T Consensus 135 ~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~----gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~R 210 (254)
T 3b0t_A 135 GHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRP----GVQDAALIEAIQDRLSNTLQTYIRCRHPPPGSHLL 210 (254)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCSCST----TCSCHHHHHHHHHHHHHHHHHHHHHHCCTTTTTTH
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc----CCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhH
Confidence 222 4556788999999999999999999999999999999 888999999999988555 443 77 89999
Q ss_pred ccccccccc
Q psy1615 153 FGKPLPLNQ 161 (295)
Q Consensus 153 f~~lLl~~~ 161 (295)
|++||++++
T Consensus 211 f~~LL~~L~ 219 (254)
T 3b0t_A 211 YAKMIQKLA 219 (254)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 999777654
No 24
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=99.97 E-value=2e-31 Score=232.39 Aligned_cols=182 Identities=19% Similarity=0.272 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++++.+ +.+++.+|..+.........++
T Consensus 61 ~~~l~~~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~iL~~a~rs~~~~-~~l~~~~g~~~~~~~~~~~~g~ 139 (271)
T 1l2j_A 61 MMSLTKLADKELVHMISWAKKIPGFVELSLFDQVRLLESCWMEVLMMGLMWRSIDHP-GKLIFAPDLVLDRDEGKCVEGI 139 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHTTHHHHHHHHHHHHTSSST-TEECSSSSCCEETGGGGGSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhccC-CeeeecCCccccchhhhhhccH
Confidence 578999999999999999999999999999999999999999999999999999865 5667777765554322222344
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccc---cchhHHHHHHHHHHHHHH---Hhh-----CCCCCC
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTG---VLLKALHVDSAEYSCLKA---IVL-----FTTGKR 151 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~---~l~~~~~i~~~q~~~l~~---l~~-----~~~~~~ 151 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||||+++++. ++.+...++.+|+++..+ |+. ++++|.
T Consensus 140 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~~~~ 219 (271)
T 1l2j_A 140 LEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAKSGISSQQQSM 219 (271)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhH
Confidence 455667789999999999999999999999999999995542 234456788888887554 443 356788
Q ss_pred cccccccccc-------------hhhhhhcCCCccchhhhhhhcCCC
Q psy1615 152 MFGKPLPLNQ-------------HYTATISNVPLSSSLSTAVQRGRV 185 (295)
Q Consensus 152 Rf~~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~~r~ 185 (295)
||++||++++ ++.+..+..+++.++.+++...+.
T Consensus 220 Rf~~LLl~Lp~Lr~i~~~~~e~l~~~~~~g~~~~~~Ll~Eml~~~~~ 266 (271)
T 1l2j_A 220 RLANLLMLLSHVRHASNKGMEHLLNMKCKNVVPVYDLLLEMLNAHVL 266 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHcCCcc
Confidence 9999888763 345666788999999998876543
No 25
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=99.97 E-value=6.6e-31 Score=228.74 Aligned_cols=177 Identities=18% Similarity=0.197 Sum_probs=144.4
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
.+.++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|+|+++|+.|+++.+. .+.+++.+|..+....... .+
T Consensus 71 ~~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~~-~~~l~~~~g~~~~~~~~~~-~~ 148 (267)
T 3ilz_A 71 AFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQIILLKGCCMEIMSLRAAVRYDPE-SDTLTLSGEMAVKREQLKN-GG 148 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCBTT-TTBEEETTTEEECHHHHHH-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhCCHhHHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEecCCeeecHHHHhc-cC
Confidence 478999999999999999999999999999999999999999999999999998764 4567778887665533221 23
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCccccc
Q psy1615 82 FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKP 156 (295)
Q Consensus 82 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~l 156 (295)
+.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++|.||++|
T Consensus 149 ~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~----gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~Rf~~L 224 (267)
T 3ilz_A 149 LGVVSDAIFELGKSLSAFNLDDTEVALLQAVLLMSTDRS----GLLXVDKIEKSQEAYLLAFEHYVNHRKHNIPHFWPKL 224 (267)
T ss_dssp TTHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHSCCCSS----SCSCHHHHHHHHHHHHHHHHHHHHHHTCSSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC----CCchHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 334456778999999999999999999999999999999 888999999999988554 444 89999999998
Q ss_pred ccccc-------------hhhhhhcCCCc-cchhhhhhhcCC
Q psy1615 157 LPLNQ-------------HYTATISNVPL-SSSLSTAVQRGR 184 (295)
Q Consensus 157 Ll~~~-------------y~~r~~~~c~i-d~l~r~~~q~~r 184 (295)
|+.++ ++.+..+..++ +.++.+++..++
T Consensus 225 L~~Lp~Lr~l~~~~~e~l~~~k~~~~~~~~~~Ll~Em~~~~~ 266 (267)
T 3ilz_A 225 LMKVTDLRMIGAXHASRFLHMKVEXPTELFPPLFLEVFEDQE 266 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-CCSSCGGGSCHHHHHHTCCSC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCCccCCCcHHHHHhcCCC
Confidence 87653 33455566665 777777776543
No 26
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=99.97 E-value=8.1e-31 Score=230.18 Aligned_cols=176 Identities=32% Similarity=0.536 Sum_probs=146.1
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHH--HH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD--RV 79 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 79 (295)
+++++|+++++.++.+|+|||++|+|..|+.+||+.|||++|.++++++.||++++.++. +++++|..+...... ..
T Consensus 84 ~~~~~~~~a~~~l~~~vewaK~ip~F~~L~~~DQ~~LLk~~~~el~il~~a~rs~~~~~~-~~~~~g~~~~~~~~~~~~~ 162 (282)
T 1lbd_A 84 PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGV 162 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHGGGGSSSE-EECTTSCEEEHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCc-eEecCCcccccchhhhccc
Confidence 478999999999999999999999999999999999999999999999999999987655 445777655443221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCccc
Q psy1615 80 VAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFG 154 (295)
Q Consensus 80 ~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~ 154 (295)
..+.+ +.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++|.||+
T Consensus 163 ~~~~~--~~~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~----gLs~~~~v~~lq~~~~~~L~~y~~~~~~~~~~Rf~ 236 (282)
T 1lbd_A 163 GAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK----GLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFA 236 (282)
T ss_dssp HHHHH--HHHHHHHHHTTTTCCCHHHHHHHHHHHHSCTTCT----TCSCHHHHHHHHHHHHHHHHHHHHHHSCCSTTTHH
T ss_pred HHHHH--HHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHH
Confidence 22222 4567899999999999999999999999999999 788888999999887554 443 889999999
Q ss_pred ccccccc-------------hhhhhhcCCCccchhhhhhhcCC
Q psy1615 155 KPLPLNQ-------------HYTATISNVPLSSSLSTAVQRGR 184 (295)
Q Consensus 155 ~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~~r 184 (295)
+||+.++ ++++.+++.+++.++.+++...+
T Consensus 237 ~LL~~L~~Lr~~~~~~~e~l~~~~~~~~~~i~~ll~eml~~~~ 279 (282)
T 1lbd_A 237 KLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPH 279 (282)
T ss_dssp HHHTTHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHcCCC
Confidence 9888763 45677788999999999987653
No 27
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=99.97 E-value=9.4e-31 Score=228.04 Aligned_cols=166 Identities=17% Similarity=0.134 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++++++.++..+..+|+|||++|+|.+|+.+||++|||++|+|+++++.|+++... ...+.+.++............+.
T Consensus 78 ~~~~~~~~~~~v~~iVewAK~iPgF~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 156 (273)
T 3vi8_A 78 FHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKD-GMLVAYGNGFITREFLKSLRKPF 156 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGEETT-EEEETTTTEEEEHHHHHHSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHccCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeeeeCCCccchHHHHHhhhhH
Confidence 56788999999999999999999999999999999999999999999999887643 22233333322211111112244
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcccccc
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKPL 157 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~lL 157 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. ||++|.||++||
T Consensus 157 ~~~~~~l~~~~~~~~~L~ld~~E~alLkAivLf~pd~~----gL~~~~~Ve~lqe~~~~aL~~yi~~~~p~~~~rF~kLL 232 (273)
T 3vi8_A 157 CDIMEPKFDFAMKFNALELDDSDISLFVAAIICCGDRP----GLLNVGHIEKMQEGIVHVLRLHLQSNHPDDIFLFPKLL 232 (273)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCT----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC----CcccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 56668889999999999999999999999999999999 899999999999987544 544 899999999977
Q ss_pred cccchhhhhhcCCCccc
Q psy1615 158 PLNQHYTATISNVPLSS 174 (295)
Q Consensus 158 l~~~y~~r~~~~c~id~ 174 (295)
+.++ ..|.++..+++.
T Consensus 233 ~~Lp-~LR~l~~~~~e~ 248 (273)
T 3vi8_A 233 QKMA-DLRQLVTEHAQL 248 (273)
T ss_dssp HHHH-HHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHH
Confidence 6653 333333333333
No 28
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=99.97 E-value=9.9e-31 Score=230.33 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=142.2
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeec-CCcccChhhHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAA-AGLHASPMAADRVV 80 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (295)
.++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|+|+++|+.|+++.. ..+.+++. +|..+.+..... .
T Consensus 60 ~~~~l~~~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~-~~~~~l~~~~~~~~~~~~~~~-~ 137 (292)
T 2o4j_A 60 MLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIVLLKSSAIEVIMLRSNQSFTM-DDMSWDCGSQDYKYDVTDVSK-A 137 (292)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGTEET-TTTEEECSSGGGEECHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchhhccHHHHHHHHHHhHHHHHHHHHHHHhcC-CCCeEEecCCCeEEcHHHHHh-c
Confidence 47899999999999999999999999999999999999999999999999987654 44555655 365554432221 1
Q ss_pred HHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CC--CCCCc
Q psy1615 81 AFM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FT--TGKRM 152 (295)
Q Consensus 81 ~~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~--~~~~R 152 (295)
++. +.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+ ++|.|
T Consensus 138 g~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~----gL~~~~~Ve~lq~~~~~aL~~y~~~~~p~~~~~~R 213 (292)
T 2o4j_A 138 GHTLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRP----GVQDAKLVEAIQDRLSNTLQTYIRCRHPPPGSHQL 213 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTST----TCSCHHHHHHHHHHHHHHHHHHHHHHSCTTTTTTH
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhhH
Confidence 222 4556788999999999999999999999999999999 888999999999988555 443 77 89999
Q ss_pred ccccccccc-------------hhhhh--hcCCCccchhhhhhhcCC
Q psy1615 153 FGKPLPLNQ-------------HYTAT--ISNVPLSSSLSTAVQRGR 184 (295)
Q Consensus 153 f~~lLl~~~-------------y~~r~--~~~c~id~l~r~~~q~~r 184 (295)
|++||++++ ++.+. .++.+++.++.+++....
T Consensus 214 f~~LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~Ll~Eml~~~~ 260 (292)
T 2o4j_A 214 YAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLVLEVFGNEI 260 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTTSCHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCChhHHHHHHHcCCc
Confidence 999888763 23343 345678888888887543
No 29
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=99.97 E-value=3.1e-30 Score=221.34 Aligned_cols=175 Identities=32% Similarity=0.538 Sum_probs=145.3
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHH--HH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD--RV 79 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 79 (295)
.++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.++++++.|+++++.++. +++.+|..+...... ..
T Consensus 42 ~~~~l~~~~~~~l~~~vewak~ip~F~~L~~~DQ~~LLk~~w~e~~il~~a~rs~~~~~~-~~~~~g~~~~~~~~~~~~~ 120 (240)
T 2p1t_A 42 PVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG-ILLATGLHVHRNSAHSAGV 120 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHTTTSSSE-EECTTSCEEEHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCc-eEecCCcccccchhhhhch
Confidence 467899999999999999999999999999999999999999999999999999887655 455677655443221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCccc
Q psy1615 80 VAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFG 154 (295)
Q Consensus 80 ~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~ 154 (295)
..+.+ +.+.+++.+|++|++|++||+|||||+|||||++ |+++..+|+.+|+++..+ |+. |+++|.||+
T Consensus 121 ~~~~~--~~~~~~~~~l~~L~ld~~E~~~Lkai~l~~pd~~----gl~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf~ 194 (240)
T 2p1t_A 121 GAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK----GLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFA 194 (240)
T ss_dssp HHHHH--HHHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCT----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHH--HHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhHHH
Confidence 22322 4567899999999999999999999999999999 888999999999887444 443 899999999
Q ss_pred ccccccc-------------hhhhhhcCCCccchhhhhhhcC
Q psy1615 155 KPLPLNQ-------------HYTATISNVPLSSSLSTAVQRG 183 (295)
Q Consensus 155 ~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~~ 183 (295)
+||+.++ ++.+.++..+++.++.+++...
T Consensus 195 ~LL~~l~~Lr~~~~~~~e~l~~~~~~~~~~~~~ll~eml~~~ 236 (240)
T 2p1t_A 195 KLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP 236 (240)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHCCSCCCHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCCCCchHHHHHHHHcCC
Confidence 9888763 3456789999999999998764
No 30
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=99.97 E-value=8.4e-31 Score=227.36 Aligned_cols=175 Identities=19% Similarity=0.325 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCc-ceeecCCcccChhhHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA-PLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 81 (295)
++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++++.+.+ .+++.+|..+..... ...+
T Consensus 43 ~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~~~~~l~~~~~~~~~~~~~-~~~~ 121 (261)
T 1sqn_A 43 LTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRM-KESS 121 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECGGGC-CSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHhhHHHHHHHHHHHHhhhcCCCCeEEeCCCcccchHhh-hhhh
Confidence 57899999999999999999999999999999999999999999999999999877654 466677765544322 1234
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccC-CcccccccchhHHHHHHHHHHHHHH---Hhh-----CCCCCCc
Q psy1615 82 FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT-GKRIFTGVLLKALHVDSAEYSCLKA---IVL-----FTTGKRM 152 (295)
Q Consensus 82 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~p-d~~~l~~~l~~~~~i~~~q~~~l~~---l~~-----~~~~~~R 152 (295)
+.+.++.+.+++.+|++|++|++||+|||||+|||| |++ |+++...|+.+|+++..+ |+. ++++|.|
T Consensus 122 ~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~----gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~R 197 (261)
T 1sqn_A 122 FYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLE----GLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQR 197 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEECTT----CCTTHHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc----ccccHHHHHHHHHHHHHHHHHHHHhhCCCCCchHHH
Confidence 455667888999999999999999999999999999 899 888999999999988555 442 3467889
Q ss_pred ccccccccch-----------hhhhh-----cCCCccchhhhhhhc
Q psy1615 153 FGKPLPLNQH-----------YTATI-----SNVPLSSSLSTAVQR 182 (295)
Q Consensus 153 f~~lLl~~~y-----------~~r~~-----~~c~id~l~r~~~q~ 182 (295)
|++||++++. +.+.. ++.+++.++.+++..
T Consensus 198 f~~LL~~L~~Lr~~~~~~~~~~~~~~~q~~~~~~~~~~Ll~Ei~~~ 243 (261)
T 1sqn_A 198 FYQLTKLLDNLHDLVKQLHLYCLNTFIQSRALSVEFPEMMSEVIAA 243 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHhc
Confidence 9998887642 23444 667777777776654
No 31
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=99.97 E-value=2.9e-30 Score=228.23 Aligned_cols=154 Identities=17% Similarity=0.253 Sum_probs=126.4
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecC-CcccChhhHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAA-GLHASPMAADRVV 80 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (295)
.++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.|++ +..+...+++.+ +..+....... .
T Consensus 103 ~~~~l~e~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~el~lL~~a~~-~~~~~~~~l~~~~~~~~~~~~~~~-~ 180 (302)
T 2hc4_A 103 MLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIALLKSSAIEIIMLRSNQS-FSLEDMSWSCGGPDFKYCINDVTK-A 180 (302)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGT-EETTTTEEECSSSTTEECHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHH-hccCCCeEEecCCCeeecHHHHHH-c
Confidence 46899999999999999999999999999999999999999999999999965 444555566554 33333322111 1
Q ss_pred HH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCccc
Q psy1615 81 AF-MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFG 154 (295)
Q Consensus 81 ~~-~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~ 154 (295)
++ .+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++|.||+
T Consensus 181 g~~~~~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~----gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~RF~ 256 (302)
T 2hc4_A 181 GHTLELLEPLVKFQVGLKKLKLHEEEHVLLMAICLLSPDRP----GVQDHVRIEALQDRLCDVLQAYIRIQHPGGRLLYA 256 (302)
T ss_dssp TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSCST----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CCcCHHHHHHHHHHHHHHHHHHHHHHCCChhHHHH
Confidence 22 34557788999999999999999999999999999999 888999999999988554 443 899999999
Q ss_pred ccccccc
Q psy1615 155 KPLPLNQ 161 (295)
Q Consensus 155 ~lLl~~~ 161 (295)
+||++++
T Consensus 257 ~LLl~L~ 263 (302)
T 2hc4_A 257 KMIQKLA 263 (302)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 32
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=99.97 E-value=2.8e-30 Score=224.65 Aligned_cols=173 Identities=21% Similarity=0.240 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|+|+++|+.|+++... .+.+++++|..+..... ...++
T Consensus 70 ~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQi~LLk~~~~el~~L~~a~~~~~~-~~~l~~~~g~~~~~~~~-~~~g~ 147 (266)
T 2r40_D 70 FRQITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAA-TDSVLFANNQAYTRDNY-RKAGM 147 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEETT-TTEEECTTSCEECHHHH-HHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCeEEecCCceecHHHH-hhcCH
Confidence 67999999999999999999999999999999999999999999999999997654 45577788876654332 22344
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--C---CCCCCccc
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--F---TTGKRMFG 154 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~---~~~~~Rf~ 154 (295)
.+.++.+.+++.+|++|++|++||+|||||+||| |++ |+++...|+.+|+++..+ |+. | +++|.||+
T Consensus 148 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~n-d~~----gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~~Rf~ 222 (266)
T 2r40_D 148 AYVIEDLLHFCRCMYSMMMDNVHYALLTAIVIFS-DRP----GLEQPLLVEEIQRYYLNTLRVYILNQNSASPRCAVIFG 222 (266)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-CCT----TCSCHHHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHhhheeec-CCC----CCcCHHHHHHHHHHHHHHHHHHHHHhCCCCCchhhHHH
Confidence 4566778899999999999999999999999999 999 888999999999988554 443 6 78889999
Q ss_pred ccccccch-------------hhhhhcCCCccchhhhhhhcC
Q psy1615 155 KPLPLNQH-------------YTATISNVPLSSSLSTAVQRG 183 (295)
Q Consensus 155 ~lLl~~~y-------------~~r~~~~c~id~l~r~~~q~~ 183 (295)
+||++++. +.+..+ .+++.++.+++...
T Consensus 223 ~LL~~L~~Lr~l~~~~~e~l~~~~~~~-~~~~~Ll~Em~~~~ 263 (266)
T 2r40_D 223 KILGILTEIRTLGMQNSNMCISLKLKN-RKLPPFLEEIWDVA 263 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHhCCC
Confidence 98876532 223333 46666666666543
No 33
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=99.97 E-value=2.2e-30 Score=222.69 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
+..+++.+++.++.+|+|||++|+|.+|+.+||+.|||++|+|+++|+.|+++.+. .+.+++ +|..+..... ...+.
T Consensus 52 ~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~-~~~~~~-~g~~~~~~~~-~~~~~ 128 (244)
T 1nq7_A 52 WQQCAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPL-NNTVLF-EGKYGGMQMF-KALGS 128 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHHHHHHHHHHHHHHHHGGGEETT-TTEEEE-TTEEEEGGGG-GGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCC-CCEEeE-CCEEecHHHH-hhcCh
Confidence 57889999999999999999999999999999999999999999999999988654 445555 6655443322 11234
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcccccc
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKPL 157 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~lL 157 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++| ||++||
T Consensus 129 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~----gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~-Rf~~LL 203 (244)
T 1nq7_A 129 DDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLISPDRA----WLLEPRKVQKLQEKIYFALQHVIQKNHLDDE-TLAKLI 203 (244)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTST----TCSCHHHHHHHHHHHHHHHHHHHHHHCSCTT-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-HHHHHH
Confidence 45567788999999999999999999999999999999 888999999999988554 443 88888 999977
Q ss_pred cccc
Q psy1615 158 PLNQ 161 (295)
Q Consensus 158 l~~~ 161 (295)
++++
T Consensus 204 ~~L~ 207 (244)
T 1nq7_A 204 AKIP 207 (244)
T ss_dssp HTHH
T ss_pred HHHH
Confidence 7654
No 34
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=99.97 E-value=1.4e-30 Score=217.26 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++.+++.+++.+..+|+|||++|+|.+|+.+||+.|||++|.|+++++.|+++ ..+.+.+.+++|..+..... ...++
T Consensus 22 ~~~~~~~~~~~l~~~V~waK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~ 99 (199)
T 3cqv_A 22 WEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLF-DAKERTVTFLSGKKYSVDDL-HSMGA 99 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSGGGGGSCHHHHHHHHHHHHHHHHHHHTGGGE-ETTTTEEECTTSCEEEHHHH-HHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHh-CCCCCeEEecCCCeecHHHH-HhcCc
Confidence 67889999999999999999999999999999999999999999999999865 44556677788876654332 11233
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcccccc
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKPL 157 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~lL 157 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++|.||++||
T Consensus 100 ~~~~~~i~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~----gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~LL 175 (199)
T 3cqv_A 100 GDLLNSMFEFSEKLNALQLSDEEMSLFTAVVLVSADRS----GIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLL 175 (199)
T ss_dssp CHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTSCCT----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC----CCcCHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHH
Confidence 45566788999999999999999999999999999999 888999999999988555 443 899999999977
Q ss_pred cccchhhhhhcCCCccch
Q psy1615 158 PLNQHYTATISNVPLSSS 175 (295)
Q Consensus 158 l~~~y~~r~~~~c~id~l 175 (295)
+.++ ..|..++.+++.+
T Consensus 176 ~~L~-~Lr~l~~~~~E~l 192 (199)
T 3cqv_A 176 LKLP-DLRSLNNMHSEEL 192 (199)
T ss_dssp HHHH-HHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHH
Confidence 6655 4444444444443
No 35
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=99.96 E-value=5e-30 Score=220.26 Aligned_cols=168 Identities=21% Similarity=0.223 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++.+++.+++.+..+|+|||++|+|.+|+.+||+.|||++|+|+++|+.|+++ ..+.+.+++.+|..+....... .++
T Consensus 67 ~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~-~~~~~~l~~~~g~~~~~~~~~~-~~~ 144 (245)
T 3n00_A 67 WEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFEVLMVRFASLF-NVKDQTVMFLSRTTYSLQELGA-MGM 144 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTC-CSCC--------------CCGG-GTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCeEEecCCCeecHHHHhh-ccH
Confidence 57889999999999999999999999999999999999999999999999874 4455566777776554332211 234
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcccccc
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKPL 157 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~lL 157 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++|.||++||
T Consensus 145 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~----gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~RF~~LL 220 (245)
T 3n00_A 145 GDLLSAMFDFSEKLNSLALTEEELGLFTAVVLVSADRS----GMENSASVEQLQETLLRALRALVLKNRPLETSRFTKLL 220 (245)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCT----TCSSHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----CCccHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45567788999999999999999999999999999999 888999999999988555 443 899999999966
Q ss_pred cccchhhhhhcCCCccchhh
Q psy1615 158 PLNQHYTATISNVPLSSSLS 177 (295)
Q Consensus 158 l~~~y~~r~~~~c~id~l~r 177 (295)
++ +...|..+..+++.++.
T Consensus 221 l~-Lp~LR~l~~~~~E~L~~ 239 (245)
T 3n00_A 221 LK-LPDLRTLNNMHSEKLLS 239 (245)
T ss_dssp TH-HHHHHHHHHHHTTCEEE
T ss_pred HH-hHHHHHHHHHHHHHHHH
Confidence 54 45566666666665543
No 36
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=99.96 E-value=3.2e-30 Score=222.07 Aligned_cols=153 Identities=15% Similarity=0.256 Sum_probs=125.1
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
.++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.|+++..... .+ ..++..+... .....+
T Consensus 55 ~~~~~~e~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~l~~a~~~~~~~~-~~-~~~~~~~~~~-~~~~~~ 131 (246)
T 1xvp_B 55 LVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQ-NF-LCGPLRYTIE-DGARVG 131 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHSCHHHHHHHHHHHHHHHHHHHHGGGEETTTT-EE-ECSSCEECHH-HHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHHHHHhhHHHHHHHHHHHHhccccC-eE-eeCCeeecHH-HHHHcc
Confidence 36799999999999999999999999999999999999999999999999999876443 33 3333333322 112223
Q ss_pred HH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHH---HHhh----CCCCCCcc
Q psy1615 82 FM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLK---AIVL----FTTGKRMF 153 (295)
Q Consensus 82 ~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~---~l~~----~~~~~~Rf 153 (295)
+. +.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++.. .|+. ++++|.||
T Consensus 132 ~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~----gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~rf 207 (246)
T 1xvp_B 132 FQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRP----GVTQRDEIDQLQEEMALTLQSYIKGQQRRPRDRFLY 207 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCSSST----TCSCHHHHHHHHHHHHHHHHHHHHTCSSCCSCSSHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHH
Confidence 33 4556788999999999999999999999999999999 88899999999998744 4554 57889999
Q ss_pred cccccccc
Q psy1615 154 GKPLPLNQ 161 (295)
Q Consensus 154 ~~lLl~~~ 161 (295)
++||++++
T Consensus 208 ~~LL~~L~ 215 (246)
T 1xvp_B 208 AKLLGLLA 215 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887664
No 37
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=99.96 E-value=1.3e-29 Score=221.34 Aligned_cols=171 Identities=23% Similarity=0.313 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++++|+++++.++.+|+|||++|+|.+|+.+||++|||++|.|+++|+.||+++..+ +.+++.+|..+..... ..++
T Consensus 76 ~~~~~~~~~~~l~~~v~waK~ip~F~~L~~~DQ~~LLk~~~~el~~L~~a~~s~~~~-~~l~~~~g~~~~~~~~--~~~~ 152 (271)
T 1ovl_A 76 IQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVE-GKLIFCNGVVLHRLQC--VRGF 152 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBTTT-TEEECTTSBEEEHHHH--TTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCChHHHHHHHHHhHHHHHHHHHHHHhcCCC-CeEEeeCCeeecHHHH--HhhH
Confidence 678999999999999999999999999999999999999999999999999998865 4677778766544321 1233
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh----CCCCCCcccc
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL----FTTGKRMFGK 155 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~----~~~~~~Rf~~ 155 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||| ++ |+++...|+.+|+++..+ |+. ++++|.||++
T Consensus 153 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivL~~~-~~----gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~~Rf~~ 227 (271)
T 1ovl_A 153 GEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVTE-RH----GLKEPKRVEELQNKIVNCLKDHVTFNNGGLNRPNYLSK 227 (271)
T ss_dssp TTHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSSC-CT----TCSCHHHHHHHHHHHHHHHHHHHHGGGTTTTSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC----CCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccccHHHH
Confidence 45566778999999999999999999999999995 77 788999999999988555 443 4688999999
Q ss_pred cccccc-------------hhhhhhcCCCccchhhhhhh
Q psy1615 156 PLPLNQ-------------HYTATISNVPLSSSLSTAVQ 181 (295)
Q Consensus 156 lLl~~~-------------y~~r~~~~c~id~l~r~~~q 181 (295)
||+.++ ++.+..+..+++.++.+.+.
T Consensus 228 LL~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~Ll~el~~ 266 (271)
T 1ovl_A 228 LLGKLPELRTLCTQGLQRIFYLKLEDLVPPPAIIDKLFL 266 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 887653 33455667777766666654
No 38
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=99.96 E-value=1.1e-29 Score=221.33 Aligned_cols=173 Identities=16% Similarity=0.141 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
++.+|+.+++.++.+|+|||++|+|.+|+.+||+.|||++|+|+++|+.|+++... .+.+++ +|...... .....+.
T Consensus 67 ~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~-~~~~l~-~g~~~~~~-~~~~~~~ 143 (270)
T 1n83_A 67 WQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQ-NNTVYF-DGKYASPD-VFKSLGC 143 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTTTTSCHHHHHHHHHHHHHHHHHHHGGGGEETT-TTEEEE-TTEEECGG-GGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhhcCHHHHHHHHHHhHHHHHHHHHHHHhcCC-CCeEEe-CCccccHH-HHHhcCH
Confidence 67899999999999999999999999999999999999999999999999997654 444555 34332222 1112234
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcccccc
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKPL 157 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~lL 157 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+ +|.||++||
T Consensus 144 ~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~----gL~~~~~ve~lq~~~~~aL~~y~~~~~~-~~~Rf~~LL 218 (270)
T 1n83_A 144 EDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRS----WLQEKVKIEKLQQKIQLALQHVLQKNHR-EDGILTKLI 218 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTST----TCSCHHHHHHHHHHHHHHHHHHHHHHCT-TSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCC-chhHHHHHH
Confidence 45667788999999999999999999999999999999 888999999999988555 443 65 689999988
Q ss_pred cccch-------------hhhhhcC----CCccchhhhhhhcC
Q psy1615 158 PLNQH-------------YTATISN----VPLSSSLSTAVQRG 183 (295)
Q Consensus 158 l~~~y-------------~~r~~~~----c~id~l~r~~~q~~ 183 (295)
++++. +.+..+. .+++.++.+++...
T Consensus 219 ~~L~~Lr~l~~~~~e~l~~~~~~~~~~~~~~~~~Ll~Em~~~~ 261 (270)
T 1n83_A 219 CKVSTLRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSE 261 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccCCcCHHHHHHhCCC
Confidence 76642 2233332 36777777776654
No 39
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=99.96 E-value=3e-30 Score=228.80 Aligned_cols=172 Identities=17% Similarity=0.174 Sum_probs=136.6
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
.++++|+++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.|+++.... +.+++.+ ..+..... ..+
T Consensus 121 ~~~~l~e~~~~~L~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~~~~~~~-~~~l~~~-~~~~~~~~--~~g 196 (316)
T 1nrl_A 121 LLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNAET-GTWECGR-LSYCLEDT--AGG 196 (316)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTEETTT-TEEEETT-EEEEECCC--SSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CeEEECC-EeecHHHH--hcc
Confidence 4789999999999999999999999999999999999999999999999999887544 4444433 33322211 112
Q ss_pred HH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CC--CCCCcc
Q psy1615 82 FM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FT--TGKRMF 153 (295)
Q Consensus 82 ~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~--~~~~Rf 153 (295)
+. +.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+ ++|.||
T Consensus 197 ~~~~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~----gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~~~RF 272 (316)
T 1nrl_A 197 FQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLFSPDRP----GVLQHRVVDQLQEQFAITLKSYIECNRPQPAHRFLF 272 (316)
T ss_dssp HHHHTTSHHHHHHHHHHHTCCCHHHHHHHHHHHHTCTTST----TCSCHHHHHHHHHHHHHHHHHHHHHHCCSGGGTTHH
T ss_pred ccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC----CCccHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHH
Confidence 33 4456777999999999999999999999999999999 888999999999988554 443 77 899999
Q ss_pred cccccccc-------------hhhhhhcCCCccchhhhhhhc
Q psy1615 154 GKPLPLNQ-------------HYTATISNVPLSSSLSTAVQR 182 (295)
Q Consensus 154 ~~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~ 182 (295)
++||++++ ++.+..+. +++.++.+++..
T Consensus 273 ~kLLl~Lp~LR~l~~~~~e~l~~~k~~~~-~i~~Ll~Eml~~ 313 (316)
T 1nrl_A 273 LKIMAMLTELRSINAQHTQRLLRIQDIHP-FATPLMQELFGI 313 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCCHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHcC
Confidence 99887653 23344444 777777777653
No 40
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=99.96 E-value=8.1e-30 Score=223.70 Aligned_cols=153 Identities=22% Similarity=0.297 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
+.++++++.+.+..+|+|||++|+|.+|+.+||+.|||++|+++++|+.|+++.. +.+.+.+.+|..+....... .++
T Consensus 90 ~~~l~e~~~~~l~~~VewaK~lP~F~~L~~~DQ~~LLk~~~~el~lL~~a~~~~~-~~~~~~~~~g~~~~~~~~~~-~g~ 167 (283)
T 3ipq_A 90 FAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNP-GSESITFLKDFSYNREDFAK-AGL 167 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEET-TTTEEEETTTEEECHHHHHH-TTC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcChhhCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCeEEeCCCceecHHHHHH-cCC
Confidence 6789999999999999999999999999999999999999999999999988764 34556677777665433221 122
Q ss_pred -HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCccccc
Q psy1615 83 -MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKP 156 (295)
Q Consensus 83 -~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~l 156 (295)
.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++|.||++|
T Consensus 168 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~----gL~~~~~ve~lq~~~~~aL~~y~~~~~p~~~~Rf~~L 243 (283)
T 3ipq_A 168 QVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRP----NVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRM 243 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCTTST----TCSCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----CCCcHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 24456788999999999999999999999999999999 888999999999988554 443 89999999997
Q ss_pred ccccc
Q psy1615 157 LPLNQ 161 (295)
Q Consensus 157 Ll~~~ 161 (295)
|++++
T Consensus 244 L~~Lp 248 (283)
T 3ipq_A 244 LMKLV 248 (283)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 41
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=99.96 E-value=4.1e-30 Score=222.84 Aligned_cols=155 Identities=20% Similarity=0.270 Sum_probs=129.1
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCC-cceeecCCcccChhhHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV-APLLAAAGLHASPMAADRVV 80 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 80 (295)
.++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++++.+. +.+++.+|..+..... ...
T Consensus 41 ~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~rs~~~~~~~~l~~~~g~~~~~~~~-~~~ 119 (260)
T 3vhv_A 41 LLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKM-HQS 119 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHH-HHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHhcCCHHHHHHHHHHhHHHHHHHHHHHHhhccCCCCeEEecCCccccHHHh-hcc
Confidence 46899999999999999999999999999999999999999999999999999987654 4677788876654332 223
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccC-CcccccccchhHHHHHHHHHHHHHH---Hhh--CCCC---CC
Q psy1615 81 AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT-GKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTG---KR 151 (295)
Q Consensus 81 ~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~p-d~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~---~~ 151 (295)
++.+.++.+.+++.+|++|++|++||+|||||+|||| |++ |+++...|+.+|+++..+ |+. |++. |.
T Consensus 120 ~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvLfnp~d~~----gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~~~~~~ 195 (260)
T 3vhv_A 120 AMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKD----GLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQ 195 (260)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETT----CCTTHHHHHHHHHHHHHHHHHHHHC-----CCHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCcCCC----CCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCcHhh
Confidence 4456667889999999999999999999999999999 999 899999999999998555 443 5555 68
Q ss_pred cccccccccc
Q psy1615 152 MFGKPLPLNQ 161 (295)
Q Consensus 152 Rf~~lLl~~~ 161 (295)
||++||++++
T Consensus 196 RF~~LL~~Lp 205 (260)
T 3vhv_A 196 RFYQLTKLLD 205 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999777654
No 42
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=99.96 E-value=2.4e-30 Score=225.48 Aligned_cols=154 Identities=23% Similarity=0.347 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCc-ceeecCCcccChhhHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA-PLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 81 (295)
++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++++.+.+ .+++.+|..+...... ..+
T Consensus 51 ~~~l~e~a~~~l~~~VewAK~ip~F~~L~~~DQv~LLk~~w~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~~-~~~ 129 (269)
T 1t7r_A 51 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSRMLYFAPDLVFNEYRMH-KSR 129 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHHH-HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCCCeEEeCCCceecHHhhh-hhh
Confidence 67899999999999999999999999999999999999999999999999999876554 5777777665543321 223
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccC-CcccccccchhHHHHHHHHHHHHHH---Hhh-----CCCCCCc
Q psy1615 82 FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT-GKRIFTGVLLKALHVDSAEYSCLKA---IVL-----FTTGKRM 152 (295)
Q Consensus 82 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~p-d~~~l~~~l~~~~~i~~~q~~~l~~---l~~-----~~~~~~R 152 (295)
+.+.++.+.+++.+|++|++|++||+|||||+|||| |++ |+++...|+.+|+++..+ |+. ++++|.|
T Consensus 130 ~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~----gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~R 205 (269)
T 1t7r_A 130 MYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSIIPVD----GLKNQKFFDELRMNYIKELDRIIACKRKNPTSCSRR 205 (269)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTSEEETT----CCTTHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccC----CCccHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHH
Confidence 335556788999999999999999999999999999 899 888999999999988555 443 2356789
Q ss_pred ccccccccc
Q psy1615 153 FGKPLPLNQ 161 (295)
Q Consensus 153 f~~lLl~~~ 161 (295)
|++||++++
T Consensus 206 f~~LL~~L~ 214 (269)
T 1t7r_A 206 FYQLTKLLD 214 (269)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887764
No 43
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=99.96 E-value=2.7e-30 Score=224.01 Aligned_cols=169 Identities=22% Similarity=0.290 Sum_probs=135.4
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCc-ceeecCCcccChhhHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA-PLLAAAGLHASPMAADRVV 80 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 80 (295)
.++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++++.+.+ .+.+.+|..+.+... ...
T Consensus 43 ~~~~l~~~a~~~l~~~VewaK~iP~F~~L~~~DQ~~LLk~~~~el~iL~~a~rs~~~~~~~~l~~~~g~~~~~~~~-~~~ 121 (261)
T 3mnp_A 43 IMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMVFALGWRSYRQASGNLLCFAPDLIINEQRM-TLP 121 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHH-TST
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCEEEecCCcccchhhh-hhh
Confidence 468899999999999999999999999999999999999999999999999999876655 467777766554322 112
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccC-CcccccccchhHHHHHHHHHHHHHH---Hhh--CCC---CCC
Q psy1615 81 AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT-GKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTT---GKR 151 (295)
Q Consensus 81 ~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~p-d~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~---~~~ 151 (295)
++.+.++.+.+++.+|++|++|++||+|||||+|||| |++ |+++..+|+.+|+++..+ |+. |++ +|.
T Consensus 122 ~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAIvL~np~d~~----gL~~~~~ve~lq~~~~~aL~~y~~~~~~~~~~~~~ 197 (261)
T 3mnp_A 122 CMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKE----GLKSQELFDEIRMTYIKELGKAIAKRGGNSSQNWQ 197 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETT----CCTTHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCcC----CCccHHHHHHHHHHHHHHHHHHHHhhCCCCchhhh
Confidence 3445567788999999999999999999999999999 999 888999999999988555 443 553 478
Q ss_pred cccccccccchhhhhhcCCCccchh
Q psy1615 152 MFGKPLPLNQHYTATISNVPLSSSL 176 (295)
Q Consensus 152 Rf~~lLl~~~y~~r~~~~c~id~l~ 176 (295)
||++||++++. .|.......+.++
T Consensus 198 Rf~~LL~lL~~-Lr~l~~~~~e~~f 221 (261)
T 3mnp_A 198 RFYQLTKLLDS-MHDVVENLLSYCF 221 (261)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99997766543 3333333333333
No 44
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=99.96 E-value=2e-29 Score=217.05 Aligned_cols=168 Identities=17% Similarity=0.145 Sum_probs=132.9
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
.++++|+.+++.++.+|+|||++|+|.+|+.+||+.|||++|+|+++|+.|+++... .+.+++ +|..... ......+
T Consensus 57 ~~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~~-~~~~~~-~g~~~~~-~~~~~~~ 133 (248)
T 3l0l_A 57 MWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNAD-NRTVFF-EGKYGGM-ELFRALG 133 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHGGGGEETT-TTEEEE-TTEEECG-GGGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcCC-CCEEEe-CCCcccH-HHHhhcc
Confidence 367899999999999999999999999999999999999999999999999887654 344555 4433322 2222234
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---HhhCCCCCCccccccc
Q psy1615 82 FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVLFTTGKRMFGKPLP 158 (295)
Q Consensus 82 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~~~~~~~Rf~~lLl 158 (295)
..+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+.....|.||++||+
T Consensus 134 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~----gL~~~~~ve~lqe~~~~aL~~y~~~~~~~~rf~~LLl 209 (248)
T 3l0l_A 134 CSELISSIFDFSHSLSALHFSEDEIALYTALVLINAHRP----GLQEKRKVEQLQYNLELAFHHHLCKTHRQSILAKLPP 209 (248)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCT----TCSCHHHHHHHHHHHHHHHHHHHHHTTCGGGGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----CCccHHHHHHHHHHHHHHHHHHHHhhChHHHHHHhhc
Confidence 455667788999999999999999999999999999999 899999999999988555 4442235789999776
Q ss_pred ccchhhhhhcCCCccchhhh
Q psy1615 159 LNQHYTATISNVPLSSSLST 178 (295)
Q Consensus 159 ~~~y~~r~~~~c~id~l~r~ 178 (295)
+ ...|..++.+++.++..
T Consensus 210 ~--p~LR~i~~~~~e~l~~~ 227 (248)
T 3l0l_A 210 K--GKLRSLCSQHVERLQIF 227 (248)
T ss_dssp T--THHHHHHHHHHHHHHHH
T ss_pred c--HHHHHHHHHHHHHHHHH
Confidence 6 55555666666655443
No 45
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=99.96 E-value=8.4e-30 Score=217.55 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=120.0
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
.+.++++++++.++.+|+|||++|+|.+|+.+||+.|||++|.++++|+.|+++..... .+|..+.+.... ..+
T Consensus 43 ~~~~~~~~~~~~l~~~vewaK~lp~F~~L~~~DQ~~LLk~~~~e~~~l~~a~~~~~~~~-----~~~~~~~~~~~~-~~~ 116 (232)
T 1osh_A 43 NFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP-----SGHSDLLEERIR-NSG 116 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-----HHHHHHHHHHHH-TSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhCCccC-----CCCceecHHHHH-HcC
Confidence 46789999999999999999999999999999999999999999999999987643211 112111111100 011
Q ss_pred HH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcccc
Q psy1615 82 FM-DHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGK 155 (295)
Q Consensus 82 ~~-~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~ 155 (295)
+. +.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. ||++|.||++
T Consensus 117 ~~~~~~~~i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~----gL~~~~~v~~~q~~~~~aL~~y~~~~~~~~~~Rf~~ 192 (232)
T 1osh_A 117 ISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQ----YIKDREAVEKLQEPLLDVLQKLCKIHQPENPQHFAC 192 (232)
T ss_dssp CCTTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTCT----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC----CCCChHHHHHHHHHHHHHHHHHHHHHCCCchhHHHH
Confidence 11 2346778899999999999999999999999999999 788999999999987544 544 8999999999
Q ss_pred cccccc
Q psy1615 156 PLPLNQ 161 (295)
Q Consensus 156 lLl~~~ 161 (295)
||+.++
T Consensus 193 LL~~L~ 198 (232)
T 1osh_A 193 LLGRLT 198 (232)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877664
No 46
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=99.96 E-value=4.5e-29 Score=220.99 Aligned_cols=152 Identities=24% Similarity=0.309 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHHH
Q psy1615 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVAF 82 (295)
Q Consensus 3 ~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
+.++++++++.++.+|+|||++|+|.+|+.+||+.|||++|+|+++|+.||++.. ..+.+++++|..+..... ...++
T Consensus 118 ~~~l~el~~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~w~el~lL~~a~rs~~-~~~~l~~~~g~~~~~~~~-~~~g~ 195 (310)
T 1z5x_E 118 FRHITEITILTVQLIVEFSKRLPGFDKLIREDQIALLKACSSEVMMFRMARRYDA-ETDSILFATNQPYTRESY-TVAGM 195 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEET-TTTEEECTTSCEECHHHH-HHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeCCCccccHHHH-Hhcch
Confidence 6789999999999999999999999999999999999999999999999999876 455677788876654322 22344
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--C-CCCCCccccc
Q psy1615 83 MDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--F-TTGKRMFGKP 156 (295)
Q Consensus 83 ~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~-~~~~~Rf~~l 156 (295)
.+.++.+.+++.+|++|++|++||+|||||+||| |++ |+++...|+.+|+++..+ |+. | +++|.||++|
T Consensus 196 ~~~~~~i~~~~~~l~~L~ld~~E~alLkAIvLf~-d~~----gL~~~~~Ve~lqe~~~~aL~~y~~~~~~~~~~~RF~kL 270 (310)
T 1z5x_E 196 GDTVEDLLRFCRHMCAMKVDNAEYALLTAIVIFS-ERP----SLSEGWKVEKIQEIYIEALKAYVENRRKPYATTIFAKL 270 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTC-CCT----TCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCC----CCccHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4666778899999999999999999999999997 999 899999999999998555 443 4 5678899998
Q ss_pred ccccc
Q psy1615 157 LPLNQ 161 (295)
Q Consensus 157 Ll~~~ 161 (295)
|++++
T Consensus 271 Ll~Lp 275 (310)
T 1z5x_E 271 LSVLT 275 (310)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87664
No 47
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=221.63 Aligned_cols=155 Identities=20% Similarity=0.271 Sum_probs=128.9
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCC-cceeecCCcccChhhHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV-APLLAAAGLHASPMAADRVV 80 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 80 (295)
.++++|+++++.++.+|+|||++|+|.+|+.+||+.|||++|.|+++|+.||++++.+. +.+++.+|..+..... ...
T Consensus 75 ~~~~l~e~a~~~l~~~VewAK~lP~F~~L~~~DQi~LLk~~~~el~lL~~a~rS~~~~~~~~l~~~~g~~~~~~~~-~~~ 153 (294)
T 3vhu_A 75 LLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQITLIQYSWMSLLSFALSWRSYKHTNSQFLYFAPDLVFNEEKM-HQS 153 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEETTEEECHHHH-HHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHhHHHHHHHHHHHHhhhcCCCCeEEeCCCccccHHHh-hcc
Confidence 46899999999999999999999999999999999999999999999999999987654 4677788876654332 122
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccC-CcccccccchhHHHHHHHHHHHHHHH---hh--CCCC---CC
Q psy1615 81 AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT-GKRIFTGVLLKALHVDSAEYSCLKAI---VL--FTTG---KR 151 (295)
Q Consensus 81 ~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~p-d~~~l~~~l~~~~~i~~~q~~~l~~l---~~--~~~~---~~ 151 (295)
++.+.++.+.+++.+|++|++|++||+|||||+|||| |++ |+++...|+.+|+++..+| +. +++. |.
T Consensus 154 ~~~~~~~~l~~~~~~l~~L~ld~~EyalLkAIvLfnp~d~~----gL~~~~~Ve~lQe~~~~aL~~y~~~~~~~~~~~~~ 229 (294)
T 3vhu_A 154 AMYELCQGMHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKD----GLKSQAAFEEMRTNYIKELRKMVTKCPNNSGQSWQ 229 (294)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETT----CCTTHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----CCCcHHHHHHHHHHHHHHHHHHHHhcCCCCccHhH
Confidence 4456667889999999999999999999999999999 999 8999999999999986554 43 4444 68
Q ss_pred cccccccccc
Q psy1615 152 MFGKPLPLNQ 161 (295)
Q Consensus 152 Rf~~lLl~~~ 161 (295)
||++||++++
T Consensus 230 RF~~LL~lLp 239 (294)
T 3vhu_A 230 RFYQLTKLLD 239 (294)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999777654
No 48
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.96 E-value=4.7e-29 Score=214.88 Aligned_cols=153 Identities=24% Similarity=0.301 Sum_probs=128.5
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHHHHHH
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADRVVA 81 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
.+.++++++.+.+..+|+|||++|+|.+|+.+||+.|||++|.|+++|+.|+++.. +.+.+++++|..+..... ...+
T Consensus 53 ~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~LLk~~~~el~~L~~a~~~~~-~~~~~~~~~g~~~~~~~~-~~~~ 130 (248)
T 2nxx_E 53 RFRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDV-QTDSILFVNNQPYSRDSY-NLAG 130 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTEET-TTTEEECTTSCEECHHHH-HHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhhCCHHHHHHHHHHhHHHHHHHHHHHHhcC-CCCeEEecCCceecHHHH-Hhcc
Confidence 36789999999999999999999999999999999999999999999999999765 455677788876654322 2223
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--C-CCCCCcccc
Q psy1615 82 FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--F-TTGKRMFGK 155 (295)
Q Consensus 82 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~-~~~~~Rf~~ 155 (295)
+.+.++.+.+++.+|++|++|++||+|||||+||| |++ |+++...|+.+|+++..+ |+. | +++|.||++
T Consensus 131 ~~~~~~~i~~~~~~l~~L~ld~~E~~lLkAivL~~-d~~----gL~~~~~v~~lq~~~~~aL~~y~~~~~~~~~~~Rf~~ 205 (248)
T 2nxx_E 131 MGETIEDLLHFCRTMYSMRVDNAEYALLTAIVIFS-ERP----ALIEGWKVEKIQEIYLEALRAYVDNRRKPKPGTIFAK 205 (248)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTC-CCS----SCTTHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 44566778899999999999999999999999997 898 888999999999988555 443 5 558889999
Q ss_pred cccccc
Q psy1615 156 PLPLNQ 161 (295)
Q Consensus 156 lLl~~~ 161 (295)
||++++
T Consensus 206 LL~~L~ 211 (248)
T 2nxx_E 206 LLSVLT 211 (248)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 49
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=99.96 E-value=1.9e-28 Score=209.76 Aligned_cols=176 Identities=26% Similarity=0.365 Sum_probs=143.6
Q ss_pred CcHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhH--HH
Q psy1615 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAA--DR 78 (295)
Q Consensus 1 ~~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~ 78 (295)
++++++++++.+.++.+|+|||++|+|..|+.+||+.|||++|.++++|+.|+++... .+.+++++|..+..... ..
T Consensus 41 ~~~~~~~~~~~~~l~~~v~wak~~p~F~~L~~~DQ~~LLk~~~~~~~~L~~a~~s~~~-~~~~~~~~g~~~~~~~~~~~~ 119 (237)
T 1pzl_A 41 ASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVF-KDVLLLGNDYIVPRHCPELAE 119 (237)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHSHHHHHHHHHHHHHTTS-SSEEECTTSCEEESSCGGGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCceeecCCcccCccchhhhh
Confidence 4688999999999999999999999999999999999999999999999999999874 44556666654432211 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcc
Q psy1615 79 VVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMF 153 (295)
Q Consensus 79 ~~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf 153 (295)
...+.. +.+.+++.+|++|++|++||++||||+||+||++ |+++...++.+|+.+..+ |+. ++++|.||
T Consensus 120 ~~~~~~--~~~~~l~~~l~~L~ld~~E~~~L~ai~l~~~~~~----~l~~~~~ve~~q~~~~~~L~~y~~~~~~~~~~Rf 193 (237)
T 1pzl_A 120 MSRVSI--RILDELVLPFQELQIDDNEYAYLKAIIFFDPDAK----GLSDPGKIKRLRSQVQVSLEDYINDRQYDSRGRF 193 (237)
T ss_dssp GHHHHH--HHHHHTHHHHHHHTCCHHHHHHHHHHHHCCTTCT----TCSCHHHHHHHHHHHHHHHHHHHHSSSSCCTTHH
T ss_pred hHHHHH--HHHHHHHHHHHhhCCCHHHHHHHHHHHHhCCCCC----CCCcHHHHHHHHHHHHHHHHHHHHhcCCChhhHH
Confidence 222222 4466899999999999999999999999999999 788889999999987444 443 78889999
Q ss_pred cccccccc-------------hhhhhhcCCCccchhhhhhhcC
Q psy1615 154 GKPLPLNQ-------------HYTATISNVPLSSSLSTAVQRG 183 (295)
Q Consensus 154 ~~lLl~~~-------------y~~r~~~~c~id~l~r~~~q~~ 183 (295)
++||+.++ ++++..+..+++.++.+++..+
T Consensus 194 ~~LL~~l~~lr~~~~~~~e~l~~~~~~~~~~~~~l~~em~~~~ 236 (237)
T 1pzl_A 194 GELLLLLPTLQSITWQMIEQIQFIKLFGMAKIDNLLQEMLLGG 236 (237)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhCCCcHHHHHHHHHcCC
Confidence 99888763 4456778899999999988754
No 50
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=99.96 E-value=5.6e-30 Score=219.56 Aligned_cols=169 Identities=12% Similarity=0.072 Sum_probs=129.3
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcce--eecCCcccChhhHHH-
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL--LAAAGLHASPMAADR- 78 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~- 78 (295)
+.+++++++++.++.+|+|||++|+|.+|+.+||++|||++|+|+++|+.|+++.+...... .+.++..+.......
T Consensus 42 ~p~~l~~l~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (243)
T 3up3_A 42 SPADIMNIMDVTMRRFVKMAKRLPAFNDLSQDGKFALLKGGMIEMLTVRGVRRFDSSSGSWTTPTLGESSEVSINMFDQL 121 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHEETTTTEECCTTSCTTCCEEGGGGGGS
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHhHHHHHHHHHHHHhcccCCeeeecccCCCccccHHHHhhh
Confidence 45689999999999999999999999999999999999999999999999999876554421 223444333221111
Q ss_pred HHHHHH-HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHhccCCcccccccchh---HHHHHHHHHHHH---HHHhh--C-C
Q psy1615 79 VVAFMD-HIRVFQEQVEKLKA-LHVDSAEYSCLKAIVLFTTGKRIFTGVLLK---ALHVDSAEYSCL---KAIVL--F-T 147 (295)
Q Consensus 79 ~~~~~~-~~~~l~~~~~~l~~-L~ld~~E~~lLkai~L~~pd~~~l~~~l~~---~~~i~~~q~~~l---~~l~~--~-~ 147 (295)
..++.+ .++.+.+++.+|+. |++|++||+|||||+||||| + |+++ ...|+.+|+++. ..|+. | |
T Consensus 122 ~~g~~~~~~~~l~~~~~~~~~~L~ld~~E~alLkAivLfsp~-~----gL~~~~~~~~Ve~lQe~~~~aL~~y~~~~~~p 196 (243)
T 3up3_A 122 NADVRSEQKMRFLQFFKIFHEDIRSNDLVISMIMLIVLFSPR-D----SITDPEDRRIIARHHEQFSALLNRYLESLYGD 196 (243)
T ss_dssp CTTTHHHHHHHHHHHHHTSCHHHHTCHHHHHHHHHHHHSCCC-T----TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcCCC-C----CCCCcchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 123444 45778899999997 99999999999999999999 8 6754 489999999874 44553 5 7
Q ss_pred CCCCcccccccccchhhhhhcCCCccchhh
Q psy1615 148 TGKRMFGKPLPLNQHYTATISNVPLSSSLS 177 (295)
Q Consensus 148 ~~~~Rf~~lLl~~~y~~r~~~~c~id~l~r 177 (295)
++|.||++||+.++ ..|.++. +++.++.
T Consensus 197 ~~~~rf~kLL~~Lp-~LR~i~~-~~e~lf~ 224 (243)
T 3up3_A 197 DAHQLNEQLPTALR-MLREISA-SSGMLFL 224 (243)
T ss_dssp GHHHHHHHHHHHHH-HHHHHHH-TCTTTTT
T ss_pred ChhHHHHHHHHHHH-HHHHHHH-HHHHHHh
Confidence 88999999665554 4555555 5555544
No 51
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=99.96 E-value=1.1e-28 Score=214.67 Aligned_cols=171 Identities=19% Similarity=0.250 Sum_probs=130.6
Q ss_pred HHHHHHHHHH-HHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCccc-ChhhHHHH-H
Q psy1615 4 DNICELAARL-LFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHA-SPMAADRV-V 80 (295)
Q Consensus 4 ~~~~~~~~~~-l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~ 80 (295)
.++|+.+.+. ++.+|+|||++|+|.+|+.+||+.|||++|+|+++|+.|+++.+ +.+++.+|... ........ .
T Consensus 75 ~~~c~~~~~~~v~~~VewAK~iP~F~~L~~~DQi~LLk~~~~el~lL~~a~~~~~---~~~~~~~g~~~~~~~~~~~~~~ 151 (269)
T 3u9q_A 75 FQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK---DGVLISEGQGFMTREFLKSLRK 151 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHTEET---TEEEETTTTEEEEHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCChhhcCHHHHHHHHHHhhHHHHHHHHHHhcCC---CCeEEeCCCccccHHHHHHhhh
Confidence 4678788776 67899999999999999999999999999999999999976532 33455555442 22211111 1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcccc
Q psy1615 81 AFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGK 155 (295)
Q Consensus 81 ~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~ 155 (295)
++.+.++.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. ||++|.||++
T Consensus 152 ~~~~~~~~l~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~----gL~~~~~Ve~lqe~~~~aL~~y~~~~~p~~~~Rf~k 227 (269)
T 3u9q_A 152 PFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP----GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAK 227 (269)
T ss_dssp TGGGSSHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCTTST----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTSTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhCCCCC----CCccHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 2334456778999999999999999999999999999999 899999999999988544 544 8999999999
Q ss_pred cccccchh-------------h-hhhcCCCccchhhhhhh
Q psy1615 156 PLPLNQHY-------------T-ATISNVPLSSSLSTAVQ 181 (295)
Q Consensus 156 lLl~~~y~-------------~-r~~~~c~id~l~r~~~q 181 (295)
||+.++.. . ...++.++..++.+++.
T Consensus 228 LL~~Lp~LR~i~~~~~~~l~~~k~~~~~~~~~~Ll~Em~~ 267 (269)
T 3u9q_A 228 LLQKMTDLRQIVTEHVQLLQVIKKTETDMSLHPLLQEIYK 267 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHS
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhCcCCCCCcCHHHHHHHh
Confidence 88776321 1 12345566666666653
No 52
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.96 E-value=1.8e-28 Score=228.21 Aligned_cols=173 Identities=32% Similarity=0.528 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccChhhHH--HHHH
Q psy1615 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAAD--RVVA 81 (295)
Q Consensus 4 ~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 81 (295)
.++++++++.++.+|+|||+||+|.+|+.+||+.|||++|.|+++++.|++++..++.. ++.+|..+...... .+..
T Consensus 271 ~~l~e~a~~~L~~vVeWAK~iP~F~~L~~~DQi~LLK~~w~elliL~~a~rs~~~~~~~-ll~~g~~i~~~~~~~~~~~~ 349 (467)
T 3dzy_A 271 TNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI-LLATGLHVHRNSAHSAGVGA 349 (467)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHHHHHHHHHHHHHHHHHHHTSSSTTBC-CCSSSCCCBTHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHHHHHhHHHHHHHHHHHHHhccCCCce-EecCCceechhhhhhhcchH
Confidence 46799999999999999999999999999999999999999999999999998766554 44677665543321 1122
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCccccc
Q psy1615 82 FMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKP 156 (295)
Q Consensus 82 ~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~l 156 (295)
+.+ +.+.+++.+|++|++|++||+|||||+|||||++ |+++...|+.+|+++..+ |+. |+++|.||++|
T Consensus 350 ~~~--~il~~lv~~l~~L~ld~~E~~lLkAIvLfnpd~~----gL~~~~~Ve~lQe~~~~aL~~Y~~~~~p~~p~Rf~kL 423 (467)
T 3dzy_A 350 IFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSK----GLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKL 423 (467)
T ss_dssp HHH--HHHHHTHHHHHHHTCCHHHHHHHHHHHHSCTTST----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCC----CCCCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 333 4556999999999999999999999999999999 788899999999987444 443 88999999998
Q ss_pred cccc-------------chhhhhhcCCCccchhhhhhhcC
Q psy1615 157 LPLN-------------QHYTATISNVPLSSSLSTAVQRG 183 (295)
Q Consensus 157 Ll~~-------------~y~~r~~~~c~id~l~r~~~q~~ 183 (295)
|+++ +++.+.++..+|+.++.+++...
T Consensus 424 Ll~Lp~LRsi~~~~~E~l~~~kl~g~v~i~~Ll~EMl~a~ 463 (467)
T 3dzy_A 424 LLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAP 463 (467)
T ss_dssp HTHHHHHHHHHHHHHHTTTTTSTTSCCCCCSHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHcCC
Confidence 8876 45668889999999999998865
No 53
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.95 E-value=2e-27 Score=218.82 Aligned_cols=146 Identities=20% Similarity=0.252 Sum_probs=114.1
Q ss_pred HHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcc-cChhhHHHH-HHHHHHH
Q psy1615 9 LAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLH-ASPMAADRV-VAFMDHI 86 (295)
Q Consensus 9 ~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~ 86 (295)
.+...+..+|+|||+||+|.+|+.+||++|||++|+|+++|+.|..... +.. ++.+|.. ......... .++.+.+
T Consensus 230 ~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (419)
T 3dzy_D 230 RSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK--DGV-LISEGQGFMTREFLKSLRKPFGDFM 306 (419)
T ss_dssp HHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGBCS--SEE-EEGGGTEEEEHHHHHSSSGGGSGGG
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcC--CCc-eeecCcccccHHHHHhhhhhHHHHH
Confidence 3445688899999999999999999999999999999999999955432 333 3333332 222111110 1233455
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccchhHHHHHHHHHHHHHH---Hhh--CCCCCCcccccccccc
Q psy1615 87 RVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLLKALHVDSAEYSCLKA---IVL--FTTGKRMFGKPLPLNQ 161 (295)
Q Consensus 87 ~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~~~~~i~~~q~~~l~~---l~~--~~~~~~Rf~~lLl~~~ 161 (295)
+.+.+|+.+|++|++|++||+|||||+||+||++ ||++..+|+.+|++++.+ |+. ||++|.||++||++++
T Consensus 307 ~~i~~f~~~l~~L~ld~~E~alLkAivLf~pD~~----gL~~~~~Ve~lQe~~~~aL~~yi~~~~p~~~~rf~kLLl~Lp 382 (419)
T 3dzy_D 307 EPKFEFAVKFNALELDDSDLAIFIAVIILSGDRP----GLLNVKPIEDIQDNLLQALELQLKLNHPESSQLFAKLLQKMT 382 (419)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTST----TCSCHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Confidence 6788999999999999999999999999999999 899999999999988555 443 8999999999777663
No 54
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=99.95 E-value=2.6e-27 Score=202.41 Aligned_cols=177 Identities=10% Similarity=0.098 Sum_probs=126.2
Q ss_pred cHHHHHHHHHHHHHHHHhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHhhHhhcCCCCcceeecCCcccCh--hh--H-
Q psy1615 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAAAGLHASP--MA--A- 76 (295)
Q Consensus 2 ~~~~~~~~~~~~l~~~v~waK~lp~F~~L~~~Dq~~LLk~~~~e~~~L~~a~~~~~~~~~~~~~~~~~~~~~--~~--~- 76 (295)
+.++++++++..+..+|+|||++|||.+|+.+||++|||++|+|+++|+.|+++.. +...+.+.++..... .. .
T Consensus 42 ~p~~i~~l~~~~l~~iVefAK~iPgF~~L~~~DQi~LLK~~~~ElliLr~a~~~~~-~~~~~~~~~~~~~~~~~~~l~~l 120 (244)
T 3gyt_A 42 NPTDILNVMDITMRRLVKMAKRLGAFNEISEAGKFSLLKGGMIEMLTIRGVTVFNA-DKGVWQTPVDGHSQISFNMFDKL 120 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTEET-TTTEECCTTSTTCCEEGGGGGGS
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCeEeecCCcccchhHHHHHHh
Confidence 45689999999999999999999999999999999999999999999999998654 344455554422110 00 0
Q ss_pred -HHH--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCcccccccch---hHHHHHHHHHHH---HHHHhh--
Q psy1615 77 -DRV--VAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGVLL---KALHVDSAEYSC---LKAIVL-- 145 (295)
Q Consensus 77 -~~~--~~~~~~~~~l~~~~~~l~~L~ld~~E~~lLkai~L~~pd~~~l~~~l~---~~~~i~~~q~~~---l~~l~~-- 145 (295)
... ....+.++.+.+|..+++. ++.||+|||||+|||||++ |++ +...|+.+|+++ |+.|+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~f~~~l~~---~~~E~alLkAivLfspDr~----gL~~~~d~~~Ve~lQe~~~~aL~~y~~~~ 193 (244)
T 3gyt_A 121 RPDIKDTQKKGFLHFFNLLHSDVRK---NDLAIDIIVLMVLFDSKRE----GLVSQQDKETVEKLHRNYESLLHRYLYSI 193 (244)
T ss_dssp CTTTHHHHHHHHHHHHHHSCHHHHT---CHHHHHHHHHHHHSCTTST----TCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHhccCC----CCCccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0111223455566566655 6679999999999999999 888 899999999987 455553
Q ss_pred C-CCCCCcccccccccchhhhhhcCCCccchhhhhhhcCCCCCC
Q psy1615 146 F-TTGKRMFGKPLPLNQHYTATISNVPLSSSLSTAVQRGRVPPN 188 (295)
Q Consensus 146 ~-~~~~~Rf~~lLl~~~y~~r~~~~c~id~l~r~~~q~~r~~~~ 188 (295)
| |++|.||++||+ ++...|.++..+++ ++...+....+||.
T Consensus 194 ~~p~~~~rf~kLL~-~Lp~LR~i~~~~~~-lf~~~~~~~~~~pL 235 (244)
T 3gyt_A 194 HKEEAEQRFASIPK-ALVALRKVAENAVT-LFLGAGNTTEAASL 235 (244)
T ss_dssp CSSSHHHHHHHHHH-HHHHHHHHHHTTTT-TTTTSCCCTTSCTT
T ss_pred CCCCchhHHHHHHH-HHHHHHHHHHHHHH-HHHhccCCccCCcH
Confidence 6 788899999555 45566667666666 33223333344443
No 55
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=99.62 E-value=3.5e-17 Score=152.28 Aligned_cols=129 Identities=19% Similarity=0.257 Sum_probs=84.7
Q ss_pred chhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccccCCCCCchhhHHHhhhcCCCCCCChHHHHHHHHhcC
Q psy1615 161 QHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAE 240 (295)
Q Consensus 161 ~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ae 240 (295)
.|.|+..++|.+++..|..|+.||+ +||++|||.+++++..+.....+.............. ..+..++++....+
T Consensus 173 ~~~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~vq~~r~~~k~r~~~~~~~~~~~~~~-~~~~~ll~a~~~~e 248 (467)
T 3dzy_A 173 TYTCRDNKDCLIDKRQRNRCQYCRY---QKCLAMGMKREAVQEERQRGKDRNENEVESTSSANED-MPVERILEAELAVE 248 (467)
T ss_dssp CCCCSSSSCCCCCSSSSSSCHHHHH---HHHHHTTCCGGGCCCCSCCCCCCSCSSCTTSTTCSCS-SCHHHHHHHHHC--
T ss_pred ceeCCCCCCCCCCcccccccccchh---hhhhhccccchhhhccccccccccccccccccccCCC-Cchhhhhhhhhhhc
Confidence 5789989999999999999999999 9999999999998765544322111100000111222 45677777776666
Q ss_pred CCCCCcCC---CCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 241 PYPTARYS---QCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 241 ~~~~~~~~---~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
+....... ..........+.++|+.++++|+.+|+|||+||+|.+|+.+||++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~l~e~a~~~L~~vVeWAK~iP~F~~L~~~DQi~ 304 (467)
T 3dzy_A 249 PKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 304 (467)
T ss_dssp --------------------CCTTHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHH
T ss_pred ccchhhhhhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHH
Confidence 53321110 011111223467899999999999999999999999999999985
No 56
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=99.61 E-value=1.6e-16 Score=139.12 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCccccccccCCCCCchhhHHHhhhcCCCCCCChHHHHHHHHhcCCCCCC--cCC-CCCCCCCcccHHHHH
Q psy1615 187 PNQSCLPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTA--RYS-QCMQPNNIMGIDNIC 263 (295)
Q Consensus 187 ~~~kC~~~Gm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ae~~~~~--~~~-~~~~~~~~~~~~~~~ 263 (295)
.+-||++|||+||+|+.+|.+.+.+.........+.... .+++.+++++..+||.... ..+ ...+......++++|
T Consensus 11 ~~~kCl~vGMkkeaVq~~R~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (282)
T 1lbd_A 11 SSGLVPRGSHKREAVQEERQRGKDRNENEVESTSSANED-MPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNIC 89 (282)
T ss_dssp ----------------------------------CCTTT-SCHHHHHHHHHTTCCCHHHHHHHTTCCCSSCTTCHHHHHH
T ss_pred CCCCcCccCCcHHhhcCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHhcCCccccccccccccCCCccccHHHHHH
Confidence 347999999999999877755443221111111122223 5689999999999985311 111 112223345789999
Q ss_pred HHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 264 ELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 264 e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
++|+++|+.+|+|||+||||.+|+.+||++
T Consensus 90 ~~a~~~l~~~vewaK~ip~F~~L~~~DQ~~ 119 (282)
T 1lbd_A 90 QAADKQLFTLVEWAKRIPHFSELPLDDQVI 119 (282)
T ss_dssp HHHHHHHHHHHHHHHHSTTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcChhcCCHHHHHH
Confidence 999999999999999999999999999985
No 57
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=99.47 E-value=8.9e-15 Score=134.53 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=34.5
Q ss_pred hcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccccCCC
Q psy1615 167 ISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGD 208 (295)
Q Consensus 167 ~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~~~~ 208 (295)
.++|.+++..|+.|+.||+ +||+++||.+++++..+.+.
T Consensus 91 ~~~C~~~~~~r~~C~~CR~---~kCl~~GM~~~~vq~~R~~~ 129 (419)
T 3dzy_D 91 DLNCRIHKKSRNKCQYCRF---QKCLAVGMSHNAIRFGRMPQ 129 (419)
T ss_dssp CSCCCCCTTGGGTCHHHHH---HHHHHTTCCGGGCCCSCCTT
T ss_pred cCCCCcccccCccchhhhH---HHHhhcccchhheecccccc
Confidence 4789999999999999999 99999999999987666543
No 58
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=99.19 E-value=9e-12 Score=106.72 Aligned_cols=67 Identities=21% Similarity=0.399 Sum_probs=54.3
Q ss_pred CChHHHHHHHHhcCCCCCCcC-CCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~~~~~~-~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
.+.+.++++++.+||++.... +++.++++...++++|+++++.++.+|+|||++|||.+|+.+||++
T Consensus 17 ~~~~~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~ 84 (248)
T 3k6p_A 17 GPVNALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMS 84 (248)
T ss_dssp SCTHHHHHHHHHHSCCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred CCHHHHHHHHHhcCCcccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHH
Confidence 467899999999999765433 5566677778999999999999999999999999999999999984
No 59
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=99.18 E-value=1.5e-11 Score=105.36 Aligned_cols=67 Identities=27% Similarity=0.345 Sum_probs=56.6
Q ss_pred CChHHHHHHHHhcCCCCCC-cCCCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPYPTA-RYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~~~~-~~~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
.+.+.+++.++.|||++.. .+++..+.+....++++|++|+++|+.+|+|||++|||.+|+.+||++
T Consensus 4 ~~~~~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~VewaK~lp~F~~L~~~DQ~~ 71 (248)
T 1xpc_A 4 LTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVH 71 (248)
T ss_dssp SCHHHHHHHHHHTCCCCCCCCSCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHH
T ss_pred CCHHHHHHHHHHcCCCccccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCCccccCCHHHHHH
Confidence 5678899999999997543 334444555667899999999999999999999999999999999985
No 60
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=99.15 E-value=1.3e-11 Score=105.45 Aligned_cols=67 Identities=27% Similarity=0.448 Sum_probs=56.3
Q ss_pred CChHHHHHHHHhcCCCCCCcC-CCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~~~~~~-~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
++++.++++++.+||...... ++..++++...++++|+++++.++.+|+|||++|||.+|+.+||++
T Consensus 17 ~~~~~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~ 84 (244)
T 2e2r_A 17 KPYNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMS 84 (244)
T ss_dssp CCCCHHHHHHHHTCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHH
T ss_pred CCHHHHHHHHHhhCCCcccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHH
Confidence 667899999999999754333 3444445557799999999999999999999999999999999985
No 61
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=99.13 E-value=2.2e-11 Score=104.03 Aligned_cols=67 Identities=22% Similarity=0.351 Sum_probs=57.8
Q ss_pred CChHHHHHHHHhcCCCCCCc-CCCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPYPTAR-YSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~~~~~-~~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
+....++++|++|||..... ++.+.++++...+.++|+++++.|+.+|+|||++|||.+|+.+||++
T Consensus 5 ~~~~~l~~~l~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~ 72 (243)
T 3ltx_A 5 SQTVTILQALNKAALPVLESHHNHGQPPTKVHLLNSLVKLAERELVHLINWAKNVPGYTDLSLSDQVH 72 (243)
T ss_dssp -CHHHHHHHHHTTCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHH
T ss_pred hhhHHHHHHHHHhCCcchhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHH
Confidence 55788999999999976544 35566667778899999999999999999999999999999999985
No 62
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=99.11 E-value=2.1e-11 Score=105.12 Aligned_cols=66 Identities=23% Similarity=0.303 Sum_probs=56.9
Q ss_pred ChHHHHHHHHhcCCCCCCcC-CCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 228 YLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 228 ~~~~l~~~l~~ae~~~~~~~-~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
..+.+++.+..+||...... +.+.+++....+.++|++|+++|+.+|+|||++|||.+|+.+||++
T Consensus 12 ~~~~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~VewaK~iP~F~~L~~~DQ~~ 78 (261)
T 3mnp_A 12 LTPTLVSLLEVIEPEVLYAGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMT 78 (261)
T ss_dssp CCSSHHHHHHHHSCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred ccHHHHHHHHHcCCccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHH
Confidence 35568999999999875443 5666666778899999999999999999999999999999999985
No 63
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=99.11 E-value=2.2e-11 Score=105.60 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=54.8
Q ss_pred CChHHHHHHHHhcCCCCCCc-CCCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPYPTAR-YSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~~~~~-~~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
...+.+++.+..+||+.... .+...+.+....++++|++++++|+.+|+|||++|||.+|+.+||++
T Consensus 18 ~~~~~~~~~l~~~ep~~~~~~~~~~~p~~~~~~~~~l~e~a~~~l~~~VewAK~ip~F~~L~~~DQv~ 85 (269)
T 1t7r_A 18 ECQPIFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMA 85 (269)
T ss_dssp -CCCHHHHHHHHHCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCcccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHH
Confidence 34567899999999975333 34445555567789999999999999999999999999999999985
No 64
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=99.10 E-value=3.7e-11 Score=102.37 Aligned_cols=66 Identities=24% Similarity=0.286 Sum_probs=55.9
Q ss_pred ChHHHHHHHHhcCCCCCCcCCCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 228 YLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 228 ~~~~l~~~l~~ae~~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
..+.+++.++.|||......++..+.++...+.++|++|+++|+.+|+|||++|||.+|+.+||++
T Consensus 4 ~~~~~i~~ll~~e~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~vewaK~lp~F~~L~~~DQ~~ 69 (240)
T 3oll_A 4 SPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVR 69 (240)
T ss_dssp SHHHHHHHHHHHCCCCCCCBCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred CHhHHHHHHHHhCCcccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHH
Confidence 467899999999997553334555556667899999999999999999999999999999999985
No 65
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=99.07 E-value=3e-11 Score=104.13 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=56.4
Q ss_pred hHHHHHHHHhcCCCCCCcC-CCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 229 LSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 229 ~~~l~~~l~~ae~~~~~~~-~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
.+.+++.|+.+||++.... +.+.+++....++++|+++++.|+.+|+|||++|||.+|+.+||++
T Consensus 11 ~~~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~ 76 (260)
T 3vhv_A 11 TPSPVMVLENIEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQIT 76 (260)
T ss_dssp CCCHHHHHHHHCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred CHHHHHHHHHcCCcccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhChHHhcCCHHHHHH
Confidence 4567889999999875543 6666777778899999999999999999999999999999999985
No 66
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=99.07 E-value=4.1e-11 Score=103.40 Aligned_cols=67 Identities=21% Similarity=0.378 Sum_probs=54.2
Q ss_pred CChHHHHHHHHhcCCCCCC-cCCCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPYPTA-RYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~~~~-~~~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
+..+.+++.++.+||+... .++.+.+.+....++++||+|++.++.+|+|||++|||.+|+.+||++
T Consensus 10 ~~~~~~~~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewaK~ip~F~~L~~~DQ~~ 77 (261)
T 1sqn_A 10 QLIPPLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQIT 77 (261)
T ss_dssp CCSCHHHHHHHHHSCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHH
T ss_pred CCCHHHHHHHHhCCCcccccCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhCccHhhCCHHHHHH
Confidence 3467899999999997532 234444455556789999999999999999999999999999999985
No 67
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=99.07 E-value=5.9e-11 Score=102.77 Aligned_cols=65 Identities=25% Similarity=0.300 Sum_probs=54.1
Q ss_pred hHHHHHHHHhcCCCCCCcCCCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 229 LSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 229 ~~~l~~~l~~ae~~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
.+.+++.++.|||+....+++..+.+....++++|++|++.|+.+|+|||++|||.+|+.+||++
T Consensus 3 ~~~~~~~ll~ae~~~~~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewAK~lp~F~~L~~~DQi~ 67 (268)
T 1yye_A 3 PEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVR 67 (268)
T ss_dssp HHHHHHHHHHHCCCCCCCCCCSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred HhHHHHHHHhcCCcccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCcchhcCCHHHHHH
Confidence 35689999999997654445555555556689999999999999999999999999999999985
No 68
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=99.04 E-value=4.7e-11 Score=102.00 Aligned_cols=66 Identities=85% Similarity=1.407 Sum_probs=49.7
Q ss_pred ChHHHHHHHHhcCCCCCCcC-CCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 228 YLSSYISLLLRAEPYPTARY-SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 228 ~~~~l~~~l~~ae~~~~~~~-~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
.++.+++.++.+||++...+ ....++.....++++|+++++.++.+|+|||++|||.+|+.+||++
T Consensus 7 ~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~l~e~a~~~l~~~VewaK~lp~F~~L~~~DQ~~ 73 (244)
T 3cjw_A 7 YLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVA 73 (244)
T ss_dssp HHHHHHHHHHHTCSSCC-------------CCCCCHHHHHHHHHHHHHHHHHHSSSGGGSCHHHHHH
T ss_pred cHHHHHHHHHhcCCCCCcCCCCcccCCCccccHHHHHHHHHHHHHHHHhHHHhCCChhcCCHHHHHH
Confidence 46788999999999775433 2233344556789999999999999999999999999999999985
No 69
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=99.04 E-value=9.9e-11 Score=103.15 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 257 MGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 257 ~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
..++++|+++++.|+.+|+|||+||||.+|+.+||++
T Consensus 71 ~~~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~ 107 (303)
T 1xdk_B 71 GLWDKFSELATKCIIKIVEFAKRLPGFTGLTIADQIT 107 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccccCCHHHHHH
Confidence 4689999999999999999999999999999999985
No 70
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=99.01 E-value=1e-10 Score=102.49 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCCCCc-CCCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 230 SSYISLLLRAEPYPTAR-YSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 230 ~~l~~~l~~ae~~~~~~-~~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
+.+++.|+.+||..... ++.+.+++....++++|+++++.|+.+|+|||++|||.+|+.+||++
T Consensus 46 ~~~~~~l~~~eP~~~~~~~~~~~p~~~~~~~~~l~e~a~~~l~~~VewAK~lP~F~~L~~~DQi~ 110 (294)
T 3vhu_A 46 PSPVMVLENIEPEIVYAGYDSSKPDTAENLLSTLNRLAGKQMIQVVKWAKVLPGFKNLPLEDQIT 110 (294)
T ss_dssp CCHHHHHHHHCCCCCCCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCTTTTSSCHHHHHH
T ss_pred hHHHHHHHhcCCCccccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhhCCHHHHHH
Confidence 45788899999976544 35666677778899999999999999999999999999999999985
No 71
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=99.01 E-value=1.2e-10 Score=100.97 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=51.8
Q ss_pred CChHHHHHHHHhcCCCCCCcCCCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
...+.+++.++.|||......+...+.++...+.++|+++++.|+.+|+|||++|||.+|+.+||++
T Consensus 29 ~~~~~~i~~ll~ae~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~VewAK~lP~F~~L~~~DQi~ 95 (271)
T 1l2j_A 29 LSPEQLVLTLLEAEPPHVLISRPSAPFTEASMMMSLTKLADKELVHMISWAKKIPGFVELSLFDQVR 95 (271)
T ss_dssp TSHHHHHHHHHHHCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred CChhHHHHHHHHcCCccccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHH
Confidence 3456799999999986542223333444445689999999999999999999999999999999985
No 72
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=99.01 E-value=3.8e-11 Score=104.19 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=36.0
Q ss_pred CcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 255 NIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 255 ~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
....+.++|+++++.++.+|+|||+||||.+|+.+||++
T Consensus 72 ~~~~~~~~~~~~~~~l~~~v~waK~ip~F~~L~~~DQ~~ 110 (271)
T 1ovl_A 72 DTQHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDL 110 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCChHHHHH
Confidence 345689999999999999999999999999999999985
No 73
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.00 E-value=2.1e-10 Score=100.73 Aligned_cols=67 Identities=27% Similarity=0.345 Sum_probs=54.8
Q ss_pred CChHHHHHHHHhcCCCCCC-cCCCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPYPTA-RYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~~~~-~~~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
...+.+++.++.+||.... .+++..+.+....+.++|+++++.|+.+|+|||+||||.+|+.+||++
T Consensus 13 ~~~~~~i~~l~~~ep~~~~~~~~~~~~~~~~~~~~~l~e~a~~~L~~~VewAK~lP~F~~L~~~DQi~ 80 (298)
T 2ocf_A 13 LTADQMVSALLDAEPPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVH 80 (298)
T ss_dssp CCHHHHHHHHHHSCCCCBCCCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHH
T ss_pred CCHHHHHHHHHhcCCCcccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCHHHHHH
Confidence 4567899999999997532 234444444456789999999999999999999999999999999985
No 74
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=98.97 E-value=4e-10 Score=97.33 Aligned_cols=67 Identities=15% Similarity=0.288 Sum_probs=53.8
Q ss_pred CChHHHHHHHHhcCCCCC--CcCCCCCCCCCc----ccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPYPT--ARYSQCMQPNNI----MGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~~~--~~~~~~~~~~~~----~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
.+++.+++++..+||.+. ..++...+.... ..++++|+++++.|+.+|+|||++|||.+|+.+||++
T Consensus 6 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~ 78 (264)
T 1g2n_A 6 LSIERLLEMESLVADPSEEFQFLRVGPDSNVPPKFRAPVSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQIL 78 (264)
T ss_dssp CCHHHHHHHHHCCCCCCCCCCSBCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCccccccccCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHcCCChhcCCHHHHHH
Confidence 568899999999999432 222333333333 5789999999999999999999999999999999984
No 75
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=98.92 E-value=2.2e-10 Score=98.51 Aligned_cols=67 Identities=28% Similarity=0.521 Sum_probs=50.6
Q ss_pred CChHHHHHHHHhcCCC------CCCcC-----CCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPY------PTARY-----SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~------~~~~~-----~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
..+++++..++.+||. ..... ......++...++.+|++|+++|+.+|+|||++|||.+|+.+||++
T Consensus 15 ~~~~~~i~~l~~~~p~e~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~VewaK~ip~F~~L~~~DQ~~ 92 (257)
T 3plz_A 15 GSIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMK 92 (257)
T ss_dssp -CCCHHHHHHHHTSCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHH
T ss_pred CCchHHHHHHHhcCCchHHHHHHHhhhhhccccccCCccccchHHHHHHHHHHHHHHHHHHHHcCcChhcCCHHHHHH
Confidence 3477899999999996 11110 1122334567899999999999999999999999999999999985
No 76
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=98.92 E-value=2.2e-10 Score=98.50 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=36.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 254 NNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 254 ~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
.+...+.++|+++++.++.+|+|||+||||.+|+.+|||+
T Consensus 49 ~~~~~~~~~~~l~~~~i~~iV~wAK~iP~F~~L~~~DQi~ 88 (257)
T 3v3e_B 49 EDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDL 88 (257)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHH
Confidence 3446689999999999999999999999999999999985
No 77
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=98.91 E-value=1.3e-09 Score=92.42 Aligned_cols=65 Identities=26% Similarity=0.404 Sum_probs=52.3
Q ss_pred CChHHHHHHHHhcCCCCCCcCCCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~~~~~~~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
.+++.+++++..++|... +...........+.++|+++++.++.+|+|||++|||.+|+.+||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~vewaK~ip~F~~L~~~DQ~~ 73 (235)
T 2nxx_A 9 MPLERIIEAEKRVECNDP--LVALVVNENNTTVNNICQATHKQLFQLVQWAKLVPHFTSLPLTDQVQ 73 (235)
T ss_dssp CCHHHHHHHHHHTCCCCC--CCBCCCSCSSSHHHHHHHHHHHHHHHHHHHHHHSTTSTTSCHHHHHH
T ss_pred CCHHHHHHHHHhcCCCcc--ccccccCccccHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHH
Confidence 568899999999988622 21111133456799999999999999999999999999999999984
No 78
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=98.85 E-value=1.1e-09 Score=98.13 Aligned_cols=66 Identities=27% Similarity=0.488 Sum_probs=40.6
Q ss_pred ChHHHHHHHHhcCCCC------CCc-C----CCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 228 YLSSYISLLLRAEPYP------TAR-Y----SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 228 ~~~~l~~~l~~ae~~~------~~~-~----~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
.++++|+.++.+||.. ... . ......++...+..+|++|+++|+.+|+|||+||||.+|+.+||++
T Consensus 111 ~~p~~i~~l~~~epde~~~~~~i~~~l~~~~~~~~~~~r~~~~~~l~e~a~~~L~~~VewAK~iP~F~~L~~~DQi~ 187 (352)
T 3tx7_B 111 SIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMK 187 (352)
T ss_dssp CSCHHHHHHHTTCCCHHHHHHHHHHHHHTTCC------CCCHHHHHHHHHHHHHHHHHHHTCCC----------CHH
T ss_pred CCCHHHHHHHHhCCcHHHHHHHhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHcChhhhhCCHHHHHH
Confidence 4668999999999971 101 0 1112234567899999999999999999999999999999999985
No 79
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=98.84 E-value=1.2e-09 Score=93.04 Aligned_cols=67 Identities=27% Similarity=0.418 Sum_probs=47.6
Q ss_pred CChHHHHHHHHhcCCCCCC--cCC-CCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPYPTA--RYS-QCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~~~~--~~~-~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
.+++.+++++..+||.... .++ ...+......++++|++++++++.+|+|||++|||.+|+.+||++
T Consensus 8 ~~~~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~vewak~ip~F~~L~~~DQ~~ 77 (240)
T 2p1t_A 8 MPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 77 (240)
T ss_dssp CCHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred CCHHHHHHHHHhcCCccccccccccccCCCCcccHHHHHHHHHHHHHHHHHHHHHhCcChhcCCHHHHHH
Confidence 5688999999999985421 111 122233456789999999999999999999999999999999984
No 80
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=98.76 E-value=2.2e-09 Score=91.70 Aligned_cols=66 Identities=21% Similarity=0.348 Sum_probs=46.4
Q ss_pred ChHHHHHHHHhcCCCCCCc---------CCCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 228 YLSSYISLLLRAEPYPTAR---------YSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 228 ~~~~l~~~l~~ae~~~~~~---------~~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
+++.++..++.++|....- .......+....++++|++|++.++.+|+|||++|||.+|+.+||++
T Consensus 7 ~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~l~~~V~waK~lp~F~~L~~~DQ~~ 81 (246)
T 1ymt_A 7 NVPELILQLLQLEPEEDQVRARIVGCLQEPAKSRSDQPAPFSLLCRMADQTFISIVDWARRCMVFKELEVADQMT 81 (246)
T ss_dssp CCCHHHHHHHHHCCCHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHH
T ss_pred CccHHHHHHhcCCCChHHHHHHHHhhhccccCCCCCccccHHHHHHHHHHHHHHHHHHHHhChhHHhCCHHHHHH
Confidence 4566677777666642100 00001112345799999999999999999999999999999999985
No 81
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=98.69 E-value=3.9e-09 Score=89.55 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 256 IMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 256 ~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
...++++|+++++.++.+|+|||+||||.+|+.+||++
T Consensus 43 ~~~~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~ 80 (236)
T 1fcy_A 43 LGLWDKFSELATKCIIKIVEFAKRLPGFTGLSIADQIT 80 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHH
Confidence 35689999999999999999999999999999999985
No 82
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=98.66 E-value=8.8e-09 Score=87.81 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=46.6
Q ss_pred hHHHHHHHHhcCCCCCC-cC--CCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 229 LSSYISLLLRAEPYPTA-RY--SQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 229 ~~~l~~~l~~ae~~~~~-~~--~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
+..++.+.+...|.... .+ ....+.+....+.++|+++++.++.+|+|||+||||.+|+.+||++
T Consensus 16 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQi~ 83 (244)
T 1pdu_A 16 ITALVRSHVDTTPDPSCLDYSHYEEQSMSEADKVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQEL 83 (244)
T ss_dssp HHHHHHHHHHTSCCGGGCBCTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGSCHHHHHH
T ss_pred HHHHHHhccccCcCccCCCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHH
Confidence 44455555555554211 11 1112334456799999999999999999999999999999999985
No 83
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=98.66 E-value=4.7e-09 Score=91.32 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=50.0
Q ss_pred CChHHHHHHHHhcCCCCCC------c--CCCCCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPYPTA------R--YSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~~~~------~--~~~~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
.+++.+++++..+++.... . .+...++.....++++|+++++.++.+|+|||++|||.+|+.+||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~ 83 (279)
T 1hg4_A 9 FSIERIIEAEQRAETQCGDRALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVI 83 (279)
T ss_dssp CCHHHHHHHHHHHHHHSTTCCCCCBCCCTTCCSCGGGHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred cCHHHHHHHHHhcccccccccccccccCCCcCCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhCCHHHHHH
Confidence 4678888887776653211 1 11222333345789999999999999999999999999999999985
No 84
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=98.65 E-value=2.7e-09 Score=92.22 Aligned_cols=39 Identities=18% Similarity=0.349 Sum_probs=35.4
Q ss_pred CcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 255 NIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 255 ~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
....++++||+|+++|+.+|+|||+||||.+|+.+|||+
T Consensus 45 ~l~~~~~l~e~a~~~L~~~V~wAK~iP~F~~L~~~DQv~ 83 (268)
T 3f5c_B 45 TLKDPQVVCEAASAGLLKTLRFVKYLPCFQILPLDQQLV 83 (268)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHH
Confidence 346789999999999999999999999999999999985
No 85
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=98.63 E-value=9.8e-09 Score=87.78 Aligned_cols=38 Identities=39% Similarity=0.772 Sum_probs=35.4
Q ss_pred cccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 256 IMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 256 ~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
...++++||+|+++|+.+|+|||++|||.+|+.+||++
T Consensus 33 ~~~~~~~~e~a~~~L~~~VewaK~iP~F~~L~~~DQ~~ 70 (249)
T 3p0u_A 33 YLNVHYICESASRLLFLSMHWARSIPAFQALGQDCNTS 70 (249)
T ss_dssp CSCSSCHHHHHHHHHHHHHHHHHTCTTTGGGCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHcCcchhcCCHHHHHH
Confidence 34689999999999999999999999999999999985
No 86
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=98.63 E-value=8.6e-09 Score=88.98 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=48.4
Q ss_pred CChHHHHHHHHhcCCCCCC------cCC-CCCC----CCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 227 SYLSSYISLLLRAEPYPTA------RYS-QCMQ----PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 227 ~~~~~l~~~l~~ae~~~~~------~~~-~~~~----~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
+....+++.+..|+..... .+. ...+ ..+...|.++|+++++.|+.+|+|||+||||.+|+.+||++
T Consensus 27 ~~~~~li~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~VewaK~lP~F~~L~~~DQi~ 104 (266)
T 3kmr_A 27 PEVGELIEKVRKAHQETFPALCQLGKYTTNNSSEQRVSLDIDLWDKFSELSTKCIIKTVEFAKQLPGFTTLTIADQIT 104 (266)
T ss_dssp CHHHHHHHHHHHHHHTTCCCGGGSCCBCCCTTCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCcHHHHhhccCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHcCcChhhCCHHHHHH
Confidence 4466788888877543221 111 1101 11234589999999999999999999999999999999985
No 87
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=98.62 E-value=1.4e-08 Score=86.57 Aligned_cols=39 Identities=33% Similarity=0.669 Sum_probs=36.4
Q ss_pred CcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 255 NIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 255 ~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
+...++++|+++++.++.+|+|||++|||.+|+.+||++
T Consensus 44 ~~~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~ 82 (243)
T 2iz2_A 44 EVDLFELMCKVLDQNLFSQVDWARNTVFFKDLKVDDQMK 82 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCTTTTTSCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhChhHhhCChHHHHH
Confidence 346799999999999999999999999999999999985
No 88
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=98.62 E-value=1.1e-08 Score=86.54 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=45.9
Q ss_pred hHHHHHHHHhcCCCCCCcCCC-----CCCCCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 229 LSSYISLLLRAEPYPTARYSQ-----CMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 229 ~~~l~~~l~~ae~~~~~~~~~-----~~~~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
...+++.+..|+.....+... ....++...+.++|+.+++.++.+|+|||++|||.+|+.+||++
T Consensus 9 ~~~li~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~vewaK~lp~F~~L~~~DQ~~ 78 (232)
T 1osh_A 9 QQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIA 78 (232)
T ss_dssp HHHHHHHHHHHHTSCCCC---------------CHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhCCHHHHHH
Confidence 455778887776643221110 11123446789999999999999999999999999999999985
No 89
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=98.57 E-value=8.8e-09 Score=87.60 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 259 IDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 259 ~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
-+++|++++..++.+|+|||+||||.+|+.+|||+
T Consensus 43 p~~i~~l~~~~l~~iVefAK~iPgF~~L~~~DQi~ 77 (244)
T 3gyt_A 43 PTDILNVMDITMRRLVKMAKRLGAFNEISEAGKFS 77 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCGGGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCcccCCHHHHHH
Confidence 45899999999999999999999999999999985
No 90
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=98.56 E-value=9e-09 Score=87.97 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=36.3
Q ss_pred CcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 255 NIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 255 ~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
....|.++|++++++|+.+|+|||+||||.+|+.+||++
T Consensus 54 ~~~~~~~~~~~~~~~l~~~VewaK~iP~F~~L~~~DQi~ 92 (248)
T 3l0l_A 54 MWEMWERCAHHLTEAIQYVVEFAKRLSGFMELCQNDQIV 92 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHH
Confidence 346799999999999999999999999999999999985
No 91
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=98.52 E-value=2.1e-08 Score=87.74 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=36.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 254 NNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 254 ~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
.+...|.++|+++++.|+.+|+|||+||||.+|+.+||++
T Consensus 56 ~~~~~~~~l~~~~~~~l~~~VewAK~iP~F~~L~~~DQi~ 95 (292)
T 2o4j_A 56 SPLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSDDQIV 95 (292)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhccHHHHHH
Confidence 3456799999999999999999999999999999999985
No 92
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=98.51 E-value=2.9e-08 Score=85.87 Aligned_cols=38 Identities=16% Similarity=0.078 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 256 IMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 256 ~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
...++++|+++++.|+.+|+|||+||||.+|+.+||++
T Consensus 64 ~~~~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQi~ 101 (270)
T 1n83_A 64 EVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIV 101 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCHHHHHH
Confidence 35689999999999999999999999999999999985
No 93
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=98.51 E-value=3.4e-08 Score=86.78 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=36.4
Q ss_pred CcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 255 NIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 255 ~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
....+.++|+++++.|+.+|+|||+||||.+|+.+||++
T Consensus 100 ~~~~~~~l~e~~~~~l~~~VewAK~iP~F~~L~~~DQi~ 138 (302)
T 2hc4_A 100 RLSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTAEDQIA 138 (302)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHH
Confidence 356789999999999999999999999999999999985
No 94
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=98.50 E-value=3.3e-08 Score=85.62 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 257 MGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 257 ~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
..|..+++.++..+..+|+|||+||||.+|+.+||++
T Consensus 76 ~~~~~~~~~~~~~v~~iVewAK~iPgF~~L~~~DQi~ 112 (273)
T 3vi8_A 76 RIFHCCQCTSVETVTELTEFAKAIPGFANLDLNDQVT 112 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSTTTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcCcccCCHHHHHH
Confidence 4689999999999999999999999999999999985
No 95
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=98.49 E-value=1.5e-08 Score=86.27 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 259 IDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 259 ~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
-++++++++++|+.+|+|||+||||.+|+.+|||+
T Consensus 43 p~~l~~l~~~~l~~~VewAK~iP~F~~L~~~DQi~ 77 (243)
T 3up3_A 43 PADIMNIMDVTMRRFVKMAKRLPAFNDLSQDGKFA 77 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHH
Confidence 35899999999999999999999999999999985
No 96
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=98.49 E-value=2.7e-08 Score=85.25 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 256 IMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 256 ~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
...+.++|+++++.|+.+|+|||+||||.+|+.+||++
T Consensus 55 ~~~~~~~~~~~~~~l~~~VewaK~ip~F~~L~~~DQ~~ 92 (254)
T 3b0t_A 55 LSMLPHLADLVSYSIQKVIGFAKMIPGFRDLTSEDQIV 92 (254)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCcccCCHHHHHH
Confidence 34699999999999999999999999999999999985
No 97
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=98.48 E-value=2.3e-08 Score=85.18 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=35.9
Q ss_pred cccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 256 IMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 256 ~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
...|+.+++.+++.++.+|+|||+||||.+|+.+||++
T Consensus 64 ~~~~~~~~~~~~~~l~~~VewAK~lP~F~~L~~~DQ~~ 101 (245)
T 3n00_A 64 QEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVT 101 (245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHH
Confidence 46789999999999999999999999999999999985
No 98
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=98.48 E-value=1.1e-08 Score=87.26 Aligned_cols=38 Identities=8% Similarity=0.406 Sum_probs=35.7
Q ss_pred cccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 256 IMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 256 ~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
...++++|+++++.++.+|+|||+||||.+|+.+||++
T Consensus 53 ~~~~~~~~e~~~~~l~~~VewaK~lp~F~~L~~~DQ~~ 90 (246)
T 1xvp_B 53 LPLVTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQIS 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHH
Confidence 45689999999999999999999999999999999985
No 99
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=98.46 E-value=3.4e-08 Score=85.25 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 257 MGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 257 ~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
..++++|+++++.++.+|+|||+||||.+|+.+||++
T Consensus 68 ~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQi~ 104 (266)
T 2r40_D 68 MPFRQITEMTILTVQLIVEFAKGLPGFAKISQSDQIT 104 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHH
Confidence 4689999999999999999999999999999999985
No 100
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=98.42 E-value=2.4e-08 Score=85.04 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=36.0
Q ss_pred CcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 255 NIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 255 ~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
+...+.++|+++++.|+.+|+|||+||||.+|+.+||++
T Consensus 48 ~~~~~~~~~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~ 86 (244)
T 1nq7_A 48 REALWQQCAIQITHAIQYVVEFAKRITGFMELCQNDQIL 86 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHH
Confidence 345689999999999999999999999999999999985
No 101
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=98.42 E-value=5e-08 Score=84.98 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 256 IMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 256 ~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
...+.++|+++++.++.+|+|||+||||.+|+.+||++
T Consensus 87 ~~~~~~l~e~~~~~l~~~VewaK~lP~F~~L~~~DQ~~ 124 (283)
T 3ipq_A 87 QQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIA 124 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcChhhCCHHHHHH
Confidence 45689999999999999999999999999999999985
No 102
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=98.40 E-value=6.6e-08 Score=85.20 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=36.3
Q ss_pred CcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 255 NIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 255 ~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
....+.++|+++++.|+.+|+|||+||||.+|+.+||++
T Consensus 114 ~~~~~~~l~el~~~~l~~~VewAK~lP~F~~L~~~DQi~ 152 (310)
T 1z5x_E 114 AEERFRHITEITILTVQLIVEFSKRLPGFDKLIREDQIA 152 (310)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCcchhhCCHHHHHH
Confidence 446699999999999999999999999999999999985
No 103
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=98.38 E-value=3.5e-08 Score=87.08 Aligned_cols=38 Identities=13% Similarity=0.374 Sum_probs=35.9
Q ss_pred cccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 256 IMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 256 ~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
...+.++|+++++.|+.+|+|||+||||.+|+.+||++
T Consensus 119 ~~~~~~l~e~~~~~L~~~VewAK~lP~F~~L~~~DQi~ 156 (316)
T 1nrl_A 119 FSLLPHMADMSTYMFKGIISFAKVISYFRDLPIEDQIS 156 (316)
T ss_dssp GTTHHHHHHHHHHHHHHHHHHHHHCHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhhcCHHHHHH
Confidence 45699999999999999999999999999999999985
No 104
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=98.36 E-value=4.5e-08 Score=84.54 Aligned_cols=39 Identities=13% Similarity=0.428 Sum_probs=36.2
Q ss_pred CcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 255 NIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 255 ~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
+...|.++|+++++.|+.+|+|||+||||.+|+.+||++
T Consensus 68 ~~~~~~~~~~~~~~~l~~~VewaK~lP~F~~L~~~DQ~~ 106 (267)
T 3ilz_A 68 DLEAFSEFTKIITPAITRVVDFAKKLPMFSELPXEDQII 106 (267)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcchhhCCHhHHHH
Confidence 345799999999999999999999999999999999985
No 105
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=98.35 E-value=9e-08 Score=81.71 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 257 MGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 257 ~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
..+.++|+++++.++.+|+|||+||||.+|+.+||++
T Consensus 52 ~~~~~l~~~~~~~l~~~VewaK~lp~F~~L~~~DQ~~ 88 (248)
T 2nxx_E 52 VRFRHITEITILTVQLIVEFAKRLPGFDKLLREDQIA 88 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchhhCCHHHHHH
Confidence 5689999999999999999999999999999999985
No 106
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=98.35 E-value=6e-08 Score=82.08 Aligned_cols=41 Identities=34% Similarity=0.600 Sum_probs=37.5
Q ss_pred CCCcccHHHHHHHHHHHHHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 253 PNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 253 ~~~~~~~~~~~e~a~~~l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
..+..+++++|+.+++.++.+|+|||++|+|.+|+.+||++
T Consensus 37 ~~~~~~~~~~~~~~~~~l~~~v~wak~~p~F~~L~~~DQ~~ 77 (237)
T 1pzl_A 37 AKKIASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVA 77 (237)
T ss_dssp TSCBCCHHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHhCcCcccCCHHHHHH
Confidence 34567899999999999999999999999999999999974
No 107
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=98.17 E-value=3.7e-07 Score=78.84 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=30.7
Q ss_pred HHHHHHHHHHH-HHHHHhHhhhCCCCCCCCCCcccc
Q psy1615 259 IDNICELAARL-LFSAVEWARNIPFFPDLQHRSGVR 293 (295)
Q Consensus 259 ~~~~~e~a~~~-l~~~V~WAK~iP~F~~L~~~DQv~ 293 (295)
.-.+|+.++++ ++.+|+|||+||||.+|+.+||++
T Consensus 74 ~~~~c~~~~~~~v~~~VewAK~iP~F~~L~~~DQi~ 109 (269)
T 3u9q_A 74 IFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVT 109 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChhhcCHHHHHH
Confidence 34678888887 668999999999999999999985
No 108
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=97.96 E-value=2e-07 Score=67.33 Aligned_cols=46 Identities=13% Similarity=0.082 Sum_probs=37.2
Q ss_pred cchhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccccCCC
Q psy1615 160 NQHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGD 208 (295)
Q Consensus 160 ~~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~~~~ 208 (295)
+.|.|+..++|.|++..+..|+.||+ +||++|||.++.++..+.+.
T Consensus 38 ~~y~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~vq~~R~~~ 83 (99)
T 1ynw_B 38 LTYTCRDNKDCLIDKRQRNRCQYCRY---QKCLAMGMKREAVQEERQRG 83 (99)
T ss_dssp CCCCCSSSSCCCCCSTTSSSCHHHHH---HHHHHTTCCSTTCC------
T ss_pred cccccCCCCcccccccCCccCccccH---HHHhHcCCCHHHhhhccccc
Confidence 36889889999999999999999999 99999999999987655443
No 109
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=97.89 E-value=3e-07 Score=63.49 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=37.9
Q ss_pred cchhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCcccccccc
Q psy1615 160 NQHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALT 205 (295)
Q Consensus 160 ~~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~ 205 (295)
..|.|+..++|.|++..+..|+.||+ +||++|||.+++++.++
T Consensus 35 ~~y~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~vq~~R 77 (78)
T 3cbb_A 35 HMYSCRFSRQCVVDKDKRNQCRYCRL---KKCFRAGMKKEAVQNER 77 (78)
T ss_dssp CCCCCSSCSCCCCSTTTTTTCHHHHH---HHHHHHTCCGGGCCCC-
T ss_pred cCcccccccccCcCccccccChhhhh---HHHhHcCCCHHHccccC
Confidence 35788889999999999999999999 99999999999886543
No 110
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=97.88 E-value=5.1e-07 Score=63.35 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=38.3
Q ss_pred chhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCcccccccc
Q psy1615 161 QHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALT 205 (295)
Q Consensus 161 ~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~ 205 (295)
.|.|+..++|.|++..+..|+.||+ +||++|||.+++++..+
T Consensus 41 ~y~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~vq~~R 82 (85)
T 1dsz_B 41 TYTCRDNKDCLIDKRQRNRCQYCRY---QKCLAMGMKREAVQEER 82 (85)
T ss_dssp CCCCSSCSCCCCCTTTTTTCHHHHH---HHHHHTTCCGGGSCCCC
T ss_pred ceeecccccccccccccccCcchhH---HHHhHcCCCHHHhhccc
Confidence 5789889999999999999999999 99999999999986554
No 111
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=97.87 E-value=5.5e-07 Score=63.39 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=38.0
Q ss_pred chhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccccCC
Q psy1615 161 QHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNG 207 (295)
Q Consensus 161 ~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~~~ 207 (295)
.|.|+..++|.|+...+..|+.||+ +||++|||.+++++..+..
T Consensus 40 ~y~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~vq~~R~~ 83 (86)
T 1dsz_A 40 VYTCHRDKNCIINKVTRNRCQYCRL---QKCFEVGMSKESVRNDRNK 83 (86)
T ss_dssp CCCCSSCSCCCCSTTTGGGCHHHHH---HHHHHTTCCGGGSCCC---
T ss_pred ceeeccCCccccCccccccchhhhH---HHHHHhCCCHHHhhhcccc
Confidence 5789889999999999999999999 9999999999998765543
No 112
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=97.80 E-value=6.7e-07 Score=63.87 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=38.5
Q ss_pred chhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccccC
Q psy1615 161 QHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTN 206 (295)
Q Consensus 161 ~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~~ 206 (295)
.|.|+..++|.|++..+..|+.||+ +||++|||.+++++..++
T Consensus 46 ~y~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~vq~~R~ 88 (93)
T 2han_A 46 TYACRENRNCIIDKRQRNRCQYCRY---QKCLTCGMKREAVQEERQ 88 (93)
T ss_dssp CCCCSSCSCCCCSTTTGGGCHHHHH---HHHHHHTCCGGGSCCCC-
T ss_pred CcCcCCCCcCCcCCCCCccCccccH---HHHhHhCCCHHHhhhccC
Confidence 5789889999999999999999999 999999999999865554
No 113
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=97.80 E-value=8.6e-07 Score=62.76 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=38.2
Q ss_pred chhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCcccccccc
Q psy1615 161 QHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALT 205 (295)
Q Consensus 161 ~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~ 205 (295)
.|.|+..++|.|++..+..|+.||+ +||++|||.++.++.++
T Consensus 36 ~y~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~vq~~~ 77 (89)
T 1cit_A 36 KYICLANKDCPVDKRRRNRCQFCRF---QKCLAVGMVKEVVRTDS 77 (89)
T ss_dssp CCCCSSSSCCCCSTTTTTTCHHHHH---HHHHHTTCCGGGSCCGG
T ss_pred eeeeccCCccccCCCCcccChhhhh---HHHhHcCCCHHHeeccc
Confidence 5789889999999999999999999 99999999999987544
No 114
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=97.80 E-value=2.1e-06 Score=60.19 Aligned_cols=41 Identities=15% Similarity=-0.199 Sum_probs=36.8
Q ss_pred cccchhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCcccc
Q psy1615 158 PLNQHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQF 201 (295)
Q Consensus 158 l~~~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~ 201 (295)
..+.|.|+..++|.|++..|+.||.||+ +|||+|||.....
T Consensus 35 ~~~~y~C~~~~~C~i~~~~R~~C~~CR~---qKCl~VgM~~~~~ 75 (87)
T 2lze_A 35 MDLTYTDRDYKNCESYHKCSDLCQYCRY---QKDLAIHHQHHHG 75 (87)
T ss_dssp TSCTTTSCCCCCCCCSSCCSSSCSGGGT---SCCHHHHCSSCCC
T ss_pred CCCeeEcCCCCccccCCCccCcCCcccC---hhhccCcCEeccC
Confidence 3456899999999999999999999999 9999999987653
No 115
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=97.79 E-value=4.5e-07 Score=63.52 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=33.3
Q ss_pred chhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccccC
Q psy1615 161 QHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTN 206 (295)
Q Consensus 161 ~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~~ 206 (295)
.|.|+..++|.|++..+..|+.||+ +||++|||.+++++.++.
T Consensus 40 ~y~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~vq~~R~ 82 (84)
T 1hcq_A 40 DYMCPATNQCTIDKNRRKSCQACRL---RKCYEVGMMKGGIRKDRR 82 (84)
T ss_dssp CCCCSSSSCCCCSTTTTTTCHHHHH---HHHHHHTCCC--------
T ss_pred ccccccCccCCcCCcCcccChhhhh---HHHhHcCCCHHHhcccCC
Confidence 5789889999999999999999999 999999999999865553
No 116
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=97.79 E-value=4e-07 Score=64.46 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=39.7
Q ss_pred cchhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccccCC
Q psy1615 160 NQHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNG 207 (295)
Q Consensus 160 ~~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~~~ 207 (295)
+.|.|+..++|.|+...|..|+.||+ +||++|||.++.++..+.+
T Consensus 42 ~~y~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~vq~~R~~ 86 (89)
T 2ebl_A 42 LTYTCRANRNCPIDQHHRNQCQYCRL---KKCLKVGMRREAVQRGSGP 86 (89)
T ss_dssp CCCCCSSCSCCCCCSSSSSCCSHHHH---HHHHHHTCCHHHHSCSCCC
T ss_pred cceecccCccCCcCccCccccccchH---HHhhhccCCHHHcccCCCC
Confidence 35789889999999999999999999 9999999999998665543
No 117
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=97.79 E-value=1.2e-06 Score=62.64 Aligned_cols=45 Identities=16% Similarity=0.105 Sum_probs=37.9
Q ss_pred ch-hhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccccCCC
Q psy1615 161 QH-YTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNGD 208 (295)
Q Consensus 161 ~y-~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~~~~ 208 (295)
.| .|+..++|.|+...+..|+.||+ +||++|||.+++++..+.+.
T Consensus 43 ~y~~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~vq~~R~~~ 88 (94)
T 1a6y_A 43 QYKRCLKNENCSIVRINRNRCQQCRF---KKCLSVGMSRDAVRFGRIPK 88 (94)
T ss_dssp CCCCCSSTTCCCCCTTTTTSCHHHHH---HHHTTTTCCSTTCCCCC---
T ss_pred ceEEccCCCCCccCccccccccchhH---HHhhHccCCHHHhccCcCcC
Confidence 46 48889999999999999999999 99999999999987655443
No 118
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=97.73 E-value=1.2e-06 Score=63.08 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=38.8
Q ss_pred chhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccccC
Q psy1615 161 QHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTN 206 (295)
Q Consensus 161 ~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~~ 206 (295)
.|.|+..++|.|++..+..|+.||+ +||++|||.+++++..+.
T Consensus 40 ~y~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~vq~~R~ 82 (98)
T 1lo1_A 40 EYSCPATNECEITKRRRKSCQACRF---MKALKVGMLKEGVRLDRV 82 (98)
T ss_dssp CCCCSSCSCCCCCHHHHHHCHHHHH---HHHHHHTCCGGGSCSSCC
T ss_pred ccccCccccccccccccccccchhH---HHHhHcCCCHHHeecccc
Confidence 5789889999999999999999999 999999999999875543
No 119
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=97.69 E-value=9.1e-07 Score=65.75 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=35.0
Q ss_pred chhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccccC
Q psy1615 161 QHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTN 206 (295)
Q Consensus 161 ~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~~ 206 (295)
.|.|+..++|.|+...|..|+.||+ +||+++||.+++++..+.
T Consensus 65 ~y~C~~~~~C~i~~~~r~~Cr~CRl---~KCl~vGM~~~avq~kR~ 107 (117)
T 4hn5_A 65 NYLCAGRNDCIIDKIRRKNCPACRY---RKCLQAGMNLEARKTKKK 107 (117)
T ss_dssp CCCCSSSSCCCCSTTTTTTCHHHHH---HHHHHHTCCTTC------
T ss_pred ceecCCCCccccCcccccCCcccch---HHHhHcCCCHHHhccccc
Confidence 5778888999999999999999999 999999999999865543
No 120
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=97.66 E-value=2.6e-06 Score=62.91 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=39.9
Q ss_pred cchhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccccCC
Q psy1615 160 NQHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNG 207 (295)
Q Consensus 160 ~~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~~~ 207 (295)
..|.|+..++|.|+...+..|+.||+ +||++|||.++.++..+..
T Consensus 44 ~~y~C~~~~~C~i~~~~R~~Cr~CR~---~KCl~vGM~~~~vq~~R~~ 88 (113)
T 2a66_A 44 KRYTCIENQNCQIDKTQRKRCPYCRF---QKCLSVGMKLEAVRADRMR 88 (113)
T ss_dssp CCCCCSSCSCCCCCTTTTTTCHHHHH---HHHHHTTCCGGGSCTTCCC
T ss_pred ccccccccccCCcCCCccccccchhH---HHHhHhCCCHHHhcccccc
Confidence 35889889999999999999999999 9999999999998765543
No 121
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=97.64 E-value=1.1e-06 Score=64.05 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=35.4
Q ss_pred cchhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCcccccccc
Q psy1615 160 NQHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALT 205 (295)
Q Consensus 160 ~~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~ 205 (295)
..|.|+..++|.|++..|..|+.||+ +||++|||.+++++..+
T Consensus 42 ~~y~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~~k~~k 84 (105)
T 1r4i_A 42 QKYLCASRNDCTIDKFRRKNCPSCRL---RKCYEAGMTLGARKLKK 84 (105)
T ss_dssp CCCCCSSSSCCCCCTTTTTTCHHHHH---HHHHHHTCCSCC-----
T ss_pred CceeeccCCccccCccccccchhchH---HHHHhhhcccchhhhcc
Confidence 35789889999999999999999999 99999999998865433
No 122
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=97.64 E-value=1e-06 Score=62.70 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=38.1
Q ss_pred chhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccccCC
Q psy1615 161 QHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAALTNG 207 (295)
Q Consensus 161 ~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~~~~ 207 (295)
.|.|+..++|.++...+..|+.||+ +||+++||.+++++..+..
T Consensus 38 ~~~C~~~~~C~i~~~~r~~C~~CR~---~KCl~~GM~~~avq~~r~~ 81 (90)
T 3g9m_A 38 NYLCAGRNDCIIDKIRRKNCPACRY---RKCLQAGMNLEARKTKKKI 81 (90)
T ss_dssp CCCCSSSSCCCCCTTGGGTCHHHHH---HHHHHHTCCTTHHHHHC--
T ss_pred ceeCCCCCccccCcccccCCcchhh---HHHHHcCCCHHHhcccccc
Confidence 5778888999999999999999999 9999999999998765543
No 123
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=97.53 E-value=2.7e-06 Score=62.63 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=36.6
Q ss_pred cchhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccc
Q psy1615 160 NQHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFA 202 (295)
Q Consensus 160 ~~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~ 202 (295)
..|.|+..++|.|++..+..|+.||+ +||++|||.+++++
T Consensus 41 ~~y~C~~~~~C~i~~~~r~~Cr~CR~---~KCl~vGM~~~~v~ 80 (110)
T 1kb2_A 41 ALFTCPFNGDCRITKDNRRHCQACRL---KRCVDIGMMKEFIL 80 (110)
T ss_dssp CCCCCSSCSCCCCCTTTTTTCHHHHH---HHHHHTTCCGGGSC
T ss_pred cceeeCCCCCccCCcccceecccccH---hhhhhcCCcHHhcc
Confidence 36789889999999999999999999 99999999999765
No 124
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=97.52 E-value=4.1e-06 Score=62.58 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=37.7
Q ss_pred cchhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccc
Q psy1615 160 NQHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAAL 204 (295)
Q Consensus 160 ~~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~ 204 (295)
..|.|+..++|.|+...+..|+.||+ +||++|||.++.++.+
T Consensus 43 ~~y~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~v~~~ 84 (119)
T 2han_B 43 AVYCCKFGRACEMDMYMRRKCQECRL---KKCLAVGMRPECVVPE 84 (119)
T ss_dssp CCCCCSSCSCCCCSTTGGGTCHHHHH---HHHHHTTCCGGGSSCS
T ss_pred cccccccccccccCccccccchhhHH---HHHHHhCCCHHHccch
Confidence 35889889999999999999999999 9999999999987643
No 125
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=97.49 E-value=3e-06 Score=61.65 Aligned_cols=41 Identities=10% Similarity=0.081 Sum_probs=37.3
Q ss_pred chhhhhhcCCCccchhhhhhhcCCCCCCCCCCCCCCCccccccc
Q psy1615 161 QHYTATISNVPLSSSLSTAVQRGRVPPNQSCLPGGLGPGQFAAL 204 (295)
Q Consensus 161 ~y~~r~~~~c~id~l~r~~~q~~r~~~~~kC~~~Gm~~~~~~~~ 204 (295)
.|.|+..++|.|+...+..|+.||+ +||++|||.++.++..
T Consensus 39 ~y~C~~~~~C~i~~~~r~~C~~CR~---~KCl~vGM~~~~v~~~ 79 (103)
T 2nll_B 39 SYSCKYEGKCVIDKVTRNQCQECRF---KKCIYVGMATDLVLDD 79 (103)
T ss_dssp GCCCSSCTTCCCSTTTTTSCHHHHH---HHHHHTTCCGGGSCCH
T ss_pred hhhhhccCCcCcCccCccccchhhh---HhhhHhCCCHHHhhhh
Confidence 5889889999999999999999999 9999999999988543
No 126
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=26.51 E-value=30 Score=24.94 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=18.9
Q ss_pred hHhhcCCCCCCCCHHHHHHHHHH
Q psy1615 19 EWARNIPFFPDLQVTDQVALLRL 41 (295)
Q Consensus 19 ~waK~lp~F~~L~~~Dq~~LLk~ 41 (295)
+-...|++|..|..+||..+.+.
T Consensus 67 ~~~~~I~G~~~L~~eDQ~~I~~~ 89 (114)
T 1v9x_A 67 KSVDDVEGIESLRWEDQQKIRKY 89 (114)
T ss_dssp SCGGGEETTTTSCHHHHHHHHHH
T ss_pred CChHHCCChHHCCHHHHHHHHHH
Confidence 34567999999999999988664
No 127
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=25.91 E-value=37 Score=24.58 Aligned_cols=21 Identities=5% Similarity=0.143 Sum_probs=17.8
Q ss_pred hhcCCCCCCCCHHHHHHHHHH
Q psy1615 21 ARNIPFFPDLQVTDQVALLRL 41 (295)
Q Consensus 21 aK~lp~F~~L~~~Dq~~LLk~ 41 (295)
...|+||..|+.+||..+.+.
T Consensus 73 ~~~i~G~~~L~~eDQ~~I~~~ 93 (117)
T 1uw0_A 73 LTELEGWEELEDNEKEQITQH 93 (117)
T ss_dssp TSSSBSTTTSCHHHHHHHHHH
T ss_pred hHHCcChHHCCHHHHHHHHHH
Confidence 456899999999999888765
No 128
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=24.13 E-value=24 Score=25.35 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=18.0
Q ss_pred hhcCCCCCCCCHHHHHHHHHH
Q psy1615 21 ARNIPFFPDLQVTDQVALLRL 41 (295)
Q Consensus 21 aK~lp~F~~L~~~Dq~~LLk~ 41 (295)
+..|+||..|+.+||..+.+.
T Consensus 75 ~~~I~Gf~~L~~eDQe~Ikk~ 95 (111)
T 3odc_A 75 ASQLKGFSLLATEDKEALKKQ 95 (111)
T ss_dssp GGGEETGGGSCHHHHHHHHHH
T ss_pred HHhCCChHHCCHHHHHHHHHH
Confidence 456999999999999988764
No 129
>1av3_A Kappa-PVIIA; kappa-conotoxin, potassium channel blocker, cystine knot; HET: HYP; NMR {Conus purpurascens} SCOP: g.3.6.1 PDB: 1kcp_A*
Probab=23.28 E-value=25 Score=17.56 Aligned_cols=8 Identities=50% Similarity=1.086 Sum_probs=6.1
Q ss_pred CCCCCCCC
Q psy1615 187 PNQSCLPG 194 (295)
Q Consensus 187 ~~~kC~~~ 194 (295)
|++||++.
T Consensus 4 pnqkcfqh 11 (27)
T 1av3_A 4 PNQKCFQH 11 (27)
T ss_dssp TTSBCCGG
T ss_pred CcHHHHHH
Confidence 67899874
No 130
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=21.24 E-value=39 Score=23.95 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.5
Q ss_pred hcCCCCCCCCHHHHHHHHHH
Q psy1615 22 RNIPFFPDLQVTDQVALLRL 41 (295)
Q Consensus 22 K~lp~F~~L~~~Dq~~LLk~ 41 (295)
..|++|..|+.+||..+.+.
T Consensus 76 ~~i~G~~~L~~eDq~~i~~~ 95 (106)
T 2dmj_A 76 VEVDGFSELRWDDQQKVKKT 95 (106)
T ss_dssp TSEETTTTSCHHHHHHHHHH
T ss_pred hhCCChHHCCHHHHHHHHHH
Confidence 45899999999999887553
No 131
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=20.16 E-value=29 Score=25.19 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.9
Q ss_pred hhcCCCCCCCCHHHHHHHHHH
Q psy1615 21 ARNIPFFPDLQVTDQVALLRL 41 (295)
Q Consensus 21 aK~lp~F~~L~~~Dq~~LLk~ 41 (295)
...|++|..|..+||..+.+.
T Consensus 88 ~~~I~Gfd~L~~eDQekIkk~ 108 (116)
T 3od8_A 88 DVEVDGFSELRWDDQQKVKKT 108 (116)
T ss_dssp HHHEETGGGSCHHHHHHHHHH
T ss_pred hhhCcChHHCCHHHHHHHHHH
Confidence 356999999999999988774
Done!