RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1615
(295 letters)
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 108 bits (271), Expect = 5e-29
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
I ++CE L VEWA+ IP F +L + DQVALLR E +L A++ SM
Sbjct: 37 ASIADVCESMKEQLLVLVEWAKYIPAFCELPLDDQVALLRAHAGEHLLLGATKRSMVFKD 96
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
LL + IR+ E V + L +D EY+ LKAI+ F
Sbjct: 97 VLLL-GNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDP 152
Score = 61.2 bits (148), Expect = 1e-11
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 233 ISLLLRAEPY------PTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
I+ LL+AE P + + ++ I I ++CE L VEWA+ IP F +L
Sbjct: 7 INALLQAEVLSRQITSPVSGINGDIRAKKIASIADVCESMKEQLLVLVEWAKYIPAFCEL 66
Query: 287 QH 288
Sbjct: 67 PL 68
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 107 bits (267), Expect = 3e-28
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPL-HVAPLL 64
+C++A + LFS VEWAR+ FF +L+V DQ+ LL+ WSEL +L+ + +
Sbjct: 47 LCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVAHGKEGTIF 106
Query: 65 AAAGLHA--SPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
G H S + + VAF + + + QE V +L++L D E+ CLK +VLF
Sbjct: 107 LVTGEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFDQREFVCLKFLVLF 159
Score = 48.5 bits (115), Expect = 2e-07
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 233 ISLLLRAEP-----------YPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIP 281
I LL+ EP Y S + + +C++A + LFS VEWAR+
Sbjct: 7 ILELLKCEPDEPQVQAKIMAYLQQEQSNRNRQEKLSAFGLLCKMADQTLFSIVEWARSSI 66
Query: 282 FFPDLQ 287
FF +L+
Sbjct: 67 FFRELK 72
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 105 bits (263), Expect = 9e-28
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ ++ +LA + L + WA+ IP F +L + DQV LL W E+ ++ S+ H
Sbjct: 34 MMSLTKLADKELVHMIGWAKKIPGFVELSLLDQVRLLESCWMEVLMVGLMWRSID-HPGK 92
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
L+ A L V ++ + + + L + EY C+KA++L +
Sbjct: 93 LIFAPDLVLDRDEGKCVEGILEIFDMLLATTSRFRELKLQHKEYLCVKAMILLNSSMY 150
Score = 54.7 bits (131), Expect = 2e-09
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 233 ISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQH 288
+ LL AEP M + ++ +LA + L + WA+ IP F +L
Sbjct: 8 VLTLLEAEPPNVLVSRPSMPFTEASMMMSLTKLADKELVHMIGWAKKIPGFVELSL 63
>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
virescens [TaxId: 7102]}
Length = 256
Score = 103 bits (257), Expect = 8e-27
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ ++C++ + + + V WAR+IP F L++ DQ+ L++ W+EL + + SM
Sbjct: 44 VSSLCQIGNKQIAALVVWARDIPHFSQLEMEDQILLIKGSWNELLLFAIAWRSMEFLTEE 103
Query: 63 LLAAAGLHASPMAADRVVAFMD-----------------HIRVFQEQVEKLKALHVDSAE 105
G + +++ M RV E K++ L VD AE
Sbjct: 104 RDGVDGTGNRTTSPPQLMCLMPGMTLHRNSALQAGVGQIFDRVLSELSLKMRTLRVDQAE 163
Query: 106 YSCLKAIVLFT 116
Y LKAI+L
Sbjct: 164 YVALKAIILLN 174
Score = 48.6 bits (115), Expect = 2e-07
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 251 MQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
+ P + ++C++ + + + V WAR+IP F L
Sbjct: 36 VPPKFRAPVSSLCQIGNKQIAALVVWARDIPHFSQL 71
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 103 bits (257), Expect = 9e-27
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 26/140 (18%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMP----- 57
+ +C++ + LF VE+AR +P F + + DQV LL+ W EL + N + CS+
Sbjct: 41 VSALCQVVNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIANVAWCSIVSLDDG 100
Query: 58 ---------------------LHVAPLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKL 96
L L +A + R+ E K+
Sbjct: 101 GAGGGGGGLGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKM 160
Query: 97 KALHVDSAEYSCLKAIVLFT 116
K L++D E SCLKAI+L+
Sbjct: 161 KRLNLDRRELSCLKAIILYN 180
Score = 49.8 bits (118), Expect = 1e-07
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 238 RAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
RA + +QP+ + +C++ + LF VE+AR +P F +
Sbjct: 20 RALTFLRVGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARMMPHFAQV 68
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 102 bits (256), Expect = 9e-27
Identities = 30/118 (25%), Positives = 49/118 (41%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ + L R + +AV+WA+ IP F +L + DQ+ LL+ W L S A
Sbjct: 31 MTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMSLMAFALGWRSYRQSSAN 90
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
LL A + D + +L L V EY C+K ++L ++ +
Sbjct: 91 LLCFAPDLIINEQRMTLPDMYDQCKHMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPK 148
Score = 52.4 bits (125), Expect = 1e-08
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 231 SYISLLLRAEP-YPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQH 288
+ +SLL EP A Y + + + + L R + +AV+WA+ IP F +L
Sbjct: 2 TLVSLLEVIEPEVLYAGYDSSVPDSTWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHL 60
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 102 bits (256), Expect = 9e-27
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 1/129 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ + LA R L + WA+ +P F DL + DQV LL W E+ ++ SM H
Sbjct: 37 MGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAWLEILMIGLVWRSME-HPGK 95
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIF 122
LL A L V ++ + + + +++ E+ CLK+I+L +G F
Sbjct: 96 LLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTF 155
Query: 123 TGVLLKALH 131
LK+L
Sbjct: 156 LSSTLKSLE 164
Score = 47.8 bits (113), Expect = 4e-07
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 233 ISLLLRAEP---YPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQH 288
+S LL AEP Y ++ ++M + LA R L + WA+ +P F DL
Sbjct: 10 VSALLDAEPPILYSEYDPTRPFSEASMM--GLLTNLADRELVHMINWAKRVPGFVDLTL 66
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 102 bits (255), Expect = 1e-26
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +C+L R + + WA++IP F L ++DQ+++L+ VW E+ VL +Q S+PL
Sbjct: 32 VATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDEL 91
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
A R + + V +L+AL ++ EY LKA+ L
Sbjct: 92 AF--AEDLVLDEEGARAAGLGELGAALLQLVRRLQALRLEREEYVLLKALALAN 143
Score = 57.4 bits (138), Expect = 2e-10
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 229 LSSYISLLLRAEPYPTARYSQCMQPN-NIMGIDNICELAARLLFSAVEWARNIPFFPDLQ 287
+++ +S LL EP P+ ++ + +C+L R + + WA++IP F L
Sbjct: 1 VNALVSHLLVVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLS 60
Query: 288 H 288
Sbjct: 61 L 61
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 100 bits (251), Expect = 3e-26
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +C+LA R L + WA++IP F L + DQ++LL+ W E+ +L S+
Sbjct: 32 LTTLCDLADRELVVIIGWAKHIPGFSTLSLADQMSLLQSAWMEILILGVVYRSLSFEDEL 91
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+ A + ++ +D + V+K K++ ++ E+ LKAI L
Sbjct: 92 VY--ADDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALA 142
Score = 54.3 bits (130), Expect = 2e-09
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 233 ISLLLRAEPYPT-ARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQH 288
+S LL AEP A + ++I + +C+LA R L + WA++IP F L
Sbjct: 5 VSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVIIGWAKHIPGFSTLSL 61
>d1t7ra_ a.123.1.1 (A:) Androgen receptor {Chimpanzee (Pan
troglodytes) [TaxId: 9598]}
Length = 250
Score = 101 bits (252), Expect = 4e-26
Identities = 27/115 (23%), Positives = 49/115 (42%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ ++ EL R L V+WA+ +P F +L V DQ+A+++ W L V S +
Sbjct: 33 LSSLNELGERQLVHVVKWAKALPGFRNLHVDDQMAVIQYSWMGLMVFAMGWRSFTNVNSR 92
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
+L A + ++ L + E+ C+KA++LF+
Sbjct: 93 MLYFAPDLVFNEYRMHKSRMYSQCVRMRHLSQEFGWLQITPQEFLCMKALLLFSI 147
Score = 49.3 bits (117), Expect = 1e-07
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 231 SYISLLLRAEP-YPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQH 288
++++L EP A + + + ++ EL R L V+WA+ +P F +L
Sbjct: 4 IFLNVLEAIEPGVVCAGHDNNQPDSFAALLSSLNELGERQLVHVVKWAKALPGFRNLHV 62
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 100 bits (251), Expect = 5e-26
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Query: 4 DNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPL 63
D ELA + + VE+A+ +P F L + DQ+ LL+ ++ +L P
Sbjct: 47 DKFSELATKCIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMT 106
Query: 64 LA-AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
+ L+ + M D + F +L L +D E L AI L
Sbjct: 107 FSDGLTLNRTQMHNAGFGPLTDLVFAF---AGQLLPLEMDDTETGLLSAICLIC 157
Score = 42.3 bits (99), Expect = 2e-05
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 232 YISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
L + Y T + ++ D ELA + + VE+A+ +P F L
Sbjct: 19 TFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGFTGL 73
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 99.8 bits (248), Expect = 1e-25
Identities = 46/115 (40%), Positives = 64/115 (55%), Gaps = 1/115 (0%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ NIC+ A + LF+ VEWA+ IP F +L + DQV LLR W+EL + + S S+ +
Sbjct: 37 VTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGI 96
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
LL A GLH +A RV E V K++ + +D E CL+AIVLF
Sbjct: 97 LL-ATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNP 150
Score = 48.9 bits (116), Expect = 1e-07
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 233 ISLLLRAEPYPTARYSQCMQPNNI---MGIDNICELAARLLFSAVEWARNIPFFPDL 286
+ L EP M N + NIC+ A + LF+ VEWA+ IP F +L
Sbjct: 8 LEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSEL 64
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 100 bits (249), Expect = 1e-25
Identities = 26/116 (22%), Positives = 49/116 (42%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +L R L S V+W++++P F +L + DQ+ L++ W L V S +L
Sbjct: 36 SLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQML 95
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
A + +F + ++ L V E+ C+K ++L T
Sbjct: 96 YFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPL 151
Score = 52.4 bits (125), Expect = 1e-08
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 233 ISLLLRAEP-YPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQH 288
I+LL+ EP A + + + ++ +L R L S V+W++++P F +L
Sbjct: 7 INLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHI 63
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 96.6 bits (240), Expect = 2e-24
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Query: 1 MGIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHV 60
I +L + WA IP F DL DQ L + ELFVL + S P+
Sbjct: 39 QHIQQFYDLLTGSMEIIRGWAEKIPGFADLPKADQDLLFESAFLELFVLRLAYRSNPVE- 97
Query: 61 APLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKR 120
L+ G+ + V F + I E L+ +++D + +SC+ A+ + T
Sbjct: 98 GKLIFCNGVVLHRL--QCVRGFGEWIDSIVEFSSNLQNMNIDISAFSCIAALAMVTERHG 155
Query: 121 IFTGVLLKALH 131
+ ++ L
Sbjct: 156 LKEPKRVEELQ 166
Score = 46.5 bits (110), Expect = 1e-06
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 12/74 (16%)
Query: 231 SYISLLLRAEPYPTARYSQC------------MQPNNIMGIDNICELAARLLFSAVEWAR 278
S IS L+RA + M ++ I +L + WA
Sbjct: 1 SLISALVRAHVDSNPAMTSLDYSRFQANPDYQMSGDDTQHIQQFYDLLTGSMEIIRGWAE 60
Query: 279 NIPFFPDLQHRSGV 292
IP F DL
Sbjct: 61 KIPGFADLPKADQD 74
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 93.1 bits (231), Expect = 3e-23
Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 3/120 (2%)
Query: 2 GIDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVA 61
+ +L + ++A IP + DL DQ L + ELFVL + +
Sbjct: 37 KVQQFYQLLTSSVDVIKQFAEKIPGYFDLLPEDQELLFQSASLELFVLRLAYRARI-DDT 95
Query: 62 PLLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
L+ G R +F + + E L L +D + ++CL A+ L T +
Sbjct: 96 KLIFCNGTVLHRTQCLR--SFGEWLNDIMEFSRSLHNLEIDISAFACLCALTLITERHGL 153
Score = 39.2 bits (91), Expect = 3e-04
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 231 SYISLLLRAEPYPTARYSQC-------MQPNNIMGIDNICELAARLLFSAVEWARNIPFF 283
S I+ L+R+ T S + + +L + ++A IP +
Sbjct: 3 SLITALVRSHVDTTPDPSCLDYSHYEEQSMSEADKVQQFYQLLTSSVDVIKQFAEKIPGY 62
Query: 284 PDL 286
DL
Sbjct: 63 FDL 65
>d1pq9a_ a.123.1.1 (A:) Oxysterols receptor LXR-beta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 239
Score = 92.0 bits (228), Expect = 9e-23
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
ELA + V++A+ +P F L DQ+ALL+ E+ +L ++ +
Sbjct: 52 FTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNH-ETECITF 110
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
S R ++ I E ++ L +D AEY+ L AI +F+
Sbjct: 111 LKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFS 161
Score = 38.5 bits (89), Expect = 5e-04
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 225 HSSYLSSYISLLLRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFP 284
S + P+P Q + ELA + V++A+ +P F
Sbjct: 16 QLQCNKRSFSDQPKVTPWPLGADPQSRDARQQR-FAHFTELAIISVQEIVDFAKQVPGFL 74
Query: 285 DLQHRSGV 292
L +
Sbjct: 75 QLGREDQI 82
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 92.0 bits (228), Expect = 9e-23
Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ +L + L +WA IP F +L DQ LL + ELF+L + S P
Sbjct: 41 VQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKL 100
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
+ + + A F D I L +L VD ++CL A+VL T +
Sbjct: 101 IFCSGLVLHRLQCAR---GFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLITDRHGL 156
Score = 34.2 bits (78), Expect = 0.012
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQH 288
+ +L + L +WA IP F +L
Sbjct: 41 VQQFYDLLSGSLEVIRKWAEKIPGFAELSP 70
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 88.9 bits (220), Expect = 9e-22
Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 5/111 (4%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
+ E+A + VE+ + +P F L DQ+ALL+ E L +++ L
Sbjct: 46 ILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFN-----KKL 100
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+ ++I + + L + EY+ L AIV+
Sbjct: 101 PSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVIL 151
Score = 38.8 bits (90), Expect = 4e-04
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 261 NICELAARLLFSAVEWARNIPFFPDL 286
+ E+A + VE+ + +P F L
Sbjct: 46 ILTEMATNHVQVLVEFTKKLPGFQTL 71
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 90.0 bits (223), Expect = 1e-21
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 1/110 (0%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
+ E+A++IP F L + DQV LL+ E + +
Sbjct: 75 CQCTTVETVRELTEFAKSIPSFSSLFLNDQVTLLKYGVHEAIFAMLASIVNK-DGLLVAN 133
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+G F D I E K AL +D ++ + A ++
Sbjct: 134 GSGFVTREFLRSLRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIIL 183
Score = 30.7 bits (69), Expect = 0.16
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDL 286
+ E+A++IP F L
Sbjct: 75 CQCTTVETVRELTEFAKSIPSFSSL 99
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 90.2 bits (223), Expect = 1e-21
Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 5 NICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLL 64
++ +++ + + +A+ I +F DL + DQ++LL+ EL L +
Sbjct: 101 HMADMSTYMFKGIISFAKVISYFRDLPIEDQISLLKGAAFELCQLRFNTVFNA---ETGT 157
Query: 65 AAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
G + + + + LK L + EY ++AI LF
Sbjct: 158 WECGRLSYCLEDTAGGFQQLLLEPMLKFHYMLKKLQLHEEEYVLMQAISLF 208
Score = 38.2 bits (88), Expect = 8e-04
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 7/98 (7%)
Query: 192 LPGGLGPGQFAALTNGDSASAASAAIAAAGLNGHSSYLSSYISLLLRAEPYPTARYSQCM 251
LPG L G + + +A + S +SL LR E Y
Sbjct: 33 LPGVLSSGCELPESLQAPSREEAAKWS----QVRKDLCSLKVSLQLRGEDGSVWNYKPPA 88
Query: 252 QPNNIMGIDN---ICELAARLLFSAVEWARNIPFFPDL 286
+ +++ + + +A+ I +F DL
Sbjct: 89 DSGGKEIFSLLPHMADMSTYMFKGIISFAKVISYFRDL 126
>d2fvja1 a.123.1.1 (A:207-477) Peroxisome proliferator activated
receptor gamma, PPAR-gamma {Human (Homo sapiens) [TaxId:
9606]}
Length = 271
Score = 88.1 bits (218), Expect = 5e-21
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Query: 7 CELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLAA 66
+ + E+A++IP F +L + DQV LL+ E+ + +
Sbjct: 80 QFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNK-DGVLISEG 138
Query: 67 AGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
G F D + E K AL +D ++ + A+++
Sbjct: 139 QGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIIL 187
Score = 32.2 bits (73), Expect = 0.052
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 218 AAAGLNGHSSYLSSYI----SLLLRAEPYPTARYSQCMQPNNIMGIDNI----CELAARL 269
A A L G ++ S ++ + L+ E ++ +Q + I +
Sbjct: 27 ARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFKHITPLQEQSKEVAIRIFQGCQFRSVEA 86
Query: 270 LFSAVEWARNIPFFPDL 286
+ E+A++IP F +L
Sbjct: 87 VQEITEYAKSIPGFVNL 103
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 86.2 bits (213), Expect = 1e-20
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 2/110 (1%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
++ + V++A+ +P F +L DQ+ LL+ E+ L A+ P L
Sbjct: 62 FTKIITPAITRVVDFAKKLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTL- 120
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
G A + + L + ++D E + L+A++L
Sbjct: 121 -NGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDTEVALLQAVLLM 169
Score = 34.6 bits (79), Expect = 0.009
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDL 286
++ + V++A+ +P F +L
Sbjct: 62 FTKIITPAITRVVDFAKKLPMFCEL 86
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 84.7 bits (209), Expect = 4e-20
Identities = 21/114 (18%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ + ++ ++ +++ +++P F L + DQ++LL+ E+ + + + L
Sbjct: 56 VTHFADINTFMVLQVIKFTKDLPVFRSLPIEDQISLLKGAAVEICHIVLNT-TFCLQTQN 114
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L L + RV ++ + + L+ L + EY L A+ LF+
Sbjct: 115 FL-CGPLRYTIEDGARVGFQVEFLELLFHFHGTLRKLQLQEPEYVLLAAMALFS 167
Score = 31.6 bits (71), Expect = 0.095
Identities = 3/30 (10%), Positives = 15/30 (50%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQH 288
+ + ++ ++ +++ +++P F L
Sbjct: 56 VTHFADINTFMVLQVIKFTKDLPVFRSLPI 85
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 83.9 bits (207), Expect = 9e-20
Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
I E+ + VE+A+ +P F + +DQ+ LL+ SE+ +L ++ + L
Sbjct: 53 ITEMTILTVQLIVEFAKGLPGFAKISQSDQITLLKACSSEVMMLRVARRYDAATDSVLF- 111
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRI 121
A A R I + ++ +D+ Y+ L AIV+F+ +
Sbjct: 112 -ANNQAYTRDNYRKAGMAYVIEDLLHFCRCMYSMMMDNVHYALLTAIVIFSDRPGL 166
Score = 35.4 bits (81), Expect = 0.006
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDL 286
I E+ + VE+A+ +P F +
Sbjct: 53 ITEMTILTVQLIVEFAKGLPGFAKI 77
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 84.3 bits (208), Expect = 1e-19
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 1/110 (0%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
+ + E+A+ IP F +L + DQV LL+ E S +
Sbjct: 75 CQCTSVETVTELTEFAKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNK-DGMLVAY 133
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
G F D + + K AL +D ++ S A ++
Sbjct: 134 GNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALELDDSDISLFVAAIIC 183
Score = 32.3 bits (73), Expect = 0.056
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 236 LLRAEPYPTARY--SQCMQPNNIMGIDNIC-ELAARLLFSAVEWARNIPFFPDLQH 288
L AE A+ + + I + C + + E+A+ IP F +L
Sbjct: 46 LCMAEKTLVAKLVANGIQNKEAEVRIFHCCQCTSVETVTELTEFAKAIPGFANLDL 101
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 82.0 bits (202), Expect = 5e-19
Identities = 21/112 (18%), Positives = 46/112 (41%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
+ +L + + + +A+ IP F DL DQ+ LL+ E+ +L +++ ++
Sbjct: 62 LADLVSYSIQKVIGFAKMIPGFRDLTSEDQIVLLKSSAIEVIMLRSNESFTMDDMSWTCG 121
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTT 117
+ ++ I + LK L++ E+ L AI + +
Sbjct: 122 NQDYKYRVSDVTKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSP 173
Score = 26.6 bits (58), Expect = 4.0
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 262 ICELAARLLFSAVEWARNIPFFPDLQH 288
+ +L + + + +A+ IP F DL
Sbjct: 62 LADLVSYSIQKVIGFAKMIPGFRDLTS 88
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 80.1 bits (197), Expect = 2e-18
Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
Query: 3 IDNICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAP 62
+ + ++ ++ +++ +++P F L + DQ++LL+ E+ ++ +
Sbjct: 55 LTHFADINTFMVQQIIKFTKDLPLFRSLTMEDQISLLKGAAVEILHISLNTTFCLQ--TE 112
Query: 63 LLAAAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFT 116
L A + + + LK LH+ EY + A LF+
Sbjct: 113 NFFCGPLCYKMEDAVHAGFQYEFLESILHFHKNLKGLHLQEPEYVLMAATALFS 166
Score = 31.6 bits (71), Expect = 0.095
Identities = 3/30 (10%), Positives = 15/30 (50%)
Query: 259 IDNICELAARLLFSAVEWARNIPFFPDLQH 288
+ + ++ ++ +++ +++P F L
Sbjct: 55 LTHFADINTFMVQQIIKFTKDLPLFRSLTM 84
>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 244
Score = 77.1 bits (189), Expect = 3e-17
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 3/110 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
+ VE+A+ I F +L DQ+ LL+ E+ ++ + PL+ L
Sbjct: 55 CAIQITHAIQYVVEFAKRITGFMELCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFE 114
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLF 115
+ + D + + + L +L + E + + VL
Sbjct: 115 GKYGGMQMF---KALGSDDLVNEAFDFAKNLCSLQLTEEEIALFSSAVLI 161
Score = 26.6 bits (58), Expect = 3.6
Identities = 7/52 (13%), Positives = 14/52 (26%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDLQH 288
L + + + + VE+A+ I F +L
Sbjct: 30 LAWQTHTYEEIKAYQSKSREALWQQCAIQITHAIQYVVEFAKRITGFMELCQ 81
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 76.3 bits (187), Expect = 6e-17
Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 3/150 (2%)
Query: 6 ICELAARLLFSAVEWARNIPFFPDLQVTDQVALLRLVWSELFVLNASQCSMPLHVAPLLA 65
+ VE+A+ I F +L DQ+ LL+ E+ + + + +
Sbjct: 63 CAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQN--NTVY 120
Query: 66 AAGLHASPMAADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIVLFTTGKRIFTGV 125
G +ASP + + D I E + L ++H+ E + A VL + +
Sbjct: 121 FDGKYASPDVF-KSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEK 179
Query: 126 LLKALHVDSAEYSCLKAIVLFTTGKRMFGK 155
+ + + + + K
Sbjct: 180 VKIEKLQQKIQLALQHVLQKNHREDGILTK 209
Score = 33.9 bits (77), Expect = 0.014
Identities = 6/50 (12%), Positives = 14/50 (28%)
Query: 237 LRAEPYPTARYSQCMQPNNIMGIDNICELAARLLFSAVEWARNIPFFPDL 286
+ + + + + VE+A+ I F +L
Sbjct: 38 ITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVEFAKRIDGFMEL 87
>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1
[TaxId: 10298]}
Length = 615
Score = 26.7 bits (59), Expect = 4.1
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 17/93 (18%)
Query: 40 RLVWSELFVLNASQCSMPLHVAPLLAAAGLHASPMAADR---VVAFMDHIRVFQEQVEKL 96
+W+E LN P A+ ++A V+A + V + V
Sbjct: 426 LTLWNEARKLN-----------PNAIASVTVGRRVSARMLGDVMAVSTCVPVAADNVIVQ 474
Query: 97 KALHVDSAEYSCL-KAIVLF--TTGKRIFTGVL 126
++ + S +C + +V F + G L
Sbjct: 475 NSMRISSRPGACYSRPLVSFRYEDQGPLVEGQL 507
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.134 0.403
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,059,193
Number of extensions: 45228
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 81
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.3 bits)