Query psy16151
Match_columns 299
No_of_seqs 334 out of 1671
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 22:09:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0450 AhpC Peroxiredoxin [Po 100.0 1.6E-33 3.4E-38 233.8 16.9 168 64-233 2-172 (194)
2 COG1225 Bcp Peroxiredoxin [Pos 100.0 8.2E-33 1.8E-37 224.9 16.8 149 63-222 2-156 (157)
3 PRK10382 alkyl hydroperoxide r 100.0 5.2E-32 1.1E-36 229.8 17.8 164 65-231 2-166 (187)
4 PTZ00137 2-Cys peroxiredoxin; 100.0 1.6E-31 3.5E-36 236.4 19.2 170 63-233 66-236 (261)
5 PRK15000 peroxidase; Provision 100.0 2.8E-31 6.1E-36 228.0 19.5 186 66-252 3-194 (200)
6 PRK13190 putative peroxiredoxi 100.0 6E-31 1.3E-35 226.6 18.2 161 65-230 2-162 (202)
7 PTZ00253 tryparedoxin peroxida 100.0 5.8E-31 1.3E-35 226.4 17.3 163 63-225 4-167 (199)
8 PRK13599 putative peroxiredoxi 100.0 2.1E-30 4.6E-35 224.7 19.3 183 65-251 2-193 (215)
9 PRK13191 putative peroxiredoxi 100.0 1.5E-30 3.2E-35 225.8 18.0 163 64-231 6-170 (215)
10 cd03015 PRX_Typ2cys Peroxiredo 100.0 4.9E-30 1.1E-34 215.9 18.2 164 67-230 1-165 (173)
11 TIGR03137 AhpC peroxiredoxin. 100.0 3.3E-30 7.1E-35 219.6 16.5 163 66-231 3-166 (187)
12 PRK13189 peroxiredoxin; Provis 100.0 1.7E-29 3.7E-34 220.3 18.6 165 64-233 8-174 (222)
13 cd03016 PRX_1cys Peroxiredoxin 100.0 2.8E-29 6.2E-34 216.4 18.7 178 67-249 1-185 (203)
14 KOG0852|consensus 100.0 1.1E-28 2.4E-33 199.5 15.7 170 64-233 3-172 (196)
15 PRK00522 tpx lipid hydroperoxi 100.0 1.6E-27 3.5E-32 199.4 17.6 146 62-219 15-166 (167)
16 cd03018 PRX_AhpE_like Peroxire 100.0 1.4E-27 3.1E-32 195.5 15.9 145 65-219 1-148 (149)
17 PRK09437 bcp thioredoxin-depen 100.0 3E-27 6.4E-32 195.1 16.1 146 63-219 2-153 (154)
18 cd03014 PRX_Atyp2cys Peroxired 100.0 3.9E-27 8.4E-32 191.8 16.5 139 66-216 1-142 (143)
19 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 5.7E-27 1.2E-31 185.7 13.2 124 67-200 1-124 (124)
20 cd03013 PRX5_like Peroxiredoxi 99.9 5.9E-26 1.3E-30 187.6 15.5 133 67-207 1-143 (155)
21 PF08534 Redoxin: Redoxin; In 99.9 4.6E-26 1E-30 186.1 14.2 133 66-206 1-136 (146)
22 cd03017 PRX_BCP Peroxiredoxin 99.9 4.5E-26 9.8E-31 184.5 13.8 136 69-215 1-139 (140)
23 KOG0854|consensus 99.9 3.5E-25 7.7E-30 179.2 14.2 191 63-257 4-207 (224)
24 cd02971 PRX_family Peroxiredox 99.9 2.4E-24 5.3E-29 174.2 15.9 128 70-206 1-131 (140)
25 cd02969 PRX_like1 Peroxiredoxi 99.9 1.2E-23 2.6E-28 176.6 15.9 154 68-238 1-168 (171)
26 cd02970 PRX_like2 Peroxiredoxi 99.9 1.1E-23 2.3E-28 172.0 12.5 123 70-202 1-147 (149)
27 cd00340 GSH_Peroxidase Glutath 99.9 2.8E-23 6.2E-28 171.1 10.1 122 71-204 2-142 (152)
28 PLN02399 phospholipid hydroper 99.9 9.2E-23 2E-27 178.4 13.8 143 64-221 72-233 (236)
29 PTZ00056 glutathione peroxidas 99.9 7.6E-23 1.6E-27 175.7 12.5 142 65-221 13-177 (199)
30 PLN02412 probable glutathione 99.9 1E-22 2.2E-27 170.4 11.8 138 69-221 7-163 (167)
31 cd03012 TlpA_like_DipZ_like Tl 99.9 1.1E-22 2.4E-27 162.2 10.9 107 83-203 12-124 (126)
32 PTZ00256 glutathione peroxidas 99.9 1.2E-22 2.6E-27 172.5 10.8 139 68-221 17-180 (183)
33 TIGR02540 gpx7 putative glutat 99.9 3.5E-22 7.6E-27 164.7 12.8 132 72-221 3-152 (153)
34 PRK15412 thiol:disulfide inter 99.9 1.8E-22 3.8E-27 171.7 10.9 122 65-205 39-163 (185)
35 PRK03147 thiol-disulfide oxido 99.9 3E-21 6.5E-26 161.8 15.9 138 63-221 33-171 (173)
36 TIGR02661 MauD methylamine deh 99.9 1.7E-21 3.6E-26 166.2 13.8 132 64-218 45-178 (189)
37 cd02968 SCO SCO (an acronym fo 99.9 7E-21 1.5E-25 154.4 13.3 121 70-201 1-140 (142)
38 cd03010 TlpA_like_DsbE TlpA-li 99.9 4.9E-21 1.1E-25 152.7 11.6 118 69-204 1-120 (127)
39 cd02967 mauD Methylamine utili 99.9 1.2E-20 2.6E-25 147.4 12.9 110 72-201 1-112 (114)
40 TIGR00385 dsbE periplasmic pro 99.9 7.9E-21 1.7E-25 159.9 12.4 132 64-220 33-169 (173)
41 KOG0855|consensus 99.8 1.1E-20 2.3E-25 152.0 12.2 147 63-219 61-209 (211)
42 cd03008 TryX_like_RdCVF Trypar 99.8 3.4E-20 7.3E-25 150.8 10.3 103 85-201 16-129 (146)
43 PRK14018 trifunctional thiored 99.8 5.5E-19 1.2E-23 169.8 15.5 132 65-219 32-170 (521)
44 TIGR01626 ytfJ_HI0045 conserve 99.8 2E-19 4.4E-24 151.3 10.7 147 60-221 18-182 (184)
45 cd02966 TlpA_like_family TlpA- 99.8 1.2E-18 2.7E-23 134.3 12.0 112 73-201 1-114 (116)
46 PLN02919 haloacid dehalogenase 99.8 5.5E-19 1.2E-23 184.2 12.3 130 62-203 388-521 (1057)
47 cd03009 TryX_like_TryX_NRX Try 99.8 1.1E-18 2.4E-23 139.8 9.4 110 81-201 5-116 (131)
48 PRK10606 btuE putative glutath 99.8 6.8E-18 1.5E-22 142.7 14.2 139 69-221 3-180 (183)
49 cd03011 TlpA_like_ScsD_MtbDsbE 99.8 4E-18 8.6E-23 134.9 11.8 108 72-202 1-110 (123)
50 cd02964 TryX_like_family Trypa 99.8 2.8E-18 6.1E-23 137.9 10.9 105 81-201 5-116 (132)
51 PRK13728 conjugal transfer pro 99.7 2.9E-17 6.3E-22 137.5 11.3 120 65-221 49-170 (181)
52 COG2077 Tpx Peroxiredoxin [Pos 99.7 5.6E-16 1.2E-20 123.3 12.5 131 60-202 13-148 (158)
53 PF02630 SCO1-SenC: SCO1/SenC; 99.7 3.9E-16 8.5E-21 131.4 10.0 126 67-202 28-172 (174)
54 PF13905 Thioredoxin_8: Thiore 99.7 4.3E-16 9.4E-21 117.6 9.2 91 94-197 1-95 (95)
55 COG1999 Uncharacterized protei 99.6 1.8E-14 3.9E-19 124.3 12.6 140 73-222 49-204 (207)
56 COG0678 AHP1 Peroxiredoxin [Po 99.5 1.4E-13 3.1E-18 109.3 12.2 135 64-204 2-148 (165)
57 TIGR02738 TrbB type-F conjugat 99.5 7.2E-14 1.6E-18 114.9 9.2 105 82-220 42-151 (153)
58 KOG3619|consensus 99.5 1E-14 2.2E-19 146.0 3.8 74 205-278 761-841 (867)
59 KOG0541|consensus 99.4 1.9E-12 4.2E-17 103.5 9.7 141 61-207 5-157 (171)
60 KOG2792|consensus 99.4 1.6E-12 3.4E-17 112.3 7.4 137 72-219 120-272 (280)
61 cd02950 TxlA TRX-like protein 99.3 6.1E-12 1.3E-16 102.4 7.7 85 85-203 9-95 (142)
62 KOG4171|consensus 99.3 1.7E-12 3.7E-17 125.9 3.8 88 190-282 526-622 (671)
63 COG0386 BtuE Glutathione perox 99.2 4.6E-11 9.9E-16 95.8 9.6 121 71-202 5-144 (162)
64 TIGR02740 TraF-like TraF-like 99.2 2.3E-11 5E-16 109.3 8.1 107 84-221 156-263 (271)
65 KOG2501|consensus 99.2 7.5E-11 1.6E-15 95.7 9.7 107 81-201 19-132 (157)
66 cd02985 TRX_CDSP32 TRX family, 99.2 1.8E-10 3.8E-15 88.5 10.8 90 90-219 11-100 (103)
67 KOG1023|consensus 99.1 7E-11 1.5E-15 113.0 3.0 79 205-284 393-479 (484)
68 cd02951 SoxW SoxW family; SoxW 99.0 1.3E-09 2.9E-14 86.4 9.4 103 93-222 12-119 (125)
69 KOG1651|consensus 99.0 1.8E-09 3.8E-14 87.8 9.2 124 69-202 12-153 (171)
70 cd02948 TRX_NDPK TRX domain, T 99.0 4.6E-09 9.9E-14 80.4 10.4 86 93-220 16-101 (102)
71 cd02999 PDI_a_ERp44_like PDIa 99.0 3.2E-09 7E-14 81.1 9.4 74 90-201 14-87 (100)
72 cd02963 TRX_DnaJ TRX domain, D 99.0 7.8E-09 1.7E-13 80.4 11.4 90 91-220 21-110 (111)
73 PF00837 T4_deiodinase: Iodoth 98.9 9E-09 2E-13 89.1 10.9 143 61-221 69-236 (237)
74 KOG3618|consensus 98.9 5.6E-10 1.2E-14 108.7 2.3 77 207-284 1192-1275(1318)
75 cd02956 ybbN ybbN protein fami 98.9 3E-08 6.4E-13 74.6 10.3 72 93-201 11-82 (96)
76 PF13098 Thioredoxin_2: Thiore 98.8 1.1E-08 2.5E-13 79.1 7.5 104 93-217 4-111 (112)
77 cd02953 DsbDgamma DsbD gamma f 98.8 3.7E-08 7.9E-13 75.4 8.8 77 93-201 10-90 (104)
78 PRK09381 trxA thioredoxin; Pro 98.7 1.2E-07 2.5E-12 73.2 10.5 87 93-220 20-106 (109)
79 cd02954 DIM1 Dim1 family; Dim1 98.7 7.8E-08 1.7E-12 74.9 9.3 75 93-204 13-87 (114)
80 PF00255 GSHPx: Glutathione pe 98.7 1.1E-07 2.4E-12 73.3 9.6 81 73-164 3-91 (108)
81 cd03002 PDI_a_MPD1_like PDI fa 98.7 9.8E-08 2.1E-12 73.4 8.9 70 93-196 17-86 (109)
82 cd02993 PDI_a_APS_reductase PD 98.7 1.9E-07 4.2E-12 72.2 9.3 75 93-201 20-95 (109)
83 cd02994 PDI_a_TMX PDIa family, 98.6 3.6E-07 7.8E-12 69.4 10.3 85 93-219 16-100 (101)
84 cd02959 ERp19 Endoplasmic reti 98.6 1.1E-07 2.3E-12 74.8 7.2 82 88-202 13-94 (117)
85 PRK10996 thioredoxin 2; Provis 98.6 4.7E-07 1E-11 73.3 11.0 87 93-220 51-137 (139)
86 PHA02278 thioredoxin-like prot 98.6 4.6E-07 1E-11 69.5 9.7 78 93-203 13-90 (103)
87 cd02962 TMX2 TMX2 family; comp 98.6 4.5E-07 9.8E-12 74.4 10.1 81 93-203 46-126 (152)
88 KOG0907|consensus 98.6 7.2E-07 1.5E-11 68.7 10.4 84 93-219 20-103 (106)
89 KOG0910|consensus 98.6 3E-07 6.5E-12 74.2 8.3 73 93-202 60-132 (150)
90 cd03000 PDI_a_TMX3 PDIa family 98.6 5.7E-07 1.2E-11 68.8 9.5 87 93-220 14-102 (104)
91 cd02984 TRX_PICOT TRX domain, 98.5 1E-06 2.2E-11 66.2 10.1 72 94-202 14-85 (97)
92 cd02949 TRX_NTR TRX domain, no 98.5 1.3E-06 2.8E-11 66.0 10.4 73 93-202 12-84 (97)
93 cd03003 PDI_a_ERdj5_N PDIa fam 98.5 5.3E-07 1.1E-11 68.5 8.1 72 93-201 17-88 (101)
94 cd02997 PDI_a_PDIR PDIa family 98.5 1.4E-06 3E-11 66.1 10.0 75 93-201 16-91 (104)
95 cd03004 PDI_a_ERdj5_C PDIa fam 98.5 1E-06 2.2E-11 67.2 9.0 73 93-201 18-90 (104)
96 cd03005 PDI_a_ERp46 PDIa famil 98.5 1.2E-06 2.6E-11 66.3 9.2 72 96-203 18-91 (102)
97 TIGR01126 pdi_dom protein disu 98.5 1.6E-06 3.6E-11 65.3 9.7 88 93-220 12-100 (102)
98 cd02996 PDI_a_ERp44 PDIa famil 98.5 1.8E-06 3.9E-11 66.5 9.7 74 93-198 17-91 (108)
99 cd02986 DLP Dim1 family, Dim1- 98.4 1.5E-06 3.2E-11 67.4 9.0 74 93-203 13-86 (114)
100 PTZ00051 thioredoxin; Provisio 98.4 1.8E-06 3.8E-11 65.0 9.2 73 93-203 17-89 (98)
101 PF05988 DUF899: Bacterial pro 98.4 7.8E-06 1.7E-10 69.7 13.6 152 64-231 39-199 (211)
102 cd02952 TRP14_like Human TRX-r 98.4 9.4E-07 2E-11 69.5 7.1 77 93-197 20-103 (119)
103 cd03006 PDI_a_EFP1_N PDIa fami 98.4 2.7E-06 5.8E-11 66.4 8.9 72 93-201 28-100 (113)
104 TIGR01295 PedC_BrcD bacterioci 98.4 2.2E-06 4.8E-11 67.8 8.4 93 86-204 10-109 (122)
105 cd02998 PDI_a_ERp38 PDIa famil 98.4 2.4E-06 5.3E-11 64.7 8.4 74 94-201 18-92 (105)
106 PLN00410 U5 snRNP protein, DIM 98.3 6.2E-06 1.3E-10 66.7 10.8 93 93-221 22-119 (142)
107 TIGR01068 thioredoxin thioredo 98.3 5.8E-06 1.3E-10 62.0 10.0 85 94-219 14-98 (101)
108 PF00085 Thioredoxin: Thioredo 98.3 9.1E-06 2E-10 61.3 10.8 85 94-219 17-101 (103)
109 PTZ00443 Thioredoxin domain-co 98.3 5.5E-06 1.2E-10 72.3 10.5 96 94-230 52-147 (224)
110 TIGR02739 TraF type-F conjugat 98.3 3.5E-06 7.6E-11 74.7 9.2 85 88-199 144-228 (256)
111 cd02961 PDI_a_family Protein D 98.3 4.2E-06 9.2E-11 62.4 8.4 74 93-201 14-88 (101)
112 cd02955 SSP411 TRX domain, SSP 98.3 1.1E-05 2.5E-10 63.9 11.1 100 92-220 13-120 (124)
113 PF13911 AhpC-TSA_2: AhpC/TSA 98.3 5.6E-06 1.2E-10 64.6 8.8 79 117-202 2-112 (115)
114 cd02975 PfPDO_like_N Pyrococcu 98.3 8.3E-06 1.8E-10 63.6 9.6 85 94-218 22-109 (113)
115 cd02992 PDI_a_QSOX PDIa family 98.2 8.1E-06 1.7E-10 63.7 9.1 69 94-195 19-89 (114)
116 COG3118 Thioredoxin domain-con 98.2 3.6E-06 7.9E-11 75.1 7.6 74 93-203 42-115 (304)
117 cd02965 HyaE HyaE family; HyaE 98.2 1.1E-05 2.3E-10 62.6 9.1 74 93-203 26-101 (111)
118 PRK00293 dipZ thiol:disulfide 98.2 5.6E-06 1.2E-10 82.0 9.5 95 90-221 470-569 (571)
119 cd02957 Phd_like Phosducin (Ph 98.2 1.1E-05 2.3E-10 62.8 8.9 71 94-203 24-94 (113)
120 cd02989 Phd_like_TxnDC9 Phosdu 98.2 2.4E-05 5.3E-10 60.9 10.8 74 93-204 21-94 (113)
121 cd03001 PDI_a_P5 PDIa family, 98.2 2.1E-05 4.6E-10 59.5 9.9 84 94-217 18-101 (103)
122 PF13728 TraF: F plasmid trans 98.2 1.4E-05 2.9E-10 69.6 9.5 88 87-201 113-200 (215)
123 cd03065 PDI_b_Calsequestrin_N 98.1 2.5E-05 5.4E-10 61.6 10.0 85 96-221 29-118 (120)
124 PRK13703 conjugal pilus assemb 98.1 1.2E-05 2.6E-10 71.0 8.8 100 89-219 138-238 (248)
125 TIGR00424 APS_reduc 5'-adenyly 98.1 2E-05 4.3E-10 75.7 10.8 93 93-221 370-462 (463)
126 cd02947 TRX_family TRX family; 98.1 4.8E-05 1E-09 55.4 10.0 70 95-202 11-80 (93)
127 PLN02309 5'-adenylylsulfate re 98.0 6.1E-05 1.3E-09 72.3 11.0 92 93-221 364-456 (457)
128 PTZ00062 glutaredoxin; Provisi 97.9 8.6E-05 1.9E-09 63.9 10.3 113 96-259 19-146 (204)
129 TIGR00411 redox_disulf_1 small 97.9 0.00023 5E-09 51.4 10.0 38 98-137 3-40 (82)
130 cd02987 Phd_like_Phd Phosducin 97.8 7.2E-05 1.6E-09 62.9 8.1 72 94-204 83-154 (175)
131 PF09695 YtfJ_HI0045: Bacteria 97.8 0.00026 5.6E-09 57.7 10.6 142 66-219 2-158 (160)
132 PTZ00102 disulphide isomerase; 97.8 0.00014 3.1E-09 70.4 10.9 92 93-223 374-466 (477)
133 PF00211 Guanylate_cyc: Adenyl 97.8 1.5E-05 3.2E-10 67.1 3.4 53 227-279 127-184 (184)
134 PTZ00102 disulphide isomerase; 97.8 0.00018 3.9E-09 69.6 10.4 92 93-223 48-139 (477)
135 TIGR02187 GlrX_arch Glutaredox 97.7 0.00029 6.3E-09 61.2 10.0 91 92-218 17-110 (215)
136 TIGR01130 ER_PDI_fam protein d 97.7 0.00024 5.3E-09 68.2 10.4 90 93-222 17-109 (462)
137 cd02988 Phd_like_VIAF Phosduci 97.7 0.00026 5.6E-09 60.5 8.9 70 94-204 102-171 (192)
138 cd02995 PDI_a_PDI_a'_C PDIa fa 97.7 9.1E-05 2E-09 55.9 5.5 43 94-137 18-61 (104)
139 cd02958 UAS UAS family; UAS is 97.6 0.00053 1.1E-08 53.3 9.4 91 92-220 15-109 (114)
140 PF05176 ATP-synt_10: ATP10 pr 97.6 0.00041 8.9E-09 61.7 9.6 141 68-219 98-250 (252)
141 PF04592 SelP_N: Selenoprotein 97.6 0.00025 5.4E-09 61.4 7.1 112 69-202 8-127 (238)
142 cd01659 TRX_superfamily Thiore 97.5 0.00056 1.2E-08 45.3 7.3 43 98-143 1-43 (69)
143 cd02960 AGR Anterior Gradient 97.5 0.0004 8.7E-09 55.3 7.1 23 93-116 22-44 (130)
144 COG0526 TrxA Thiol-disulfide i 97.5 0.00029 6.2E-09 53.0 5.9 49 87-137 25-73 (127)
145 TIGR00412 redox_disulf_2 small 97.5 0.00086 1.9E-08 48.3 8.0 35 99-137 3-37 (76)
146 KOG4498|consensus 97.5 0.0013 2.8E-08 55.0 9.9 131 81-218 36-194 (197)
147 COG4312 Uncharacterized protei 97.3 0.0028 6.1E-08 54.2 10.0 140 83-233 61-226 (247)
148 cd03026 AhpF_NTD_C TRX-GRX-lik 97.3 0.0021 4.5E-08 47.8 8.1 71 90-200 8-78 (89)
149 PF13899 Thioredoxin_7: Thiore 97.1 0.0029 6.2E-08 46.1 7.0 46 93-140 16-64 (82)
150 TIGR01130 ER_PDI_fam protein d 97.0 0.0027 5.8E-08 61.0 8.8 89 93-221 363-453 (462)
151 KOG0908|consensus 97.0 0.0022 4.8E-08 56.0 7.2 75 89-201 16-90 (288)
152 PF14595 Thioredoxin_9: Thiore 97.0 0.00065 1.4E-08 54.2 3.3 79 89-201 36-114 (129)
153 smart00594 UAS UAS domain. 96.9 0.016 3.4E-07 45.6 10.8 69 93-195 26-97 (122)
154 cd02982 PDI_b'_family Protein 96.9 0.0024 5.2E-08 48.1 5.6 42 93-136 11-52 (103)
155 PHA02125 thioredoxin-like prot 96.8 0.016 3.4E-07 41.4 9.1 21 98-119 2-22 (75)
156 PF13778 DUF4174: Domain of un 96.6 0.014 3.1E-07 45.7 8.1 110 88-222 2-112 (118)
157 KOG0190|consensus 96.5 0.0081 1.8E-07 57.9 7.5 92 95-224 43-134 (493)
158 cd02973 TRX_GRX_like Thioredox 96.4 0.014 3.1E-07 40.3 6.6 37 98-137 3-39 (67)
159 PF06110 DUF953: Eukaryotic pr 95.2 0.065 1.4E-06 42.0 6.1 51 93-147 18-74 (119)
160 PF03190 Thioredox_DsbH: Prote 95.2 0.11 2.3E-06 43.1 7.6 99 87-220 30-142 (163)
161 TIGR02187 GlrX_arch Glutaredox 94.9 0.11 2.5E-06 44.9 7.6 28 95-123 133-161 (215)
162 TIGR02200 GlrX_actino Glutared 94.9 0.063 1.4E-06 37.8 5.0 33 98-138 2-34 (77)
163 cd03007 PDI_a_ERp29_N PDIa fam 94.5 0.13 2.8E-06 40.2 6.2 97 93-220 17-114 (116)
164 TIGR02196 GlrX_YruB Glutaredox 94.5 0.14 3E-06 35.4 6.0 31 101-138 4-34 (74)
165 KOG0190|consensus 94.3 0.051 1.1E-06 52.5 4.2 34 93-127 383-416 (493)
166 cd02991 UAS_ETEA UAS family, E 93.7 0.56 1.2E-05 36.6 8.4 89 92-221 15-112 (116)
167 KOG0191|consensus 93.6 0.48 1E-05 44.8 9.4 33 93-126 46-78 (383)
168 cd07302 CHD cyclase homology d 93.6 0.068 1.5E-06 43.7 3.3 52 226-277 121-177 (177)
169 KOG3618|consensus 93.6 0.048 1E-06 54.7 2.6 64 220-283 452-530 (1318)
170 COG4232 Thiol:disulfide interc 93.6 0.074 1.6E-06 52.1 3.8 94 92-220 472-566 (569)
171 PRK10877 protein disulfide iso 93.5 0.76 1.6E-05 40.4 9.9 37 93-134 106-142 (232)
172 TIGR02180 GRX_euk Glutaredoxin 93.2 0.12 2.6E-06 37.1 3.7 35 99-137 2-36 (84)
173 PRK11657 dsbG disulfide isomer 93.1 0.58 1.3E-05 41.6 8.6 98 93-200 116-235 (251)
174 KOG0912|consensus 93.0 0.34 7.4E-06 43.9 6.8 90 95-220 14-104 (375)
175 PRK11509 hydrogenase-1 operon 92.6 1.3 2.7E-05 35.5 8.9 45 166-221 79-123 (132)
176 PF13192 Thioredoxin_3: Thiore 92.1 1.4 3E-05 31.3 8.0 21 104-124 7-27 (76)
177 PRK11200 grxA glutaredoxin 1; 91.0 0.67 1.4E-05 33.6 5.4 35 102-138 6-40 (85)
178 KOG3425|consensus 90.9 0.61 1.3E-05 36.4 5.2 56 89-148 19-82 (128)
179 COG2143 Thioredoxin-related pr 90.9 1.3 2.9E-05 36.2 7.4 109 91-223 39-150 (182)
180 cd02976 NrdH NrdH-redoxin (Nrd 90.5 0.79 1.7E-05 31.3 5.2 31 101-138 4-34 (73)
181 cd03020 DsbA_DsbC_DsbG DsbA fa 89.5 1.3 2.9E-05 37.6 6.8 26 93-119 76-101 (197)
182 cd03023 DsbA_Com1_like DsbA fa 89.3 0.6 1.3E-05 37.2 4.3 38 94-134 5-42 (154)
183 PF11009 DUF2847: Protein of u 89.1 1.5 3.3E-05 33.5 6.1 76 94-201 19-94 (105)
184 cd02066 GRX_family Glutaredoxi 88.9 1.1 2.4E-05 30.3 5.0 38 103-147 6-43 (72)
185 TIGR02190 GlrX-dom Glutaredoxi 88.2 1.1 2.4E-05 32.0 4.7 35 98-140 10-44 (79)
186 PF07976 Phe_hydrox_dim: Pheno 87.2 4.6 9.9E-05 33.6 8.4 116 60-177 25-165 (169)
187 TIGR03143 AhpF_homolog putativ 86.9 4.4 9.6E-05 40.3 9.6 30 95-124 476-505 (555)
188 PHA03050 glutaredoxin; Provisi 86.7 1 2.2E-05 34.6 3.9 25 94-120 12-36 (108)
189 TIGR02189 GlrX-like_plant Glut 85.7 1.2 2.6E-05 33.6 3.8 35 95-138 8-42 (99)
190 PF00462 Glutaredoxin: Glutare 85.3 1.6 3.5E-05 29.2 4.0 40 99-146 2-41 (60)
191 TIGR02183 GRXA Glutaredoxin, G 85.1 2.3 4.9E-05 31.0 5.0 35 101-137 4-38 (86)
192 PF13462 Thioredoxin_4: Thiore 84.9 2.6 5.5E-05 34.0 5.8 49 87-136 5-54 (162)
193 cd03419 GRX_GRXh_1_2_like Glut 84.6 1.3 2.9E-05 31.3 3.5 33 101-138 4-36 (82)
194 TIGR02194 GlrX_NrdH Glutaredox 82.8 2.4 5.2E-05 29.6 4.1 32 101-139 3-34 (72)
195 TIGR00365 monothiol glutaredox 82.5 3.7 8.1E-05 30.7 5.3 39 93-138 10-51 (97)
196 cd03029 GRX_hybridPRX5 Glutare 82.4 3.3 7.1E-05 28.7 4.7 29 103-138 7-35 (72)
197 PRK10329 glutaredoxin-like pro 81.8 4.5 9.7E-05 29.2 5.3 32 101-139 5-36 (81)
198 cd03418 GRX_GRXb_1_3_like Glut 81.1 4 8.7E-05 28.3 4.8 30 102-138 5-34 (75)
199 TIGR03143 AhpF_homolog putativ 80.6 19 0.00042 35.8 11.1 105 167-280 408-538 (555)
200 cd03028 GRX_PICOT_like Glutare 80.6 4.3 9.3E-05 29.8 5.0 39 93-138 6-47 (90)
201 TIGR03765 ICE_PFL_4695 integra 80.2 11 0.00025 28.6 7.1 68 112-195 35-102 (105)
202 COG0695 GrxC Glutaredoxin and 79.6 4.7 0.0001 29.0 4.8 40 103-149 7-48 (80)
203 PRK08294 phenol 2-monooxygenas 79.1 33 0.00072 34.8 12.4 127 62-201 460-615 (634)
204 PRK06183 mhpA 3-(3-hydroxyphen 79.0 20 0.00042 35.4 10.6 119 64-219 410-529 (538)
205 KOG1731|consensus 79.0 0.76 1.7E-05 45.0 0.6 42 96-138 59-102 (606)
206 KOG0191|consensus 78.8 2.8 6.2E-05 39.5 4.4 41 96-137 164-205 (383)
207 PRK06184 hypothetical protein; 78.5 17 0.00036 35.5 9.8 108 64-221 385-494 (502)
208 cd02979 PHOX_C FAD-dependent P 78.1 38 0.00082 28.0 11.4 121 68-201 1-152 (167)
209 PRK08132 FAD-dependent oxidore 77.9 19 0.00041 35.6 10.1 117 64-220 426-543 (547)
210 TIGR02181 GRX_bact Glutaredoxi 77.8 5 0.00011 28.3 4.5 30 102-138 4-33 (79)
211 COG2114 CyaA Adenylate cyclase 77.4 1.5 3.3E-05 38.2 1.9 57 224-280 155-216 (227)
212 COG3054 Predicted transcriptio 77.0 6.5 0.00014 32.1 5.2 154 60-221 18-182 (184)
213 PF11072 DUF2859: Protein of u 76.4 20 0.00043 29.0 7.9 68 112-195 73-140 (142)
214 PRK10638 glutaredoxin 3; Provi 76.0 6.2 0.00013 28.3 4.6 32 101-139 6-37 (83)
215 cd03019 DsbA_DsbA DsbA family, 75.2 6 0.00013 32.4 5.0 40 93-134 14-53 (178)
216 cd03027 GRX_DEP Glutaredoxin ( 74.6 8.4 0.00018 26.7 4.9 29 103-138 7-35 (73)
217 cd03032 ArsC_Spx Arsenate Redu 70.9 8.5 0.00018 29.7 4.5 63 100-176 3-69 (115)
218 PRK01655 spxA transcriptional 70.6 7.1 0.00015 31.0 4.1 65 99-177 2-70 (131)
219 KOG3619|consensus 69.7 1.4 2.9E-05 45.8 -0.3 74 206-281 207-291 (867)
220 PRK10954 periplasmic protein d 68.4 6.5 0.00014 33.6 3.7 40 93-134 36-78 (207)
221 PRK15317 alkyl hydroperoxide r 67.4 42 0.00092 33.0 9.7 38 95-134 116-153 (517)
222 cd02977 ArsC_family Arsenate R 65.8 8.3 0.00018 29.0 3.5 42 101-149 3-48 (105)
223 cd03036 ArsC_like Arsenate Red 65.7 8.1 0.00018 29.6 3.4 42 101-149 3-48 (111)
224 COG2179 Predicted hydrolase of 64.4 16 0.00034 30.4 5.0 38 112-149 46-83 (175)
225 PRK10824 glutaredoxin-4; Provi 64.3 14 0.00031 28.6 4.6 26 94-120 14-43 (115)
226 PRK12559 transcriptional regul 61.9 15 0.00032 29.2 4.3 64 100-177 3-70 (131)
227 TIGR01617 arsC_related transcr 61.2 12 0.00027 28.8 3.8 62 101-176 3-68 (117)
228 KOG4277|consensus 60.5 3.7 8E-05 37.3 0.7 34 96-130 45-78 (468)
229 COG1504 Uncharacterized conser 59.4 29 0.00062 26.8 5.2 67 184-256 18-90 (121)
230 TIGR03140 AhpF alkyl hydropero 57.6 81 0.0017 31.0 9.6 30 95-125 117-147 (515)
231 KOG0911|consensus 57.1 12 0.00026 32.5 3.3 43 93-138 16-58 (227)
232 COG1651 DsbG Protein-disulfide 56.2 33 0.00071 29.8 6.0 47 83-130 73-119 (244)
233 PRK13344 spxA transcriptional 53.5 27 0.00059 27.7 4.6 63 100-176 3-69 (132)
234 cd02972 DsbA_family DsbA famil 52.5 20 0.00044 25.3 3.5 33 102-135 4-36 (98)
235 PTZ00062 glutaredoxin; Provisi 52.4 30 0.00065 29.8 5.0 39 93-138 111-152 (204)
236 KOG0914|consensus 51.6 10 0.00022 32.9 1.9 77 95-201 145-221 (265)
237 PF06053 DUF929: Domain of unk 50.8 27 0.00058 31.1 4.5 33 93-126 57-89 (249)
238 PF08235 LNS2: LNS2 (Lipin/Ned 50.7 90 0.002 25.7 7.3 63 81-152 5-70 (157)
239 PF08821 CGGC: CGGC domain; I 50.5 46 0.001 25.5 5.2 46 86-136 27-73 (107)
240 PRK10026 arsenate reductase; P 49.4 67 0.0015 25.9 6.3 95 101-218 6-116 (141)
241 PF05768 DUF836: Glutaredoxin- 49.2 14 0.00029 26.5 2.0 53 100-165 3-55 (81)
242 PF04278 Tic22: Tic22-like fam 48.4 45 0.00097 30.1 5.6 84 69-167 73-161 (274)
243 PHA03075 glutaredoxin-like pro 47.1 18 0.00039 28.1 2.4 39 95-134 2-40 (123)
244 PF01106 NifU: NifU-like domai 45.0 47 0.001 23.1 4.2 34 83-118 15-48 (68)
245 cd03035 ArsC_Yffb Arsenate Red 44.5 31 0.00067 26.1 3.5 43 100-149 2-48 (105)
246 PF06491 Disulph_isomer: Disul 43.7 1.6E+02 0.0036 23.4 7.3 36 184-220 95-130 (136)
247 PRK12359 flavodoxin FldB; Prov 43.6 71 0.0015 26.6 5.8 43 91-134 76-118 (172)
248 smart00044 CYCc Adenylyl- / gu 43.4 2.8 6.1E-05 35.1 -2.8 32 226-257 156-191 (194)
249 COG0552 FtsY Signal recognitio 43.3 1.2E+02 0.0027 28.1 7.7 91 93-198 136-234 (340)
250 PRK12759 bifunctional gluaredo 41.0 52 0.0011 31.5 5.2 38 103-147 8-45 (410)
251 TIGR03759 conj_TIGR03759 integ 40.6 54 0.0012 28.1 4.6 47 97-149 111-158 (200)
252 TIGR00995 3a0901s06TIC22 chlor 39.9 1.5E+02 0.0034 26.6 7.6 78 69-167 80-161 (270)
253 COG1331 Highly conserved prote 39.8 88 0.0019 31.8 6.6 93 93-219 42-147 (667)
254 KOG2116|consensus 39.4 73 0.0016 32.3 5.9 53 115-168 561-616 (738)
255 COG2029 Uncharacterized conser 39.1 28 0.0006 28.8 2.5 43 244-299 91-134 (189)
256 PF10916 DUF2712: Protein of u 36.7 21 0.00046 28.7 1.5 11 267-277 73-83 (146)
257 cd08361 PpCmtC_N N-terminal do 34.8 1.3E+02 0.0028 22.8 5.8 60 130-204 61-120 (124)
258 COG1022 FAA1 Long-chain acyl-C 33.9 49 0.0011 33.5 3.9 73 195-279 353-438 (613)
259 PRK05370 argininosuccinate syn 33.6 60 0.0013 31.4 4.2 73 88-174 4-81 (447)
260 KOG0913|consensus 33.3 11 0.00024 33.0 -0.6 41 89-131 34-75 (248)
261 PF02114 Phosducin: Phosducin; 33.0 1.2E+02 0.0025 27.3 5.8 90 94-222 146-238 (265)
262 cd05126 Mth938 Mth938 domain. 32.1 1.3E+02 0.0029 23.2 5.3 70 185-260 17-91 (117)
263 PF10673 DUF2487: Protein of u 32.1 99 0.0022 25.0 4.7 47 91-138 47-95 (142)
264 PF04017 DUF366: Domain of unk 31.6 38 0.00082 28.4 2.2 26 244-269 88-114 (183)
265 cd07241 Glo_EDI_BRP_like_3 Thi 30.1 1.5E+02 0.0032 21.9 5.3 56 127-200 69-124 (125)
266 cd08343 ED_TypeI_classII_C C-t 30.1 2.4E+02 0.0052 21.4 6.7 60 127-203 58-117 (131)
267 PF14427 Pput2613-deam: Pput_2 30.0 62 0.0013 24.9 3.0 53 86-146 58-110 (118)
268 KOG1752|consensus 29.9 1.1E+02 0.0024 23.2 4.5 17 94-112 13-29 (104)
269 KOG3414|consensus 29.4 2E+02 0.0043 22.9 5.7 43 93-137 22-64 (142)
270 COG2957 Peptidylarginine deimi 29.1 4.7E+02 0.01 24.2 9.8 18 261-278 155-172 (346)
271 PF12681 Glyoxalase_2: Glyoxal 29.0 79 0.0017 22.8 3.5 15 186-200 93-107 (108)
272 cd09013 BphC-JF8_N_like N-term 27.9 2.2E+02 0.0047 21.1 6.0 56 128-202 62-117 (121)
273 cd03025 DsbA_FrnE_like DsbA fa 27.6 75 0.0016 26.1 3.5 32 99-131 3-34 (193)
274 PRK13738 conjugal transfer pil 27.1 4.1E+02 0.0089 22.9 11.0 92 84-201 108-200 (209)
275 PF13419 HAD_2: Haloacid dehal 27.0 1.9E+02 0.0041 22.6 5.8 36 114-149 79-114 (176)
276 TIGR01352 tonB_Cterm TonB fami 26.9 1.6E+02 0.0034 19.9 4.6 37 186-222 13-50 (74)
277 PLN03098 LPA1 LOW PSII ACCUMUL 26.8 1.1E+02 0.0025 29.6 4.9 52 83-137 285-337 (453)
278 PF06764 DUF1223: Protein of u 26.0 1.9E+02 0.0041 24.8 5.7 108 98-232 1-108 (202)
279 PF01740 STAS: STAS domain; I 25.9 1.5E+02 0.0033 22.2 4.7 42 95-138 49-90 (117)
280 cd02983 P5_C P5 family, C-term 25.8 3.2E+02 0.0069 21.4 6.6 45 169-221 70-114 (130)
281 cd07254 Glo_EDI_BRP_like_20 Th 25.8 2.1E+02 0.0045 21.1 5.5 59 128-202 58-116 (120)
282 COG3695 Predicted methylated D 25.6 54 0.0012 24.8 1.9 58 208-267 39-97 (103)
283 cd07255 Glo_EDI_BRP_like_12 Th 25.4 2.8E+02 0.0061 20.4 6.6 56 127-202 63-118 (125)
284 KOG4614|consensus 25.0 83 0.0018 27.8 3.2 33 186-219 249-281 (287)
285 cd03060 GST_N_Omega_like GST_N 24.8 1.2E+02 0.0026 20.5 3.6 17 102-118 4-20 (71)
286 PF15092 UPF0728: Uncharacteri 24.8 2.1E+02 0.0045 21.1 4.7 43 96-138 6-48 (88)
287 PF02966 DIM1: Mitosis protein 24.7 1.8E+02 0.004 23.2 4.9 44 93-138 19-62 (133)
288 PF01323 DSBA: DSBA-like thior 24.4 92 0.002 25.5 3.5 41 99-139 2-42 (193)
289 PF03544 TonB_C: Gram-negative 23.6 1.5E+02 0.0033 20.2 4.1 35 186-220 19-54 (79)
290 COG1393 ArsC Arsenate reductas 23.6 1.5E+02 0.0032 23.0 4.2 64 99-176 3-70 (117)
291 COG3019 Predicted metal-bindin 23.5 2E+02 0.0044 23.2 4.9 35 99-140 28-62 (149)
292 PRK15062 hydrogenase isoenzyme 23.0 4.4E+02 0.0095 24.9 7.8 63 99-169 54-121 (364)
293 PF14376 Haem_bd: Haem-binding 23.0 46 0.00099 26.6 1.3 23 241-263 30-52 (137)
294 KOG2961|consensus 22.8 3E+02 0.0065 22.8 5.8 70 86-166 34-116 (190)
295 cd08356 Glo_EDI_BRP_like_17 Th 22.6 1.8E+02 0.0039 21.6 4.5 15 186-200 97-111 (113)
296 COG3769 Predicted hydrolase (H 22.5 1.1E+02 0.0024 26.9 3.5 41 119-166 30-71 (274)
297 PF09673 TrbC_Ftype: Type-F co 22.2 3.2E+02 0.007 20.8 5.9 67 116-193 12-80 (113)
298 COG0525 ValS Valyl-tRNA synthe 22.2 2.3E+02 0.005 30.0 6.4 16 185-200 288-303 (877)
299 TIGR00075 hypD hydrogenase exp 21.9 4.8E+02 0.01 24.6 7.8 63 99-169 60-127 (369)
300 cd08351 ChaP_like ChaP, an enz 21.8 1.8E+02 0.0038 21.8 4.4 18 185-202 103-120 (123)
301 PRK04247 hypothetical protein; 21.7 3.2E+02 0.0069 24.1 6.3 68 188-260 164-232 (238)
302 TIGR02742 TrbC_Ftype type-F co 21.6 3.9E+02 0.0084 21.2 6.3 67 116-194 13-81 (130)
303 PRK06724 hypothetical protein; 21.6 2.2E+02 0.0047 22.0 4.9 61 127-202 62-122 (128)
304 TIGR02743 TraW type-F conjugat 21.3 5.3E+02 0.011 22.1 9.2 67 111-200 133-199 (202)
305 cd06844 STAS Sulphate Transpor 21.3 2.4E+02 0.0053 20.5 5.0 43 94-138 39-81 (100)
306 cd07242 Glo_EDI_BRP_like_6 Thi 21.1 2.3E+02 0.0049 21.1 4.9 60 127-201 67-126 (128)
307 cd01450 vWFA_subfamily_ECM Von 20.9 4E+02 0.0086 20.5 6.6 32 104-138 111-142 (161)
308 cd07252 BphC1-RGP6_N_like N-te 20.3 3.7E+02 0.008 19.9 7.0 61 128-203 57-117 (120)
309 cd07262 Glo_EDI_BRP_like_19 Th 20.3 1.7E+02 0.0038 21.6 4.1 59 128-201 64-122 (123)
310 TIGR00339 sopT ATP sulphurylas 20.2 7.5E+02 0.016 23.5 10.3 54 157-218 74-127 (383)
311 cd08347 PcpA_C_like C-terminal 20.0 4.6E+02 0.01 20.9 6.9 56 128-203 65-120 (157)
No 1
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=233.76 Aligned_cols=168 Identities=48% Similarity=0.862 Sum_probs=157.1
Q ss_pred ccCCCCCCCCcEEeeeeCCCC---ceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151 64 FKLVSKPAPFWQGTAVVDGQL---KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 140 (299)
Q Consensus 64 ~l~~G~~aPdF~L~~~~~~~G---~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~ 140 (299)
++.+|+++|+|+.+++. .| .+++|+|+.|||+||+|||+.++++|++|+..+++.|++|+++|++||+||+|+.+
T Consensus 2 ~~lIg~~aP~F~~~a~~--~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~f 79 (194)
T COG0450 2 MSLIGKKAPDFTANAVL--GGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVF 79 (194)
T ss_pred ccccCCcCCCcEEEEEe--cCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHH
Confidence 46789999999999763 44 49999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151 141 THLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~ 220 (299)
++.+|.+..++..++++++||+++|++++++++|||..+..|.+.|++|||||+|+|+++.+++...|++.+++++.+++
T Consensus 80 sH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idA 159 (194)
T COG0450 80 SHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDA 159 (194)
T ss_pred HHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHH
Confidence 99999999989998888999999999999999999999888889999999999999999999999999999999999999
Q ss_pred ccCCCCCCccccc
Q psy16151 221 FHDPLRTGAINGL 233 (299)
Q Consensus 221 L~~~~~g~~vn~a 233 (299)
+|....++.+..|
T Consensus 160 lq~~~~hg~vcPa 172 (194)
T COG0450 160 LQFVAKHGEVCPA 172 (194)
T ss_pred HHHHHHhCCCccC
Confidence 9987776776555
No 2
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-33 Score=224.94 Aligned_cols=149 Identities=33% Similarity=0.489 Sum_probs=138.0
Q ss_pred cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151 63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 142 (299)
Q Consensus 63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~ 142 (299)
+.+.+|++||||+|+ +++|+.++|+||+||+|||+|||..++|.|..|+..|++.+++|++.|++|+|||.|+++++
T Consensus 2 ~~l~~G~~aPdF~Lp---~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~ 78 (157)
T COG1225 2 MMLKVGDKAPDFELP---DQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSH 78 (157)
T ss_pred CcCCCCCcCCCeEee---cCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHH
Confidence 468999999999999 77999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCC------CceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHH
Q psy16151 143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG------HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLR 216 (299)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g------~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~ 216 (299)
++|.+++ +++||+|+|++.+++++||+...... ...|++||||++|+|++.+ .......|.+++++
T Consensus 79 ~~F~~k~-------~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~ 150 (157)
T COG1225 79 KKFAEKH-------GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLA 150 (157)
T ss_pred HHHHHHh-------CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccHHHHHH
Confidence 9999987 99999999999999999999876431 3579999999999999999 66777889999999
Q ss_pred HHhhcc
Q psy16151 217 LVQAFH 222 (299)
Q Consensus 217 ~l~~L~ 222 (299)
.++.+.
T Consensus 151 ~l~~l~ 156 (157)
T COG1225 151 ALKKLA 156 (157)
T ss_pred HHHHhc
Confidence 998764
No 3
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=100.00 E-value=5.2e-32 Score=229.81 Aligned_cols=164 Identities=30% Similarity=0.589 Sum_probs=147.2
Q ss_pred cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHH
Q psy16151 65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 144 (299)
Q Consensus 65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~ 144 (299)
+.+|+++|+|+.+...+.+...++|+||+||++||+|||++|||+|+.|++.|++++++|+++|++|++||.|+++.+++
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a 81 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 81 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 56899999999999878888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCC
Q psy16151 145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDP 224 (299)
Q Consensus 145 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~ 224 (299)
|.+..+.. .+++||+++|++++++++||+..+..|.+.|++||||++|+|++++.+....+++.+++++.++++|..
T Consensus 82 ~~~~~~~~---~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq~~ 158 (187)
T PRK10382 82 WHSSSETI---AKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYV 158 (187)
T ss_pred HHHhhccc---cCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhhhH
Confidence 99875321 278999999999999999999765556677999999999999999988888899999999999999986
Q ss_pred CCC-Cccc
Q psy16151 225 LRT-GAIN 231 (299)
Q Consensus 225 ~~g-~~vn 231 (299)
... +.+.
T Consensus 159 ~~~~g~~~ 166 (187)
T PRK10382 159 ASHPGEVC 166 (187)
T ss_pred hhcCCeEe
Confidence 654 4443
No 4
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.98 E-value=1.6e-31 Score=236.37 Aligned_cols=170 Identities=41% Similarity=0.757 Sum_probs=149.2
Q ss_pred cccCCCCCCCCcEEeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151 63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 141 (299)
Q Consensus 63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~ 141 (299)
..+.+|+.+|+|+++++.+++++.++|+++ +||++||+||+++|||+|+.|++.|++++++|+++|++|++||.|+++.
T Consensus 66 ~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~ 145 (261)
T PTZ00137 66 TSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFS 145 (261)
T ss_pred ccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 456899999999998643556678999998 8999999999999999999999999999999999999999999999989
Q ss_pred HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
+++|.+...+..+..+++||+++|++++++++||+... .|.+.|++||||++|+|++.+.++...+++.+++++.++++
T Consensus 146 h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~-~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 146 HKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRD-EGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCc-CCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 99999864444344478999999999999999999753 36678999999999999999988889999999999999999
Q ss_pred cCCCCCCccccc
Q psy16151 222 HDPLRTGAINGL 233 (299)
Q Consensus 222 ~~~~~g~~vn~a 233 (299)
|.....+.+..|
T Consensus 225 q~~~~~g~~cPa 236 (261)
T PTZ00137 225 QFAEKTGNVCPV 236 (261)
T ss_pred chhhhcCCCcCC
Confidence 987776666544
No 5
>PRK15000 peroxidase; Provisional
Probab=99.98 E-value=2.8e-31 Score=228.03 Aligned_cols=186 Identities=40% Similarity=0.705 Sum_probs=153.0
Q ss_pred CCCCCCCCcEEeeeeCCCCce---EEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151 66 LVSKPAPFWQGTAVVDGQLKE---IKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 141 (299)
Q Consensus 66 ~~G~~aPdF~L~~~~~~~G~~---v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~ 141 (299)
.+|+.+|+|+++++ ..+|+. ++|+++ +||++||+||+++|||+|+.|++.|++++++|+++|++||+||+|+++.
T Consensus 3 ~vg~~aPdF~~~~~-~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~ 81 (200)
T PRK15000 3 LVTRQAPDFTAAAV-LGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFV 81 (200)
T ss_pred cCCCcCCCCEeecc-cCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 47999999999865 334554 566666 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
+++|.+..++..++.+++||+++|+++++++.||+.....|...|++||||++|+|++.+.+..+.+++.+++++.++++
T Consensus 82 ~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 82 HNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 99998876555544467999999999999999999876667788999999999999999999999999999999999999
Q ss_pred cCCCCCCccccc--cceeccceechHHHHHHHh
Q psy16151 222 HDPLRTGAINGL--SLLVIGLFQVTEKTCDILE 252 (299)
Q Consensus 222 ~~~~~g~~vn~a--st~~~~~i~~s~~~~~~L~ 252 (299)
+....++.+..| .-|...-...++-+.+.+.
T Consensus 162 ~~~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~~ 194 (200)
T PRK15000 162 QFHEEHGDVCPAQWEKGKEGMNASPDGVAKYLA 194 (200)
T ss_pred hhHHhcCCCcCCCCCCCCceeccCHHHHHHHHH
Confidence 987666666544 2233322333444444443
No 6
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.97 E-value=6e-31 Score=226.58 Aligned_cols=161 Identities=32% Similarity=0.619 Sum_probs=141.9
Q ss_pred cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHH
Q psy16151 65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 144 (299)
Q Consensus 65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~ 144 (299)
+.+|+.+|+|++++ ..| .++|++++||++||+||+++|||+|+.|++.|++++++|+++|++|++||+|+.+.+.+
T Consensus 2 ~~vG~~aP~F~~~~---~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~ 77 (202)
T PRK13190 2 VKLGQKAPDFTVNT---TKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIA 77 (202)
T ss_pred CCCCCCCCCcEEec---CCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 67899999999984 355 69999999999999888899999999999999999999999999999999999999999
Q ss_pred HhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCC
Q psy16151 145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDP 224 (299)
Q Consensus 145 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~ 224 (299)
|.+.+.+..++ .++||+++|++++++++||+.....|...|++||||++|+|+++..++...+++.+++++.+++++..
T Consensus 78 w~~~~~~~~g~-~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~ 156 (202)
T PRK13190 78 WLRDIEERFGI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVN 156 (202)
T ss_pred HHHhHHHhcCC-CceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhH
Confidence 99876544322 46899999999999999999766556678999999999999999988888899999999999999986
Q ss_pred CCCCcc
Q psy16151 225 LRTGAI 230 (299)
Q Consensus 225 ~~g~~v 230 (299)
...+.+
T Consensus 157 ~~~~~~ 162 (202)
T PRK13190 157 WKRKVA 162 (202)
T ss_pred HhcCCC
Confidence 554433
No 7
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.97 E-value=5.8e-31 Score=226.35 Aligned_cols=163 Identities=52% Similarity=0.930 Sum_probs=144.3
Q ss_pred cccCCCCCCCCcEEeee-eCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151 63 CFKLVSKPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 141 (299)
Q Consensus 63 ~~l~~G~~aPdF~L~~~-~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~ 141 (299)
..+.+|+++|+|+++++ .+.+|++++|+||+||++||+||+++||++|+.+++.|++++++|+++|++||+||+|+.+.
T Consensus 4 ~~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~ 83 (199)
T PTZ00253 4 GDAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYA 83 (199)
T ss_pred cccccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHH
Confidence 34678999999998763 25678999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
..+|....+..++.+.++||+++|+++++++.||++....|...|++||||++|+|++.+.+....+++.+++++.++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 84 HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 89997654433334468999999999999999999876667778999999999999999988888999999999999999
Q ss_pred cCCC
Q psy16151 222 HDPL 225 (299)
Q Consensus 222 ~~~~ 225 (299)
+...
T Consensus 164 ~~~~ 167 (199)
T PTZ00253 164 QFVE 167 (199)
T ss_pred hhHH
Confidence 8644
No 8
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.97 E-value=2.1e-30 Score=224.70 Aligned_cols=183 Identities=31% Similarity=0.458 Sum_probs=150.8
Q ss_pred cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHH
Q psy16151 65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 144 (299)
Q Consensus 65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~ 144 (299)
..+|+.+|+|+++ +.+|+...+++++||++||+|++++|||+|+.|++.|++++++|+++|++||+||+|+.+++.+
T Consensus 2 ~~~Gd~aPdF~l~---t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~ 78 (215)
T PRK13599 2 KLLGEKFPSMEVV---TTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIK 78 (215)
T ss_pred CCCCCCCCCCEeE---CCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 3689999999998 5588888889999999988888999999999999999999999999999999999999999999
Q ss_pred HhhcccccCCCCccceeeeecCchHHHHHhCCcccCCC-CceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151 145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG-HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD 223 (299)
Q Consensus 145 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g-~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~ 223 (299)
|.+..++..+ .+++||+++|+++++++.||+.....+ ...|++||||++|+|++++.++...+++.+++++.+++|+.
T Consensus 79 w~~~i~~~~~-~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq~ 157 (215)
T PRK13599 79 WVEWIKDNTN-IAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQT 157 (215)
T ss_pred HHHhHHHhcC-CCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 9886543211 168999999999999999999754333 25799999999999999998888889999999999999987
Q ss_pred CCC---CCccccc-----cceeccceechHHHHHHH
Q psy16151 224 PLR---TGAINGL-----SLLVIGLFQVTEKTCDIL 251 (299)
Q Consensus 224 ~~~---g~~vn~a-----st~~~~~i~~s~~~~~~L 251 (299)
... ..++||. +..+.-...++.+-++..
T Consensus 158 ~~~~~~~~p~~w~~~~~~g~~~~~~~~~~~~~~~~~ 193 (215)
T PRK13599 158 ADQYGVALPEKWPNNYLIKDHVIVPPSTDEASANER 193 (215)
T ss_pred hhhcCCCcCCCCCCCCCCCCcEEEcCCCCHHHHHHh
Confidence 554 3344554 455554445565555444
No 9
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.97 E-value=1.5e-30 Score=225.84 Aligned_cols=163 Identities=33% Similarity=0.586 Sum_probs=141.3
Q ss_pred ccCCCCCCCCcEEeeeeCCCCceEEc-CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151 64 FKLVSKPAPFWQGTAVVDGQLKEIKL-SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 142 (299)
Q Consensus 64 ~l~~G~~aPdF~L~~~~~~~G~~v~L-sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~ 142 (299)
.+.+|+.+|+|+++ +.+|+ +.+ ++++|||+||+||+++|||+|+.|++.|++++++|+++|++|++||+|+.+.+
T Consensus 6 ~~~iG~~aPdF~l~---~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h 81 (215)
T PRK13191 6 IPLIGEKFPEMEVI---TTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISH 81 (215)
T ss_pred cccCCCcCCCCEee---cCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 56789999999998 44676 555 55899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC-CCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ-GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~-g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
.+|.+..++..+. +++||+++|++++++++||+..... +...|++||||++|+|++++.++...+++++++++.++++
T Consensus 82 ~aw~~~~~~~~~~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 82 IEWVMWIEKNLKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHHHhhHHHhcCC-CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9998866543333 6899999999999999999975432 4568999999999999999999999999999999999999
Q ss_pred cCCCCCCccc
Q psy16151 222 HDPLRTGAIN 231 (299)
Q Consensus 222 ~~~~~g~~vn 231 (299)
+.....+.+.
T Consensus 161 q~~~~~~~~~ 170 (215)
T PRK13191 161 QLVDKAGVVT 170 (215)
T ss_pred hhhhhcCCCc
Confidence 9866655443
No 10
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.97 E-value=4.9e-30 Score=215.90 Aligned_cols=164 Identities=63% Similarity=1.059 Sum_probs=141.5
Q ss_pred CCCCCCCcEEeeeeC-CCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHH
Q psy16151 67 VSKPAPFWQGTAVVD-GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 145 (299)
Q Consensus 67 ~G~~aPdF~L~~~~~-~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~ 145 (299)
+|+++|+|++++..+ ++|+.++|++++||++||+||+++|||.|+.+++.|++++++|+++|+.|++||.|+.+...+|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~ 80 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAW 80 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHH
Confidence 599999999986533 3448999999999999999999999999999999999999999999999999999998888889
Q ss_pred hhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCCC
Q psy16151 146 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPL 225 (299)
Q Consensus 146 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~~ 225 (299)
.+...+..+..+++||+++|+++++++.||+.....|...|++||||++|+|++++.+..+.+++.+++++.|+.++.+.
T Consensus 81 ~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~~~ 160 (173)
T cd03015 81 RNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQFVE 160 (173)
T ss_pred HHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhhhh
Confidence 88754321122689999999999999999998766566789999999999999999877777788999999999988777
Q ss_pred CCCcc
Q psy16151 226 RTGAI 230 (299)
Q Consensus 226 ~g~~v 230 (299)
..+.+
T Consensus 161 ~~~~~ 165 (173)
T cd03015 161 EHGEV 165 (173)
T ss_pred hcCCC
Confidence 65555
No 11
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.97 E-value=3.3e-30 Score=219.56 Aligned_cols=163 Identities=36% Similarity=0.674 Sum_probs=140.0
Q ss_pred CCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHH
Q psy16151 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 145 (299)
Q Consensus 66 ~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~ 145 (299)
.+|+.+|+|+++++.++....+++++|+||++||+||+++|||+|+.+++.|++++++|+++|++|++||.|+++.+++|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~ 82 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAW 82 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHH
Confidence 56999999999854333334789999999999999999999999999999999999999999999999999999989999
Q ss_pred hhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCCC
Q psy16151 146 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPL 225 (299)
Q Consensus 146 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~~ 225 (299)
.+..... .+++||+++|+++++++.||+.....|...|++||||++|+|++++......+++.+++++.|++++...
T Consensus 83 ~~~~~~~---~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 159 (187)
T TIGR03137 83 HDTSEAI---GKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAAQYVA 159 (187)
T ss_pred Hhhhhhc---cCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHH
Confidence 8764222 2688999999999999999998665566679999999999999999877777789999999999998866
Q ss_pred CC-Cccc
Q psy16151 226 RT-GAIN 231 (299)
Q Consensus 226 ~g-~~vn 231 (299)
.. +.++
T Consensus 160 ~~~~~~~ 166 (187)
T TIGR03137 160 AHPGEVC 166 (187)
T ss_pred hcCCeee
Confidence 54 3443
No 12
>PRK13189 peroxiredoxin; Provisional
Probab=99.97 E-value=1.7e-29 Score=220.28 Aligned_cols=165 Identities=35% Similarity=0.617 Sum_probs=142.9
Q ss_pred ccCCCCCCCCcEEeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151 64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 142 (299)
Q Consensus 64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~ 142 (299)
++.+|+.+|+|+++++ +|+ ++++++ +|||+||+||+++|||+|+.+++.|++++++|+++|++||+||+|+.+.+
T Consensus 8 ~~~vG~~aPdF~~~~~---~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h 83 (222)
T PRK13189 8 MPLIGDKFPEFEVKTT---HGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSH 83 (222)
T ss_pred cccCCCcCCCcEeEcC---CCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHH
Confidence 5778999999999843 554 788875 99999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC-CCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ-GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~-g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
.+|.+.+++..+. .++||+++|++++++++||+..... +...|++||||++|+|+++..++...+++.+++++.++++
T Consensus 84 ~aw~~~~~~~~g~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 84 IKWVEWIKEKLGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHHHHhHHHhcCc-CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 9999886543322 5799999999999999999975432 3467999999999999999988888999999999999999
Q ss_pred cCCCCCCccccc
Q psy16151 222 HDPLRTGAINGL 233 (299)
Q Consensus 222 ~~~~~g~~vn~a 233 (299)
+.....+.+..|
T Consensus 163 q~~~~~~~~~p~ 174 (222)
T PRK13189 163 QTSDEKGVATPA 174 (222)
T ss_pred hhHhhcCcCcCC
Confidence 987766655444
No 13
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.97 E-value=2.8e-29 Score=216.44 Aligned_cols=178 Identities=29% Similarity=0.429 Sum_probs=145.8
Q ss_pred CCCCCCCcEEeeeeCCCCceEEcCccCC-CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHH
Q psy16151 67 VSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 145 (299)
Q Consensus 67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~G-k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~ 145 (299)
+|+.+|+|++++ .+| .++|++++| |++||+|++++|||+|..+++.|++++++|+++|++|++||+|+.+.+.+|
T Consensus 1 vG~~aP~F~~~~---~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~ 76 (203)
T cd03016 1 LGDTAPNFEADT---THG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKW 76 (203)
T ss_pred CcCCCCCeEEec---CCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHH
Confidence 589999999984 355 589999999 789898888999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCCccceeeeecCchHHHHHhCCcccCC--CCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151 146 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD 223 (299)
Q Consensus 146 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~--g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~ 223 (299)
.+..++..+ .+++||+++|+++.++++||+..... +...|++||||++|+|++++.++...+++.+++++.+++++.
T Consensus 77 ~~~i~~~~~-~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq~ 155 (203)
T cd03016 77 IEDIEEYTG-VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQL 155 (203)
T ss_pred HhhHHHhcC-CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 987655433 37899999999999999999975432 345689999999999999998888889999999999999988
Q ss_pred CCCCCcc----ccccceeccceechHHHHH
Q psy16151 224 PLRTGAI----NGLSLLVIGLFQVTEKTCD 249 (299)
Q Consensus 224 ~~~g~~v----n~ast~~~~~i~~s~~~~~ 249 (299)
....+.+ |.++..+.--..++.+.++
T Consensus 156 ~~~~~~~~p~~w~~g~~~~~~~~~~~~~~~ 185 (203)
T cd03016 156 TDKHKVATPANWKPGDDVIVPPSVSDEEAK 185 (203)
T ss_pred HhhcCcCcCCCCCCCCceecCCCCCHHHHH
Confidence 7543322 2234444433444444443
No 14
>KOG0852|consensus
Probab=99.96 E-value=1.1e-28 Score=199.49 Aligned_cols=170 Identities=69% Similarity=1.121 Sum_probs=162.5
Q ss_pred ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHH
Q psy16151 64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 143 (299)
Q Consensus 64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~ 143 (299)
.+.+..++|+|.-..+.|+.-+.++|+||+||||+++|++..+..+|++|+-.+.+.+++|++.|.+||++|+|+.+.+.
T Consensus 3 ~~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshl 82 (196)
T KOG0852|consen 3 MEVVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHL 82 (196)
T ss_pred ccccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhh
Confidence 35567788999999988999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151 144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD 223 (299)
Q Consensus 144 ~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~ 223 (299)
+|...-++.+|.+.+.+|+++|.+.++++.|||+.+.+|.+.|..||||++|.+|.+..++.+.++.+++.++.+++.|.
T Consensus 83 AW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAfQ~ 162 (196)
T KOG0852|consen 83 AWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAFQF 162 (196)
T ss_pred hHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccc
Q psy16151 224 PLRTGAINGL 233 (299)
Q Consensus 224 ~~~g~~vn~a 233 (299)
....++|..|
T Consensus 163 td~~geVcPa 172 (196)
T KOG0852|consen 163 TDEHGEVCPA 172 (196)
T ss_pred hhccCccccC
Confidence 9998888666
No 15
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.96 E-value=1.6e-27 Score=199.44 Aligned_cols=146 Identities=26% Similarity=0.408 Sum_probs=126.8
Q ss_pred ccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151 62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 141 (299)
Q Consensus 62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~ 141 (299)
...+.+|+++|+|+++ +.+|+.++|++++||++||+||++.|||+|..+++.|+++++++. |++|++||.|+++.
T Consensus 15 ~~~~~~G~~~P~f~l~---~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~ 89 (167)
T PRK00522 15 GSLPQVGDKAPDFTLV---ANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFA 89 (167)
T ss_pred CCCCCCCCCCCCeEEE---cCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHH
Confidence 4467899999999998 668999999999999999999977779999999999999999983 89999999999999
Q ss_pred HHHHhhcccccCCCCccc-eeeeecC-chHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEec-cCCCCCCHHHHH
Q psy16151 142 HLAWVNTPRKEGGLGKLK-IPLLSDL-THKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMN-DLPVGRSVDETL 215 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~-~p~l~D~-~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~-~~~~g~~~~evl 215 (299)
+++|.+.+ +++ +++++|. .+.+++.||+.... .|...|++||||++|+|++.+.. ......+.++++
T Consensus 90 ~~~f~~~~-------~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l 162 (167)
T PRK00522 90 QKRFCGAE-------GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAAL 162 (167)
T ss_pred HHHHHHhC-------CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHH
Confidence 99999886 665 7999995 56999999997554 46677899999999999999973 445667888888
Q ss_pred HHHh
Q psy16151 216 RLVQ 219 (299)
Q Consensus 216 ~~l~ 219 (299)
+.++
T Consensus 163 ~~l~ 166 (167)
T PRK00522 163 AALK 166 (167)
T ss_pred HHhh
Confidence 8775
No 16
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.95 E-value=1.4e-27 Score=195.46 Aligned_cols=145 Identities=36% Similarity=0.580 Sum_probs=128.7
Q ss_pred cCCCCCCCCcEEeeeeCCCCceEEcCccCC-CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHH
Q psy16151 65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 143 (299)
Q Consensus 65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~G-k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~ 143 (299)
+.+|+.+|+|++. +.+|+.+++++++| |++||+||+++|||.|+.+++.|++++++++++|+++++||.|+++.++
T Consensus 1 ~~~G~~~p~~~l~---~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~ 77 (149)
T cd03018 1 LEVGDKAPDFELP---DQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLR 77 (149)
T ss_pred CCCCCcCCCcEec---CCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHH
Confidence 4689999999998 56899999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCCCCccceeeeecCc--hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151 144 AWVNTPRKEGGLGKLKIPLLSDLT--HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ 219 (299)
Q Consensus 144 ~~~~~~~~~~~~~~~~~p~l~D~~--~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~ 219 (299)
+|.+++ +++||+++|.+ +++++.||+.....+.+.|++||||++|+|++.+.+......+..++.+.++
T Consensus 78 ~~~~~~-------~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 148 (149)
T cd03018 78 AWAEEN-------GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEALD 148 (149)
T ss_pred HHHHhc-------CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHhh
Confidence 999876 78999999987 9999999997654455567999999999999999877656667777776664
No 17
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.95 E-value=3e-27 Score=195.06 Aligned_cols=146 Identities=22% Similarity=0.377 Sum_probs=126.4
Q ss_pred cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151 63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 142 (299)
Q Consensus 63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~ 142 (299)
..+++|+.+|+|+++ +.+|+.++|++++||++||+||++.|||.|+.+++.|++++++++++|++||+||.|+++.+
T Consensus 2 ~~~~~g~~~p~f~l~---~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~ 78 (154)
T PRK09437 2 NPLKAGDIAPKFSLP---DQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKL 78 (154)
T ss_pred CcCCCCCcCCCcEee---CCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence 468889999999998 56899999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC--C----CceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHH
Q psy16151 143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G----HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLR 216 (299)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~--g----~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~ 216 (299)
.+|.++. +++||+++|+++.++++||+..... + ...|++||||++|+|++++.+ .....+.+++++
T Consensus 79 ~~~~~~~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g-~~~~~~~~~~~~ 150 (154)
T PRK09437 79 SRFAEKE-------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDK-FKTSNHHDVVLD 150 (154)
T ss_pred HHHHHHh-------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcC-CCcchhHHHHHH
Confidence 9999876 7899999999999999999875431 1 123789999999999999844 344556777777
Q ss_pred HHh
Q psy16151 217 LVQ 219 (299)
Q Consensus 217 ~l~ 219 (299)
.++
T Consensus 151 ~~~ 153 (154)
T PRK09437 151 YLK 153 (154)
T ss_pred HHh
Confidence 664
No 18
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.95 E-value=3.9e-27 Score=191.84 Aligned_cols=139 Identities=29% Similarity=0.461 Sum_probs=120.9
Q ss_pred CCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHH
Q psy16151 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 145 (299)
Q Consensus 66 ~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~ 145 (299)
++|+.+|+|+++ +.+|+.++|++++||++||+||++.|||+|+.+++.|++++++++ |+.||+||+|+.+.+.+|
T Consensus 1 ~~G~~aP~f~l~---~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~ 75 (143)
T cd03014 1 KVGDKAPDFTLV---TSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRW 75 (143)
T ss_pred CCCCCCCCcEEE---CCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHH
Confidence 369999999998 668999999999999999999988889999999999999999984 899999999999999999
Q ss_pred hhcccccCCCCcc-ceeeeecCc-hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEecc-CCCCCCHHHHHH
Q psy16151 146 VNTPRKEGGLGKL-KIPLLSDLT-HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND-LPVGRSVDETLR 216 (299)
Q Consensus 146 ~~~~~~~~~~~~~-~~p~l~D~~-~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~-~~~g~~~~evl~ 216 (299)
.+++ +. .|++++|.. ++++++||++.+..|...|++||||++|+|++.+.+. ....++++++++
T Consensus 76 ~~~~-------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~~~ 142 (143)
T cd03014 76 CGAE-------GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAALA 142 (143)
T ss_pred HHhc-------CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHHhh
Confidence 9876 43 799999996 9999999998665566689999999999999999743 344556666653
No 19
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.95 E-value=5.7e-27 Score=185.71 Aligned_cols=124 Identities=27% Similarity=0.454 Sum_probs=114.7
Q ss_pred CCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHh
Q psy16151 67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV 146 (299)
Q Consensus 67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~ 146 (299)
+|+++|+|+++ +.+|+.++|++++||++||+||+++|||.|..+++.|++++++++++|+.+++|+.|+.+.+++|.
T Consensus 1 vG~~~P~f~l~---~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLT---DSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFL 77 (124)
T ss_dssp TTSBGGCEEEE---TTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHH
T ss_pred CcCCCCCcEeE---CCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhh
Confidence 69999999998 668999999999999999999977799999999999999999999999999999999999999999
Q ss_pred hcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEE
Q psy16151 147 NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQI 200 (299)
Q Consensus 147 ~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~ 200 (299)
+.. +++||++.|+++++++.|++.........|++||||++|+|+++
T Consensus 78 ~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 78 EEY-------GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHH-------TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhh-------ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 987 79999999999999999999755433467999999999999984
No 20
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.94 E-value=5.9e-26 Score=187.62 Aligned_cols=133 Identities=26% Similarity=0.393 Sum_probs=117.2
Q ss_pred CCCCCCCcEEeeeeCCCCceEEcCc-cCCCeEEEEEEeCCCCCCchhh-HHHHHHHHHHHhhcCc-EEEEEeCCCHHhHH
Q psy16151 67 VSKPAPFWQGTAVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINT-EVVAASVDSHFTHL 143 (299)
Q Consensus 67 ~G~~aPdF~L~~~~~~~G~~v~Lsd-~~Gk~vlL~F~~~~~cp~C~~~-~~~l~~l~~~~~~~gv-~vi~Vs~d~~~~~~ 143 (299)
+|+.+|+|+|++..+.+|+.++|++ ++||++||+|||+.|||.|..| ++.|++.+++|++.|+ .|++||.|+++.++
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 5999999999854323589999999 6999999999999999999999 9999999999999999 59999999999999
Q ss_pred HHhhcccccCCCCcc--ceeeeecCchHHHHHhCCcccCC--CC---ceeEEEEEeCCCcEEEEEeccCCC
Q psy16151 144 AWVNTPRKEGGLGKL--KIPLLSDLTHKISLDYGVYLSDQ--GH---TLRGLFIIDRNGVLRQITMNDLPV 207 (299)
Q Consensus 144 ~~~~~~~~~~~~~~~--~~p~l~D~~~~~~~~~gv~~~~~--g~---~~p~~~lID~dG~I~~~~~~~~~~ 207 (299)
+|.+.. ++ +||+++|++++++++||+..... |. ..|++|||| +|+|++++....+.
T Consensus 81 ~~~~~~-------~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~~ 143 (155)
T cd03013 81 AWGKAL-------GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDPG 143 (155)
T ss_pred HHHHhh-------CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCCC
Confidence 999986 55 89999999999999999976543 32 579999999 79999999765543
No 21
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.94 E-value=4.6e-26 Score=186.08 Aligned_cols=133 Identities=24% Similarity=0.369 Sum_probs=113.9
Q ss_pred CCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHH
Q psy16151 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAW 145 (299)
Q Consensus 66 ~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~ 145 (299)
++|+.+|+|++++. +.+|++++|++++||++||+||.+.|||+|..++|.|.+++++++++|+.+++|+.++.....+|
T Consensus 1 k~G~~~P~~~~~~~-~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~ 79 (146)
T PF08534_consen 1 KVGDKAPDFSLKDL-DLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREF 79 (146)
T ss_dssp STTSB--CCEEEEE-ETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHH
T ss_pred CCCCCCCCeEEEee-cCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHH
Confidence 58999999999743 57999999999999999999995549999999999999999999999999999999886668888
Q ss_pred hhcccccCCCCccceeeeecCchHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEeccCC
Q psy16151 146 VNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMNDLP 206 (299)
Q Consensus 146 ~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~~~~ 206 (299)
.++. +.+||++.|++..++++|++.... .|...|++||||++|+|++++.+...
T Consensus 80 ~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 80 LKKY-------GINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHT-------TTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHhh-------CCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 8875 889999999999999999975221 12357999999999999999976554
No 22
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.94 E-value=4.5e-26 Score=184.55 Aligned_cols=136 Identities=32% Similarity=0.431 Sum_probs=119.9
Q ss_pred CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhc
Q psy16151 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT 148 (299)
Q Consensus 69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~ 148 (299)
+++|+|+++ +.+|+.+++++++||++||+||+++|||.|+.+++.|++++++++++|++|++|++|+++...+|.++
T Consensus 1 ~~~p~f~l~---~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 77 (140)
T cd03017 1 DKAPDFTLP---DQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK 77 (140)
T ss_pred CCCCCcccc---CCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 478999998 66899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccccCCCCccceeeeecCchHHHHHhCCcccC---CCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHH
Q psy16151 149 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---QGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETL 215 (299)
Q Consensus 149 ~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~---~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl 215 (299)
+ +++||+++|+++.+++.||+.... .+...|++||||++|+|++++.+. ..++++++++
T Consensus 78 ~-------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~-~~~~~~~~~~ 139 (140)
T cd03017 78 Y-------GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKV-KPKGHAEEVL 139 (140)
T ss_pred h-------CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecC-CccchHHHHh
Confidence 6 789999999999999999997542 123458999999999999998544 4676777665
No 23
>KOG0854|consensus
Probab=99.93 E-value=3.5e-25 Score=179.16 Aligned_cols=191 Identities=24% Similarity=0.398 Sum_probs=166.1
Q ss_pred cccCCCCCCCCcEEeeeeCCCCceEEcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151 63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 141 (299)
Q Consensus 63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~ 141 (299)
..+..|+.+|+|+..+. -..+.+.||.|. |.||+..++.++|+|.+|+..++++..+|.++|++.|++|+|+.++
T Consensus 4 ~~l~lgd~~PNfea~Tt----~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ves 79 (224)
T KOG0854|consen 4 PRLRLGDTVPNFEADTT----VGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVES 79 (224)
T ss_pred CcccccCcCCCcccccc----ccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHH
Confidence 35778999999998633 346999999886 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccCCCC--ccceeeeecCchHHHHHhCCcccCC------CCceeEEEEEeCCCcEEEEEeccCCCCCCHHH
Q psy16151 142 HLAWVNTPRKEGGLG--KLKIPLLSDLTHKISLDYGVYLSDQ------GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDE 213 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~--~~~~p~l~D~~~~~~~~~gv~~~~~------g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~e 213 (299)
++.|.+.++.+.... .++||++.|++.+++-.|++....+ |...|+.||||||-+|+..+.++..+|++.++
T Consensus 80 H~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dE 159 (224)
T KOG0854|consen 80 HKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDE 159 (224)
T ss_pred HHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHH
Confidence 999999985543322 4899999999999999999986642 45679999999999999999999999999999
Q ss_pred HHHHHhhccCCCC---CCcc-ccccceeccceechHHHHHHHhhcCce
Q psy16151 214 TLRLVQAFHDPLR---TGAI-NGLSLLVIGLFQVTEKTCDILEDHGVT 257 (299)
Q Consensus 214 vl~~l~~L~~~~~---g~~v-n~ast~~~~~i~~s~~~~~~L~~~~~~ 257 (299)
+++.++.||.... ..++ |.+.+.++...-|+++-++.|+..||.
T Consensus 160 iLRvidsLqlt~~k~VaTP~nWkpg~~vmilPtV~~eeakklFp~gf~ 207 (224)
T KOG0854|consen 160 ILRVIDSLQLTDKKGVATPVNWKPGDKVMILPTVSDEEAKKLFPKGFN 207 (224)
T ss_pred HHHHHHHHhhhcccccccccccCCCCceEEcCcCChHHHHHhcccccc
Confidence 9999999998876 2333 444888888888999999999998864
No 24
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.92 E-value=2.4e-24 Score=174.24 Aligned_cols=128 Identities=43% Similarity=0.713 Sum_probs=114.2
Q ss_pred CCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcc
Q psy16151 70 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP 149 (299)
Q Consensus 70 ~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 149 (299)
.+|+|++. |.+|+++++++++||++||+||+++||+.|..+++.|++++++|++.++.+++|+.|+++...+|.++.
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 1 KAPDFTLP---ATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCCceec---cCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 47999998 568999999999999999999999999999999999999999998889999999999999899999875
Q ss_pred cccCCCCccceeeeecCchHHHHHhCCcccCC---CCceeEEEEEeCCCcEEEEEeccCC
Q psy16151 150 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ---GHTLRGLFIIDRNGVLRQITMNDLP 206 (299)
Q Consensus 150 ~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~---g~~~p~~~lID~dG~I~~~~~~~~~ 206 (299)
. ..+|++++|+++.+++.||+..... +...|++||||++|+|++++.+...
T Consensus 78 ~------~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 78 G------GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred c------CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 1 5789999999999999999986542 3456899999999999999976554
No 25
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.91 E-value=1.2e-23 Score=176.56 Aligned_cols=154 Identities=20% Similarity=0.160 Sum_probs=126.5
Q ss_pred CCCCCCcEEeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC--------
Q psy16151 68 SKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-------- 138 (299)
Q Consensus 68 G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-------- 138 (299)
|+.+|+|+++ +.+|+.++|+++ +||++||+|| ++|||.|..+++.|.+++++|+++++.+++|+.|+
T Consensus 1 g~~~p~f~l~---~~~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~ 76 (171)
T cd02969 1 GSPAPDFSLP---DTDGKTYSLADFADGKALVVMFI-CNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDS 76 (171)
T ss_pred CCcCCCcccc---CCCCCEEeHHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccC
Confidence 6889999998 668899999999 8999999999 89999999999999999999998899999999875
Q ss_pred HHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCC-----CCCCHHH
Q psy16151 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLP-----VGRSVDE 213 (299)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~-----~g~~~~e 213 (299)
++..++|.+.+ +++||++.|+++.+++.||+. ..|++||||++|+|++....+.. ......+
T Consensus 77 ~~~~~~~~~~~-------~~~~~~l~D~~~~~~~~~~v~------~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 143 (171)
T cd02969 77 PENMKAKAKEH-------GYPFPYLLDETQEVAKAYGAA------CTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD 143 (171)
T ss_pred HHHHHHHHHHC-------CCCceEEECCchHHHHHcCCC------cCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence 45566666654 788999999999999999996 45899999999999988643221 2235677
Q ss_pred HHHHHhhccCCCCCCccccccceec
Q psy16151 214 TLRLVQAFHDPLRTGAINGLSLLVI 238 (299)
Q Consensus 214 vl~~l~~L~~~~~g~~vn~ast~~~ 238 (299)
+.+.|+++........-++++-||.
T Consensus 144 ~~~~i~~~l~~~~~~~~~~~~~~~~ 168 (171)
T cd02969 144 LRAALDALLAGKPVPVPQTPSIGCS 168 (171)
T ss_pred HHHHHHHHHcCCCCCccccCCCCcc
Confidence 8888887766555555566666654
No 26
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.91 E-value=1.1e-23 Score=172.00 Aligned_cols=123 Identities=24% Similarity=0.277 Sum_probs=108.4
Q ss_pred CCCCcEEeeeeCCCCceEEcCccC-CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhc
Q psy16151 70 PAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT 148 (299)
Q Consensus 70 ~aPdF~L~~~~~~~G~~v~Lsd~~-Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~ 148 (299)
.+|+|+++ +.+|+.++++++. +|++||+||+++|||+|+.+++.|++++++++++|+.||+|+.|+.+...+|.+.
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~ 77 (149)
T cd02970 1 TAPDFELP---DAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKG 77 (149)
T ss_pred CCCCcccc---CCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHh
Confidence 47999998 5689999999986 5789999988999999999999999999999999999999999998887778876
Q ss_pred ccccCCCCccceeeeecCchHHHHHhCCcccC-----------------------CCCceeEEEEEeCCCcEEEEEe
Q psy16151 149 PRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD-----------------------QGHTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 149 ~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~-----------------------~g~~~p~~~lID~dG~I~~~~~ 202 (299)
. +++||+++|+++.++++||+.... .+...|++||||++|+|++.+.
T Consensus 78 ~-------~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~ 147 (149)
T cd02970 78 K-------FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHV 147 (149)
T ss_pred c-------CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEec
Confidence 5 789999999999999999996322 1246799999999999999984
No 27
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.89 E-value=2.8e-23 Score=171.09 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=98.0
Q ss_pred CCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--------CHHhH
Q psy16151 71 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHFTH 142 (299)
Q Consensus 71 aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--------~~~~~ 142 (299)
+|+|+++ |.+|++++|++++||+|||+|| ++||| |+.++|.|++++++|+++|+.|++|++| +.+.+
T Consensus 2 ~~~f~l~---d~~G~~v~l~~~~Gk~vvl~fw-atwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~ 76 (152)
T cd00340 2 IYDFSVK---DIDGEPVSLSKYKGKVLLIVNV-ASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEI 76 (152)
T ss_pred cceeEEE---CCCCCEEeHHHhCCCEEEEEEE-cCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHH
Confidence 6899998 6699999999999999999999 99999 9999999999999999999999999874 36778
Q ss_pred HHHhhc-ccccCCCCccceeeeecC--chH-HHHHhCCcccCC-C------CceeEEEEEeCCCcEEEEEecc
Q psy16151 143 LAWVNT-PRKEGGLGKLKIPLLSDL--THK-ISLDYGVYLSDQ-G------HTLRGLFIIDRNGVLRQITMND 204 (299)
Q Consensus 143 ~~~~~~-~~~~~~~~~~~~p~l~D~--~~~-~~~~~gv~~~~~-g------~~~p~~~lID~dG~I~~~~~~~ 204 (299)
++|+++ . +++||++.|. ++. .++.|++..... + ...|++||||++|+|++++.+.
T Consensus 77 ~~f~~~~~-------~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~ 142 (152)
T cd00340 77 KEFCETNY-------GVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPT 142 (152)
T ss_pred HHHHHHhc-------CCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCC
Confidence 899875 4 7899999874 333 455565321100 0 0124899999999999998554
No 28
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.89 E-value=9.2e-23 Score=178.41 Aligned_cols=143 Identities=16% Similarity=0.155 Sum_probs=111.5
Q ss_pred ccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC------
Q psy16151 64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------ 137 (299)
Q Consensus 64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d------ 137 (299)
....|+.+|+|+++ |.+|+.++|++++||++||+|| ++|||+|..++|.|++++++|+++|++||+|+.|
T Consensus 72 ~~~~g~~aPdF~l~---d~~G~~vsLsd~kGK~vvl~Fw-AswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e 147 (236)
T PLN02399 72 RAATEKSVHDFTVK---DIDGKDVALSKFKGKVLLIVNV-ASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQE 147 (236)
T ss_pred chhcCCCCCceEEE---CCCCCEEeHHHhCCCeEEEEEE-cCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccC
Confidence 34579999999998 6689999999999999999999 9999999999999999999999999999999964
Q ss_pred --CHHhHHHHh-hcccccCCCCccceeeeec--Cch-HHHHHhCCcccCC----C---CceeEEEEEeCCCcEEEEEecc
Q psy16151 138 --SHFTHLAWV-NTPRKEGGLGKLKIPLLSD--LTH-KISLDYGVYLSDQ----G---HTLRGLFIIDRNGVLRQITMND 204 (299)
Q Consensus 138 --~~~~~~~~~-~~~~~~~~~~~~~~p~l~D--~~~-~~~~~~gv~~~~~----g---~~~p~~~lID~dG~I~~~~~~~ 204 (299)
+.++..+|+ +++ +++||++.| .++ .++..|++..... | ...|++||||++|+|++++.+.
T Consensus 148 ~~s~~ei~~f~~~~~-------g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~ 220 (236)
T PLN02399 148 PGSNPEIKQFACTRF-------KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPT 220 (236)
T ss_pred CCCHHHHHHHHHHhc-------CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCC
Confidence 456677776 444 789999854 434 4555555321100 1 1248999999999999998543
Q ss_pred CCCCCCHHHHHHHHhhc
Q psy16151 205 LPVGRSVDETLRLVQAF 221 (299)
Q Consensus 205 ~~~g~~~~evl~~l~~L 221 (299)
. +.+++.+.|+.+
T Consensus 221 ~----~~~~le~~I~~l 233 (236)
T PLN02399 221 T----SPFQIEKDIQKL 233 (236)
T ss_pred C----CHHHHHHHHHHH
Confidence 3 445666666655
No 29
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.89 E-value=7.6e-23 Score=175.71 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=108.1
Q ss_pred cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC--------
Q psy16151 65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-------- 136 (299)
Q Consensus 65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~-------- 136 (299)
-..|..+|+|+++ |.+|+.++|++++||+|||+|| ++|||+|..++|.|++++++|+++|++||+|+.
T Consensus 13 ~~~~~~~pdf~l~---d~~G~~vsL~~~kGkvvlv~fw-AswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~ 88 (199)
T PTZ00056 13 DELRKSIYDYTVK---TLEGTTVPMSSLKNKVLMITNS-ASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEF 88 (199)
T ss_pred hhcCCCCCceEEE---CCCCCEEeHHHhCCCEEEEEEE-CCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCC
Confidence 4457899999998 6689999999999999999999 899999999999999999999999999999996
Q ss_pred CCHHhHHHHhhcccccCCCCccceeeeecC------chHHHH--------HhCCcccCCCC-ceeEEEEEeCCCcEEEEE
Q psy16151 137 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDL------THKISL--------DYGVYLSDQGH-TLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~------~~~~~~--------~~gv~~~~~g~-~~p~~~lID~dG~I~~~~ 201 (299)
|+++++++|++++ +++||++.|. ...+.+ .|+......+. ..+++||||++|+|++++
T Consensus 89 d~~e~~~~f~~~~-------~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~ 161 (199)
T PTZ00056 89 PNTKDIRKFNDKN-------KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF 161 (199)
T ss_pred CCHHHHHHHHHHc-------CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence 4677888998876 8899999763 123332 23322111111 124799999999999887
Q ss_pred eccCCCCCCHHHHHHHHhhc
Q psy16151 202 MNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 202 ~~~~~~g~~~~evl~~l~~L 221 (299)
.+.. +.+++.+.|+.+
T Consensus 162 ~g~~----~~~~l~~~I~~l 177 (199)
T PTZ00056 162 SPRT----EPLELEKKIAEL 177 (199)
T ss_pred CCCC----CHHHHHHHHHHH
Confidence 4322 344555555544
No 30
>PLN02412 probable glutathione peroxidase
Probab=99.89 E-value=1e-22 Score=170.40 Aligned_cols=138 Identities=15% Similarity=0.138 Sum_probs=106.6
Q ss_pred CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--------CHH
Q psy16151 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHF 140 (299)
Q Consensus 69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--------~~~ 140 (299)
+.+|+|+++ |.+|+.++|++++||++||+|| ++|||+|..++|.|++++++|+++|+.|++|+.| +.+
T Consensus 7 ~~~pdf~l~---d~~G~~v~l~~~~gk~vlv~f~-a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~ 82 (167)
T PLN02412 7 KSIYDFTVK---DIGGNDVSLNQYKGKVLLIVNV-ASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE 82 (167)
T ss_pred CCCCceEEE---CCCCCEEeHHHhCCCEEEEEEe-CCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence 679999998 6699999999999999999999 9999999999999999999999999999999975 333
Q ss_pred hHHH-HhhcccccCCCCccceeeeec--Cc-hHHHHHhCCcccCC----C---CceeEEEEEeCCCcEEEEEeccCCCCC
Q psy16151 141 THLA-WVNTPRKEGGLGKLKIPLLSD--LT-HKISLDYGVYLSDQ----G---HTLRGLFIIDRNGVLRQITMNDLPVGR 209 (299)
Q Consensus 141 ~~~~-~~~~~~~~~~~~~~~~p~l~D--~~-~~~~~~~gv~~~~~----g---~~~p~~~lID~dG~I~~~~~~~~~~g~ 209 (299)
...+ |.+.+ +++||++.| .+ ...++.|++..... + ...|++||||++|+|++++.+..
T Consensus 83 ~~~~~~~~~~-------~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~---- 151 (167)
T PLN02412 83 EIQQTVCTRF-------KAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTT---- 151 (167)
T ss_pred HHHHHHHHcc-------CCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCC----
Confidence 4333 34554 889999974 55 36666666432211 1 12589999999999999985443
Q ss_pred CHHHHHHHHhhc
Q psy16151 210 SVDETLRLVQAF 221 (299)
Q Consensus 210 ~~~evl~~l~~L 221 (299)
+.+++.+.++.+
T Consensus 152 ~~~~l~~~i~~~ 163 (167)
T PLN02412 152 SPLKIEKDIQNL 163 (167)
T ss_pred CHHHHHHHHHHH
Confidence 344555555544
No 31
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.89 E-value=1.1e-22 Score=162.24 Aligned_cols=107 Identities=17% Similarity=0.228 Sum_probs=96.6
Q ss_pred CCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC------CCHHhHHHHhhcccccCCCC
Q psy16151 83 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV------DSHFTHLAWVNTPRKEGGLG 156 (299)
Q Consensus 83 ~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~------d~~~~~~~~~~~~~~~~~~~ 156 (299)
.|++++|++++||++||+|| ++|||+|..++|.|++++++++++++.|++|+. ++.+..++|.+++
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~-a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~------- 83 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFW-TYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRY------- 83 (126)
T ss_pred CCCccCHHHhCCCEEEEEEE-CCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHc-------
Confidence 35789999999999999999 999999999999999999999999999999986 3467778888776
Q ss_pred ccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 157 KLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 157 ~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
+++||++.|+++.+++.|++. ..|++||||++|+|++++.+
T Consensus 84 ~~~~p~~~D~~~~~~~~~~v~------~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 84 GITYPVANDNDYATWRAYGNQ------YWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CCCCCEEECCchHHHHHhCCC------cCCeEEEECCCCcEEEEEec
Confidence 889999999999999999985 46899999999999999854
No 32
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.88 E-value=1.2e-22 Score=172.48 Aligned_cols=139 Identities=12% Similarity=0.160 Sum_probs=100.3
Q ss_pred CCCCCCcEEeeeeCCCCceEEcCccCCCeEE-EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--------C
Q psy16151 68 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLV-FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------S 138 (299)
Q Consensus 68 G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vl-L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--------~ 138 (299)
+..+|+|+++ +.+|+.++|++|+||++| +++| ++|||+|..++|.|++++++|+++|+.||+||+| +
T Consensus 17 ~~~~p~f~l~---d~~G~~vsLs~~~Gk~vvlv~n~-atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~ 92 (183)
T PTZ00256 17 TKSFFEFEAI---DIDGQLVQLSKFKGKKAIIVVNV-ACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWD 92 (183)
T ss_pred CCcccceEeE---cCCCCEEeHHHhCCCcEEEEEEE-CCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCC
Confidence 6789999998 669999999999999765 4556 9999999999999999999999999999999975 2
Q ss_pred HHhHHHHhh-cccccCCCCccceeeeec--CchHH-HHHhCCcccCC--------C-Ccee---EEEEEeCCCcEEEEEe
Q psy16151 139 HFTHLAWVN-TPRKEGGLGKLKIPLLSD--LTHKI-SLDYGVYLSDQ--------G-HTLR---GLFIIDRNGVLRQITM 202 (299)
Q Consensus 139 ~~~~~~~~~-~~~~~~~~~~~~~p~l~D--~~~~~-~~~~gv~~~~~--------g-~~~p---~~~lID~dG~I~~~~~ 202 (299)
.+...+|.+ .+ +++||++.| .++.. ++.|++..... + ...| ++||||++|+|++++.
T Consensus 93 ~~~~~~f~~~~~-------~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~ 165 (183)
T PTZ00256 93 EPEIKEYVQKKF-------NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFS 165 (183)
T ss_pred HHHHHHHHHHhc-------CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEEC
Confidence 355666654 43 789999965 44332 33442111100 0 1235 5799999999999986
Q ss_pred ccCCCCCCHHHHHHHHhhc
Q psy16151 203 NDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 203 ~~~~~g~~~~evl~~l~~L 221 (299)
+.. +..++.+.|..+
T Consensus 166 g~~----~~~~l~~~I~~l 180 (183)
T PTZ00256 166 PKV----NPNEMIQDIEKL 180 (183)
T ss_pred CCC----CHHHHHHHHHHH
Confidence 433 334455555443
No 33
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.88 E-value=3.5e-22 Score=164.71 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=102.7
Q ss_pred CCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC--------CCHHhHH
Q psy16151 72 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHFTHL 143 (299)
Q Consensus 72 PdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~--------d~~~~~~ 143 (299)
=+|+++ |.+|++++|++|+||++||+|| ++|||+|..++|.|++++++|+++|+.|++|+. |+.+.+.
T Consensus 3 ~~f~l~---~~~G~~~~l~~~~Gk~vvv~~~-as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~ 78 (153)
T TIGR02540 3 YSFEVK---DARGRTVSLEKYRGKVSLVVNV-ASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIE 78 (153)
T ss_pred ccceeE---CCCCCEecHHHhCCCEEEEEEe-CCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHH
Confidence 368877 6799999999999999999999 999999999999999999999999999999985 6678889
Q ss_pred HHhhc-ccccCCCCccceeeeecC-----chHHHHHhCCcccCCCCceeE----EEEEeCCCcEEEEEeccCCCCCCHHH
Q psy16151 144 AWVNT-PRKEGGLGKLKIPLLSDL-----THKISLDYGVYLSDQGHTLRG----LFIIDRNGVLRQITMNDLPVGRSVDE 213 (299)
Q Consensus 144 ~~~~~-~~~~~~~~~~~~p~l~D~-----~~~~~~~~gv~~~~~g~~~p~----~~lID~dG~I~~~~~~~~~~g~~~~e 213 (299)
+|+++ + +++||++.|. +...+..|.+... + ..|+ +||||++|+|++++.+.. +.++
T Consensus 79 ~f~~~~~-------~~~fp~~~d~~~~~~~~~~~~~~~~~~~--~-~~p~~~~~tflID~~G~v~~~~~g~~----~~~~ 144 (153)
T TIGR02540 79 SFARRNY-------GVTFPMFSKIKILGSEAEPAFRFLVDSS--K-KEPRWNFWKYLVNPEGQVVKFWRPEE----PVEE 144 (153)
T ss_pred HHHHHhc-------CCCCCccceEecCCCCCCcHHHHHHhcC--C-CCCCCccEEEEEcCCCcEEEEECCCC----CHHH
Confidence 99974 5 7899999872 2222333433211 1 2355 999999999999985443 4556
Q ss_pred HHHHHhhc
Q psy16151 214 TLRLVQAF 221 (299)
Q Consensus 214 vl~~l~~L 221 (299)
+.+.|+.+
T Consensus 145 l~~~i~~l 152 (153)
T TIGR02540 145 IRPEITAL 152 (153)
T ss_pred HHHHHHHh
Confidence 66666543
No 34
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.88 E-value=1.8e-22 Score=171.73 Aligned_cols=122 Identities=23% Similarity=0.345 Sum_probs=103.3
Q ss_pred cCCCCCCCCcEEeeeeCCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC-CHHhH
Q psy16151 65 KLVSKPAPFWQGTAVVDGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD-SHFTH 142 (299)
Q Consensus 65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d-~~~~~ 142 (299)
..+|+++|+|+++++ +.+|+.++++++ +||++||+|| ++|||+|+.++|.|.+++ ++|++|++|+.| +.+..
T Consensus 39 ~~~g~~~p~f~l~~~-~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 39 ALIGKPVPKFRLESL-ENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQKA 112 (185)
T ss_pred hhcCCCCCCcCCccC-CCCCccccHHHhcCCCEEEEEEE-CCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHHHH
Confidence 567999999999855 334678888776 8999999999 999999999999998774 358999999975 46778
Q ss_pred HHHhhcccccCCCCccceee-eecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccC
Q psy16151 143 LAWVNTPRKEGGLGKLKIPL-LSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDL 205 (299)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~p~-l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~ 205 (299)
.+|.++. +.+||+ +.|+++.+++.||+. ..|++||||++|+|++++.+..
T Consensus 113 ~~~~~~~-------~~~~~~~~~D~~~~~~~~~gv~------~~P~t~vid~~G~i~~~~~G~~ 163 (185)
T PRK15412 113 ISWLKEL-------GNPYALSLFDGDGMLGLDLGVY------GAPETFLIDGNGIIRYRHAGDL 163 (185)
T ss_pred HHHHHHc-------CCCCceEEEcCCccHHHhcCCC------cCCeEEEECCCceEEEEEecCC
Confidence 8899876 788884 789999999999986 4689999999999999986554
No 35
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.87 E-value=3e-21 Score=161.82 Aligned_cols=138 Identities=24% Similarity=0.362 Sum_probs=118.3
Q ss_pred cccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-HHh
Q psy16151 63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-HFT 141 (299)
Q Consensus 63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~~~ 141 (299)
..+.+|+.+|+|++. +.+|+.+++++++||+++|+|| ++||+.|+.+++.|.++++++++.++.+++|+.|+ .+.
T Consensus 33 ~~~~~g~~~p~~~~~---~~~g~~~~l~~~~~k~~~l~f~-a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~ 108 (173)
T PRK03147 33 EKVQVGKEAPNFVLT---DLEGKKIELKDLKGKGVFLNFW-GTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELA 108 (173)
T ss_pred cccCCCCCCCCcEee---cCCCCEEeHHHcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHH
Confidence 468889999999988 5689999999999999999999 99999999999999999999998899999999975 456
Q ss_pred HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
..+|.+.+ +.+||++.|.++.+.+.||+. ..|++|+||++|+|+..+.+.. ..+++.+.++.+
T Consensus 109 ~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~g~i~~~~~g~~----~~~~l~~~l~~~ 171 (173)
T PRK03147 109 VKNFVNRY-------GLTFPVAIDKGRQVIDAYGVG------PLPTTFLIDKDGKVVKVITGEM----TEEQLEEYLEKI 171 (173)
T ss_pred HHHHHHHh-------CCCceEEECCcchHHHHcCCC------CcCeEEEECCCCcEEEEEeCCC----CHHHHHHHHHHh
Confidence 67788765 789999999999999999996 4689999999999998874433 345555555544
No 36
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.87 E-value=1.7e-21 Score=166.23 Aligned_cols=132 Identities=15% Similarity=0.141 Sum_probs=106.8
Q ss_pred ccCCCCCCCCcEEeeeeCCCCceEEcC--ccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151 64 FKLVSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 141 (299)
Q Consensus 64 ~l~~G~~aPdF~L~~~~~~~G~~v~Ls--d~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~ 141 (299)
.+.+|+.+|+|+++ |.+|+.++++ +++||++||+|| ++|||+|+.++|.+.+++++ .++.+++|+.|++++
T Consensus 45 ~~~vG~~aP~f~l~---d~~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~ 117 (189)
T TIGR02661 45 GPDVGDAAPIFNLP---DFDGEPVRIGGSIAPGRPTLLMFT-APSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAE 117 (189)
T ss_pred CCCCCCcCCCcEec---CCCCCEEeccchhcCCCEEEEEEE-CCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHH
Confidence 47899999999998 6689999995 579999999999 99999999999999998754 478899999998999
Q ss_pred HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151 142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV 218 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l 218 (299)
..+|++++ +++++.+. .++++++.|++. ..|++||||++|+|++.. ......+++++++.+
T Consensus 118 ~~~~~~~~-------~~~~~~~~-~~~~i~~~y~v~------~~P~~~lID~~G~I~~~g--~~~~~~~le~ll~~l 178 (189)
T TIGR02661 118 HRRFLKDH-------ELGGERYV-VSAEIGMAFQVG------KIPYGVLLDQDGKIRAKG--LTNTREHLESLLEAD 178 (189)
T ss_pred HHHHHHhc-------CCCcceee-chhHHHHhccCC------ccceEEEECCCCeEEEcc--CCCCHHHHHHHHHHH
Confidence 99999886 66665543 467899999985 468999999999999863 223333455555544
No 37
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.86 E-value=7e-21 Score=154.40 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=102.7
Q ss_pred CCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCC-chhhHHHHHHHHHHHhhcC---cEEEEEeCCC----HHh
Q psy16151 70 PAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV-CPTEILAFNDRLEEFHQIN---TEVVAASVDS----HFT 141 (299)
Q Consensus 70 ~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~-C~~~~~~l~~l~~~~~~~g---v~vi~Vs~d~----~~~ 141 (299)
.+|+|++. +.+|+++++++++||++||+|| ++||+. |..+++.|+++++++++++ +++++||.|+ ++.
T Consensus 1 ~~p~f~l~---~~~g~~~~l~~~~gk~~vl~f~-~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLT---DQDGRPVTLSDLKGKPVLVYFG-YTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEV 76 (142)
T ss_pred CCCceEEE---cCCCCEEchHHhCCCEEEEEEE-cCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHH
Confidence 47999998 6689999999999999999999 789997 9999999999999999865 9999999864 466
Q ss_pred HHHHhhcccccCCCCccceeeeecCc---hHHHHHhCCcccCCC--------CceeEEEEEeCCCcEEEEE
Q psy16151 142 HLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQG--------HTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~p~l~D~~---~~~~~~~gv~~~~~g--------~~~p~~~lID~dG~I~~~~ 201 (299)
+++|.+.+ +.+|+++.|++ ..++++||+...... ...|.+||||++|+|++++
T Consensus 77 ~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 77 LKAYAKAF-------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHHHHHHh-------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 77777775 67899999975 789999998754321 1247899999999999886
No 38
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.85 E-value=4.9e-21 Score=152.72 Aligned_cols=118 Identities=22% Similarity=0.341 Sum_probs=99.3
Q ss_pred CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC-CCHHhHHHHhh
Q psy16151 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV-DSHFTHLAWVN 147 (299)
Q Consensus 69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~-d~~~~~~~~~~ 147 (299)
+++|+|+++++ +++++.+++++++||++||+|| ++|||+|..++|.|.++.+++ +++|++|+. ++.+..++|.+
T Consensus 1 ~~~p~f~~~~~-~g~~~~~~~~~~~gk~vvv~F~-a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 1 KPAPAFSLPAL-PGPDKTLTSADLKGKPYLLNVW-ASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred CCCCCcccccc-cCCCccccHHHcCCCEEEEEEE-cCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHH
Confidence 36899999854 2223889999999999999999 999999999999999987764 599999997 45777788887
Q ss_pred cccccCCCCcccee-eeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151 148 TPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND 204 (299)
Q Consensus 148 ~~~~~~~~~~~~~p-~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~ 204 (299)
.. +.+|+ ++.|.++.+++.|++. ..|++|+||++|+|++++.+.
T Consensus 76 ~~-------~~~~~~~~~D~~~~~~~~~~v~------~~P~~~~ld~~G~v~~~~~G~ 120 (127)
T cd03010 76 RH-------GNPYAAVGFDPDGRVGIDLGVY------GVPETFLIDGDGIIRYKHVGP 120 (127)
T ss_pred hc-------CCCCceEEECCcchHHHhcCCC------CCCeEEEECCCceEEEEEecc
Confidence 75 66775 6689999999999996 469999999999999998554
No 39
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.85 E-value=1.2e-20 Score=147.37 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=95.2
Q ss_pred CCcEEeeeeCCCCceEEcCccC-CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhccc
Q psy16151 72 PFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPR 150 (299)
Q Consensus 72 PdF~L~~~~~~~G~~v~Lsd~~-Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~ 150 (299)
|+|+++ +.+|+.++|++++ ||++||+|| ++||++|+.++|.+.++++++.+ ++.+++++.++.+...+|.+++
T Consensus 1 p~f~l~---~~~G~~~~l~~~~~gk~vvl~F~-~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~- 74 (114)
T cd02967 1 PTFDLT---TIDGAPVRIGGISPGRPTLLFFL-SPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKH- 74 (114)
T ss_pred CCceee---cCCCCEEEcccccCCCeEEEEEE-CCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHh-
Confidence 789987 5689999999998 999999999 99999999999999999888754 6888988877788888888876
Q ss_pred ccCCCCcc-ceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 151 KEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 151 ~~~~~~~~-~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
++ .||++.+ .++++.|++. ..|++||||++|+|++..
T Consensus 75 ------~~~~~p~~~~--~~~~~~~~~~------~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 75 ------GLEAFPYVLS--AELGMAYQVS------KLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred ------CCCCCcEEec--HHHHhhcCCC------CcCeEEEECCCCeEEecc
Confidence 55 4888874 5688999985 469999999999999875
No 40
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.85 E-value=7.9e-21 Score=159.85 Aligned_cols=132 Identities=20% Similarity=0.243 Sum_probs=104.5
Q ss_pred ccCCCCCCCCcEEeeeeCCCCc--eEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-H
Q psy16151 64 FKLVSKPAPFWQGTAVVDGQLK--EIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-H 139 (299)
Q Consensus 64 ~l~~G~~aPdF~L~~~~~~~G~--~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-~ 139 (299)
...+|+++|+|++++ .+|+ .++++++ +||+++|+|| ++|||+|+.++|.+.++++ +|++|++|+.++ .
T Consensus 33 ~~~vG~~ap~f~l~~---~~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~~~ 104 (173)
T TIGR00385 33 SALIGKPVPAFPLAA---LREPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRAEHPYLNELAK----DGLPIVGVDYKDQS 104 (173)
T ss_pred chhcCCCCCCccccc---cCCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHHHHHHHHHHHH----cCCEEEEEECCCCh
Confidence 356799999999984 4555 6666776 7999999999 9999999999999887753 589999999864 5
Q ss_pred HhHHHHhhcccccCCCCcccee-eeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151 140 FTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV 218 (299)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l 218 (299)
++..+|.+++ +++|| ++.|+++++++.|++. ..|++|+||++|+|++++.+.. +.+++.+.+
T Consensus 105 ~~~~~~~~~~-------~~~f~~v~~D~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~----~~~~l~~~l 167 (173)
T TIGR00385 105 QNALKFLKEL-------GNPYQAILIDPNGKLGLDLGVY------GAPETFLVDGNGVILYRHAGPL----NNEVWTEGF 167 (173)
T ss_pred HHHHHHHHHc-------CCCCceEEECCCCchHHhcCCe------eCCeEEEEcCCceEEEEEeccC----CHHHHHHHH
Confidence 5566788765 77887 5689999999999986 4689999999999999985433 344555544
Q ss_pred hh
Q psy16151 219 QA 220 (299)
Q Consensus 219 ~~ 220 (299)
++
T Consensus 168 ~~ 169 (173)
T TIGR00385 168 LP 169 (173)
T ss_pred HH
Confidence 43
No 41
>KOG0855|consensus
Probab=99.85 E-value=1.1e-20 Score=151.96 Aligned_cols=147 Identities=29% Similarity=0.389 Sum_probs=130.6
Q ss_pred cccCCCCCCCCcEEeeeeCCCCceEEcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151 63 CFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 141 (299)
Q Consensus 63 ~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~ 141 (299)
..+.+|+.+|||+|+ |+||+.++|.++.|+ +||++||++.-+|.|..+...+++-|++|++.+.+|+|+|.|+...
T Consensus 61 ~~v~~Gd~iPD~tL~---dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~s 137 (211)
T KOG0855|consen 61 LKVNKGDAIPDFTLK---DEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSAS 137 (211)
T ss_pred eeeecCCcCCCcccc---cCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHH
Confidence 368899999999998 889999999999986 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC-CCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151 142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ-GHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ 219 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~-g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~ 219 (299)
+++|.... +++|.+|+|+.+++.+.+|+..+.. |.+.|..||+|+.|....+......+..++++.++.+.
T Consensus 138 qKaF~sKq-------nlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k~~~ 209 (211)
T KOG0855|consen 138 QKAFASKQ-------NLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALKFLK 209 (211)
T ss_pred HHHhhhhc-------cCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHHHHh
Confidence 99999876 8999999999999999999988654 45789999999888777666566666667777776654
No 42
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.83 E-value=3.4e-20 Score=150.82 Aligned_cols=103 Identities=13% Similarity=0.208 Sum_probs=84.9
Q ss_pred ceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc-------CcEEEEEeCCC-HHhHHHHhhcccccCCCC
Q psy16151 85 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-------NTEVVAASVDS-HFTHLAWVNTPRKEGGLG 156 (299)
Q Consensus 85 ~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~-------gv~vi~Vs~d~-~~~~~~~~~~~~~~~~~~ 156 (299)
..++|++|+||+|+|+|| |+|||+|+.++|.|.+++++++++ +++||+||.|. .+...+|.++.
T Consensus 16 ~~~~ls~~kgk~vlL~Fw-AsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~------- 87 (146)
T cd03008 16 EREIVARLENRVLLLFFG-AVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM------- 87 (146)
T ss_pred ccccHHHhCCCEEEEEEE-CCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC-------
Confidence 357899999999999999 999999999999999999988754 69999999985 44466777765
Q ss_pred ccce---eeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 157 KLKI---PLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 157 ~~~~---p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
++.| |+..+....+++.|++. ..|++||||++|+|+...
T Consensus 88 ~~~~~~~p~~~~~~~~l~~~y~v~------~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 88 PKKWLFLPFEDEFRRELEAQFSVE------ELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred CCCceeecccchHHHHHHHHcCCC------CCCEEEEECCCCcEEeeC
Confidence 5555 33333346899999986 579999999999999774
No 43
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.81 E-value=5.5e-19 Score=169.84 Aligned_cols=132 Identities=14% Similarity=0.250 Sum_probs=109.5
Q ss_pred cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC------C
Q psy16151 65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD------S 138 (299)
Q Consensus 65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d------~ 138 (299)
+..++++|+|++. |.+|+.++++ +||+|||+|| ++||++|+.++|.|.+++++++..++.||+|+.+ +
T Consensus 32 ~~~~~~lP~f~l~---D~dG~~v~ls--kGKpVvV~FW-ATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~ 105 (521)
T PRK14018 32 ATVPHTLSTLKTA---DNRPASVYLK--KDKPTLIKFW-ASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKK 105 (521)
T ss_pred ccccCCCCCeEee---cCCCceeecc--CCCEEEEEEE-cCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccccccc
Confidence 6678899999987 7799999998 9999999999 9999999999999999999998889999999863 2
Q ss_pred HHhHHHHhhcccccCCCCcc-ceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHH
Q psy16151 139 HFTHLAWVNTPRKEGGLGKL-KIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRL 217 (299)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~-~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~ 217 (299)
.++..+|.+.. ++ .||++.|.++++++.|++. ..|++||||++|+|+....+.. ..+++.+.
T Consensus 106 ~~~~~~~~~~~-------~y~~~pV~~D~~~~lak~fgV~------giPTt~IIDkdGkIV~~~~G~~----~~eeL~a~ 168 (521)
T PRK14018 106 DGDFQKWYAGL-------DYPKLPVLTDNGGTLAQSLNIS------VYPSWAIIGKDGDVQRIVKGSI----SEAQALAL 168 (521)
T ss_pred HHHHHHHHHhC-------CCcccceeccccHHHHHHcCCC------CcCeEEEEcCCCeEEEEEeCCC----CHHHHHHH
Confidence 34455666543 33 6899999999999999996 5799999999999999986543 34455554
Q ss_pred Hh
Q psy16151 218 VQ 219 (299)
Q Consensus 218 l~ 219 (299)
++
T Consensus 169 Ie 170 (521)
T PRK14018 169 IR 170 (521)
T ss_pred HH
Confidence 44
No 44
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.80 E-value=2e-19 Score=151.27 Aligned_cols=147 Identities=13% Similarity=0.126 Sum_probs=109.9
Q ss_pred ccccccCCCCCCCCcEEeee-------eCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEE-
Q psy16151 60 YFICFKLVSKPAPFWQGTAV-------VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV- 131 (299)
Q Consensus 60 ~~~~~l~~G~~aPdF~L~~~-------~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~v- 131 (299)
+..+.+.+|+++|..++.+- .+-+.++++.++++||+.||+|| |+||++|+.+.|.|.++ +++|+.+
T Consensus 18 ~~a~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~-Aswc~~c~~e~P~l~~l----~~~~~~~~ 92 (184)
T TIGR01626 18 AWAHNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHI-AGRTSAKEXNASLIDAI----KAAKFPPV 92 (184)
T ss_pred HhhhhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEE-ecCCChhhccchHHHHH----HHcCCCcc
Confidence 34567899999999876521 01234678889999999999999 99999999999999988 5668999
Q ss_pred -----EEEeCCC-HHhHHHHhhcccccCCCCcccee---eeecCchHHHHHhCCcccCCCCceeEE-EEEeCCCcEEEEE
Q psy16151 132 -----VAASVDS-HFTHLAWVNTPRKEGGLGKLKIP---LLSDLTHKISLDYGVYLSDQGHTLRGL-FIIDRNGVLRQIT 201 (299)
Q Consensus 132 -----i~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~p---~l~D~~~~~~~~~gv~~~~~g~~~p~~-~lID~dG~I~~~~ 201 (299)
++|+.|+ ......|.+.+.+.. ...|| ++.|+++.++..||+. ..|++ ||||++|+|++++
T Consensus 93 ~y~~t~~IN~dd~~~~~~~fVk~fie~~---~~~~P~~~vllD~~g~v~~~~gv~------~~P~T~fVIDk~GkVv~~~ 163 (184)
T TIGR01626 93 KYQTTTIINADDAIVGTGMFVKSSAKKG---KKENPWSQVVLDDKGAVKNAWQLN------SEDSAIIVLDKTGKVKFVK 163 (184)
T ss_pred cccceEEEECccchhhHHHHHHHHHHHh---cccCCcceEEECCcchHHHhcCCC------CCCceEEEECCCCcEEEEE
Confidence 9999986 334445555432222 45666 9999999999999996 45676 9999999999999
Q ss_pred eccCCCCCCHHHHHHHHhhc
Q psy16151 202 MNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 202 ~~~~~~g~~~~evl~~l~~L 221 (299)
.+... ....++++..++.+
T Consensus 164 ~G~l~-~ee~e~~~~li~~l 182 (184)
T TIGR01626 164 EGALS-DSDIQTVISLVNGL 182 (184)
T ss_pred eCCCC-HHHHHHHHHHHHHH
Confidence 66542 22345566666554
No 45
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.79 E-value=1.2e-18 Score=134.33 Aligned_cols=112 Identities=27% Similarity=0.397 Sum_probs=100.8
Q ss_pred CcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC--HHhHHHHhhccc
Q psy16151 73 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--HFTHLAWVNTPR 150 (299)
Q Consensus 73 dF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~--~~~~~~~~~~~~ 150 (299)
+|++. +.+|+.+++++++||+++|+|| ++||+.|...++.|.++.+++++.++.+++|+.|+ ++..++|.+.+
T Consensus 1 ~~~~~---~~~g~~~~~~~~~~k~~ll~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~- 75 (116)
T cd02966 1 DFSLP---DLDGKPVSLSDLKGKVVLVNFW-ASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY- 75 (116)
T ss_pred Ccccc---CCCCCEeehHHcCCCEEEEEee-cccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc-
Confidence 35655 5688999999999999999999 88999999999999999999987789999999998 78888888776
Q ss_pred ccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 151 KEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 151 ~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
+.+|+++.|....+.+.|++. ..|+++|+|++|+|++.+
T Consensus 76 ------~~~~~~~~~~~~~~~~~~~~~------~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 76 ------GITFPVLLDPDGELAKAYGVR------GLPTTFLIDRDGRIRARH 114 (116)
T ss_pred ------CCCcceEEcCcchHHHhcCcC------ccceEEEECCCCcEEEEe
Confidence 689999999989999999986 468999999999999876
No 46
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.79 E-value=5.5e-19 Score=184.23 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=107.5
Q ss_pred ccccCCCCCCCCcEEeeeeCCCCceEEc-CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC---C
Q psy16151 62 ICFKLVSKPAPFWQGTAVVDGQLKEIKL-SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV---D 137 (299)
Q Consensus 62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~L-sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~---d 137 (299)
......|.++|+|..+.. +.+|+++++ ++++||+|||+|| ++||++|+.++|.|++++++|+++++.||+|+. |
T Consensus 388 ~~~~~~g~~~p~f~~~~~-~~~g~~~~l~~~lkGK~vll~FW-AsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D 465 (1057)
T PLN02919 388 LESKKTATKVPEFPPKLD-WLNTAPLQFRRDLKGKVVILDFW-TYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFD 465 (1057)
T ss_pred hhccccCCcCCCCccccc-ccCCccccchhhcCCCEEEEEEE-CCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccc
Confidence 345667999999998742 357899998 6899999999999 999999999999999999999998999999974 3
Q ss_pred CHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 138 SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
..++..+|.+...++ ++.||++.|.+..+++.|++. ..|++||||++|+|+++..+
T Consensus 466 ~~~~~~~~~~~~~~~----~i~~pvv~D~~~~~~~~~~V~------~iPt~ilid~~G~iv~~~~G 521 (1057)
T PLN02919 466 NEKDLEAIRNAVLRY----NISHPVVNDGDMYLWRELGVS------SWPTFAVVSPNGKLIAQLSG 521 (1057)
T ss_pred ccccHHHHHHHHHHh----CCCccEEECCchHHHHhcCCC------ccceEEEECCCCeEEEEEec
Confidence 323333343333333 889999999999999999986 57999999999999998744
No 47
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.77 E-value=1.1e-18 Score=139.82 Aligned_cols=110 Identities=15% Similarity=0.169 Sum_probs=86.0
Q ss_pred CCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc--CcEEEEEeCCCHHhHHHHhhcccccCCCCcc
Q psy16151 81 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDSHFTHLAWVNTPRKEGGLGKL 158 (299)
Q Consensus 81 ~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~ 158 (299)
+.+|+.++|++++||++||+|| ++||++|+.++|.|++++++++++ +++|++|+.|... .+|.+.+.+. +...+
T Consensus 5 ~~~G~~v~l~~~~gk~vll~Fw-a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~--~~~~~~~~~~-~~~~~ 80 (131)
T cd03009 5 RNDGGKVPVSSLEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDE--ESFNDYFSKM-PWLAV 80 (131)
T ss_pred ccCCCCccHHHhCCcEEEEEEE-CCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCH--HHHHHHHHcC-CeeEc
Confidence 6799999999999999999999 899999999999999999999865 7999999998643 2333333221 10123
Q ss_pred ceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 159 KIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 159 ~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
+|+. .|....+++.||+. ..|+++|||++|+|+...
T Consensus 81 ~~~~-~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 81 PFSD-RERRSRLNRTFKIE------GIPTLIILDADGEVVTTD 116 (131)
T ss_pred ccCC-HHHHHHHHHHcCCC------CCCEEEEECCCCCEEccc
Confidence 3332 34557899999996 469999999999999775
No 48
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.77 E-value=6.8e-18 Score=142.67 Aligned_cols=139 Identities=12% Similarity=0.067 Sum_probs=100.3
Q ss_pred CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC--------CCHH
Q psy16151 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--------DSHF 140 (299)
Q Consensus 69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~--------d~~~ 140 (299)
+.+++|++. +.+|+.++|++|+||+|||+|| ++||+.|. +++.|++++++|+++|++|++|+. ++.+
T Consensus 3 ~~~~~f~~~---~~~G~~v~Ls~~~GKvvLVvf~-AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ 77 (183)
T PRK10606 3 DSILTTVVT---TIDGEVTTLEKYAGNVLLIVNV-ASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE 77 (183)
T ss_pred CCccCcEeE---CCCCCEEeHHHhCCCEEEEEEE-eCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH
Confidence 357899987 6689999999999999999999 99999885 899999999999999999999987 4667
Q ss_pred hHHHHhh-cccccCCCCccceeeeec--Cch----HHHHHhCCcccC------CC---------------Cce---eEEE
Q psy16151 141 THLAWVN-TPRKEGGLGKLKIPLLSD--LTH----KISLDYGVYLSD------QG---------------HTL---RGLF 189 (299)
Q Consensus 141 ~~~~~~~-~~~~~~~~~~~~~p~l~D--~~~----~~~~~~gv~~~~------~g---------------~~~---p~~~ 189 (299)
++.+|++ .+ +++||++.+ .++ .+.+-+.-.... .+ ... =+.|
T Consensus 78 ei~~f~~~~~-------g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KF 150 (183)
T PRK10606 78 EIKTYCRTTW-------GVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKF 150 (183)
T ss_pred HHHHHHHHcc-------CCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEE
Confidence 7888886 44 889999944 332 233333110000 00 000 1389
Q ss_pred EEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 190 IIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 190 lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
|||++|+++.++.. ...+....+.+.|+.+
T Consensus 151 Lv~~~G~vv~r~~~--~~~p~~~~i~~~i~~~ 180 (183)
T PRK10606 151 LVGRDGQVIQRFSP--DMTPEDPIVMESIKLA 180 (183)
T ss_pred EECCCCcEEEEECC--CCCCCHHHHHHHHHHH
Confidence 99999999999832 2333334455555543
No 49
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.77 E-value=4e-18 Score=134.86 Aligned_cols=108 Identities=20% Similarity=0.343 Sum_probs=95.1
Q ss_pred CCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC--HHhHHHHhhcc
Q psy16151 72 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS--HFTHLAWVNTP 149 (299)
Q Consensus 72 PdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~--~~~~~~~~~~~ 149 (299)
|+|++. +.+|+.+++++++||++||+|| ++||++|+.++|.|.+++++ +.+++|+.|+ ++.+.+|.+++
T Consensus 1 p~f~l~---~~~g~~~~~~~~~~k~~vl~F~-~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~ 71 (123)
T cd03011 1 PLFTAT---TLDGEQFDLESLSGKPVLVYFW-ATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK 71 (123)
T ss_pred CCceee---cCCCCEeeHHHhCCCEEEEEEE-CCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc
Confidence 789987 6688999999999999999999 99999999999999999866 6788888764 67778888776
Q ss_pred cccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151 150 RKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 150 ~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~ 202 (299)
+++||++.|++.++.+.|++. ..|+++|||++| |++++.
T Consensus 72 -------~~~~~~~~d~~~~~~~~~~i~------~~P~~~vid~~g-i~~~~~ 110 (123)
T cd03011 72 -------GYGFPVINDPDGVISARWGVS------VTPAIVIVDPGG-IVFVTT 110 (123)
T ss_pred -------CCCccEEECCCcHHHHhCCCC------cccEEEEEcCCC-eEEEEe
Confidence 789999999999999999986 569999999999 888874
No 50
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.77 E-value=2.8e-18 Score=137.88 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=86.4
Q ss_pred CCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc--CcEEEEEeCCC-HHhHHHHhhcccccCCCCc
Q psy16151 81 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS-HFTHLAWVNTPRKEGGLGK 157 (299)
Q Consensus 81 ~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d~-~~~~~~~~~~~~~~~~~~~ 157 (299)
|++ +++++++++||++||+|| ++||++|+.++|.|++++++++++ +++|++|+.|. .++..+|.+++ +
T Consensus 5 ~~~-~~v~l~~~~Gk~vll~F~-atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~-------~ 75 (132)
T cd02964 5 DGE-GVVPVSALEGKTVGLYFS-ASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEM-------P 75 (132)
T ss_pred cCC-ccccHHHhCCCEEEEEEE-CCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcC-------C
Confidence 444 699999999999999999 999999999999999999999875 79999999986 45677787765 3
Q ss_pred cceeee--ec--CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 158 LKIPLL--SD--LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 158 ~~~p~l--~D--~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
.|+.+ .| ....+++.|++. ..|+++|||++|+|+...
T Consensus 76 -~~~~~~~~d~~~~~~~~~~~~v~------~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 76 -PWLAVPFEDEELRELLEKQFKVE------GIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred -CeEeeccCcHHHHHHHHHHcCCC------CCCEEEEECCCCCEEchh
Confidence 33333 23 235788889986 569999999999999775
No 51
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.73 E-value=2.9e-17 Score=137.51 Aligned_cols=120 Identities=8% Similarity=0.109 Sum_probs=92.9
Q ss_pred cCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHH
Q psy16151 65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 144 (299)
Q Consensus 65 l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~ 144 (299)
+.+....|+|++. +|+.++++||+ ||+|| ++|||+|..++|.|+++++++ |++|++|+.|...
T Consensus 49 ~~~~~~~~~f~l~-----dG~~v~lsd~~----lV~Fw-aswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~---- 111 (181)
T PRK13728 49 RTEKPAPRWFRLS-----NGRQVNLADWK----VVLFM-QGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG---- 111 (181)
T ss_pred ccCCCCCCccCCC-----CCCEeehhHce----EEEEE-CCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC----
Confidence 4456678899975 88999999998 77788 999999999999999999887 6999999987431
Q ss_pred HhhcccccCCCCccceeeeec-CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEE-EEeccCCCCCCHHHHHHHHhhc
Q psy16151 145 WVNTPRKEGGLGKLKIPLLSD-LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQ-ITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 145 ~~~~~~~~~~~~~~~~p~l~D-~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~-~~~~~~~~g~~~~evl~~l~~L 221 (299)
...||++.| ..+.+.+.||+.. ...|++||||++|++++ ++.+.. +.+++.+.++.+
T Consensus 112 ------------~~~fPv~~dd~~~~~~~~~g~~~----~~iPttfLId~~G~i~~~~~~G~~----~~~~L~~~I~~l 170 (181)
T PRK13728 112 ------------DTAFPEALPAPPDVMQTFFPNIP----VATPTTFLVNVNTLEALPLLQGAT----DAAGFMARMDTV 170 (181)
T ss_pred ------------CCCCceEecCchhHHHHHhCCCC----CCCCeEEEEeCCCcEEEEEEECCC----CHHHHHHHHHHH
Confidence 357999985 5677888999521 15799999999999975 554433 344555555444
No 52
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.6e-16 Score=123.33 Aligned_cols=131 Identities=26% Similarity=0.407 Sum_probs=114.9
Q ss_pred ccccccCCCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151 60 YFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 139 (299)
Q Consensus 60 ~~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~ 139 (299)
.....+++|+++|+|++. +.+.+.++|+|+.||..||..+|+-.+|+|..+...+++...++. ++.|+.||.|-|
T Consensus 13 l~g~~~~vGd~ap~ftl~---~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLP 87 (158)
T COG2077 13 LKGNEPQVGDKAPDFTLV---GKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLP 87 (158)
T ss_pred ecCCCCccCCcCCceEEE---cCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCCh
Confidence 345579999999999987 668899999999999999999999999999999999999888776 589999999999
Q ss_pred HhHHHHhhcccccCCCCccc-eeeeecC-chHHHHHhCCcccCC---CCceeEEEEEeCCCcEEEEEe
Q psy16151 140 FTHLAWVNTPRKEGGLGKLK-IPLLSDL-THKISLDYGVYLSDQ---GHTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~-~p~l~D~-~~~~~~~~gv~~~~~---g~~~p~~~lID~dG~I~~~~~ 202 (299)
+.+.+|+.+. ++. ...++|- +..+.+.||+....- |...|+.|++|.+|+|+|..+
T Consensus 88 FAq~RfC~ae-------Gi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~el 148 (158)
T COG2077 88 FAQKRFCGAE-------GIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSEL 148 (158)
T ss_pred hHHhhhhhhc-------CcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEc
Confidence 9999999986 554 6778885 477999999986653 677899999999999999875
No 53
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.66 E-value=3.9e-16 Score=131.36 Aligned_cols=126 Identities=22% Similarity=0.329 Sum_probs=96.8
Q ss_pred CCCCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc--CcEEEEEeCCC----HH
Q psy16151 67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS----HF 140 (299)
Q Consensus 67 ~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d~----~~ 140 (299)
.....|+|+|. |++|+++++++++||++||+|+++.|...|+..+..|.++++++.+. .++++.||+|+ ++
T Consensus 28 ~~~~~~~f~L~---d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~ 104 (174)
T PF02630_consen 28 NPRIVPDFTLT---DQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPE 104 (174)
T ss_dssp TSCSSST-EEE---ETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HH
T ss_pred CCccCCCcEEE---cCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHH
Confidence 45667899987 88999999999999999999999998889999999999999999864 68999999986 56
Q ss_pred hHHHHhhcccccCCCCccceeeee---cCchHHHHHhCCcccCC------C----CceeEEEEEeCCCcEEEEEe
Q psy16151 141 THLAWVNTPRKEGGLGKLKIPLLS---DLTHKISLDYGVYLSDQ------G----HTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~p~l~---D~~~~~~~~~gv~~~~~------g----~~~p~~~lID~dG~I~~~~~ 202 (299)
.+++|.+.+ +..|..+. +.-.++++.|++..... + .+...+|||||+|+|+..+.
T Consensus 105 ~L~~Y~~~~-------~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 105 VLKKYAKKF-------GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHCH-------TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHhc-------CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 677777765 33443332 33377899999875421 1 12356899999999998873
No 54
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.66 E-value=4.3e-16 Score=117.64 Aligned_cols=91 Identities=19% Similarity=0.429 Sum_probs=70.5
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh-hcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeee---cCchH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLS---DLTHK 169 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~-~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~---D~~~~ 169 (299)
||+++|+|| ++||++|..++|.|.+++++++ +.++++|+||.|.. ..+|.+..++. +.+|+.+. +....
T Consensus 1 gK~~ll~fw-a~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 73 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDED--EEEWKKFLKKN----NFPWYNVPFDDDNNSE 73 (95)
T ss_dssp TSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSS--HHHHHHHHHTC----TTSSEEEETTTHHHHH
T ss_pred CCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCC--HHHHHHHHHhc----CCCceEEeeCcchHHH
Confidence 799999999 9999999999999999999999 67899999999853 33444444333 34554443 33578
Q ss_pred HHHHhCCcccCCCCceeEEEEEeCCCcE
Q psy16151 170 ISLDYGVYLSDQGHTLRGLFIIDRNGVL 197 (299)
Q Consensus 170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I 197 (299)
+.+.|++. ..|+++|+|++|+|
T Consensus 74 l~~~~~i~------~iP~~~lld~~G~I 95 (95)
T PF13905_consen 74 LLKKYGIN------GIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHTT-T------SSSEEEEEETTSBE
T ss_pred HHHHCCCC------cCCEEEEECCCCCC
Confidence 99999996 57999999999997
No 55
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.59 E-value=1.8e-14 Score=124.30 Aligned_cols=140 Identities=20% Similarity=0.232 Sum_probs=107.9
Q ss_pred CcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh---hcCcEEEEEeCCCHHhHHHHhhcc
Q psy16151 73 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH---QINTEVVAASVDSHFTHLAWVNTP 149 (299)
Q Consensus 73 dF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~---~~gv~vi~Vs~d~~~~~~~~~~~~ 149 (299)
+|+|. |++|+.+++.+++||++||+|.++.|..+|+.++..|.++.+++. ..+++++.||+|+..+..+.++++
T Consensus 49 ~f~l~---d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 49 DFELT---DQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred ceeee---cCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence 79987 889999999999999999999999988999999999999999998 456889999998865555555555
Q ss_pred cc-cCCCCccceeeeecC---chHHHHHhCCcccC---CC------CceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHH
Q psy16151 150 RK-EGGLGKLKIPLLSDL---THKISLDYGVYLSD---QG------HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLR 216 (299)
Q Consensus 150 ~~-~~~~~~~~~p~l~D~---~~~~~~~~gv~~~~---~g------~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~ 216 (299)
-+ ++ ...|..+... ..+++++|++.... .+ .+....||||++|+++....+.. ..+++++
T Consensus 126 ~~~~~---~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~----~~~~i~~ 198 (207)
T COG1999 126 AELNF---DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGE----PPEEIAA 198 (207)
T ss_pred hcccC---CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCC----ChHHHHH
Confidence 33 22 4456666552 37899999998521 11 12345899999999999875433 2678888
Q ss_pred HHhhcc
Q psy16151 217 LVQAFH 222 (299)
Q Consensus 217 ~l~~L~ 222 (299)
.++.+-
T Consensus 199 ~l~~l~ 204 (207)
T COG1999 199 DLKKLL 204 (207)
T ss_pred HHHHHh
Confidence 877664
No 56
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.4e-13 Score=109.34 Aligned_cols=135 Identities=21% Similarity=0.380 Sum_probs=109.6
Q ss_pred ccCCCCCCCCcEEeeee---CCCC-ceEEcCcc-CCCeEEEEEEeCCCCCCchh-hHHHHHHHHHHHhhcCcE-EEEEeC
Q psy16151 64 FKLVSKPAPFWQGTAVV---DGQL-KEIKLSDY-YGKYLVFFFYPLDFTFVCPT-EILAFNDRLEEFHQINTE-VVAASV 136 (299)
Q Consensus 64 ~l~~G~~aPdF~L~~~~---~~~G-~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~-~~~~l~~l~~~~~~~gv~-vi~Vs~ 136 (299)
...+|+++|..++..-. +.+| ..++..++ +||.|+|+-.|+.++|.|.. ++|.+.+++++|+++||. |+.||+
T Consensus 2 ~~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSV 81 (165)
T COG0678 2 TIMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSV 81 (165)
T ss_pred ccccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEe
Confidence 36789999998887431 1122 45566664 89999999999999999985 999999999999999986 899999
Q ss_pred CCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC--C---CceeEEEEEeCCCcEEEEEecc
Q psy16151 137 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--G---HTLRGLFIIDRNGVLRQITMND 204 (299)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~--g---~~~p~~~lID~dG~I~~~~~~~ 204 (299)
|++..+.+|.+...-. + ...+++|.++++.+.+|+..+.. | .+.|...|+ +||+|.+.+..+
T Consensus 82 ND~FVm~AWak~~g~~----~-~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~ 148 (165)
T COG0678 82 NDAFVMNAWAKSQGGE----G-NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEP 148 (165)
T ss_pred CcHHHHHHHHHhcCCC----c-cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecC
Confidence 9999999999986211 1 67889999999999999987764 2 245778888 699999998755
No 57
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.51 E-value=7.2e-14 Score=114.86 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=71.9
Q ss_pred CCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCcccee
Q psy16151 82 GQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP 161 (299)
Q Consensus 82 ~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p 161 (299)
..|+.++++++ .||+|| ++|||+|+.++|.|+++++++ ++.|++|+.|+... ..||
T Consensus 42 ~~G~~~~l~~~----~lvnFW-AsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~~~----------------~~fp 97 (153)
T TIGR02738 42 PQGRHANQDDY----ALVFFY-QSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQGL----------------TGFP 97 (153)
T ss_pred CcchhhhcCCC----EEEEEE-CCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCCcc----------------cccc
Confidence 35677777665 499999 999999999999999999887 68999999886421 1345
Q ss_pred eeecCchHH-HHHh---CCcccCCCCceeEEEEEeCCCcEEE-EEeccCCCCCCHHHHHHHHhh
Q psy16151 162 LLSDLTHKI-SLDY---GVYLSDQGHTLRGLFIIDRNGVLRQ-ITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 162 ~l~D~~~~~-~~~~---gv~~~~~g~~~p~~~lID~dG~I~~-~~~~~~~~g~~~~evl~~l~~ 220 (299)
...|.+... .+.| ++. ..|++||||++|+++. ++.+.. +.+++.+.++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~v~------~iPTt~LID~~G~~i~~~~~G~~----s~~~l~~~I~~ 151 (153)
T TIGR02738 98 DPLPATPEVMQTFFPNPRPV------VTPATFLVNVNTRKAYPVLQGAV----DEAELANRMDE 151 (153)
T ss_pred cccCCchHHHHHHhccCCCC------CCCeEEEEeCCCCEEEEEeeccc----CHHHHHHHHHH
Confidence 444433333 3445 443 5699999999988654 443322 34455554443
No 58
>KOG3619|consensus
Probab=99.50 E-value=1e-14 Score=145.98 Aligned_cols=74 Identities=35% Similarity=0.429 Sum_probs=70.2
Q ss_pred CCCCCCHHHHHHHHhhccCCCC---CCccccc----cceeccceechHHHHHHHhhcCceEEecceeeecccceeEEEEE
Q psy16151 205 LPVGRSVDETLRLVQAFHDPLR---TGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFI 277 (299)
Q Consensus 205 ~~~g~~~~evl~~l~~L~~~~~---g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~~~~~t~~~ 277 (299)
.++|.+.+++++++.+.++|+| |+|||.| |||++|+|||||||+.+|+.+||.|++||.|.|||||+|.||||
T Consensus 761 LrIGin~GpvvAGVIGArKPqYDIWGNTVNvASRMdSTGv~g~IQVTEEt~~iL~~~gy~~~~RG~i~VKGkGel~Tyfl 840 (867)
T KOG3619|consen 761 LRIGINHGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPGRIQVTEETANILQGLGYRFECRGVINVKGKGELETYFL 840 (867)
T ss_pred eeeceeccceeeeEecCCCCCccccccchhhhhcccccCCCCeEEecHHHHHHHhcCCeeEEecceEEEecccceeEEEe
Confidence 4577788899999999999987 9999999 89999999999999999999999999999999999999999999
Q ss_pred E
Q psy16151 278 R 278 (299)
Q Consensus 278 ~ 278 (299)
.
T Consensus 841 ~ 841 (867)
T KOG3619|consen 841 C 841 (867)
T ss_pred c
Confidence 9
No 59
>KOG0541|consensus
Probab=99.40 E-value=1.9e-12 Score=103.53 Aligned_cols=141 Identities=17% Similarity=0.309 Sum_probs=110.6
Q ss_pred cccccCCCCCCCCcEEeeeeCCC----CceEEcCcc-CCCeEEEEEEeCCCCCCc-hhhHHHHHHHHHHHhhcCcE-EEE
Q psy16151 61 FICFKLVSKPAPFWQGTAVVDGQ----LKEIKLSDY-YGKYLVFFFYPLDFTFVC-PTEILAFNDRLEEFHQINTE-VVA 133 (299)
Q Consensus 61 ~~~~l~~G~~aPdF~L~~~~~~~----G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C-~~~~~~l~~l~~~~~~~gv~-vi~ 133 (299)
.+.++.+|+..|+-++....+.. +.+++++++ +||.++|+-.|+.++|.| ..++|.+.+..++|+.+|+. |+.
T Consensus 5 ~~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iic 84 (171)
T KOG0541|consen 5 VMAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIIC 84 (171)
T ss_pred ccccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEE
Confidence 35678999999993322122222 238899986 899999999999999996 68899999999999999986 889
Q ss_pred EeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC----C-CceeEEEEEeCCCcEEEEEeccCCC
Q psy16151 134 ASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ----G-HTLRGLFIIDRNGVLRQITMNDLPV 207 (299)
Q Consensus 134 Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~----g-~~~p~~~lID~dG~I~~~~~~~~~~ 207 (299)
||+|+++.+.+|.+.+.. .-...++.|+++++.+.+|+..+.. | ...|...++ .||+|.+......+.
T Consensus 85 vSVnDpFv~~aW~k~~g~-----~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~nvE~~g~ 157 (171)
T KOG0541|consen 85 VSVNDPFVMKAWAKSLGA-----NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVNVEEGGT 157 (171)
T ss_pred EecCcHHHHHHHHhhcCc-----cceEEEEecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEEeccCCC
Confidence 999999999999998832 3356789999999999999876642 1 233556777 599999998755444
No 60
>KOG2792|consensus
Probab=99.36 E-value=1.6e-12 Score=112.30 Aligned_cols=137 Identities=18% Similarity=0.211 Sum_probs=100.3
Q ss_pred CCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc-Cc--EEEEEeCCC----HHhHHH
Q psy16151 72 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NT--EVVAASVDS----HFTHLA 144 (299)
Q Consensus 72 PdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~-gv--~vi~Vs~d~----~~~~~~ 144 (299)
-+|+|. |.+|+.++-.||+|||+||+|.++.|...|+.|+..|.++.+++.+. |+ .-|+||+|+ ++.+++
T Consensus 120 GpF~L~---d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~e 196 (280)
T KOG2792|consen 120 GPFSLV---DHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAE 196 (280)
T ss_pred CceEEE---ecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHH
Confidence 379987 77999999999999999999998988889999999999999999854 33 358889886 555566
Q ss_pred HhhcccccCCCCccceeeeecCchHHHHHhCCcccCC----C--C---ceeEEEEEeCCCcEEEEEeccCCCCCCHHHHH
Q psy16151 145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ----G--H---TLRGLFIIDRNGVLRQITMNDLPVGRSVDETL 215 (299)
Q Consensus 145 ~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~----g--~---~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl 215 (299)
+.+++ .+.-+.+.-..+.-.++++.|.|+.... + . +.-.+|||||+|..+..+ +...+.+++.
T Consensus 197 Y~~eF----~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~----GrN~~~~~~~ 268 (280)
T KOG2792|consen 197 YVSEF----HPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYY----GRNYDADELA 268 (280)
T ss_pred HHHhc----ChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhh----cccCCHHHHH
Confidence 66554 2224445555555588999999987541 1 1 123489999999988665 2233455665
Q ss_pred HHHh
Q psy16151 216 RLVQ 219 (299)
Q Consensus 216 ~~l~ 219 (299)
+.|.
T Consensus 269 ~~I~ 272 (280)
T KOG2792|consen 269 DSIL 272 (280)
T ss_pred HHHH
Confidence 5543
No 61
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.31 E-value=6.1e-12 Score=102.39 Aligned_cols=85 Identities=19% Similarity=0.253 Sum_probs=67.1
Q ss_pred ceEEcCc--cCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceee
Q psy16151 85 KEIKLSD--YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL 162 (299)
Q Consensus 85 ~~v~Lsd--~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (299)
+...+.+ .+||++||+|| +.||++|....|.+.++++++.+ ++.++.|.+|... |
T Consensus 9 ~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~----~----------------- 65 (142)
T cd02950 9 SSTPPEVALSNGKPTLVEFY-ADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK----W----------------- 65 (142)
T ss_pred ccCCHHHHHhCCCEEEEEEE-CCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc----c-----------------
Confidence 3444443 37899999999 99999999999999999999875 5788888887431 1
Q ss_pred eecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 163 LSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 163 l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
..+++.|++. ..|+++++|++|+++....+
T Consensus 66 -----~~~~~~~~V~------~iPt~v~~~~~G~~v~~~~G 95 (142)
T cd02950 66 -----LPEIDRYRVD------GIPHFVFLDREGNEEGQSIG 95 (142)
T ss_pred -----HHHHHHcCCC------CCCEEEEECCCCCEEEEEeC
Confidence 1356778886 57999999999999988754
No 62
>KOG4171|consensus
Probab=99.28 E-value=1.7e-12 Score=125.87 Aligned_cols=88 Identities=28% Similarity=0.340 Sum_probs=77.6
Q ss_pred EEeCC-CcEEEEEeccCCCCCCHHHHHHHHhhccCCCC---CCccccc----cceeccceechHHHHHHHhhcC-ceEEe
Q psy16151 190 IIDRN-GVLRQITMNDLPVGRSVDETLRLVQAFHDPLR---TGAINGL----SLLVIGLFQVTEKTCDILEDHG-VTCEL 260 (299)
Q Consensus 190 lID~d-G~I~~~~~~~~~~g~~~~evl~~l~~L~~~~~---g~~vn~a----st~~~~~i~~s~~~~~~L~~~~-~~~~~ 260 (299)
+++|+ |+=+.+ ++|.|.+++++++.+.++|+| |++||+| |++.|++||+|+.|++.|++.+ |+++.
T Consensus 526 v~~p~~~~pi~i-----RiGIHsG~VvAGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~~l~~~~~f~f~p 600 (671)
T KOG4171|consen 526 VVSPVTGEPIQI-----RIGIHSGPVVAGVVGVKMPRYCLFGDTVNLASRMESSSVPGKINVSPTTYRKLKKQGSFEFEP 600 (671)
T ss_pred hcCcCCCCceEE-----EEEeccCCeeeeeecccccceeecCCchhhhhhhhcCCCCceEEeCHHHHHHHHhCCCceeee
Confidence 44554 554433 477889999999999999999 9999999 8999999999999999999888 99999
Q ss_pred cceeeecccceeEEEEEEcccc
Q psy16151 261 RGRTFIKGKGLITTYFIRQQEI 282 (299)
Q Consensus 261 rg~~~~k~~~~~~t~~~~~~~~ 282 (299)
||++.|||||.|.||||....+
T Consensus 601 Rg~v~vk~kg~m~tyFL~~~~~ 622 (671)
T KOG4171|consen 601 RGRVEVKGKGPMETYFLERSLG 622 (671)
T ss_pred cCccccCCCCceEEEEEEecCC
Confidence 9999999999999999986554
No 63
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.6e-11 Score=95.79 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=88.6
Q ss_pred CCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--------CHHhH
Q psy16151 71 APFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHFTH 142 (299)
Q Consensus 71 aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--------~~~~~ 142 (299)
+=||++. +.+|++++|++|+||++||+-. |+-|..-+ +...|..+|++|+++|+.|+++..| +.+++
T Consensus 5 ~yd~~~~---~~~G~~~~l~~~~GkVlLIVNt-ASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI 79 (162)
T COG0386 5 IYDFSVK---DIDGEPVSLSDYKGKVLLIVNT-ASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEI 79 (162)
T ss_pred cccceee---ccCCCCccHHHhCCcEEEEEEc-ccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHH
Confidence 3477876 6699999999999998777776 88898666 8889999999999999999999754 56778
Q ss_pred HHHhhcccccCCCCccceeeeecCc------hHHHHHhCCcccC--CCCc---eeEEEEEeCCCcEEEEEe
Q psy16151 143 LAWVNTPRKEGGLGKLKIPLLSDLT------HKISLDYGVYLSD--QGHT---LRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~p~l~D~~------~~~~~~~gv~~~~--~g~~---~p~~~lID~dG~I~~~~~ 202 (299)
.+|.+.. + +++||++.--+ ..+.+.+.-.... .+.. .=+.||||+||+|+.++.
T Consensus 80 ~~fC~~~--Y----gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~ 144 (162)
T COG0386 80 AKFCQLN--Y----GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFS 144 (162)
T ss_pred HHHHHhc--c----CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeC
Confidence 8888763 3 89999986332 2232222211100 0111 135899999999999984
No 64
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.23 E-value=2.3e-11 Score=109.25 Aligned_cols=107 Identities=19% Similarity=0.225 Sum_probs=79.8
Q ss_pred CceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeee
Q psy16151 84 LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLL 163 (299)
Q Consensus 84 G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l 163 (299)
.+...+++++|+++||+|| ++||++|..++|.|.++++++ |+.|++||+|.... ..||..
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~-AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~----------------~~fp~~ 215 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFF-KSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL----------------PGFPNA 215 (271)
T ss_pred HHHHHHHHhcCCeEEEEEE-CCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc----------------ccCCcc
Confidence 3457889999999999999 889999999999999998887 58999999986421 125555
Q ss_pred ecCchHHHHHhCCcccCCCCceeEEEEEeCC-CcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 164 SDLTHKISLDYGVYLSDQGHTLRGLFIIDRN-GVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 164 ~D~~~~~~~~~gv~~~~~g~~~p~~~lID~d-G~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
+.+..+++.|||. ..|++||+|++ |+|..+..+.. ..+++.+.+..+
T Consensus 216 -~~d~~la~~~gV~------~vPtl~Lv~~~~~~v~~v~~G~~----s~~eL~~~i~~~ 263 (271)
T TIGR02740 216 -RPDAGQAQQLKIR------TVPAVFLADPDPNQFTPIGFGVM----SADELVDRILLA 263 (271)
T ss_pred -cCCHHHHHHcCCC------cCCeEEEEECCCCEEEEEEeCCC----CHHHHHHHHHHH
Confidence 4456789999996 57999999995 55554443322 445565555544
No 65
>KOG2501|consensus
Probab=99.22 E-value=7.5e-11 Score=95.65 Aligned_cols=107 Identities=21% Similarity=0.224 Sum_probs=83.9
Q ss_pred CCCCceEEcC-ccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc--CcEEEEEeCCC-HHhHHHHhhcccccCCCC
Q psy16151 81 DGQLKEIKLS-DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDS-HFTHLAWVNTPRKEGGLG 156 (299)
Q Consensus 81 ~~~G~~v~Ls-d~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d~-~~~~~~~~~~~~~~~~~~ 156 (299)
+.+|..+-.+ +++||.|.++|- +.|||+|+.-.|.|.++|+++++. .++||.||.|. .+++.++....
T Consensus 19 ~~~~~~~~~~~~l~gKvV~lyFs-A~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~------- 90 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGKVVGLYFS-AHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEH------- 90 (157)
T ss_pred ccCCccchHhHhhCCcEEEEEEE-EEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhc-------
Confidence 5567777666 679987777775 999999999999999999999864 38999999986 55666777654
Q ss_pred ccceeee---ecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 157 KLKIPLL---SDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 157 ~~~~p~l---~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
.-.|..+ .|...++.+.|++. .+|+..++.+||.++...
T Consensus 91 ~~~W~~iPf~d~~~~~l~~ky~v~------~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 91 HGDWLAIPFGDDLIQKLSEKYEVK------GIPALVILKPDGTVVTED 132 (157)
T ss_pred CCCeEEecCCCHHHHHHHHhcccC------cCceeEEecCCCCEehHh
Confidence 3444444 33348899999996 579999999999888654
No 66
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.21 E-value=1.8e-10 Score=88.47 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=67.1
Q ss_pred CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151 90 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 169 (299)
Q Consensus 90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 169 (299)
++.+||+|||+|| ++||++|+...|.|.++++++ .++.++.|+.|.... ...
T Consensus 11 ~~~~~k~vvv~F~-a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~-------------------------~~~ 62 (103)
T cd02985 11 KKAKGRLVVLEFA-LKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDS-------------------------TME 62 (103)
T ss_pred HHcCCCEEEEEEE-CCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChH-------------------------HHH
Confidence 3457899999999 999999999999999999998 468888888765321 125
Q ss_pred HHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151 170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ 219 (299)
Q Consensus 170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~ 219 (299)
+++.|++. ..|+++++ ++|+++..+.+ ....++.+.+.
T Consensus 63 l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~~~ 100 (103)
T cd02985 63 LCRREKII------EVPHFLFY-KDGEKIHEEEG-----IGPDELIGDVL 100 (103)
T ss_pred HHHHcCCC------cCCEEEEE-eCCeEEEEEeC-----CCHHHHHHHHH
Confidence 66778885 46775555 89999887733 33456665554
No 67
>KOG1023|consensus
Probab=99.06 E-value=7e-11 Score=112.95 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=71.8
Q ss_pred CCCCCCHHHHHHHHhhccCCCC---CCccccc----cceeccceechHHHHHHHhhc-CceEEecceeeecccceeEEEE
Q psy16151 205 LPVGRSVDETLRLVQAFHDPLR---TGAINGL----SLLVIGLFQVTEKTCDILEDH-GVTCELRGRTFIKGKGLITTYF 276 (299)
Q Consensus 205 ~~~g~~~~evl~~l~~L~~~~~---g~~vn~a----st~~~~~i~~s~~~~~~L~~~-~~~~~~rg~~~~k~~~~~~t~~ 276 (299)
.+.+.+.+++.+.+.++++|+| |+|||+| |+|. ++||+|+++..+|.++ +|.++.||++++||||.+.|||
T Consensus 393 iRig~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~~~l~~~~~~~~e~rG~v~~kgkg~~~t~w 471 (484)
T KOG1023|consen 393 LRIGFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSEEAKNLLTERPQFETEERGLVELKGKGVMSTYW 471 (484)
T ss_pred eeeccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecHHHHHHHHhcCceeeeccCcEEeecCceeeeEE
Confidence 3466778899999999999999 9999999 8999 9999999999999766 6999999999999999999999
Q ss_pred EEcccccc
Q psy16151 277 IRQQEIEK 284 (299)
Q Consensus 277 ~~~~~~~~ 284 (299)
|.|.....
T Consensus 472 l~g~~~~~ 479 (484)
T KOG1023|consen 472 LLGESSKS 479 (484)
T ss_pred eccCcccc
Confidence 99976643
No 68
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.04 E-value=1.3e-09 Score=86.36 Aligned_cols=103 Identities=16% Similarity=0.072 Sum_probs=72.6
Q ss_pred CC-CeEEEEEEeCCCCCCchhhHHHHH---HHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151 93 YG-KYLVFFFYPLDFTFVCPTEILAFN---DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH 168 (299)
Q Consensus 93 ~G-k~vlL~F~~~~~cp~C~~~~~~l~---~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 168 (299)
.| |+++|+|| ++||++|....+.+. ++.+.+++ ++.++.|++|....... |+.......
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~---------------~~~~~~~~~ 74 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTD---------------FDGEALSEK 74 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeec---------------cCCCCccHH
Confidence 57 89999998 999999999998875 56566653 78888888875432211 111123457
Q ss_pred HHHHHhCCcccCCCCceeEEEEEeCC-CcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151 169 KISLDYGVYLSDQGHTLRGLFIIDRN-GVLRQITMNDLPVGRSVDETLRLVQAFH 222 (299)
Q Consensus 169 ~~~~~~gv~~~~~g~~~p~~~lID~d-G~I~~~~~~~~~~g~~~~evl~~l~~L~ 222 (299)
+++++|++. ..|+++++|++ |+++.+..+.. ..+++.+.++.+.
T Consensus 75 ~l~~~~~v~------~~Pt~~~~~~~gg~~~~~~~G~~----~~~~~~~~l~~~~ 119 (125)
T cd02951 75 ELARKYRVR------FTPTVIFLDPEGGKEIARLPGYL----PPDEFLAYLEYVQ 119 (125)
T ss_pred HHHHHcCCc------cccEEEEEcCCCCceeEEecCCC----CHHHHHHHHHHHH
Confidence 899999986 57999999999 89998874432 3455666665543
No 69
>KOG1651|consensus
Probab=99.02 E-value=1.8e-09 Score=87.79 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=88.4
Q ss_pred CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--------CHH
Q psy16151 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHF 140 (299)
Q Consensus 69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--------~~~ 140 (299)
..+=||+.. |.+|+.++|+.|+||++||+-. |+.|..-..+...|+.++++|+++|++|++...+ +.+
T Consensus 12 ~siydf~~~---d~~G~~v~l~~yrGkV~LiVNV-AS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 12 GSIYDFSAK---DLDGEYVSLSQYRGKVVLIVNV-ASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred cceeeeEEe---cCCCCCccHHHhCCeEEEEEEc-ccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence 345578876 6699999999999998888887 8889988888889999999999999999999754 345
Q ss_pred hHHHHhhcccccCCCCccceeeee--cCc----hHHHHHhCCcccC-CCCce---eEEEEEeCCCcEEEEEe
Q psy16151 141 THLAWVNTPRKEGGLGKLKIPLLS--DLT----HKISLDYGVYLSD-QGHTL---RGLFIIDRNGVLRQITM 202 (299)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~p~l~--D~~----~~~~~~~gv~~~~-~g~~~---p~~~lID~dG~I~~~~~ 202 (299)
++..+... ++ +..||+.. |.+ ..+.+-+.-.... -|..+ =+-||||+||.|+.++.
T Consensus 88 Ei~~f~~~--r~----~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 88 EILNFVKV--RY----GAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHHHHHHh--cc----CCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 56666652 23 67788874 222 2233322211100 01111 24799999999999984
No 70
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.00 E-value=4.6e-09 Score=80.42 Aligned_cols=86 Identities=13% Similarity=0.100 Sum_probs=63.6
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.|++++|+|| ++||++|+...|.|.++++++++..+.++.+..|. .++++
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~-----------------------------~~~~~ 65 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT-----------------------------IDTLK 65 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC-----------------------------HHHHH
Confidence 4789999999 99999999999999999998875556666666552 23456
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~ 220 (299)
+|++. ..|+.+++ ++|+++....+ .....+.+.++.
T Consensus 66 ~~~v~------~~Pt~~~~-~~g~~~~~~~G-----~~~~~~~~~i~~ 101 (102)
T cd02948 66 RYRGK------CEPTFLFY-KNGELVAVIRG-----ANAPLLNKTITE 101 (102)
T ss_pred HcCCC------cCcEEEEE-ECCEEEEEEec-----CChHHHHHHHhh
Confidence 78875 45765555 79999887743 245667776654
No 71
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.99 E-value=3.2e-09 Score=81.06 Aligned_cols=74 Identities=16% Similarity=0.200 Sum_probs=57.5
Q ss_pred CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151 90 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 169 (299)
Q Consensus 90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 169 (299)
++++||++||.|| ++||++|+...|.+.+++++++ ++.++.|..++ ....
T Consensus 14 ~~~~g~~vlV~F~-a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~~---------------------------~~~~ 63 (100)
T cd02999 14 AFNREDYTAVLFY-ASWCPFSASFRPHFNALSSMFP--QIRHLAIEESS---------------------------IKPS 63 (100)
T ss_pred HhcCCCEEEEEEE-CCCCHHHHhHhHHHHHHHHHhc--cCceEEEECCC---------------------------CCHH
Confidence 4679999999999 9999999999999999999986 46677664331 1236
Q ss_pred HHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
++++|++. ..|++++++ +| .+..+
T Consensus 64 l~~~~~V~------~~PT~~lf~-~g-~~~~~ 87 (100)
T cd02999 64 LLSRYGVV------GFPTILLFN-ST-PRVRY 87 (100)
T ss_pred HHHhcCCe------ecCEEEEEc-CC-ceeEe
Confidence 77889986 579999996 45 44444
No 72
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.98 E-value=7.8e-09 Score=80.43 Aligned_cols=90 Identities=11% Similarity=0.226 Sum_probs=67.8
Q ss_pred ccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151 91 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 170 (299)
Q Consensus 91 d~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~ 170 (299)
...|+++||+|| ++||++|....|.+.++.+++++.++.+..|+.|. +..+
T Consensus 21 ~~~~~~vlV~F~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~----------------------------~~~l 71 (111)
T cd02963 21 KSFKKPYLIKIT-SDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH----------------------------ERRL 71 (111)
T ss_pred ccCCCeEEEEEE-CCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc----------------------------cHHH
Confidence 347899999999 99999999999999999999987677777776552 2356
Q ss_pred HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151 171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~ 220 (299)
+++|++. ..|+++++ ++|+++....+. ...+++.+.++.
T Consensus 72 ~~~~~V~------~~Pt~~i~-~~g~~~~~~~G~----~~~~~l~~~i~~ 110 (111)
T cd02963 72 ARKLGAH------SVPAIVGI-INGQVTFYHDSS----FTKQHVVDFVRK 110 (111)
T ss_pred HHHcCCc------cCCEEEEE-ECCEEEEEecCC----CCHHHHHHHHhc
Confidence 7788885 57899999 599887665222 235566666554
No 73
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.93 E-value=9e-09 Score=89.12 Aligned_cols=143 Identities=18% Similarity=0.259 Sum_probs=102.0
Q ss_pred cccccCCCCCCCCcEEeeeeCCCCce-EEcCcc-C-CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC-
Q psy16151 61 FICFKLVSKPAPFWQGTAVVDGQLKE-IKLSDY-Y-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV- 136 (299)
Q Consensus 61 ~~~~l~~G~~aPdF~L~~~~~~~G~~-v~Lsd~-~-Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~- 136 (299)
......+|..|||+.+.++ +|+. .++.|| + ++|+||+|...+ ||+-+..+..++++.++|.+ -++++.|-+
T Consensus 69 l~~~a~~G~~APns~vv~l---~g~~~~~ildf~~g~RPLVlnFGS~T-CPpF~~~l~~f~~l~~~f~d-~adFl~VYI~ 143 (237)
T PF00837_consen 69 LFKEAKLGGPAPNSPVVTL---DGQRSCRILDFAKGNRPLVLNFGSCT-CPPFMAKLDAFKRLVEDFSD-VADFLIVYIE 143 (237)
T ss_pred cccceeCCCCCCCCceEee---CCCcceeHHHhccCCCCeEEEccccc-chHHHHHHHHHHHHHHHhhh-hhheehhhHh
Confidence 4456788999999998855 7777 999999 4 479999998555 89999999999999999986 334554421
Q ss_pred -----C------------CHHhHHHHhh---cccccCCCCccceeeeecC-chHHHHHhCCcccCCCCceeEEEEEeCCC
Q psy16151 137 -----D------------SHFTHLAWVN---TPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGHTLRGLFIIDRNG 195 (299)
Q Consensus 137 -----d------------~~~~~~~~~~---~~~~~~~~~~~~~p~l~D~-~~~~~~~~gv~~~~~g~~~p~~~lID~dG 195 (299)
| .+.++++-++ .+.++ ...+|++.|. ++...++||...+ ..||| .||
T Consensus 144 EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~----~~~~pi~vD~mdN~~~~~YgA~Pe-------RlyIi-~~g 211 (237)
T PF00837_consen 144 EAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEE----FPQCPIVVDTMDNNFNKAYGALPE-------RLYII-QDG 211 (237)
T ss_pred hhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhh----CCCCCEEEEccCCHHHHHhCCCcc-------eEEEE-ECC
Confidence 1 1112222222 22222 4678999886 6899999998622 47777 499
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 196 VLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 196 ~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
+|+|.. +..+.+-+.+++.+.+++.
T Consensus 212 kv~Y~G-g~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 212 KVVYKG-GPGPFGYSPEELREWLEKY 236 (237)
T ss_pred EEEEeC-CCCCCcCCHHHHHHHHHhc
Confidence 999997 3344566788888887754
No 74
>KOG3618|consensus
Probab=98.89 E-value=5.6e-10 Score=108.75 Aligned_cols=77 Identities=23% Similarity=0.260 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHhhcc---CCCCCCccccc----cceeccceechHHHHHHHhhcCceEEecceeeecccceeEEEEEEc
Q psy16151 207 VGRSVDETLRLVQAFH---DPLRTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIRQ 279 (299)
Q Consensus 207 ~g~~~~evl~~l~~L~---~~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~~~~~t~~~~~ 279 (299)
.|-+.+++-+++.+-. ...||++||.| |||++.+|||++++++.|.+. |++|+||.|+||||+.|.||++.+
T Consensus 1192 vG~NiGpvTAGVIGTtKLyYDIWGDtVNiASRMdsTGv~nRIQVs~~~~~~L~~r-YeFe~Rg~v~VKGkd~M~tyLy~~ 1270 (1318)
T KOG3618|consen 1192 VGFNIGPVTAGVIGTTKLYYDIWGDTVNIASRMDSTGVENRIQVSEESYRVLSKR-YEFEYRGTVNVKGKDQMKTYLYPK 1270 (1318)
T ss_pred eeccccCccccccccceeeehhhcchhhhhhhccccCCcceeEecHHHHHHHHhh-ccccccceEEEeccCcceeEEecc
Confidence 3344455555554444 45679999999 899999999999999999886 999999999999999999999988
Q ss_pred ccccc
Q psy16151 280 QEIEK 284 (299)
Q Consensus 280 ~~~~~ 284 (299)
..+..
T Consensus 1271 r~d~~ 1275 (1318)
T KOG3618|consen 1271 RTDHR 1275 (1318)
T ss_pred ccCCC
Confidence 77654
No 75
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.86 E-value=3e-08 Score=74.63 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=57.5
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
+|+++||+|| ++||++|....|.+.++.+.+.+ .+.++.|..|. ...+++
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~l~~ 60 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDA----------------------------QPQIAQ 60 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccC----------------------------CHHHHH
Confidence 5789999999 99999999999999999998865 45566665442 245777
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
.|++. ..|++++++ +|+++..+
T Consensus 61 ~~~i~------~~Pt~~~~~-~g~~~~~~ 82 (96)
T cd02956 61 QFGVQ------ALPTVYLFA-AGQPVDGF 82 (96)
T ss_pred HcCCC------CCCEEEEEe-CCEEeeee
Confidence 88885 578999996 99988765
No 76
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.84 E-value=1.1e-08 Score=79.11 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=67.2
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHH---HHhhcCcEEEEEeCCCHHh-HHHHhhcccccCCCCccceeeeecCch
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLE---EFHQINTEVVAASVDSHFT-HLAWVNTPRKEGGLGKLKIPLLSDLTH 168 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~---~~~~~gv~vi~Vs~d~~~~-~~~~~~~~~~~~~~~~~~~p~l~D~~~ 168 (299)
.||++|++|| ..|||.|....+.+.+..+ .++ .++.++.++.++... ..+|.+.. +..+ +.....
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~ 72 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKLEKELFPDNDVARYLK-DDFQVIFVNIDDSRDESEAVLDFD-------GQKN--VRLSNK 72 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEH-CECEEEECESHSHHHHHHHHHSHT-------CHSS--CHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHhh-cCeEEEEEecCCcccccccccccc-------cchh--hhHHHH
Confidence 5789999998 9999999988777775433 332 368889998877543 33455432 2222 222346
Q ss_pred HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHH
Q psy16151 169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRL 217 (299)
Q Consensus 169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~ 217 (299)
++++.||+. ..|+.+++|++|+++++..+.. +.+++++.
T Consensus 73 ~l~~~~~v~------gtPt~~~~d~~G~~v~~~~G~~----~~~~l~~~ 111 (112)
T PF13098_consen 73 ELAQRYGVN------GTPTIVFLDKDGKIVYRIPGYL----SPEELLKM 111 (112)
T ss_dssp HHHHHTT--------SSSEEEECTTTSCEEEEEESS------HHHHHHH
T ss_pred HHHHHcCCC------ccCEEEEEcCCCCEEEEecCCC----CHHHHHhh
Confidence 899999997 4689999999999998764332 34555443
No 77
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.79 E-value=3.7e-08 Score=75.43 Aligned_cols=77 Identities=10% Similarity=0.101 Sum_probs=58.6
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 169 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 169 (299)
.||++||+|| +.||++|....+.+ .++.+.+++ ++.++.|..+... +....
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~------------------------~~~~~ 63 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKND------------------------PEITA 63 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCC------------------------HHHHH
Confidence 5789999999 99999999998877 567777765 7788877765311 00235
Q ss_pred HHHHhCCcccCCCCceeEEEEEeC-CCcEEEEE
Q psy16151 170 ISLDYGVYLSDQGHTLRGLFIIDR-NGVLRQIT 201 (299)
Q Consensus 170 ~~~~~gv~~~~~g~~~p~~~lID~-dG~I~~~~ 201 (299)
++++|++. ..|+++++++ +|++..+.
T Consensus 64 ~~~~~~i~------~~Pti~~~~~~~g~~~~~~ 90 (104)
T cd02953 64 LLKRFGVF------GPPTYLFYGPGGEPEPLRL 90 (104)
T ss_pred HHHHcCCC------CCCEEEEECCCCCCCCccc
Confidence 67778885 5799999999 89988776
No 78
>PRK09381 trxA thioredoxin; Provisional
Probab=98.74 E-value=1.2e-07 Score=73.19 Aligned_cols=87 Identities=14% Similarity=0.280 Sum_probs=64.7
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.+++++|+|| ++|||+|+...|.+.++.+++.+ ++.++.|..|.. ..+++
T Consensus 20 ~~~~vvv~f~-~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~----------------------------~~~~~ 69 (109)
T PRK09381 20 ADGAILVDFW-AEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN----------------------------PGTAP 69 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCC----------------------------hhHHH
Confidence 3678999999 99999999999999999999975 577777765531 23556
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~ 220 (299)
.|++. ..|+++++ ++|+++....+. ...+++.+.+++
T Consensus 70 ~~~v~------~~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~ 106 (109)
T PRK09381 70 KYGIR------GIPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDA 106 (109)
T ss_pred hCCCC------cCCEEEEE-eCCeEEEEecCC----CCHHHHHHHHHH
Confidence 77875 56888888 699998877333 235566665554
No 79
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.74 E-value=7.8e-08 Score=74.86 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=59.1
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.+++|||.|| ++||++|+...|.|.++.+++.+ .+.++-|.+|. ..+++.
T Consensus 13 ~~~~vVV~F~-A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~----------------------------~~~la~ 62 (114)
T cd02954 13 EEKVVVIRFG-RDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDE----------------------------VPDFNK 62 (114)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCC----------------------------CHHHHH
Confidence 4578999999 99999999999999999998864 24566555542 346778
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMND 204 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~ 204 (299)
.|+|. ..|+.+++ ++|+.+.+..+.
T Consensus 63 ~~~V~------~iPTf~~f-k~G~~v~~~~G~ 87 (114)
T cd02954 63 MYELY------DPPTVMFF-FRNKHMKIDLGT 87 (114)
T ss_pred HcCCC------CCCEEEEE-ECCEEEEEEcCC
Confidence 89986 57888888 799999888643
No 80
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.72 E-value=1.1e-07 Score=73.29 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=64.9
Q ss_pred CcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--------CHHhHHH
Q psy16151 73 FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--------SHFTHLA 144 (299)
Q Consensus 73 dF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--------~~~~~~~ 144 (299)
+|++. |.+|++++|++|+||++||+-. |+-|..-. +...|++++++|+++|++|+++..+ +.+++++
T Consensus 3 df~~~---~~~G~~v~l~~y~Gkv~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~ 77 (108)
T PF00255_consen 3 DFSAK---DIDGKPVSLSKYKGKVLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKE 77 (108)
T ss_dssp GSEEE---BTTSSEEEGGGGTTSEEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred ceeee---CCCCCEECHHHcCCCEEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHH
Confidence 56766 6699999999999998887777 78898777 9999999999999999999999764 3555666
Q ss_pred HhhcccccCCCCccceeeee
Q psy16151 145 WVNTPRKEGGLGKLKIPLLS 164 (299)
Q Consensus 145 ~~~~~~~~~~~~~~~~p~l~ 164 (299)
+.... + +..||+..
T Consensus 78 ~~~~~--~----~~~F~vf~ 91 (108)
T PF00255_consen 78 FCKEK--F----GVTFPVFE 91 (108)
T ss_dssp HHCHC--H----T-SSEEBS
T ss_pred HHHhc--c----CCcccceE
Confidence 66541 2 67888874
No 81
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.70 E-value=9.8e-08 Score=73.40 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=55.9
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.|++++|.|| +.||++|....|.+.++++++.+ .+.++.|+.|.. ...++++
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~--------------------------~~~~~~~ 68 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDED--------------------------KNKPLCG 68 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcc--------------------------ccHHHHH
Confidence 4678999999 99999999999999999998874 577888877642 1346777
Q ss_pred HhCCcccCCCCceeEEEEEeCCCc
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGV 196 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~ 196 (299)
.|++. ..|+.+++++.+.
T Consensus 69 ~~~i~------~~Pt~~~~~~~~~ 86 (109)
T cd03002 69 KYGVQ------GFPTLKVFRPPKK 86 (109)
T ss_pred HcCCC------cCCEEEEEeCCCc
Confidence 88886 5689999987763
No 82
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.65 E-value=1.9e-07 Score=72.22 Aligned_cols=75 Identities=9% Similarity=0.186 Sum_probs=57.2
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
+||+++|.|| +.||++|....|.+.++++++++.++.+..|..|.. +..+++
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~---------------------------~~~~~~ 71 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE---------------------------QREFAK 71 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc---------------------------chhhHH
Confidence 5789999998 999999999999999999999876788888876641 012233
Q ss_pred -HhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 173 -DYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 173 -~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
.|++. ..|+.++++++++....+
T Consensus 72 ~~~~v~------~~Pti~~f~~~~~~~~~y 95 (109)
T cd02993 72 EELQLK------SFPTILFFPKNSRQPIKY 95 (109)
T ss_pred hhcCCC------cCCEEEEEcCCCCCceec
Confidence 36764 468999998877655444
No 83
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.64 E-value=3.6e-07 Score=69.36 Aligned_cols=85 Identities=14% Similarity=0.261 Sum_probs=58.8
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
+|+ ++|.|| +.||++|....|.+.+++++++..++.+..|..+. +..+++
T Consensus 16 ~~~-~lv~f~-a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~----------------------------~~~~~~ 65 (101)
T cd02994 16 EGE-WMIEFY-APWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ----------------------------EPGLSG 65 (101)
T ss_pred CCC-EEEEEE-CCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC----------------------------CHhHHH
Confidence 566 678898 99999999999999999988765566666554332 234677
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ 219 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~ 219 (299)
.|++. ..|+++++ ++|++ ..+.+ ....+++.+.++
T Consensus 66 ~~~i~------~~Pt~~~~-~~g~~-~~~~G----~~~~~~l~~~i~ 100 (101)
T cd02994 66 RFFVT------ALPTIYHA-KDGVF-RRYQG----PRDKEDLISFIE 100 (101)
T ss_pred HcCCc------ccCEEEEe-CCCCE-EEecC----CCCHHHHHHHHh
Confidence 88885 56888876 89986 33322 234555555543
No 84
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.63 E-value=1.1e-07 Score=74.77 Aligned_cols=82 Identities=13% Similarity=0.199 Sum_probs=55.7
Q ss_pred EcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCc
Q psy16151 88 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 167 (299)
Q Consensus 88 ~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~ 167 (299)
..+...+|+|+|+|| ++||++|....|.+.+..+... .+..++.|.+|....
T Consensus 13 ~~A~~~~kpVlV~F~-a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~-------------------------- 64 (117)
T cd02959 13 KEAKDSGKPLMLLIH-KTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEE-------------------------- 64 (117)
T ss_pred HHHHHcCCcEEEEEe-CCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCC--------------------------
Confidence 334457899999999 9999999999999988766543 344566666653210
Q ss_pred hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151 168 HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 168 ~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~ 202 (299)
...+.|++. |...|+++++|++|+++.++.
T Consensus 65 -~~~~~~~~~----g~~vPt~~f~~~~Gk~~~~~~ 94 (117)
T cd02959 65 -PKDEEFSPD----GGYIPRILFLDPSGDVHPEII 94 (117)
T ss_pred -chhhhcccC----CCccceEEEECCCCCCchhhc
Confidence 011133332 113689999999999988654
No 85
>PRK10996 thioredoxin 2; Provisional
Probab=98.62 E-value=4.7e-07 Score=73.31 Aligned_cols=87 Identities=13% Similarity=0.175 Sum_probs=64.0
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.+|+++|+|| ++||++|+...|.|.++++++.+ ++.++.|..+. ..++++
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~----------------------------~~~l~~ 100 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEA----------------------------ERELSA 100 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCC----------------------------CHHHHH
Confidence 4789999999 99999999999999999988764 46666664432 246778
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~ 220 (299)
+|++. ..|+.+++ ++|+++....+. ...+++.+.++.
T Consensus 101 ~~~V~------~~Ptlii~-~~G~~v~~~~G~----~~~e~l~~~l~~ 137 (139)
T PRK10996 101 RFRIR------SIPTIMIF-KNGQVVDMLNGA----VPKAPFDSWLNE 137 (139)
T ss_pred hcCCC------ccCEEEEE-ECCEEEEEEcCC----CCHHHHHHHHHH
Confidence 88886 46887776 599998876432 245566666654
No 86
>PHA02278 thioredoxin-like protein
Probab=98.60 E-value=4.6e-07 Score=69.52 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=59.2
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.++++||+|| ++||++|+...|.+.++.+++.. .+.++-|.+|... . | ..++++
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~-----------------~------d-~~~l~~ 66 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAED-----------------V------D-REKAVK 66 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccc-----------------c------c-cHHHHH
Confidence 5789999999 99999999999999999877532 3567777776421 0 1 235778
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
.|+|. ..|+.+++ ++|+.+.+..+
T Consensus 67 ~~~I~------~iPT~i~f-k~G~~v~~~~G 90 (103)
T PHA02278 67 LFDIM------STPVLIGY-KDGQLVKKYED 90 (103)
T ss_pred HCCCc------cccEEEEE-ECCEEEEEEeC
Confidence 88986 56888888 68999988744
No 87
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.59 E-value=4.5e-07 Score=74.43 Aligned_cols=81 Identities=10% Similarity=0.099 Sum_probs=58.8
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
+++++||+|| ++||++|....|.+.++.+++.+.++.++.|++|... ++++
T Consensus 46 ~~~~vvV~Fy-a~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~----------------------------~la~ 96 (152)
T cd02962 46 KRVTWLVEFF-TTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP----------------------------NVAE 96 (152)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH----------------------------HHHH
Confidence 4578999999 9999999999999999999998667888888876432 3344
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
+|++.....-...|+.+++ ++|+.+.+..+
T Consensus 97 ~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 97 KFRVSTSPLSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred HcCceecCCcCCCCEEEEE-ECCEEEEEEec
Confidence 4454310000136888888 59999888754
No 88
>KOG0907|consensus
Probab=98.58 E-value=7.2e-07 Score=68.74 Aligned_cols=84 Identities=14% Similarity=0.235 Sum_probs=64.2
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.+|.+|++|+ ++||++|+...|.+.++..+|.+ +.++-|.+|. ..++++
T Consensus 20 ~~kliVvdF~-a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde----------------------------~~~~~~ 68 (106)
T KOG0907|consen 20 GDKLVVVDFY-ATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE----------------------------LEEVAK 68 (106)
T ss_pred CCCeEEEEEE-CCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc----------------------------CHhHHH
Confidence 3588888886 99999999999999999999986 8888888774 135667
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ 219 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~ 219 (299)
.|++. ..|+..++ ++|+.+....+. +.+++.+.+.
T Consensus 69 ~~~V~------~~PTf~f~-k~g~~~~~~vGa-----~~~~l~~~i~ 103 (106)
T KOG0907|consen 69 EFNVK------AMPTFVFY-KGGEEVDEVVGA-----NKAELEKKIA 103 (106)
T ss_pred hcCce------EeeEEEEE-ECCEEEEEEecC-----CHHHHHHHHH
Confidence 78886 56887777 889888777433 3445555554
No 89
>KOG0910|consensus
Probab=98.57 E-value=3e-07 Score=74.17 Aligned_cols=73 Identities=11% Similarity=0.170 Sum_probs=58.1
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.++||||+|| +.||.+|....|.|.++..+|.+ .+++.-|.+| ...+++.
T Consensus 60 S~~PVlVdF~-A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD----------------------------~~~ela~ 109 (150)
T KOG0910|consen 60 SDVPVLVDFH-AEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTD----------------------------EHPELAE 109 (150)
T ss_pred cCCCEEEEEe-cCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccc----------------------------cccchHh
Confidence 4679999999 99999999999999999998853 4555555443 3457788
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~ 202 (299)
.|+|. +.|+++++ ++|+.+....
T Consensus 110 ~Y~I~------avPtvlvf-knGe~~d~~v 132 (150)
T KOG0910|consen 110 DYEIS------AVPTVLVF-KNGEKVDRFV 132 (150)
T ss_pred hccee------eeeEEEEE-ECCEEeeeec
Confidence 89986 67999999 6999986663
No 90
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.56 E-value=5.7e-07 Score=68.83 Aligned_cols=87 Identities=13% Similarity=0.154 Sum_probs=58.5
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC--cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 170 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g--v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~ 170 (299)
++++++|.|| ++||++|+...|.+.++++++++.+ +.+..+..+ ....+
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~----------------------------~~~~~ 64 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT----------------------------AYSSI 64 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc----------------------------cCHhH
Confidence 4568888888 9999999999999999999997654 333333322 12356
Q ss_pred HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151 171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~ 220 (299)
++.|++. ..|+.++++ +|.+ ..+.+ ....+++.+.++.
T Consensus 65 ~~~~~I~------~~Pt~~l~~-~~~~-~~~~G----~~~~~~l~~~~~~ 102 (104)
T cd03000 65 ASEFGVR------GYPTIKLLK-GDLA-YNYRG----PRTKDDIVEFANR 102 (104)
T ss_pred HhhcCCc------cccEEEEEc-CCCc-eeecC----CCCHHHHHHHHHh
Confidence 7788886 579999994 4543 33322 2345666665553
No 91
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.54 E-value=1e-06 Score=66.22 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=54.7
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 173 (299)
+++++|+|| ++||++|+...+.|.++.+++ ..++.++.|..+. ..++++.
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~----------------------------~~~~~~~ 63 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE----------------------------LPEISEK 63 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc----------------------------CHHHHHh
Confidence 689999999 999999999999999998887 3355555553221 2457778
Q ss_pred hCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151 174 YGVYLSDQGHTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~ 202 (299)
|++. ..|+.+++ ++|+++....
T Consensus 64 ~~i~------~~Pt~~~~-~~g~~~~~~~ 85 (97)
T cd02984 64 FEIT------AVPTFVFF-RNGTIVDRVS 85 (97)
T ss_pred cCCc------cccEEEEE-ECCEEEEEEe
Confidence 8885 46888888 5899987763
No 92
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.52 E-value=1.3e-06 Score=66.01 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=56.2
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.+++++++|| +.||+.|....+.+.++.+++.+ ++.++.|..|. +.++++
T Consensus 12 ~~~~vlv~f~-a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~----------------------------~~~l~~ 61 (97)
T cd02949 12 SDRLILVLYT-SPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE----------------------------DQEIAE 61 (97)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC----------------------------CHHHHH
Confidence 4678888888 99999999999999999988864 56666665442 235667
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~ 202 (299)
.|++. ..|+.++++ +|+++....
T Consensus 62 ~~~v~------~vPt~~i~~-~g~~v~~~~ 84 (97)
T cd02949 62 AAGIM------GTPTVQFFK-DKELVKEIS 84 (97)
T ss_pred HCCCe------eccEEEEEE-CCeEEEEEe
Confidence 77875 568999995 899887763
No 93
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.52 E-value=5.3e-07 Score=68.54 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=55.3
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.+++++|.|| +.||++|....|.+.++.+++++ .+.+..|+.|. ...+++
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 66 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGD----------------------------DRMLCR 66 (101)
T ss_pred CCCeEEEEEE-CCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCc----------------------------cHHHHH
Confidence 5678999998 99999999999999999999875 46677776653 224666
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
.|++. ..|+.+++ ++|+....+
T Consensus 67 ~~~v~------~~Pt~~~~-~~g~~~~~~ 88 (101)
T cd03003 67 SQGVN------SYPSLYVF-PSGMNPEKY 88 (101)
T ss_pred HcCCC------ccCEEEEE-cCCCCcccC
Confidence 77775 46888888 789865443
No 94
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.49 E-value=1.4e-06 Score=66.13 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=53.7
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc-CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS 171 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~-gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~ 171 (299)
++++++|+|| ++||+.|+...|.+.++.+.+++. .+.++.|..+. |....+.
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--------------------------~~~~~~~ 68 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK--------------------------PEHDALK 68 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC--------------------------CccHHHH
Confidence 4678999999 999999999999999999988753 34444444332 1134677
Q ss_pred HHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
+.|++. ..|+.++ .++|+++..+
T Consensus 69 ~~~~i~------~~Pt~~~-~~~g~~~~~~ 91 (104)
T cd02997 69 EEYNVK------GFPTFKY-FENGKFVEKY 91 (104)
T ss_pred HhCCCc------cccEEEE-EeCCCeeEEe
Confidence 888885 4577554 4789977665
No 95
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.48 E-value=1e-06 Score=67.23 Aligned_cols=73 Identities=7% Similarity=0.067 Sum_probs=55.6
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.+++++|.|| ++||++|+...|.+.++.+++++ ++.+..|..+. ..++++
T Consensus 18 ~~~~v~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~ 67 (104)
T cd03004 18 RKEPWLVDFY-APWCGPCQALLPELRKAARALKG-KVKVGSVDCQK----------------------------YESLCQ 67 (104)
T ss_pred CCCeEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCc----------------------------hHHHHH
Confidence 4568999998 99999999999999999998853 46666665442 335677
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
.|++. ..|+.+++.+.|+....+
T Consensus 68 ~~~i~------~~Pt~~~~~~g~~~~~~~ 90 (104)
T cd03004 68 QANIR------AYPTIRLYPGNASKYHSY 90 (104)
T ss_pred HcCCC------cccEEEEEcCCCCCceEc
Confidence 78885 568999997665776665
No 96
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.47 E-value=1.2e-06 Score=66.31 Aligned_cols=72 Identities=8% Similarity=0.188 Sum_probs=54.0
Q ss_pred eEEEEEEeCCCCCCchhhHHHHHHHHHHHhh--cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151 96 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173 (299)
Q Consensus 96 ~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~--~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 173 (299)
+++|.|| +.||++|+...|.+.++++++++ .++.++.|..+. +..+++.
T Consensus 18 ~~lv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~----------------------------~~~~~~~ 68 (102)
T cd03005 18 NHFVKFF-APWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ----------------------------HRELCSE 68 (102)
T ss_pred CEEEEEE-CCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC----------------------------ChhhHhh
Confidence 5888988 99999999999999999999975 245555554331 2356777
Q ss_pred hCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
|++. ..|+.+++ ++|+.+..+.+
T Consensus 69 ~~v~------~~Pt~~~~-~~g~~~~~~~G 91 (102)
T cd03005 69 FQVR------GYPTLLLF-KDGEKVDKYKG 91 (102)
T ss_pred cCCC------cCCEEEEE-eCCCeeeEeeC
Confidence 8875 56898888 68887766533
No 97
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.46 E-value=1.6e-06 Score=65.35 Aligned_cols=88 Identities=11% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC-cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN-TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS 171 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g-v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~ 171 (299)
++++++|.|| ++||+.|+...+.+.++.+.++..+ +.++.+.. |.+..+.
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~----------------------------~~~~~~~ 62 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA----------------------------TAEKDLA 62 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc----------------------------cchHHHH
Confidence 6889999999 9999999999999999988887543 44443332 2235677
Q ss_pred HHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151 172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~ 220 (299)
+.|++. ..|+.+++++++. ...+.+ ....+++...++.
T Consensus 63 ~~~~i~------~~P~~~~~~~~~~-~~~~~g----~~~~~~l~~~i~~ 100 (102)
T TIGR01126 63 SRFGVS------GFPTIKFFPKGKK-PVDYEG----GRDLEAIVEFVNE 100 (102)
T ss_pred HhCCCC------cCCEEEEecCCCc-ceeecC----CCCHHHHHHHHHh
Confidence 788885 5689999988876 333322 2345566665543
No 98
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.45 E-value=1.8e-06 Score=66.46 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=52.2
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCcccee-eeecCchHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKIS 171 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~ 171 (299)
.+++++|.|| +.||++|+...|.+.++++++++..- .. +.+.|. +-+|.+..++
T Consensus 17 ~~~~vlv~F~-a~wC~~C~~~~p~~~~~a~~~~~~~~-----------------~~-------~~~~~~~vd~d~~~~l~ 71 (108)
T cd02996 17 SAELVLVNFY-ADWCRFSQMLHPIFEEAAAKIKEEFP-----------------DA-------GKVVWGKVDCDKESDIA 71 (108)
T ss_pred cCCEEEEEEE-CCCCHHHHhhHHHHHHHHHHHhhccC-----------------CC-------CcEEEEEEECCCCHHHH
Confidence 3568888888 99999999999999999988764210 00 012222 2234456788
Q ss_pred HHhCCcccCCCCceeEEEEEeCCCcEE
Q psy16151 172 LDYGVYLSDQGHTLRGLFIIDRNGVLR 198 (299)
Q Consensus 172 ~~~gv~~~~~g~~~p~~~lID~dG~I~ 198 (299)
++||+. ..|+.+++ ++|++.
T Consensus 72 ~~~~v~------~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 72 DRYRIN------KYPTLKLF-RNGMMM 91 (108)
T ss_pred HhCCCC------cCCEEEEE-eCCcCc
Confidence 899986 57898888 789854
No 99
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.45 E-value=1.5e-06 Score=67.42 Aligned_cols=74 Identities=15% Similarity=0.160 Sum_probs=58.2
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.+|.|||.|+ ++||++|+..-|.|.++.+++++. +.++-|.+|. ..++++
T Consensus 13 ~~klVVVdF~-a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe----------------------------v~dva~ 62 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK----------------------------VPVYTQ 62 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc----------------------------cHHHHH
Confidence 5789999999 999999999999999999998642 6777776653 245677
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
.|++. ..|+++++ ++|+-.....+
T Consensus 63 ~y~I~------amPtfvff-kngkh~~~d~g 86 (114)
T cd02986 63 YFDIS------YIPSTIFF-FNGQHMKVDYG 86 (114)
T ss_pred hcCce------eCcEEEEE-ECCcEEEEecC
Confidence 78875 46888877 78887777653
No 100
>PTZ00051 thioredoxin; Provisional
Probab=98.44 E-value=1.8e-06 Score=65.04 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=54.6
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.+++++|+|| ++||++|+...+.+.++.+++. ++.++.|..+. ...+++
T Consensus 17 ~~~~vli~f~-~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~----------------------------~~~~~~ 65 (98)
T PTZ00051 17 QNELVIVDFY-AEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDE----------------------------LSEVAE 65 (98)
T ss_pred cCCeEEEEEE-CCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcc----------------------------hHHHHH
Confidence 4578899998 9999999999999999988764 45665554321 246777
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
.|++. ..|+.+++ ++|+++....+
T Consensus 66 ~~~v~------~~Pt~~~~-~~g~~~~~~~G 89 (98)
T PTZ00051 66 KENIT------SMPTFKVF-KNGSVVDTLLG 89 (98)
T ss_pred HCCCc------eeeEEEEE-eCCeEEEEEeC
Confidence 88885 46876555 89999988744
No 101
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.42 E-value=7.8e-06 Score=69.66 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=107.4
Q ss_pred ccCCCCCCCCcEEeeeeCCCCceEEcCcc-CCC-eEEEEEEe-----CCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC
Q psy16151 64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDY-YGK-YLVFFFYP-----LDFTFVCPTEILAFNDRLEEFHQINTEVVAASV 136 (299)
Q Consensus 64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~Gk-~vlL~F~~-----~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~ 136 (299)
.|..+..-.+..+. ..+|+ ++|+|+ .|+ -+||+.|+ ..-||.|...+.++......+.++++.+++||.
T Consensus 39 ~LP~v~v~~~Y~F~---g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSr 114 (211)
T PF05988_consen 39 RLPMVEVDKDYVFD---GPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSR 114 (211)
T ss_pred hCCCccCCCCeEEe---CCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeC
Confidence 34445555566664 44555 999996 777 45555554 456999999999998888889999999999999
Q ss_pred CCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCcee--EEEEEeCCCcEEEEEeccCCCCCCHHHH
Q psy16151 137 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLR--GLFIIDRNGVLRQITMNDLPVGRSVDET 214 (299)
Q Consensus 137 d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p--~~~lID~dG~I~~~~~~~~~~g~~~~ev 214 (299)
.+.+.+.+|.+.. ++.||.++.....+...|++..+..+ ..| ++|+-|. |+|...+.. .++..+.+
T Consensus 115 aP~~~i~afk~rm-------GW~~pw~Ss~gs~Fn~D~~~~~~~~~-~~~g~svF~Rdg-~~VfhTyst---~~RG~e~l 182 (211)
T PF05988_consen 115 APLEKIEAFKRRM-------GWTFPWYSSYGSDFNYDFGVSFDEGG-EMPGLSVFLRDG-GRVFHTYST---YGRGGERL 182 (211)
T ss_pred CCHHHHHHHHHhc-------CCCceEEEcCCCcccccccceeccCC-CceeEEEEEEcC-CEEEEEeec---CCCCchhh
Confidence 9999999999987 99999999998889999998654322 223 3555554 777766633 33344444
Q ss_pred HHHHhhccCCCCCCccc
Q psy16151 215 LRLVQAFHDPLRTGAIN 231 (299)
Q Consensus 215 l~~l~~L~~~~~g~~vn 231 (299)
.....-|....+|+...
T Consensus 183 ~~~~~lLDlTP~GR~E~ 199 (211)
T PF05988_consen 183 MPTWNLLDLTPLGRQED 199 (211)
T ss_pred hhHHHHHhcCCCCCCCC
Confidence 44444444555555543
No 102
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.40 E-value=9.4e-07 Score=69.47 Aligned_cols=77 Identities=16% Similarity=0.211 Sum_probs=57.9
Q ss_pred CCCeEEEEEEeC-------CCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeec
Q psy16151 93 YGKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD 165 (299)
Q Consensus 93 ~Gk~vlL~F~~~-------~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D 165 (299)
+|++|+|+|| + +||++|+...|.+.++.+++++ ++.++-|.+|... .| .|
T Consensus 20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~---~w------------------~d 76 (119)
T cd02952 20 EGKPIFILFY-GDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRP---YW------------------RD 76 (119)
T ss_pred CCCeEEEEEE-ccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcc---cc------------------cC
Confidence 5789999999 7 9999999999999999999873 5888888887532 22 23
Q ss_pred CchHHHHHhCCcccCCCCceeEEEEEeCCCcE
Q psy16151 166 LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVL 197 (299)
Q Consensus 166 ~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I 197 (299)
++.++.+.|++. . ..|+.++++..+++
T Consensus 77 ~~~~~~~~~~I~-~----~iPT~~~~~~~~~l 103 (119)
T cd02952 77 PNNPFRTDPKLT-T----GVPTLLRWKTPQRL 103 (119)
T ss_pred cchhhHhccCcc-c----CCCEEEEEcCCcee
Confidence 345777788874 1 36898888544433
No 103
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.37 E-value=2.7e-06 Score=66.38 Aligned_cols=72 Identities=6% Similarity=-0.014 Sum_probs=52.7
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH-
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS- 171 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~- 171 (299)
.++++||.|| ++||++|+...|.+.++.+++++ .+.+..|..|.. ..++
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~----------------------------~~l~~ 77 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWP----------------------------QGKCR 77 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCC----------------------------hHHHH
Confidence 4468888888 99999999999999999999975 366666655432 2344
Q ss_pred HHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
+.|++. ..|+..++ ++|+....+
T Consensus 78 ~~~~I~------~~PTl~lf-~~g~~~~~y 100 (113)
T cd03006 78 KQKHFF------YFPVIHLY-YRSRGPIEY 100 (113)
T ss_pred HhcCCc------ccCEEEEE-ECCccceEE
Confidence 467764 46888888 688865444
No 104
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.36 E-value=2.2e-06 Score=67.81 Aligned_cols=93 Identities=10% Similarity=0.065 Sum_probs=59.7
Q ss_pred eEEcCcc-----CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccce
Q psy16151 86 EIKLSDY-----YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI 160 (299)
Q Consensus 86 ~v~Lsd~-----~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~ 160 (299)
.++..++ .|+.++|+|+ ++|||+|+...|.|.++.++ .++.++-|.+|..... +
T Consensus 10 ~it~~~~~~~i~~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~----~------------- 68 (122)
T TIGR01295 10 VTTVVRALEALDKKETATFFIG-RKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSF----E------------- 68 (122)
T ss_pred ecCHHHHHHHHHcCCcEEEEEE-CCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCc----C-------------
Confidence 4454554 3667888888 99999999999999999887 3577999988742100 0
Q ss_pred eeeecC--chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151 161 PLLSDL--THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND 204 (299)
Q Consensus 161 p~l~D~--~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~ 204 (299)
+.+. -.++.+.|++.... ...|+.+++ ++|+.+....+.
T Consensus 69 --~~~~~~~~~~~~~~~i~~~i--~~~PT~v~~-k~Gk~v~~~~G~ 109 (122)
T TIGR01295 69 --MSSLNDLTAFRSRFGIPTSF--MGTPTFVHI-TDGKQVSVRCGS 109 (122)
T ss_pred --cccHHHHHHHHHHcCCcccC--CCCCEEEEE-eCCeEEEEEeCC
Confidence 0000 02344444432110 135888888 799999887543
No 105
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.36 E-value=2.4e-06 Score=64.75 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=55.3
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
+++++|.|| +.||+.|+...|.+.++.++++. .++.++.+..+.+ ...+++
T Consensus 18 ~~~~~v~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------------------------~~~~~~ 69 (105)
T cd02998 18 KKDVLVEFY-APWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA---------------------------NKDLAK 69 (105)
T ss_pred CCcEEEEEE-CCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc---------------------------chhhHH
Confidence 568999999 99999999999999999999873 3455655554331 236677
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
.|++. ..|+.+++++.|+....+
T Consensus 70 ~~~i~------~~P~~~~~~~~~~~~~~~ 92 (105)
T cd02998 70 KYGVS------GFPTLKFFPKGSTEPVKY 92 (105)
T ss_pred hCCCC------CcCEEEEEeCCCCCcccc
Confidence 88885 568999998777655443
No 106
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.35 E-value=6.2e-06 Score=66.71 Aligned_cols=93 Identities=12% Similarity=0.143 Sum_probs=61.9
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.+++|||.|| ++||++|+...|.|.++.+++++ -+.|+-|.+|. ..+++.
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe----------------------------~~dla~ 71 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQMDEVLASVAETIKN-FAVIYLVDITE----------------------------VPDFNT 71 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCC----------------------------CHHHHH
Confidence 4679999999 99999999999999999998864 25566666653 346677
Q ss_pred HhCCcccCCCCceeEEEEEeCCCc-EEEEEeccCC----CCCCHHHHHHHHhhc
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGV-LRQITMNDLP----VGRSVDETLRLVQAF 221 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~-I~~~~~~~~~----~g~~~~evl~~l~~L 221 (299)
.|++. ..|+++++=++|. .+....+... .-...+++.+.++.+
T Consensus 72 ~y~I~------~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 72 MYELY------DPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred HcCcc------CCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHH
Confidence 78875 2355553447888 5555433211 123455666665544
No 107
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.34 E-value=5.8e-06 Score=62.04 Aligned_cols=85 Identities=16% Similarity=0.298 Sum_probs=61.1
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 173 (299)
+++++|+|| +.||+.|....+.|.++.+++.+ ++.++.|..+. +..+.++
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~----------------------------~~~~~~~ 63 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE----------------------------NPDIAAK 63 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC----------------------------CHHHHHH
Confidence 468999998 99999999999999999888863 57777776542 2345667
Q ss_pred hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151 174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ 219 (299)
Q Consensus 174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~ 219 (299)
|++. ..|+.+++ ++|++.....+. .+.+++.+.++
T Consensus 64 ~~v~------~~P~~~~~-~~g~~~~~~~g~----~~~~~l~~~l~ 98 (101)
T TIGR01068 64 YGIR------SIPTLLLF-KNGKEVDRSVGA----LPKAALKQLIN 98 (101)
T ss_pred cCCC------cCCEEEEE-eCCcEeeeecCC----CCHHHHHHHHH
Confidence 8875 56899999 688887665322 23455555554
No 108
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.32 E-value=9.1e-06 Score=61.26 Aligned_cols=85 Identities=16% Similarity=0.355 Sum_probs=64.6
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 173 (299)
++++||.|| +.||+.|....|.|.++.+++.+ ++.++-|..+. ...+++.
T Consensus 17 ~~~vvv~f~-~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~----------------------------~~~l~~~ 66 (103)
T PF00085_consen 17 DKPVVVYFY-APWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE----------------------------NKELCKK 66 (103)
T ss_dssp SSEEEEEEE-STTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT----------------------------SHHHHHH
T ss_pred CCCEEEEEe-CCCCCccccccceeccccccccc-ccccchhhhhc----------------------------cchhhhc
Confidence 578999998 89999999999999999999987 77777766542 2457778
Q ss_pred hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151 174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ 219 (299)
Q Consensus 174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~ 219 (299)
|++. ..|+.+++ ++|+....+.+. ...+.+.+.|+
T Consensus 67 ~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~ 101 (103)
T PF00085_consen 67 YGVK------SVPTIIFF-KNGKEVKRYNGP----RNAESLIEFIE 101 (103)
T ss_dssp TTCS------SSSEEEEE-ETTEEEEEEESS----SSHHHHHHHHH
T ss_pred cCCC------CCCEEEEE-ECCcEEEEEECC----CCHHHHHHHHH
Confidence 8885 46888888 578777665322 35677776665
No 109
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.31 E-value=5.5e-06 Score=72.34 Aligned_cols=96 Identities=11% Similarity=0.141 Sum_probs=65.1
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 173 (299)
+++++|.|| +.||++|+...|.+.++++++++ .+.+..|..+ .+..+++.
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~----------------------------~~~~l~~~ 101 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRKMAPAWERLAKALKG-QVNVADLDAT----------------------------RALNLAKR 101 (224)
T ss_pred CCCEEEEEE-CCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCc----------------------------ccHHHHHH
Confidence 578999999 99999999999999999998874 2333333221 23467888
Q ss_pred hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCCCCCCcc
Q psy16151 174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAI 230 (299)
Q Consensus 174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~~~g~~v 230 (299)
|++. ..|++++++ +|+++.... .....+++.+.+.+.-....+.++
T Consensus 102 ~~I~------~~PTl~~f~-~G~~v~~~~----G~~s~e~L~~fi~~~~~~~~~~~~ 147 (224)
T PTZ00443 102 FAIK------GYPTLLLFD-KGKMYQYEG----GDRSTEKLAAFALGDFKKALGAPV 147 (224)
T ss_pred cCCC------cCCEEEEEE-CCEEEEeeC----CCCCHHHHHHHHHHHHHhhcCCCC
Confidence 9986 568999997 788765431 124566666666554333333443
No 110
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.31 E-value=3.5e-06 Score=74.75 Aligned_cols=85 Identities=16% Similarity=0.260 Sum_probs=63.8
Q ss_pred EcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCc
Q psy16151 88 KLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 167 (299)
Q Consensus 88 ~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~ 167 (299)
.+.++..++-|++|+. +-||.|....|.++.+.+++ |+.|++||+|... ...||..- ++
T Consensus 144 ~i~~la~~~gL~fFy~-~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~----------------~p~fp~~~-~d 202 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYR-GKSPISQKMAPVIQAFAKEY---GISVIPISVDGTL----------------IPGLPNSR-SD 202 (256)
T ss_pred HHHHHHhceeEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------CCCCCCcc-CC
Confidence 4456677899999995 45999999999999998876 7999999999641 11233322 25
Q ss_pred hHHHHHhCCcccCCCCceeEEEEEeCCCcEEE
Q psy16151 168 HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQ 199 (299)
Q Consensus 168 ~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~ 199 (299)
...++.+|+. ..|++||++++.+...
T Consensus 203 ~gqa~~l~v~------~~Pal~Lv~~~t~~~~ 228 (256)
T TIGR02739 203 SGQAQHLGVK------YFPALYLVNPKSQKMS 228 (256)
T ss_pred hHHHHhcCCc------cCceEEEEECCCCcEE
Confidence 6678899986 4699999999954433
No 111
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.30 E-value=4.2e-06 Score=62.37 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=54.7
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh-hcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS 171 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~-~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~ 171 (299)
++++++|.|| +.||+.|....+.+.++.+.++ ..++.++.|+.+. +..+.
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------------~~~~~ 64 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA----------------------------NNDLC 64 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc----------------------------hHHHH
Confidence 4458999998 8999999999999999988885 3355555554332 34667
Q ss_pred HHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
+.|++. ..|+.++++++|+....+
T Consensus 65 ~~~~i~------~~Pt~~~~~~~~~~~~~~ 88 (101)
T cd02961 65 SEYGVR------GYPTIKLFPNGSKEPVKY 88 (101)
T ss_pred HhCCCC------CCCEEEEEcCCCcccccC
Confidence 778885 568999998887544443
No 112
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.29 E-value=1.1e-05 Score=63.86 Aligned_cols=100 Identities=7% Similarity=-0.129 Sum_probs=57.6
Q ss_pred cCCCeEEEEEEeCCCCCCchhhHHH-H--HHHHHHHhhcCcEEEEEeCCCHHhHH-HHhhcccccCCCCccceeeeecCc
Q psy16151 92 YYGKYLVFFFYPLDFTFVCPTEILA-F--NDRLEEFHQINTEVVAASVDSHFTHL-AWVNTPRKEGGLGKLKIPLLSDLT 167 (299)
Q Consensus 92 ~~Gk~vlL~F~~~~~cp~C~~~~~~-l--~~l~~~~~~~gv~vi~Vs~d~~~~~~-~~~~~~~~~~~~~~~~~p~l~D~~ 167 (299)
-.+|+|+|+|+ ++||+.|+..-.. + .++.+.+. +++.+|-|..+...+.. .+.+
T Consensus 13 ~~~KpVll~f~-a~WC~~Ck~me~~~f~~~~V~~~l~-~~fv~VkvD~~~~~~~~~~~~~-------------------- 70 (124)
T cd02955 13 REDKPIFLSIG-YSTCHWCHVMEHESFEDEEVAAILN-ENFVPIKVDREERPDVDKIYMN-------------------- 70 (124)
T ss_pred HcCCeEEEEEc-cCCCHhHHHHHHHccCCHHHHHHHh-CCEEEEEEeCCcCcHHHHHHHH--------------------
Confidence 36789999987 9999999866542 2 23444443 24555544443211111 1110
Q ss_pred hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccC----CCCCCHHHHHHHHhh
Q psy16151 168 HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDL----PVGRSVDETLRLVQA 220 (299)
Q Consensus 168 ~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~----~~g~~~~evl~~l~~ 220 (299)
.....||+. ..|+++++|++|++++...+-. ..+....++++.++.
T Consensus 71 -~~~~~~~~~------G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd02955 71 -AAQAMTGQG------GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE 120 (124)
T ss_pred -HHHHhcCCC------CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence 111234553 4689999999999998874321 123356666666654
No 113
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.27 E-value=5.6e-06 Score=64.59 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=65.5
Q ss_pred HHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCC---------------
Q psy16151 117 FNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ--------------- 181 (299)
Q Consensus 117 l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~--------------- 181 (299)
|.+..+++++.|+.+++|+.++.+..++|.+.. .+++|++.|++.++.+++|+.....
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~-------~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~ 74 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELT-------GFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNI 74 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhcc-------CCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHH
Confidence 567788898999999999999997799999775 8999999999999999999874210
Q ss_pred ---------------C--CceeEEEEEeCCCcEEEEEe
Q psy16151 182 ---------------G--HTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 182 ---------------g--~~~p~~~lID~dG~I~~~~~ 202 (299)
| .....+||+|++|+|++.|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 75 VQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 0 11246899999999999985
No 114
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.27 E-value=8.3e-06 Score=63.57 Aligned_cols=85 Identities=16% Similarity=0.172 Sum_probs=54.9
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 173 (299)
++.++++|| +.||++|....|.+.++.+++ ..+.+.-|..|. ..+++++
T Consensus 22 ~~~vvv~f~-a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~----------------------------~~~l~~~ 70 (113)
T cd02975 22 PVDLVVFSS-KEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDE----------------------------DKEKAEK 70 (113)
T ss_pred CeEEEEEeC-CCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCc----------------------------CHHHHHH
Confidence 345666666 999999999999999988775 246666665542 2357778
Q ss_pred hCCcccCCCCceeEEEEEeCC---CcEEEEEeccCCCCCCHHHHHHHH
Q psy16151 174 YGVYLSDQGHTLRGLFIIDRN---GVLRQITMNDLPVGRSVDETLRLV 218 (299)
Q Consensus 174 ~gv~~~~~g~~~p~~~lID~d---G~I~~~~~~~~~~g~~~~evl~~l 218 (299)
|++. ..|+.++.+.. |.++.. +...+..+.++++.+
T Consensus 71 ~~v~------~vPt~~i~~~g~~~~~~~~~---G~~~~~el~~~i~~i 109 (113)
T cd02975 71 YGVE------RVPTTIFLQDGGKDGGIRYY---GLPAGYEFASLIEDI 109 (113)
T ss_pred cCCC------cCCEEEEEeCCeecceEEEE---ecCchHHHHHHHHHH
Confidence 8986 56898888653 344322 333343444444443
No 115
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.24 E-value=8.1e-06 Score=63.73 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=49.0
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc-C-cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI-N-TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS 171 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~-g-v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~ 171 (299)
+++++|.|| ++||++|....|.+.++.+++++. + +.+..|..+. |....++
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~--------------------------~~~~~~~ 71 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCAD--------------------------EENVALC 71 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccc--------------------------hhhHHHH
Confidence 368999999 999999999999999999988642 2 3343333221 1234667
Q ss_pred HHhCCcccCCCCceeEEEEEeCCC
Q psy16151 172 LDYGVYLSDQGHTLRGLFIIDRNG 195 (299)
Q Consensus 172 ~~~gv~~~~~g~~~p~~~lID~dG 195 (299)
+.|++. ..|+.+++.+..
T Consensus 72 ~~~~i~------~~Pt~~lf~~~~ 89 (114)
T cd02992 72 RDFGVT------GYPTLRYFPPFS 89 (114)
T ss_pred HhCCCC------CCCEEEEECCCC
Confidence 788885 468999995444
No 116
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.6e-06 Score=75.06 Aligned_cols=74 Identities=9% Similarity=0.184 Sum_probs=59.6
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
+-+|||++|| +.||++|..-+|.|.++..+++. .+.+.-|++ |.+..++.
T Consensus 42 ~~~PVlV~fW-ap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~----------------------------D~~p~vAa 91 (304)
T COG3118 42 REVPVLVDFW-APWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNC----------------------------DAEPMVAA 91 (304)
T ss_pred cCCCeEEEec-CCCCchHHHHHHHHHHHHHHhCC-ceEEEEecC----------------------------CcchhHHH
Confidence 5579999999 99999999999999999999875 344444443 33567888
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
+|||. .+|++|++ +||+-+.-+.+
T Consensus 92 qfgiq------sIPtV~af-~dGqpVdgF~G 115 (304)
T COG3118 92 QFGVQ------SIPTVYAF-KDGQPVDGFQG 115 (304)
T ss_pred HhCcC------cCCeEEEe-eCCcCccccCC
Confidence 99996 78999999 89999877743
No 117
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.22 E-value=1.1e-05 Score=62.56 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=56.7
Q ss_pred CCCeEEEEEEeCCC--CCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151 93 YGKYLVFFFYPLDF--TFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 170 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~--cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~ 170 (299)
.|.++||.|| +.| ||.|....|.|.++.+++.+ .+.++-|..|+ +.++
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~----------------------------~~~l 75 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRAD----------------------------EQAL 75 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCC----------------------------CHHH
Confidence 5667888888 776 99999999999999998874 24444444432 3578
Q ss_pred HHHhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
+..|+|. ..|+.+++ ++|+++....+
T Consensus 76 a~~f~V~------sIPTli~f-kdGk~v~~~~G 101 (111)
T cd02965 76 AARFGVL------RTPALLFF-RDGRYVGVLAG 101 (111)
T ss_pred HHHcCCC------cCCEEEEE-ECCEEEEEEeC
Confidence 8889986 57888888 79999988743
No 118
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.22 E-value=5.6e-06 Score=82.04 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=65.2
Q ss_pred CccCCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecC
Q psy16151 90 SDYYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 166 (299)
Q Consensus 90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 166 (299)
+..+||+|+|+|| ++||++|+..-+.. .++.++++ ++.++-|.+++.+ +.
T Consensus 470 a~~~gK~VlVdF~-A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~------------------------~~ 522 (571)
T PRK00293 470 AKGKGKPVMLDLY-ADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANN------------------------AE 522 (571)
T ss_pred HHhcCCcEEEEEE-CCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCC------------------------hh
Confidence 3346899999999 99999999776553 45555554 5666666654321 11
Q ss_pred chHHHHHhCCcccCCCCceeEEEEEeCCCcEEE--EEeccCCCCCCHHHHHHHHhhc
Q psy16151 167 THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQ--ITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 167 ~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~--~~~~~~~~g~~~~evl~~l~~L 221 (299)
+.++.++|++. ..|+++++|+||+++. +..+ ..+.+++.+.++.+
T Consensus 523 ~~~l~~~~~v~------g~Pt~~~~~~~G~~i~~~r~~G----~~~~~~f~~~L~~~ 569 (571)
T PRK00293 523 DVALLKHYNVL------GLPTILFFDAQGQEIPDARVTG----FMDAAAFAAHLRQL 569 (571)
T ss_pred hHHHHHHcCCC------CCCEEEEECCCCCCcccccccC----CCCHHHHHHHHHHh
Confidence 35677888886 4689999999999853 3312 23567777777764
No 119
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.20 E-value=1.1e-05 Score=62.81 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=53.2
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 173 (299)
++++||.|| +.||++|....|.+.++.+++. ++.++-|..+. . .+++.
T Consensus 24 ~~~vvv~F~-a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~----------------------------~-~l~~~ 71 (113)
T cd02957 24 GTRVVVHFY-EPGFPRCKILDSHLEELAAKYP--ETKFVKINAEK----------------------------A-FLVNY 71 (113)
T ss_pred CCEEEEEEe-CCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchh----------------------------h-HHHHh
Confidence 478999998 9999999999999999998875 45444443321 1 45667
Q ss_pred hCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
|++. ..|+.+++ ++|+++....+
T Consensus 72 ~~i~------~~Pt~~~f-~~G~~v~~~~G 94 (113)
T cd02957 72 LDIK------VLPTLLVY-KNGELIDNIVG 94 (113)
T ss_pred cCCC------cCCEEEEE-ECCEEEEEEec
Confidence 7775 56887777 78999988764
No 120
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.19 E-value=2.4e-05 Score=60.94 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=56.3
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
.+++|+|.|| +.||++|....|.|.++.+++. ++.++-|..|. ...+++
T Consensus 21 ~~~~vvV~f~-a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~----------------------------~~~l~~ 69 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEK----------------------------APFLVE 69 (113)
T ss_pred CCCcEEEEEE-CCCCccHHHHHHHHHHHHHHcC--CCEEEEEEccc----------------------------CHHHHH
Confidence 3568999998 9999999999999999988875 45565554432 235777
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMND 204 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~ 204 (299)
+|++. ..|+.+++ ++|+++.+..+.
T Consensus 70 ~~~v~------~vPt~l~f-k~G~~v~~~~g~ 94 (113)
T cd02989 70 KLNIK------VLPTVILF-KNGKTVDRIVGF 94 (113)
T ss_pred HCCCc------cCCEEEEE-ECCEEEEEEECc
Confidence 88886 56888888 689998877543
No 121
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.17 E-value=2.1e-05 Score=59.47 Aligned_cols=84 Identities=14% Similarity=0.219 Sum_probs=56.5
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 173 (299)
+++++|.|| +.||++|+...|.+.++.+++.. .+.++.+..+. +..+++.
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~----------------------------~~~~~~~ 67 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADV----------------------------HQSLAQQ 67 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcc----------------------------hHHHHHH
Confidence 456899998 99999999999999999988764 45666554432 3456778
Q ss_pred hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHH
Q psy16151 174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRL 217 (299)
Q Consensus 174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~ 217 (299)
|++. ..|+.++++ +|+.....+. .+.+.+++.+.
T Consensus 68 ~~i~------~~P~~~~~~-~~~~~~~~~~---g~~~~~~l~~~ 101 (103)
T cd03001 68 YGVR------GFPTIKVFG-AGKNSPQDYQ---GGRTAKAIVSA 101 (103)
T ss_pred CCCC------ccCEEEEEC-CCCcceeecC---CCCCHHHHHHH
Confidence 8885 468999996 4433322211 23455555443
No 122
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.15 E-value=1.4e-05 Score=69.56 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=65.8
Q ss_pred EEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecC
Q psy16151 87 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 166 (299)
Q Consensus 87 v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 166 (299)
-.+.++.+++-|++|+ .+.|+.|....|.|..+.+++ |+.|+.||+|... ...||-...
T Consensus 113 ~~l~~la~~~gL~~F~-~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~----------------~~~fp~~~~- 171 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFY-RSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRP----------------IPSFPNPRP- 171 (215)
T ss_pred HHHHHHhhCeEEEEEE-cCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCC----------------CcCCCCCCC-
Confidence 3456667889999998 456999999999999998887 8999999999632 112222211
Q ss_pred chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 167 THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 167 ~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
+..+++.+|+. ..|++||+++++......
T Consensus 172 ~~g~~~~l~v~------~~Pal~Lv~~~~~~~~pv 200 (215)
T PF13728_consen 172 DPGQAKRLGVK------VTPALFLVNPNTKKWYPV 200 (215)
T ss_pred CHHHHHHcCCC------cCCEEEEEECCCCeEEEE
Confidence 56788899995 579999999998444443
No 123
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.15 E-value=2.5e-05 Score=61.55 Aligned_cols=85 Identities=4% Similarity=0.004 Sum_probs=57.3
Q ss_pred eEEEEEEeCCCCCC--ch--hhHHHHHHHHHHH-hhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151 96 YLVFFFYPLDFTFV--CP--TEILAFNDRLEEF-HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 170 (299)
Q Consensus 96 ~vlL~F~~~~~cp~--C~--~~~~~l~~l~~~~-~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~ 170 (299)
++|++|| ++||++ |+ ...|.+.++..++ ++.++.+.-|.+|. +.++
T Consensus 29 ~vvv~f~-a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~----------------------------~~~L 79 (120)
T cd03065 29 LCLLYHE-PVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK----------------------------DAKV 79 (120)
T ss_pred eEEEEEC-CCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC----------------------------CHHH
Confidence 5566665 899987 99 6677777777776 34466666665542 4578
Q ss_pred HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
++.|||. ..|+.+++ +||+++. + .+. ...+.+...++.+
T Consensus 80 a~~~~I~------~iPTl~lf-k~G~~v~-~-~G~---~~~~~l~~~l~~~ 118 (120)
T cd03065 80 AKKLGLD------EEDSIYVF-KDDEVIE-Y-DGE---FAADTLVEFLLDL 118 (120)
T ss_pred HHHcCCc------cccEEEEE-ECCEEEE-e-eCC---CCHHHHHHHHHHH
Confidence 8889996 57899888 6999775 3 222 2456666666543
No 124
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.14 E-value=1.2e-05 Score=71.04 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=69.5
Q ss_pred cCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151 89 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH 168 (299)
Q Consensus 89 Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 168 (299)
++++..++-|++|+.+ -||.|....|.|+.+.+++ |+.|++||+|..- ...||.. -++.
T Consensus 138 i~~la~~~GL~fFy~s-~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~~----------------~p~fp~~-~~d~ 196 (248)
T PRK13703 138 IAKLAEHYGLMFFYRG-QDPIDGQLAQVINDFRDTY---GLSVIPVSVDGVI----------------NPLLPDS-RTDQ 196 (248)
T ss_pred HHHHHhcceEEEEECC-CCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC----------------CCCCCCC-ccCh
Confidence 5566778999999955 5999999999999998876 7999999999641 1123332 1244
Q ss_pred HHHHHhCCcccCCCCceeEEEEEeCCC-cEEEEEeccCCCCCCHHHHHHHHh
Q psy16151 169 KISLDYGVYLSDQGHTLRGLFIIDRNG-VLRQITMNDLPVGRSVDETLRLVQ 219 (299)
Q Consensus 169 ~~~~~~gv~~~~~g~~~p~~~lID~dG-~I~~~~~~~~~~g~~~~evl~~l~ 219 (299)
..++.+|+. ..|++||++++. ++.-+..+.+ ..+++.+-+.
T Consensus 197 gqa~~l~v~------~~PAl~Lv~~~t~~~~pv~~G~i----S~deL~~Ri~ 238 (248)
T PRK13703 197 GQAQRLGVK------YFPALMLVDPKSGSVRPLSYGFI----TQDDLAKRFL 238 (248)
T ss_pred hHHHhcCCc------ccceEEEEECCCCcEEEEeeccC----CHHHHHHHHH
Confidence 566889985 469999999996 5554443332 3445544443
No 125
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.12 E-value=2e-05 Score=75.68 Aligned_cols=93 Identities=12% Similarity=0.169 Sum_probs=66.2
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
+++++||+|| +.||++|....|.|.++.+++++.++.++.|.+|... .....+
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--------------------------~~~~~~ 422 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--------------------------KEFAKQ 422 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--------------------------cHHHHH
Confidence 6788999999 9999999999999999999998777888888777421 011234
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
.|+|. ..|+.+++. +|....+.+. ...++.+.++..++.|
T Consensus 423 ~~~I~------~~PTii~Fk-~g~~~~~~Y~--~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 423 ELQLG------SFPTILFFP-KHSSRPIKYP--SEKRDVDSLMSFVNLL 462 (463)
T ss_pred HcCCC------ccceEEEEE-CCCCCceeCC--CCCCCHHHHHHHHHhh
Confidence 56775 468988885 4442222211 1346788888888765
No 126
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.08 E-value=4.8e-05 Score=55.38 Aligned_cols=70 Identities=20% Similarity=0.318 Sum_probs=52.1
Q ss_pred CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHh
Q psy16151 95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 174 (299)
Q Consensus 95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~ 174 (299)
++++|+|| +.||+.|....+.+.++.++ ..++.++.++.+. ...+.+.|
T Consensus 11 ~~~ll~~~-~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~----------------------------~~~~~~~~ 59 (93)
T cd02947 11 KPVVVDFW-APWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE----------------------------NPELAEEY 59 (93)
T ss_pred CcEEEEEE-CCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC----------------------------ChhHHHhc
Confidence 67888888 89999999999999998877 4467777776553 23456667
Q ss_pred CCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151 175 GVYLSDQGHTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 175 gv~~~~~g~~~p~~~lID~dG~I~~~~~ 202 (299)
++. ..|+.+++ ++|+++..+.
T Consensus 60 ~v~------~~P~~~~~-~~g~~~~~~~ 80 (93)
T cd02947 60 GVR------SIPTFLFF-KNGKEVDRVV 80 (93)
T ss_pred Ccc------cccEEEEE-ECCEEEEEEe
Confidence 775 45788877 5777776663
No 127
>PLN02309 5'-adenylylsulfate reductase
Probab=97.97 E-value=6.1e-05 Score=72.30 Aligned_cols=92 Identities=14% Similarity=0.269 Sum_probs=65.0
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
+++++||+|| +.||++|....|.+.++.+++...++.++.|+.|.. +..+++
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~---------------------------~~~la~ 415 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD---------------------------QKEFAK 415 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---------------------------chHHHH
Confidence 5788999998 999999999999999999999877788888877621 112332
Q ss_pred -HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 173 -DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 173 -~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
.|+|. ..|+.+++.+... ..+.+. ...++.+.++..++++
T Consensus 416 ~~~~I~------~~PTil~f~~g~~-~~v~Y~--~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 416 QELQLG------SFPTILLFPKNSS-RPIKYP--SEKRDVDSLLSFVNSL 456 (457)
T ss_pred hhCCCc------eeeEEEEEeCCCC-CeeecC--CCCcCHHHHHHHHHHh
Confidence 46764 5688888854332 222211 1246788888888765
No 128
>PTZ00062 glutaredoxin; Provisional
Probab=97.95 E-value=8.6e-05 Score=63.87 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=73.2
Q ss_pred eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhC
Q psy16151 96 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG 175 (299)
Q Consensus 96 ~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~g 175 (299)
.+|++|| ++|||.|....+.|.++.++|. .+.++-|..| |+
T Consensus 19 ~~vl~f~-a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d------------------------------------~~ 59 (204)
T PTZ00062 19 KLVLYVK-SSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA------------------------------------DA 59 (204)
T ss_pred cEEEEEe-CCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc------------------------------------cC
Confidence 4777777 9999999999999999999885 3555555322 66
Q ss_pred CcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCCCCCC-------------ccccccceecc--c
Q psy16151 176 VYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTG-------------AINGLSLLVIG--L 240 (299)
Q Consensus 176 v~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~~~g~-------------~vn~ast~~~~--~ 240 (299)
|. ..|+.+++ ++|+++.+.. |.+..++...+..+.....+. +|=.-+.|.+- .
T Consensus 60 V~------~vPtfv~~-~~g~~i~r~~-----G~~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~ 127 (204)
T PTZ00062 60 NN------EYGVFEFY-QNSQLINSLE-----GCNTSTLVSFIRGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTFPF 127 (204)
T ss_pred cc------cceEEEEE-ECCEEEeeee-----CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCCCC
Confidence 64 56888888 6999988873 345666666666554432211 11111343321 2
Q ss_pred eechHHHHHHHhhcCceEE
Q psy16151 241 FQVTEKTCDILEDHGVTCE 259 (299)
Q Consensus 241 i~~s~~~~~~L~~~~~~~~ 259 (299)
..-+..+.++|..+++..+
T Consensus 128 C~~C~~~k~~L~~~~i~y~ 146 (204)
T PTZ00062 128 CRFSNAVVNMLNSSGVKYE 146 (204)
T ss_pred ChhHHHHHHHHHHcCCCEE
Confidence 2335667888888775544
No 129
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.86 E-value=0.00023 Score=51.38 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=29.7
Q ss_pred EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151 98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 137 (299)
Q Consensus 98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d 137 (299)
|..|| +.||++|....+.|.++.++++. .+.++-|..+
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~ 40 (82)
T TIGR00411 3 IELFT-SPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVM 40 (82)
T ss_pred EEEEE-CCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCc
Confidence 45566 99999999999999999988864 3666666553
No 130
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.85 E-value=7.2e-05 Score=62.94 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=54.1
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 173 (299)
+++|||+|| +.||++|....|.|.++.+++. ++.++-|.++.. .++..
T Consensus 83 ~~~VVV~Fy-a~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~-----------------------------~l~~~ 130 (175)
T cd02987 83 DTTVVVHIY-EPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT-----------------------------GASDE 130 (175)
T ss_pred CcEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch-----------------------------hhHHh
Confidence 358999998 9999999999999999998885 466666655421 34455
Q ss_pred hCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151 174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMND 204 (299)
Q Consensus 174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~ 204 (299)
|++. ..|+.+|+ ++|+++....+.
T Consensus 131 f~v~------~vPTllly-k~G~~v~~~vG~ 154 (175)
T cd02987 131 FDTD------ALPALLVY-KGGELIGNFVRV 154 (175)
T ss_pred CCCC------CCCEEEEE-ECCEEEEEEech
Confidence 6664 46888888 799999877643
No 131
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.83 E-value=0.00026 Score=57.72 Aligned_cols=142 Identities=10% Similarity=0.086 Sum_probs=83.7
Q ss_pred CCCCCCCCcEEeee-------eCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHH-HhhcCcEEEEE-eC
Q psy16151 66 LVSKPAPFWQGTAV-------VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEE-FHQINTEVVAA-SV 136 (299)
Q Consensus 66 ~~G~~aPdF~L~~~-------~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~-~~~~gv~vi~V-s~ 136 (299)
..|+++|..++.+- .+.+.++.+.+++.||+-||....+. ...-....|-+..+.+. |.....+..+| +.
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr-~sake~N~~l~~aik~a~f~~d~yqtttIiN~ 80 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGR-SSAKEMNAPLIEAIKAAKFPHDKYQTTTIINL 80 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccC-CchhHhhHHHHHHHHHcCCCccceeEEEEEec
Confidence 46888888776531 01123556667789996666665333 33333334444444444 55555666555 55
Q ss_pred CC-----HHhHHHHhhcccccCCCCcccee-eeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCC
Q psy16151 137 DS-----HFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRS 210 (299)
Q Consensus 137 d~-----~~~~~~~~~~~~~~~~~~~~~~p-~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~ 210 (299)
|+ ..-.+..++..++ .++|. ++.|.++.+.++|++... .-+.+|+|++|+|++...+.. ...+
T Consensus 81 dDAi~gt~~fVrss~e~~kk-----~~p~s~~vlD~~G~~~~aW~L~~~-----~SaiiVlDK~G~V~F~k~G~L-s~~E 149 (160)
T PF09695_consen 81 DDAIWGTGGFVRSSAEDSKK-----EFPWSQFVLDSNGVVRKAWQLQEE-----SSAIIVLDKQGKVQFVKEGAL-SPAE 149 (160)
T ss_pred ccccccchHHHHHHHHHhhh-----hCCCcEEEEcCCCceeccccCCCC-----CceEEEEcCCccEEEEECCCC-CHHH
Confidence 54 1112333333211 45665 579999999999999632 246889999999999984443 3334
Q ss_pred HHHHHHHHh
Q psy16151 211 VDETLRLVQ 219 (299)
Q Consensus 211 ~~evl~~l~ 219 (299)
..++++.++
T Consensus 150 v~qVi~Ll~ 158 (160)
T PF09695_consen 150 VQQVIALLK 158 (160)
T ss_pred HHHHHHHHh
Confidence 555655554
No 132
>PTZ00102 disulphide isomerase; Provisional
Probab=97.82 E-value=0.00014 Score=70.40 Aligned_cols=92 Identities=10% Similarity=0.099 Sum_probs=64.4
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC-cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN-TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKIS 171 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g-v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~ 171 (299)
.||.|+|+|| +.||++|+...|.+.++.+.+++.+ +.+.-+..+.. ...+
T Consensus 374 ~~k~vlv~f~-a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~----------------------------~~~~ 424 (477)
T PTZ00102 374 SDKDVLLEIY-APWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN----------------------------ETPL 424 (477)
T ss_pred CCCCEEEEEE-CCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC----------------------------ccch
Confidence 5789999999 9999999999999999998887643 44444443321 1234
Q ss_pred HHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151 172 LDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD 223 (299)
Q Consensus 172 ~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~ 223 (299)
+.|++. ..|+.+++++++++...+.+ ....+.+.+.+.....
T Consensus 425 ~~~~v~------~~Pt~~~~~~~~~~~~~~~G----~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 425 EEFSWS------AFPTILFVKAGERTPIPYEG----ERTVEGFKEFVNKHAT 466 (477)
T ss_pred hcCCCc------ccCeEEEEECCCcceeEecC----cCCHHHHHHHHHHcCC
Confidence 456664 46899999988876444422 3467788888777654
No 133
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=97.81 E-value=1.5e-05 Score=67.10 Aligned_cols=53 Identities=34% Similarity=0.401 Sum_probs=44.5
Q ss_pred CCccccc----cceeccceechHHHHHHHh-hcCceEEecceeeecccceeEEEEEEc
Q psy16151 227 TGAINGL----SLLVIGLFQVTEKTCDILE-DHGVTCELRGRTFIKGKGLITTYFIRQ 279 (299)
Q Consensus 227 g~~vn~a----st~~~~~i~~s~~~~~~L~-~~~~~~~~rg~~~~k~~~~~~t~~~~~ 279 (299)
|++||.| +...++.+.+|+++++.|. ...|.++.+|.+.+|||+.+.||||.|
T Consensus 127 G~~vn~Aarl~~~a~~~~i~vs~~v~~~l~~~~~~~~~~~g~~~lkG~~~~~~y~~~~ 184 (184)
T PF00211_consen 127 GDAVNIAARLESLAPPGQILVSEEVYDALNESDQFRFEELGRVELKGKGPVQTYQLNG 184 (184)
T ss_dssp SHHHHHHHHHHHTSSTTSEEEEHHHHHHHTTHTTEEEEEEEEEEETTSSEEEEEEEE-
T ss_pred ehhhhhhHHHHHhhcccccccCHHHHHHhcccCceEEEEeeeEEEecCCCcEEEEEEC
Confidence 4555555 4456788999999999998 567999999999999999999999985
No 134
>PTZ00102 disulphide isomerase; Provisional
Probab=97.76 E-value=0.00018 Score=69.64 Aligned_cols=92 Identities=15% Similarity=0.286 Sum_probs=64.0
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
+++.++|.|| +.||++|....|.+.++.+.+++.+..+....+| ++.+..+++
T Consensus 48 ~~~~~lv~f~-a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd--------------------------~~~~~~l~~ 100 (477)
T PTZ00102 48 ENEIVLVKFY-APWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVD--------------------------ATEEMELAQ 100 (477)
T ss_pred cCCcEEEEEE-CCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEE--------------------------CCCCHHHHH
Confidence 4678888888 9999999999999999988886544333333333 122456888
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD 223 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~ 223 (299)
+|++. ..|+.++++..+.+ .+ . ..++.+.+.+.+..+..
T Consensus 101 ~~~i~------~~Pt~~~~~~g~~~--~y-~---g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 101 EFGVR------GYPTIKFFNKGNPV--NY-S---GGRTADGIVSWIKKLTG 139 (477)
T ss_pred hcCCC------cccEEEEEECCceE--Ee-c---CCCCHHHHHHHHHHhhC
Confidence 89985 56899999755444 32 2 23467788888777643
No 135
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.71 E-value=0.00029 Score=61.21 Aligned_cols=91 Identities=12% Similarity=0.115 Sum_probs=59.1
Q ss_pred cCCCeEEEEEEe--CCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151 92 YYGKYLVFFFYP--LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 169 (299)
Q Consensus 92 ~~Gk~vlL~F~~--~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 169 (299)
.++...++.|+. +.||++|....|.+.++.+++. ++++..+.+|.. ...+
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd~~--------------------------~~~~ 68 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFDTP--------------------------EDKE 68 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecCCc--------------------------ccHH
Confidence 344445656663 3999999999999999988884 455655655532 2457
Q ss_pred HHHHhCCcccCCCCceeEEEEEeCCCcEEE-EEeccCCCCCCHHHHHHHH
Q psy16151 170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQ-ITMNDLPVGRSVDETLRLV 218 (299)
Q Consensus 170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~-~~~~~~~~g~~~~evl~~l 218 (299)
+++.|++. ..|+.++++ +|+.+. ++.+ ......+..+++.+
T Consensus 69 l~~~~~V~------~~Pt~~~f~-~g~~~~~~~~G-~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 69 EAEKYGVE------RVPTTIILE-EGKDGGIRYTG-IPAGYEFAALIEDI 110 (215)
T ss_pred HHHHcCCC------ccCEEEEEe-CCeeeEEEEee-cCCHHHHHHHHHHH
Confidence 88899986 568888885 677764 4433 33333344444444
No 136
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.71 E-value=0.00024 Score=68.18 Aligned_cols=90 Identities=16% Similarity=0.243 Sum_probs=62.8
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcC--cEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN--TEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 170 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~g--v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~ 170 (299)
++++++|.|| +.||++|....|.+.++++.+++.+ +.+..|..+ .+.++
T Consensus 17 ~~~~~~v~f~-a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----------------------------~~~~l 67 (462)
T TIGR01130 17 SHEFVLVEFY-APWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT----------------------------EEKDL 67 (462)
T ss_pred cCCCEEEEEE-CCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC----------------------------CcHHH
Confidence 4678888888 9999999999999999999888665 444444332 23467
Q ss_pred HHHhCCcccCCCCceeEEEEEeCCCcE-EEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151 171 SLDYGVYLSDQGHTLRGLFIIDRNGVL-RQITMNDLPVGRSVDETLRLVQAFH 222 (299)
Q Consensus 171 ~~~~gv~~~~~g~~~p~~~lID~dG~I-~~~~~~~~~~g~~~~evl~~l~~L~ 222 (299)
++.|++. ..|+.+++ ++|+. +..+.+ ..+.+.+.+.+....
T Consensus 68 ~~~~~i~------~~Pt~~~~-~~g~~~~~~~~g----~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 68 AQKYGVS------GYPTLKIF-RNGEDSVSDYNG----PRDADGIVKYMKKQS 109 (462)
T ss_pred HHhCCCc------cccEEEEE-eCCccceeEecC----CCCHHHHHHHHHHhc
Confidence 7888886 46887777 57776 444422 235667777766554
No 137
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.67 E-value=0.00026 Score=60.50 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=53.4
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 173 (299)
+++|||.|| +.||++|....|.|.++..+|. .+.++-|.++.. ...
T Consensus 102 ~~~VVV~Fy-a~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~~-------------------------------~~~ 147 (192)
T cd02988 102 DTWVVVHLY-KDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQC-------------------------------IPN 147 (192)
T ss_pred CCEEEEEEE-CCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHHh-------------------------------Hhh
Confidence 458999998 9999999999999999999985 467766655410 124
Q ss_pred hCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151 174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMND 204 (299)
Q Consensus 174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~ 204 (299)
|++. ..|+.+++ ++|+++....+.
T Consensus 148 ~~i~------~lPTlliy-k~G~~v~~ivG~ 171 (192)
T cd02988 148 YPDK------NLPTILVY-RNGDIVKQFIGL 171 (192)
T ss_pred CCCC------CCCEEEEE-ECCEEEEEEeCc
Confidence 5553 46888888 799999888654
No 138
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.67 E-value=9.1e-05 Score=55.93 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=34.5
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCC
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVD 137 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d 137 (299)
+++++|+|| ++||++|....|.+.++.+.+++ ..+.+..|..+
T Consensus 18 ~~~~~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCcEEEEEE-CCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 578899998 99999999999999999998876 34555555443
No 139
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.63 E-value=0.00053 Score=53.26 Aligned_cols=91 Identities=15% Similarity=0.167 Sum_probs=55.4
Q ss_pred cCCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151 92 YYGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH 168 (299)
Q Consensus 92 ~~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 168 (299)
-++|+++|+|+ +.||+.|....... .++.+.+.+ .+..+.+.++++ ...
T Consensus 15 ~~~K~llv~~~-~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~--------------------------e~~ 66 (114)
T cd02958 15 SEKKWLLVYLQ-SEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSS--------------------------EGQ 66 (114)
T ss_pred hhCceEEEEEe-cCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCc--------------------------cHH
Confidence 35789999998 99999997654321 112222221 233333332221 123
Q ss_pred HHHHHhCCcccCCCCceeEEEEEeC-CCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151 169 KISLDYGVYLSDQGHTLRGLFIIDR-NGVLRQITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 169 ~~~~~~gv~~~~~g~~~p~~~lID~-dG~I~~~~~~~~~~g~~~~evl~~l~~ 220 (299)
+++..|++. ..|+.++||+ +|+++.+..+.. ..++++..++.
T Consensus 67 ~~~~~~~~~------~~P~~~~i~~~~g~~l~~~~G~~----~~~~f~~~L~~ 109 (114)
T cd02958 67 RFLQSYKVD------KYPHIAIIDPRTGEVLKVWSGNI----TPEDLLSQLIE 109 (114)
T ss_pred HHHHHhCcc------CCCeEEEEeCccCcEeEEEcCCC----CHHHHHHHHHH
Confidence 566777765 4699999999 899998874332 45667666654
No 140
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.62 E-value=0.00041 Score=61.66 Aligned_cols=141 Identities=15% Similarity=0.190 Sum_probs=82.8
Q ss_pred CCCCCCcEEeeeeCCCCceEEcCc-cCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh-hc--CcEEEEEeCCCHHhHH
Q psy16151 68 SKPAPFWQGTAVVDGQLKEIKLSD-YYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QI--NTEVVAASVDSHFTHL 143 (299)
Q Consensus 68 G~~aPdF~L~~~~~~~G~~v~Lsd-~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~-~~--gv~vi~Vs~d~~~~~~ 143 (299)
.-.+|+|...++ +|+.+++.+ ++||+.||..+...|...|....-. ...++|. .. .++++-|++-..- .+
T Consensus 98 AlyFP~l~g~tL---~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e~~-~k 171 (252)
T PF05176_consen 98 ALYFPNLQGKTL---AGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTS--PFLEDFLQEPYGRVQIVEINLIENW-LK 171 (252)
T ss_pred CCcCCCCccccC---CCCCcccccccCCceEEEEEeehHHHHHHHHHHhh--HHHHHHhhCCCCceEEEEEecchHH-HH
Confidence 456799998755 667777776 4899776666657776656544322 2333443 33 6889999876532 22
Q ss_pred HHhhcc-----cccCCCCc-cceeeeecC--chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHH
Q psy16151 144 AWVNTP-----RKEGGLGK-LKIPLLSDL--THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETL 215 (299)
Q Consensus 144 ~~~~~~-----~~~~~~~~-~~~p~l~D~--~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl 215 (299)
.|+-.. ++.-.... -.|-++.+. ...+-+.+|+.+.. ...+||||++|+||+..- +.......+.+.
T Consensus 172 ~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~----~GYvyLVD~~grIRWags-G~At~~E~~~L~ 246 (252)
T PF05176_consen 172 SWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSY----VGYVYLVDPNGRIRWAGS-GPATPEELESLW 246 (252)
T ss_pred HHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCC----cCeEEEECCCCeEEeCcc-CCCCHHHHHHHH
Confidence 333221 11111011 223333333 46888999998664 457899999999999973 333333444444
Q ss_pred HHHh
Q psy16151 216 RLVQ 219 (299)
Q Consensus 216 ~~l~ 219 (299)
+.++
T Consensus 247 k~~~ 250 (252)
T PF05176_consen 247 KCVK 250 (252)
T ss_pred HHHh
Confidence 4443
No 141
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.56 E-value=0.00025 Score=61.38 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=80.1
Q ss_pred CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCc---EEEEEeCCCHHhHH--
Q psy16151 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINT---EVVAASVDSHFTHL-- 143 (299)
Q Consensus 69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv---~vi~Vs~d~~~~~~-- 143 (299)
.++|.+++. ..-.+.+.+|+++||-+-.+ +|..|..++..|..+..+|...|+ .++.|+--+..+..
T Consensus 8 ~~~p~W~i~-------~~~pm~~~~G~VtvVALL~a-sc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~ 79 (238)
T PF04592_consen 8 KPPPPWKIG-------GQDPMLNSLGHVTVVALLQA-SCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKY 79 (238)
T ss_pred CCCCCceEC-------CchHhhhcCCcEEeeeehhh-hhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHH
Confidence 567888853 23467888999988888855 699999999999999999998764 56666643322222
Q ss_pred -HHhhcccccCCCCccceeeee-c-CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151 144 -AWVNTPRKEGGLGKLKIPLLS-D-LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 144 -~~~~~~~~~~~~~~~~~p~l~-D-~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~ 202 (299)
...+.. ...||+.- | .+.++...++-.. --+||+|+-|++.+...
T Consensus 80 ~~l~~r~-------~~~ipVyqq~~~q~dvW~~L~G~k-------dD~~iyDRCGrL~~~i~ 127 (238)
T PF04592_consen 80 WELKRRV-------SEHIPVYQQDENQPDVWELLNGSK-------DDFLIYDRCGRLTYHIP 127 (238)
T ss_pred HHHHHhC-------CCCCceecCCccccCHHHHhCCCc-------CcEEEEeccCcEEEEec
Confidence 111211 34588885 3 4578998888643 35899999999998864
No 142
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.53 E-value=0.00056 Score=45.35 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=34.2
Q ss_pred EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHH
Q psy16151 98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 143 (299)
Q Consensus 98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~ 143 (299)
|+.|| ..||+.|....+.+.++ +....++.++.++.+......
T Consensus 1 l~~~~-~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 43 (69)
T cd01659 1 LVLFY-APWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALE 43 (69)
T ss_pred CEEEE-CCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHh
Confidence 35666 88999999999999998 555668999999988755433
No 143
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.49 E-value=0.0004 Score=55.33 Aligned_cols=23 Identities=17% Similarity=-0.073 Sum_probs=19.2
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILA 116 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~ 116 (299)
.+|+|+|+|+ +.||++|...-..
T Consensus 22 ~~Kpvmv~f~-sdwC~~Ck~l~k~ 44 (130)
T cd02960 22 SNKPLMVIHH-LEDCPHSQALKKA 44 (130)
T ss_pred CCCeEEEEEe-CCcCHhHHHHHHH
Confidence 6899999987 9999999876544
No 144
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.47 E-value=0.00029 Score=52.96 Aligned_cols=49 Identities=31% Similarity=0.470 Sum_probs=41.8
Q ss_pred EEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151 87 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 137 (299)
Q Consensus 87 v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d 137 (299)
.....++++++++.|| +.||+.|....|.+.++.+++.. .+.++.+...
T Consensus 25 ~~~~~~~~~~~~v~f~-~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~ 73 (127)
T COG0526 25 LSLSELKGKPVLVDFW-APWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD 73 (127)
T ss_pred eehhhcCCceEEEEEE-cCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence 4455555889999999 99999999999999999999876 6788888875
No 145
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.47 E-value=0.00086 Score=48.26 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=26.7
Q ss_pred EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151 99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 137 (299)
Q Consensus 99 L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d 137 (299)
|.|| ++|||+|....|.+.++.+++. +.+-.+.+|
T Consensus 3 i~~~-a~~C~~C~~~~~~~~~~~~e~~---~~~~~~~v~ 37 (76)
T TIGR00412 3 IQIY-GTGCANCQMTEKNVKKAVEELG---IDAEFEKVT 37 (76)
T ss_pred EEEE-CCCCcCHHHHHHHHHHHHHHcC---CCeEEEEeC
Confidence 6777 7999999999999999988775 233334444
No 146
>KOG4498|consensus
Probab=97.47 E-value=0.0013 Score=55.00 Aligned_cols=131 Identities=12% Similarity=0.146 Sum_probs=87.8
Q ss_pred CCCCceEEcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccc
Q psy16151 81 DGQLKEIKLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLK 159 (299)
Q Consensus 81 ~~~G~~v~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~ 159 (299)
+..|+.+...++ +.+..+|.|.+-.-|-.|+.+...|.++.+-++..|+..++|..........+.+.- .+.
T Consensus 36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~-------~f~ 108 (197)
T KOG4498|consen 36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQT-------YFS 108 (197)
T ss_pred hhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhccc-------Ccc
Confidence 457899999997 556789999989999999999999999988888899999999764433333333321 222
Q ss_pred eeeeecCchHHHHHhCCcc----------------------c--CC--CCceeEEEEEeCCCcEEEEEeccCC-CCCCHH
Q psy16151 160 IPLLSDLTHKISLDYGVYL----------------------S--DQ--GHTLRGLFIIDRNGVLRQITMNDLP-VGRSVD 212 (299)
Q Consensus 160 ~p~l~D~~~~~~~~~gv~~----------------------~--~~--g~~~p~~~lID~dG~I~~~~~~~~~-~g~~~~ 212 (299)
-.+..|++..+.+.++... . .+ +......+++.+.++|.+.+..... ...+.+
T Consensus 109 gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~gD~~~i~ 188 (197)
T KOG4498|consen 109 GEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKETGDHVPID 188 (197)
T ss_pred eeEEEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCCCCCcCHH
Confidence 2555566544433333211 1 11 1234568999888899999874432 233677
Q ss_pred HHHHHH
Q psy16151 213 ETLRLV 218 (299)
Q Consensus 213 evl~~l 218 (299)
.+++.+
T Consensus 189 ~Vl~v~ 194 (197)
T KOG4498|consen 189 SVLQVV 194 (197)
T ss_pred HHHHHh
Confidence 777665
No 147
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.28 E-value=0.0028 Score=54.19 Aligned_cols=140 Identities=14% Similarity=0.184 Sum_probs=96.1
Q ss_pred CCceEEcCcc-CCCeE-EEE-EEe----CCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCC
Q psy16151 83 QLKEIKLSDY-YGKYL-VFF-FYP----LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGL 155 (299)
Q Consensus 83 ~G~~v~Lsd~-~Gk~v-lL~-F~~----~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~ 155 (299)
+| +.+|+|+ .||-- +|+ |.. ..-||.|...+.++.-....+...+|.+++||--+.+++..+.+..
T Consensus 61 ~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rm------ 133 (247)
T COG4312 61 NG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRM------ 133 (247)
T ss_pred Cc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhc------
Confidence 44 6899996 67633 332 322 3359999999999988888899999999999999999999999887
Q ss_pred CccceeeeecCchHHHHHhCCcccCC----CC-------------ce--eEEEEEeCCCcEEEEEeccCCCCCCHHHHHH
Q psy16151 156 GKLKIPLLSDLTHKISLDYGVYLSDQ----GH-------------TL--RGLFIIDRNGVLRQITMNDLPVGRSVDETLR 216 (299)
Q Consensus 156 ~~~~~p~l~D~~~~~~~~~gv~~~~~----g~-------------~~--p~~~lID~dG~I~~~~~~~~~~g~~~~evl~ 216 (299)
++.||.+++.++.+-+.|.+...+. |. .. -+.|.-+.+|+|-..+.. ..+-.+++..
T Consensus 134 -GW~f~w~Ss~~s~Fn~Df~vsf~~~q~~~G~~~yn~~~~~~~~rd~~G~~vF~~~e~g~v~~ty~~---~~RG~e~~~~ 209 (247)
T COG4312 134 -GWQFPWVSSTDSDFNRDFQVSFTEDQQAPGVVVYNFERTPPTGRDLPGISVFYSDEDGRVYHTYSQ---YARGLEQLIG 209 (247)
T ss_pred -CCcceeEeccCcccccccccccchhhccCceeEeecccCCCccccCCCeeEEEEcCCCcccccccc---CCccccchhh
Confidence 9999999999888888897743321 11 11 235565777877655422 2223344444
Q ss_pred HHhhccCCCCCCccccc
Q psy16151 217 LVQAFHDPLRTGAINGL 233 (299)
Q Consensus 217 ~l~~L~~~~~g~~vn~a 233 (299)
...-|.....|+..+.+
T Consensus 210 ~~~~LD~tPkGR~e~~~ 226 (247)
T COG4312 210 TWNLLDLTPKGRNEDGE 226 (247)
T ss_pred HHHHhccCCCCCCCCCc
Confidence 44444445556665544
No 148
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.26 E-value=0.0021 Score=47.84 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=46.3
Q ss_pred CccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151 90 SDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 169 (299)
Q Consensus 90 sd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 169 (299)
.++++..-+..|+ +.||++|+...+.+.++.+++. ++.+..+..+. ..+
T Consensus 8 ~~l~~pv~i~~F~-~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~----------------------------~~e 56 (89)
T cd03026 8 RRLNGPINFETYV-SLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGAL----------------------------FQD 56 (89)
T ss_pred HhcCCCEEEEEEE-CCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHh----------------------------CHH
Confidence 3455554455554 9999999998888888876553 35554444331 245
Q ss_pred HHHHhCCcccCCCCceeEEEEEeCCCcEEEE
Q psy16151 170 ISLDYGVYLSDQGHTLRGLFIIDRNGVLRQI 200 (299)
Q Consensus 170 ~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~ 200 (299)
+++.||+. ..|+++ + ||+++..
T Consensus 57 ~a~~~~V~------~vPt~v-i--dG~~~~~ 78 (89)
T cd03026 57 EVEERGIM------SVPAIF-L--NGELFGF 78 (89)
T ss_pred HHHHcCCc------cCCEEE-E--CCEEEEe
Confidence 67788886 457775 4 6888765
No 149
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.05 E-value=0.0029 Score=46.06 Aligned_cols=46 Identities=22% Similarity=0.169 Sum_probs=31.5
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHF 140 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~ 140 (299)
.||+++|+|+ +.||+.|...-..+ .++.+.+. +++..+-|..++.+
T Consensus 16 ~~kpvlv~f~-a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~~~~ 64 (82)
T PF13899_consen 16 EGKPVLVDFG-ADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVDDED 64 (82)
T ss_dssp HTSEEEEEEE-TTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETTTHH
T ss_pred cCCCEEEEEE-CCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcCCCC
Confidence 5899999997 99999998776555 22333233 46677766665543
No 150
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.04 E-value=0.0027 Score=60.96 Aligned_cols=89 Identities=8% Similarity=0.181 Sum_probs=60.2
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc--CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI--NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 170 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~--gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~ 170 (299)
.++.+||.|| ++||++|....|.+.++.++++.. ++.+..|..+..+ +
T Consensus 363 ~~~~vlv~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-----------------------------~ 412 (462)
T TIGR01130 363 ETKDVLVEFY-APWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-----------------------------V 412 (462)
T ss_pred CCCeEEEEEE-CCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-----------------------------c
Confidence 4678999998 999999999999999999999862 5667666654210 0
Q ss_pred HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
.. |++. ..|+.++..+.+++...... .....+.+++.+...
T Consensus 413 ~~-~~i~------~~Pt~~~~~~~~~~~~~~~~---g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 413 PP-FEVE------GFPTIKFVPAGKKSEPVPYD---GDRTLEDFSKFIAKH 453 (462)
T ss_pred CC-CCcc------ccCEEEEEeCCCCcCceEec---CcCCHHHHHHHHHhc
Confidence 11 3443 46899999765553112111 234677888877654
No 151
>KOG0908|consensus
Probab=97.04 E-value=0.0022 Score=55.96 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=55.1
Q ss_pred cCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151 89 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH 168 (299)
Q Consensus 89 Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 168 (299)
|+.--+|.|+++|. ++||.+|....|.+.++..+|. +..++=|.+|- -.
T Consensus 16 ls~ag~k~v~Vdft-a~wCGPCk~IaP~Fs~lankYp--~aVFlkVdVd~----------------------------c~ 64 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFT-ASWCGPCKRIAPIFSDLANKYP--GAVFLKVDVDE----------------------------CR 64 (288)
T ss_pred hhccCceEEEEEEE-ecccchHHhhhhHHHHhhhhCc--ccEEEEEeHHH----------------------------hh
Confidence 44446789999998 9999999999999999999995 55666555442 12
Q ss_pred HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
..+..+||. +.|+++.. .+|+-+...
T Consensus 65 ~taa~~gV~------amPTFiff-~ng~kid~~ 90 (288)
T KOG0908|consen 65 GTAATNGVN------AMPTFIFF-RNGVKIDQI 90 (288)
T ss_pred chhhhcCcc------cCceEEEE-ecCeEeeee
Confidence 344567775 56777766 677766555
No 152
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.98 E-value=0.00065 Score=54.20 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=44.3
Q ss_pred cCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151 89 LSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH 168 (299)
Q Consensus 89 Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 168 (299)
++.+..+.-+|.|. .+|||-|...+|.|.++.+... ++++-.++.|.. .+..+.+
T Consensus 36 l~~~~~~~~ilvi~-e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~---~el~~~~------------------- 90 (129)
T PF14595_consen 36 LKSIQKPYNILVIT-ETWCGDCARNVPVLAKIAEANP--NIEVRIILRDEN---KELMDQY------------------- 90 (129)
T ss_dssp HHT--S-EEEEEE---TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHH---HHHTTTT-------------------
T ss_pred HHhcCCCcEEEEEE-CCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCC---hhHHHHH-------------------
Confidence 33445556666666 9999999999999999988754 555555555432 2222221
Q ss_pred HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
-- ..+...|+.+++|.+|+.+.++
T Consensus 91 ------lt---~g~~~IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 91 ------LT---NGGRSIPTFIFLDKDGKELGRW 114 (129)
T ss_dssp ------TT----SS--SSEEEEE-TT--EEEEE
T ss_pred ------Hh---CCCeecCEEEEEcCCCCEeEEE
Confidence 11 0123679999999999999887
No 153
>smart00594 UAS UAS domain.
Probab=96.93 E-value=0.016 Score=45.60 Aligned_cols=69 Identities=12% Similarity=-0.001 Sum_probs=43.6
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 169 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 169 (299)
.+|+++|+|+ +.||+.|....... .++.+.+. +++.++.+.+++++ ..+
T Consensus 26 ~~K~~lv~~~-~~~c~~c~~~~r~vl~~~~V~~~i~-~~fv~~~~dv~~~e--------------------------g~~ 77 (122)
T smart00594 26 QRRLLWLYLH-SQDSPDSQVFNRDVLCNEAVKSLIR-ENFIFWQVDVDTSE--------------------------GQR 77 (122)
T ss_pred hcCCEEEEEe-CCCCchHHHHHHHHccCHHHHHHHH-cCEEEEEecCCChh--------------------------HHH
Confidence 5788999998 99999998765432 11222222 23344444333322 246
Q ss_pred HHHHhCCcccCCCCceeEEEEEeCCC
Q psy16151 170 ISLDYGVYLSDQGHTLRGLFIIDRNG 195 (299)
Q Consensus 170 ~~~~~gv~~~~~g~~~p~~~lID~dG 195 (299)
++..|++. ..|+..++|++|
T Consensus 78 l~~~~~~~------~~P~~~~l~~~~ 97 (122)
T smart00594 78 VSQFYKLD------SFPYVAIVDPRT 97 (122)
T ss_pred HHHhcCcC------CCCEEEEEecCC
Confidence 77778875 468999999997
No 154
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.89 E-value=0.0024 Score=48.14 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=34.1
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV 136 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~ 136 (299)
.|+++++.|+ +.||+.|....+.+.++.+++++ .+.++-|..
T Consensus 11 ~~~~~~~~f~-~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~ 52 (103)
T cd02982 11 SGKPLLVLFY-NKDDSESEELRERFKEVAKKFKG-KLLFVVVDA 52 (103)
T ss_pred cCCCEEEEEE-cCChhhHHHHHHHHHHHHHHhCC-eEEEEEEch
Confidence 3788999998 89999999999999999999985 355555443
No 155
>PHA02125 thioredoxin-like protein
Probab=96.81 E-value=0.016 Score=41.40 Aligned_cols=21 Identities=10% Similarity=0.327 Sum_probs=17.2
Q ss_pred EEEEEeCCCCCCchhhHHHHHH
Q psy16151 98 VFFFYPLDFTFVCPTEILAFND 119 (299)
Q Consensus 98 lL~F~~~~~cp~C~~~~~~l~~ 119 (299)
++.|+ +.||++|+...|.|.+
T Consensus 2 iv~f~-a~wC~~Ck~~~~~l~~ 22 (75)
T PHA02125 2 IYLFG-AEWCANCKMVKPMLAN 22 (75)
T ss_pred EEEEE-CCCCHhHHHHHHHHHH
Confidence 56676 9999999988887754
No 156
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=96.59 E-value=0.014 Score=45.72 Aligned_cols=110 Identities=13% Similarity=0.116 Sum_probs=72.2
Q ss_pred EcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecC
Q psy16151 88 KLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 166 (299)
Q Consensus 88 ~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 166 (299)
.|+++++| -+||+|-+..--+.-..++..|.+....+.++.+.++.+.-+..... ..++-.+.
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~----------------~~~~~~~~ 65 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSP----------------GKPLSPED 65 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccc----------------cCcCCHHH
Confidence 36788886 56777754444444556677777777778888888888854432110 01111122
Q ss_pred chHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhcc
Q psy16151 167 THKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFH 222 (299)
Q Consensus 167 ~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~ 222 (299)
...+.+.|++.. ..-+.+||++||.+..++ ....+.+++.+.|++..
T Consensus 66 ~~~lr~~l~~~~-----~~f~~vLiGKDG~vK~r~----~~p~~~~~lf~~ID~MP 112 (118)
T PF13778_consen 66 IQALRKRLRIPP-----GGFTVVLIGKDGGVKLRW----PEPIDPEELFDTIDAMP 112 (118)
T ss_pred HHHHHHHhCCCC-----CceEEEEEeCCCcEEEec----CCCCCHHHHHHHHhCCc
Confidence 367888888752 224789999999999886 23347889999998753
No 157
>KOG0190|consensus
Probab=96.53 E-value=0.0081 Score=57.94 Aligned_cols=92 Identities=21% Similarity=0.277 Sum_probs=63.9
Q ss_pred CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHh
Q psy16151 95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 174 (299)
Q Consensus 95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~ 174 (299)
.++++-|| +.||.+|....|.+.+..+.+++.+=.|--.-+|.. .++.++.+|
T Consensus 43 ~~vlVeFY-APWCghck~LaPey~kAA~~Lke~~s~i~LakVDat--------------------------~~~~~~~~y 95 (493)
T KOG0190|consen 43 EFVLVEFY-APWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT--------------------------EESDLASKY 95 (493)
T ss_pred ceEEEEEE-chhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc--------------------------hhhhhHhhh
Confidence 36677777 999999999999999999999875322222222221 236788889
Q ss_pred CCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCC
Q psy16151 175 GVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDP 224 (299)
Q Consensus 175 gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~ 224 (299)
++. ..|+.-|+ ++|+....+ ..++..+.++..+++...|
T Consensus 96 ~v~------gyPTlkiF-rnG~~~~~Y----~G~r~adgIv~wl~kq~gP 134 (493)
T KOG0190|consen 96 EVR------GYPTLKIF-RNGRSAQDY----NGPREADGIVKWLKKQSGP 134 (493)
T ss_pred cCC------CCCeEEEE-ecCCcceec----cCcccHHHHHHHHHhccCC
Confidence 986 35676666 899983332 3456788888888875443
No 158
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.45 E-value=0.014 Score=40.30 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=25.7
Q ss_pred EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151 98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 137 (299)
Q Consensus 98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d 137 (299)
|..|+ +.|||+|....+.|.++.+.. .++.+.-+.++
T Consensus 3 v~~f~-~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~ 39 (67)
T cd02973 3 IEVFV-SPTCPYCPDAVQAANRIAALN--PNISAEMIDAA 39 (67)
T ss_pred EEEEE-CCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcc
Confidence 45555 999999999988888886543 24666555443
No 159
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.18 E-value=0.065 Score=42.02 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=35.1
Q ss_pred CCCeEEEEEEeC------CCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhh
Q psy16151 93 YGKYLVFFFYPL------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVN 147 (299)
Q Consensus 93 ~Gk~vlL~F~~~------~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~ 147 (299)
.|+++.|+|..+ +|||.|....|.+.+...... .+..+|-|.+.+. ..|..
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~-~~~~lv~v~VG~r---~~Wkd 74 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP-ENARLVYVEVGDR---PEWKD 74 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S-TTEEEEEEE---H---HHHC-
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC-CCceEEEEEcCCH---HHhCC
Confidence 567788888733 599999999999999887743 4778888888764 36764
No 160
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.17 E-value=0.11 Score=43.09 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=46.7
Q ss_pred EEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecC
Q psy16151 87 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 166 (299)
Q Consensus 87 v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 166 (299)
+..+.-.+|+++|.++ .+||..|..... +-|. + .+..+++++. -.|+..|.
T Consensus 30 ~~~Ak~e~KpIfl~ig-~~~C~wChvM~~------esf~------------d-~eVa~~lN~~---------FI~VkvDr 80 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIG-YSWCHWCHVMER------ESFS------------D-PEVAEYLNRN---------FIPVKVDR 80 (163)
T ss_dssp HHHHHHHT--EEEEEE--TT-HHHHHHHH------HTTT--------------HHHHHHHHHH----------EEEEEET
T ss_pred HHHHHhcCCcEEEEEE-ecCCcchhhhcc------cCcC------------C-HHHHHHHhCC---------EEEEEecc
Confidence 3444446789999988 889999975432 1121 1 1233333321 12333333
Q ss_pred c--hHHHHHh--------CCcccCCCCceeEEEEEeCCCcEEEEEeccCCC----CCCHHHHHHHHhh
Q psy16151 167 T--HKISLDY--------GVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPV----GRSVDETLRLVQA 220 (299)
Q Consensus 167 ~--~~~~~~~--------gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~----g~~~~evl~~l~~ 220 (299)
+ .++.+.| |.- ..|.+++++|||+..+...+-.+. .....+++..+..
T Consensus 81 ee~Pdid~~y~~~~~~~~~~g------GwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~ 142 (163)
T PF03190_consen 81 EERPDIDKIYMNAVQAMSGSG------GWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAE 142 (163)
T ss_dssp TT-HHHHHHHHHHHHHHHS---------SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHhcCCC------CCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHH
Confidence 2 3344444 221 468999999999999987654332 1244555555543
No 161
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.93 E-value=0.11 Score=44.86 Aligned_cols=28 Identities=14% Similarity=0.136 Sum_probs=19.7
Q ss_pred CeE-EEEEEeCCCCCCchhhHHHHHHHHHH
Q psy16151 95 KYL-VFFFYPLDFTFVCPTEILAFNDRLEE 123 (299)
Q Consensus 95 k~v-lL~F~~~~~cp~C~~~~~~l~~l~~~ 123 (299)
+++ |+.|| +.||++|....+.+.++..+
T Consensus 133 ~pv~I~~F~-a~~C~~C~~~~~~l~~l~~~ 161 (215)
T TIGR02187 133 EPVRIEVFV-TPTCPYCPYAVLMAHKFALA 161 (215)
T ss_pred CCcEEEEEE-CCCCCCcHHHHHHHHHHHHh
Confidence 444 44466 99999999877766666544
No 162
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=94.89 E-value=0.063 Score=37.78 Aligned_cols=33 Identities=3% Similarity=0.113 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
+..|| ++|||.|+...+.|.++ ++..-.+.++.
T Consensus 2 v~ly~-~~~C~~C~~~~~~L~~~-------~~~~~~idi~~ 34 (77)
T TIGR02200 2 ITVYG-TTWCGYCAQLMRTLDKL-------GAAYEWVDIEE 34 (77)
T ss_pred EEEEE-CCCChhHHHHHHHHHHc-------CCceEEEeCcC
Confidence 34555 89999999987766543 55555565554
No 163
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=94.55 E-value=0.13 Score=40.21 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=56.1
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL 172 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~ 172 (299)
+.+.+||-|+ ++| |.|.. .|++.++.+++....-.|+..-+|-.+ +-+ ..+.++++
T Consensus 17 ~~~~vlV~F~-A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d----~~~-----------------~~~~~L~~ 72 (116)
T cd03007 17 KFKYSLVKFD-TAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKD----YGE-----------------KLNMELGE 72 (116)
T ss_pred cCCcEEEEEe-CCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccc----ccc-----------------hhhHHHHH
Confidence 3457888887 977 67775 599999998886533233322333100 000 01357899
Q ss_pred HhCCcccCCCCceeEEEEEeCCCcE-EEEEeccCCCCCCHHHHHHHHhh
Q psy16151 173 DYGVYLSDQGHTLRGLFIIDRNGVL-RQITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 173 ~~gv~~~~~g~~~p~~~lID~dG~I-~~~~~~~~~~g~~~~evl~~l~~ 220 (299)
.|||... ..|+.+++. +|.- .... +. +.++..+.+++.+..
T Consensus 73 ~y~I~~~----gyPTl~lF~-~g~~~~~~~-Y~-G~~r~~~~lv~~v~~ 114 (116)
T cd03007 73 RYKLDKE----SYPVIYLFH-GGDFENPVP-YS-GADVTVDALQRFLKG 114 (116)
T ss_pred HhCCCcC----CCCEEEEEe-CCCcCCCcc-CC-CCcccHHHHHHHHHh
Confidence 9999522 368988884 5631 1111 11 112778888887764
No 164
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=94.55 E-value=0.14 Score=35.35 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=22.4
Q ss_pred EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
+|.++|||.|....+.|.+ .++.+..+.+++
T Consensus 4 lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~ 34 (74)
T TIGR02196 4 VYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEK 34 (74)
T ss_pred EEcCCCChhHHHHHHHHHH-------CCCeEEEEeccC
Confidence 3449999999987665543 477777777664
No 165
>KOG0190|consensus
Probab=94.30 E-value=0.051 Score=52.55 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=31.2
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI 127 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~ 127 (299)
.+|-|||-|+ +.||.+|..-.|.+.+|.+.|++.
T Consensus 383 e~KdVLvEfy-APWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFY-APWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEc-CcccchhhhhhhHHHHHHHHhcCC
Confidence 5678999998 999999999999999999999974
No 166
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=93.71 E-value=0.56 Score=36.57 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=53.6
Q ss_pred cCCCeEEEEEEeCC----CCCCchhhH--HHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeec
Q psy16151 92 YYGKYLVFFFYPLD----FTFVCPTEI--LAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD 165 (299)
Q Consensus 92 ~~Gk~vlL~F~~~~----~cp~C~~~~--~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D 165 (299)
-.+|+++|+++ +. ||..|+..+ |.+.+.. +.++.+.+.++++++
T Consensus 15 ~e~K~llVylh-s~~~~~~~~fc~~~l~~~~v~~~l----n~~fv~w~~dv~~~e------------------------- 64 (116)
T cd02991 15 QELRFLLVYLH-GDDHQDTDEFCRNTLCAPEVIEYI----NTRMLFWACSVAKPE------------------------- 64 (116)
T ss_pred hhCCEEEEEEe-CCCCccHHHHHHHHcCCHHHHHHH----HcCEEEEEEecCChH-------------------------
Confidence 35789999998 66 777786543 2233222 234555555555433
Q ss_pred CchHHHHHhCCcccCCCCceeEEEEE---eCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 166 LTHKISLDYGVYLSDQGHTLRGLFII---DRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 166 ~~~~~~~~~gv~~~~~g~~~p~~~lI---D~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
..+++..+++. ..|...+| +.+.+|+.+..+ ....++++..+...
T Consensus 65 -g~~la~~l~~~------~~P~~~~l~~~~~~~~vv~~i~G----~~~~~~ll~~L~~~ 112 (116)
T cd02991 65 -GYRVSQALRER------TYPFLAMIMLKDNRMTIVGRLEG----LIQPEDLINRLTFI 112 (116)
T ss_pred -HHHHHHHhCCC------CCCEEEEEEecCCceEEEEEEeC----CCCHHHHHHHHHHH
Confidence 15677778875 56888888 444555655533 23567777776643
No 167
>KOG0191|consensus
Probab=93.61 E-value=0.48 Score=44.78 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=28.5
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~ 126 (299)
.++..++.|| +.||.+|....|.+.++...+++
T Consensus 46 ~~~~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~ 78 (383)
T KOG0191|consen 46 DDSPWLVEFY-APWCGHCKKLAPTYKKLAKALKG 78 (383)
T ss_pred cCCceEEEEE-CCCCcchhhhchHHHHHHHHhcC
Confidence 3457888888 99999999999999998888875
No 168
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=93.61 E-value=0.068 Score=43.67 Aligned_cols=52 Identities=33% Similarity=0.413 Sum_probs=43.5
Q ss_pred CCCccccc----cceeccceechHHHHHHHhhcCceEEecceeeeccc-ceeEEEEE
Q psy16151 226 RTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGK-GLITTYFI 277 (299)
Q Consensus 226 ~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~-~~~~t~~~ 277 (299)
+|++||.| +...+|.|.+|+++++.|....|.+...|.+.+||. +.+.+|++
T Consensus 121 ~G~~v~~A~rl~~~a~~~~i~vs~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~y~~ 177 (177)
T cd07302 121 IGDTVNLAARLESLAKPGQILVSEATYELLGDAGFEFEELGEVELKGKSGPVRVYRL 177 (177)
T ss_pred ecchHhHHHHHHhcCCCCEEEECHHHHHhhccCceEEEEeCCEEecCCCCceEEEEC
Confidence 46677666 445589999999999999876799999999999997 88999874
No 169
>KOG3618|consensus
Probab=93.60 E-value=0.048 Score=54.74 Aligned_cols=64 Identities=27% Similarity=0.335 Sum_probs=49.7
Q ss_pred hccCCCCCCccccc----cceeccceechHHHHHHHhhcCc-----eEEecceeeeccc------ceeEEEEEEccccc
Q psy16151 220 AFHDPLRTGAINGL----SLLVIGLFQVTEKTCDILEDHGV-----TCELRGRTFIKGK------GLITTYFIRQQEIE 283 (299)
Q Consensus 220 ~L~~~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~-----~~~~rg~~~~k~~------~~~~t~~~~~~~~~ 283 (299)
..+...|...||.| |.|++|+.|+||+|++.|.+.++ +.+.-|+..|-|. |.+.||++.|+.+.
T Consensus 452 RfKFDVwSNDV~LAN~MEssGvag~VHiSeaTak~L~d~Ye~EeG~~~~g~~~~~V~g~~rRtnP~t~kt~li~G~~ga 530 (1318)
T KOG3618|consen 452 RFKFDVWSNDVNLANLMESSGVAGKVHISEATAKYLDDRYEMEEGKVIEGLGQSVVAGQLRRTNPGTLKTYLISGQRGA 530 (1318)
T ss_pred eEeeeeccCcchHHHHHHhcCCCcceEeeHHHHHHhcccceeccCccccccceeEEeceeeecCCcccceEEecCcccc
Confidence 34556678888888 89999999999999999987532 3445566677663 67999999998753
No 170
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.56 E-value=0.074 Score=52.12 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=54.2
Q ss_pred cCCCeEEEEEEeCCCCCCchhhHH-HHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHH
Q psy16151 92 YYGKYLVFFFYPLDFTFVCPTEIL-AFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKI 170 (299)
Q Consensus 92 ~~Gk~vlL~F~~~~~cp~C~~~~~-~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~ 170 (299)
-++|+|+|+|+ ++||-.|+..-+ .+.+-+.+++-.|+..+=+.+ .+. .+.+.++
T Consensus 472 ~~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDv---------T~~---------------~p~~~~l 526 (569)
T COG4232 472 AKAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQDVVLLQADV---------TAN---------------DPAITAL 526 (569)
T ss_pred CCCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeee---------cCC---------------CHHHHHH
Confidence 35679999999 999999974432 223333444433444332221 110 1113566
Q ss_pred HHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151 171 SLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 171 ~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~ 220 (299)
.++||+. ..|+.++++++|.-.... ..-.+.+.+++.++.
T Consensus 527 Lk~~~~~------G~P~~~ff~~~g~e~~~l----~gf~~a~~~~~~l~~ 566 (569)
T COG4232 527 LKRLGVF------GVPTYLFFGPQGSEPEIL----TGFLTADAFLEHLER 566 (569)
T ss_pred HHHcCCC------CCCEEEEECCCCCcCcCC----cceecHHHHHHHHHH
Confidence 6777876 458999999998755442 222345566666543
No 171
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=93.54 E-value=0.76 Score=40.38 Aligned_cols=37 Identities=14% Similarity=-0.045 Sum_probs=27.2
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA 134 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V 134 (299)
.|+.+|+.|. -..||+|+...+.+.++. +.|+.|..+
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl~~~l~~~~----~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLHEQMKDYN----ALGITVRYL 142 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHHHHHHHHHh----cCCeEEEEE
Confidence 4677788887 777999999888877653 346776554
No 172
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=93.22 E-value=0.12 Score=37.07 Aligned_cols=35 Identities=14% Similarity=0.058 Sum_probs=24.1
Q ss_pred EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151 99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 137 (299)
Q Consensus 99 L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d 137 (299)
+.|+ +.|||.|....+.|.++. .. ..+.++-|+.+
T Consensus 2 ~~f~-~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~ 36 (84)
T TIGR02180 2 VVFS-KSYCPYCKKAKEILAKLN--VK-PAYEVVELDQL 36 (84)
T ss_pred EEEE-CCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCC
Confidence 4455 999999999998888764 11 12566666654
No 173
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.09 E-value=0.58 Score=41.61 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=52.6
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEe-----CCCHH-hHHHHhhc--------ccccCCCCcc
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS-----VDSHF-THLAWVNT--------PRKEGGLGKL 158 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs-----~d~~~-~~~~~~~~--------~~~~~~~~~~ 158 (299)
.+|.+|.+|. -..||+|+.....+.++.+. .+++|.-+- .++.. ...-|... +...+...+.
T Consensus 116 ~ak~~I~vFt-Dp~CpyC~kl~~~l~~~~~~---g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 116 DAPRIVYVFA-DPNCPYCKQFWQQARPWVDS---GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCCeEEEEEE-CCCChhHHHHHHHHHHHhhc---CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 4667777777 77799999988887765432 135543332 22211 11222221 1111000011
Q ss_pred ceeee--------ecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEE
Q psy16151 159 KIPLL--------SDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQI 200 (299)
Q Consensus 159 ~~p~l--------~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~ 200 (299)
.-+.. .+.+.++++.+|+. ..|+.|+.|.+|++..+
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~------GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGAN------ATPAIYYMDKDGTLQQV 235 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCC------CCCEEEEECCCCCEEEe
Confidence 11110 01135678888886 45899999999987655
No 174
>KOG0912|consensus
Probab=93.02 E-value=0.34 Score=43.85 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=60.2
Q ss_pred CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccce-eeeecCchHHHHH
Q psy16151 95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI-PLLSDLTHKISLD 173 (299)
Q Consensus 95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~-p~l~D~~~~~~~~ 173 (299)
..|+|.|+ ++||+..+...|-+.+..+.++++- -+ +..-| .+=+|.+..++..
T Consensus 14 elvfv~Fy-AdWCrFSq~L~piF~EAa~~~~~e~-----------------P~--------~kvvwg~VDcd~e~~ia~k 67 (375)
T KOG0912|consen 14 ELVFVNFY-ADWCRFSQMLKPIFEEAAAKFKQEF-----------------PE--------GKVVWGKVDCDKEDDIADK 67 (375)
T ss_pred eEEeeeee-hhhchHHHHHhHHHHHHHHHHHHhC-----------------CC--------cceEEEEcccchhhHHhhh
Confidence 46788887 9999999999999999988887521 00 01122 1224556678888
Q ss_pred hCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151 174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~ 220 (299)
|.|. -+|+.=|+ .+|.+..+.+ +..+.++.+.+.++.
T Consensus 68 y~I~------KyPTlKvf-rnG~~~~rEY---Rg~RsVeaL~efi~k 104 (375)
T KOG0912|consen 68 YHIN------KYPTLKVF-RNGEMMKREY---RGQRSVEALIEFIEK 104 (375)
T ss_pred hccc------cCceeeee-eccchhhhhh---ccchhHHHHHHHHHH
Confidence 9886 46787666 6888876653 334566666666543
No 175
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=92.56 E-value=1.3 Score=35.47 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=32.1
Q ss_pred CchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 166 LTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 166 ~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
.+..++..|||. ..|+.+++ +||+++....+. .+.+++.+.++.+
T Consensus 79 ~~~~LA~~fgV~------siPTLl~F-kdGk~v~~i~G~----~~k~~l~~~I~~~ 123 (132)
T PRK11509 79 QSEAIGDRFGVF------RFPATLVF-TGGNYRGVLNGI----HPWAELINLMRGL 123 (132)
T ss_pred CCHHHHHHcCCc------cCCEEEEE-ECCEEEEEEeCc----CCHHHHHHHHHHH
Confidence 356788999996 57898888 799999887432 2345666666554
No 176
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=92.15 E-value=1.4 Score=31.28 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=16.0
Q ss_pred CCCCCCchhhHHHHHHHHHHH
Q psy16151 104 LDFTFVCPTEILAFNDRLEEF 124 (299)
Q Consensus 104 ~~~cp~C~~~~~~l~~l~~~~ 124 (299)
+..||.|......+.++..++
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~ 27 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL 27 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT
T ss_pred CCCCCCcHHHHHHHHHHHHhc
Confidence 677999997777777766555
No 177
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=90.97 E-value=0.67 Score=33.61 Aligned_cols=35 Identities=9% Similarity=-0.083 Sum_probs=27.0
Q ss_pred EeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 102 YPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 102 ~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
|..+|||.|......|.++..++ .++.+.-+.++.
T Consensus 6 y~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 6 FGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 34889999999999999887655 367777776653
No 178
>KOG3425|consensus
Probab=90.95 E-value=0.61 Score=36.36 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=39.2
Q ss_pred cCcc-CCCeEEEEEEeC-------CCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhc
Q psy16151 89 LSDY-YGKYLVFFFYPL-------DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNT 148 (299)
Q Consensus 89 Lsd~-~Gk~vlL~F~~~-------~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~ 148 (299)
++++ +|+.+.+.|..+ +|||.|....|-+.+..+... .++.+|-|-+.+.. .|..-
T Consensus 19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG~rp---~Wk~p 82 (128)
T KOG3425|consen 19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVGNRP---YWKDP 82 (128)
T ss_pred HHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEecCCC---cccCC
Confidence 3444 566666666533 599999999999998877544 47888888876642 56643
No 179
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=1.3 Score=36.23 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=64.0
Q ss_pred ccCCCeEEEEEEeCCCCCCchhh---HHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCc
Q psy16151 91 DYYGKYLVFFFYPLDFTFVCPTE---ILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT 167 (299)
Q Consensus 91 d~~Gk~vlL~F~~~~~cp~C~~~---~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~ 167 (299)
.-.+|+.+|.|- ...|+.|... +-.-.++++.++. .+.++-+...+.... .+... .. ...-..
T Consensus 39 ~~~~Kylllmfe-s~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv-~f~~g--------~k---ee~~s~ 104 (182)
T COG2143 39 SPNDKYLLLMFE-SNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPV-LFKVG--------DK---EEKMST 104 (182)
T ss_pred CccCcEEEEEEc-CCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcce-EeecC--------ce---eeeecH
Confidence 346799999997 6669999643 3333445555543 345544443221100 00000 11 111123
Q ss_pred hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccC
Q psy16151 168 HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHD 223 (299)
Q Consensus 168 ~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~ 223 (299)
.++++.|++. +.|+.++.|.+|+-+.... .-.+.++.+..++-...
T Consensus 105 ~ELa~kf~vr------stPtfvFfdk~Gk~Il~lP----GY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 105 EELAQKFAVR------STPTFVFFDKTGKTILELP----GYMPPEQFLAVLKYVAD 150 (182)
T ss_pred HHHHHHhccc------cCceEEEEcCCCCEEEecC----CCCCHHHHHHHHHHHHH
Confidence 6899999997 5699999999999887652 23356677777665543
No 180
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=90.46 E-value=0.79 Score=31.32 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=20.9
Q ss_pred EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
+|...|||.|......|.+ .++.+..+.+|.
T Consensus 4 l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~ 34 (73)
T cd02976 4 VYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDE 34 (73)
T ss_pred EEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCC
Confidence 3348899999876554443 467777777764
No 181
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=89.54 E-value=1.3 Score=37.56 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=21.1
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHH
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFND 119 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~ 119 (299)
.+++.|+.|. -..||+|....+.+.+
T Consensus 76 ~~~~~i~~f~-D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFT-DPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEE-CCCCccHHHHHHHHhh
Confidence 4677777777 7889999999888876
No 182
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=89.26 E-value=0.6 Score=37.21 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=28.0
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA 134 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V 134 (299)
++++|+.|+ ..+||+|....+.+.++..++.+ +.++..
T Consensus 5 a~~~i~~f~-D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~ 42 (154)
T cd03023 5 GDVTIVEFF-DYNCGYCKKLAPELEKLLKEDPD--VRVVFK 42 (154)
T ss_pred CCEEEEEEE-CCCChhHHHhhHHHHHHHHHCCC--ceEEEE
Confidence 456677776 88999999999999988776643 444433
No 183
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=89.07 E-value=1.5 Score=33.50 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=44.4
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 173 (299)
.++++|+=. ++.||....-..+|.+.++...+. +.++.|-+-.. -+....++..
T Consensus 19 ~~~~~iFKH-St~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~~~------------------------R~vSn~IAe~ 72 (105)
T PF11009_consen 19 EKPVLIFKH-STRCPISAMALREFEKFWEESPDE-IPVYYLDVIEY------------------------RPVSNAIAED 72 (105)
T ss_dssp -SEEEEEEE--TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGG------------------------HHHHHHHHHH
T ss_pred cCcEEEEEe-CCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEEeC------------------------chhHHHHHHH
Confidence 466666655 666887777777777776665542 55555533111 0124689999
Q ss_pred hCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 174 YGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
|||... .|..+|| +||++++..
T Consensus 73 ~~V~He-----SPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 73 FGVKHE-----SPQVILI-KNGKVVWHA 94 (105)
T ss_dssp HT---------SSEEEEE-ETTEEEEEE
T ss_pred hCCCcC-----CCcEEEE-ECCEEEEEC
Confidence 999754 4899999 699999875
No 184
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=88.89 E-value=1.1 Score=30.35 Aligned_cols=38 Identities=5% Similarity=-0.107 Sum_probs=25.3
Q ss_pred eCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhh
Q psy16151 103 PLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVN 147 (299)
Q Consensus 103 ~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~ 147 (299)
...|||.|+.....|.+. ++.+.-+.++......+++.
T Consensus 6 ~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~ 43 (72)
T cd02066 6 SKSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELK 43 (72)
T ss_pred ECCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHH
Confidence 388999999887766654 56777777765443444443
No 185
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=88.24 E-value=1.1 Score=31.99 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=23.5
Q ss_pred EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151 98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 140 (299)
Q Consensus 98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~ 140 (299)
|..|. .+|||.|...-..|. +.|+....+.++...
T Consensus 10 V~ly~-~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~ 44 (79)
T TIGR02190 10 VVVFT-KPGCPFCAKAKATLK-------EKGYDFEEIPLGNDA 44 (79)
T ss_pred EEEEE-CCCCHhHHHHHHHHH-------HcCCCcEEEECCCCh
Confidence 33444 899999988776664 347777667776543
No 186
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=87.19 E-value=4.6 Score=33.61 Aligned_cols=116 Identities=14% Similarity=0.020 Sum_probs=58.3
Q ss_pred ccccccCCCCCCCCcEEeeeeCCCCceEEcCcc---CCCeEEEEEEeCCCCCCchhhHHHHHHHHH-------HHhhc--
Q psy16151 60 YFICFKLVSKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLE-------EFHQI-- 127 (299)
Q Consensus 60 ~~~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~---~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~-------~~~~~-- 127 (299)
.....+.+|..+|+..+.. -.||+++.|.+. .|++-|++|-...-.+.+...+..|.+..+ .|...
T Consensus 25 ~~a~~l~~G~Rlp~~~v~r--~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~ 102 (169)
T PF07976_consen 25 SLAGGLRPGRRLPSAKVVR--HADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDR 102 (169)
T ss_dssp GGBTTS-TTCB----EEEE--TTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS
T ss_pred ccccCcCCccccCCceEEE--EcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCC
Confidence 3456799999999999863 468899999985 699988888734434444444555554332 33322
Q ss_pred ----CcEEEEEeCCCHH--hHHHHhhcccccCCCCc-cceeeeecC------chHHHHHhCCc
Q psy16151 128 ----NTEVVAASVDSHF--THLAWVNTPRKEGGLGK-LKIPLLSDL------THKISLDYGVY 177 (299)
Q Consensus 128 ----gv~vi~Vs~d~~~--~~~~~~~~~~~~~~~~~-~~~p~l~D~------~~~~~~~~gv~ 177 (299)
-++++.|...+.. ++.++=+.++...+..+ ..+.+..|. .+.+.+.|||.
T Consensus 103 ~~~s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid 165 (169)
T PF07976_consen 103 DPDSVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGID 165 (169)
T ss_dssp -TTSSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBB
T ss_pred CCCCeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCC
Confidence 2778888654311 11122222221111112 234556663 37888999974
No 187
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=86.92 E-value=4.4 Score=40.26 Aligned_cols=30 Identities=17% Similarity=-0.016 Sum_probs=21.1
Q ss_pred CeEEEEEEeCCCCCCchhhHHHHHHHHHHH
Q psy16151 95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124 (299)
Q Consensus 95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~ 124 (299)
+++-|-+|.+.+||.|+.....++++..+.
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~ 505 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLN 505 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhC
Confidence 556555555999999997777666665543
No 188
>PHA03050 glutaredoxin; Provisional
Probab=86.71 E-value=1 Score=34.64 Aligned_cols=25 Identities=12% Similarity=0.095 Sum_probs=16.0
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDR 120 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l 120 (299)
.+.|+|+ . .+|||+|......|.+.
T Consensus 12 ~~~V~vy-s-~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 12 NNKVTIF-V-KFTCPFCRNALDILNKF 36 (108)
T ss_pred cCCEEEE-E-CCCChHHHHHHHHHHHc
Confidence 3444443 3 88999998776655543
No 189
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=85.74 E-value=1.2 Score=33.56 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=21.3
Q ss_pred CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
.+|+|+. .+|||.|...-..|.+ .|+..-.+.+|.
T Consensus 8 ~~Vvvys--k~~Cp~C~~ak~~L~~-------~~i~~~~vdid~ 42 (99)
T TIGR02189 8 KAVVIFS--RSSCCMCHVVKRLLLT-------LGVNPAVHEIDK 42 (99)
T ss_pred CCEEEEE--CCCCHHHHHHHHHHHH-------cCCCCEEEEcCC
Confidence 4444443 7899999876654443 356555566653
No 190
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=85.29 E-value=1.6 Score=29.16 Aligned_cols=40 Identities=8% Similarity=-0.065 Sum_probs=26.3
Q ss_pred EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHh
Q psy16151 99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV 146 (299)
Q Consensus 99 L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~ 146 (299)
+.|. ..+||.|......| ++.|+..-.+.++......+.+
T Consensus 2 ~vy~-~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l 41 (60)
T PF00462_consen 2 VVYT-KPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREEL 41 (60)
T ss_dssp EEEE-STTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHH
T ss_pred EEEE-cCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHH
Confidence 4444 88999998776555 4467888888777643333333
No 191
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=85.12 E-value=2.3 Score=31.01 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=22.7
Q ss_pred EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151 101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 137 (299)
Q Consensus 101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d 137 (299)
.|..+|||.|......|.++..++. ++.+.-+.++
T Consensus 4 vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 4 IFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 3458899999988877776543322 4555555554
No 192
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=84.88 E-value=2.6 Score=33.99 Aligned_cols=49 Identities=12% Similarity=0.017 Sum_probs=34.8
Q ss_pred EEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh-hcCcEEEEEeC
Q psy16151 87 IKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-QINTEVVAASV 136 (299)
Q Consensus 87 v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~-~~gv~vi~Vs~ 136 (299)
+.+-+-.++++|+.|+ ..-||+|....+.+.++.+++- +..+.++...+
T Consensus 5 ~~~G~~~a~~~v~~f~-d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFF-DFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CeecCCCCCeEEEEEE-CCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3444445677777776 7779999999999999999982 33577777755
No 193
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=84.58 E-value=1.3 Score=31.32 Aligned_cols=33 Identities=9% Similarity=0.124 Sum_probs=21.5
Q ss_pred EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
+|...|||.|...-..|.++.. ...++=|..++
T Consensus 4 ~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 4 VFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 3448999999988877776532 34455555543
No 194
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=82.80 E-value=2.4 Score=29.57 Aligned_cols=32 Identities=13% Similarity=0.236 Sum_probs=22.3
Q ss_pred EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151 101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 139 (299)
Q Consensus 101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~ 139 (299)
+|...+||.|......|.+ .|+.+-.+.++..
T Consensus 3 ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~~~ 34 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALEE-------HGIAFEEINIDEQ 34 (72)
T ss_pred EEeCCCCHHHHHHHHHHHH-------CCCceEEEECCCC
Confidence 3447889999887766653 5777766766643
No 195
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=82.52 E-value=3.7 Score=30.72 Aligned_cols=39 Identities=5% Similarity=-0.007 Sum_probs=24.4
Q ss_pred CCCeEEEEEEe---CCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 93 YGKYLVFFFYP---LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 93 ~Gk~vlL~F~~---~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
..++|+|+--. .+|||.|...-..|.+ .|+....+.++.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~ 51 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLE 51 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCC
Confidence 34566666542 2789999876655544 466666666643
No 196
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=82.40 E-value=3.3 Score=28.73 Aligned_cols=29 Identities=7% Similarity=-0.011 Sum_probs=19.9
Q ss_pred eCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 103 PLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 103 ~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
..+|||.|......|. +.|+...-+.++.
T Consensus 7 s~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~ 35 (72)
T cd03029 7 TKPGCPFCARAKAALQ-------ENGISYEEIPLGK 35 (72)
T ss_pred ECCCCHHHHHHHHHHH-------HcCCCcEEEECCC
Confidence 3889999988765554 3466666666654
No 197
>PRK10329 glutaredoxin-like protein; Provisional
Probab=81.81 E-value=4.5 Score=29.20 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=22.3
Q ss_pred EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151 101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 139 (299)
Q Consensus 101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~ 139 (299)
.|...|||.|...-..| +++|+.+--+.++..
T Consensus 5 lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~ 36 (81)
T PRK10329 5 IYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRV 36 (81)
T ss_pred EEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCC
Confidence 33488999998766555 346888777777643
No 198
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=81.09 E-value=4 Score=28.30 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=21.0
Q ss_pred EeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 102 YPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 102 ~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
|..++||.|......|.+ .|+.+-.+.++.
T Consensus 5 y~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~ 34 (75)
T cd03418 5 YTKPNCPYCVRAKALLDK-------KGVDYEEIDVDG 34 (75)
T ss_pred EeCCCChHHHHHHHHHHH-------CCCcEEEEECCC
Confidence 348899999887655543 477777777654
No 199
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=80.60 E-value=19 Score=35.76 Aligned_cols=105 Identities=15% Similarity=0.104 Sum_probs=60.2
Q ss_pred chHHHHHhCCcccCCCCceeEEEEEeCCCc---EEEEEeccCCCCCCHHHHHHHHhhccCCCC-------------CCcc
Q psy16151 167 THKISLDYGVYLSDQGHTLRGLFIIDRNGV---LRQITMNDLPVGRSVDETLRLVQAFHDPLR-------------TGAI 230 (299)
Q Consensus 167 ~~~~~~~~gv~~~~~g~~~p~~~lID~dG~---I~~~~~~~~~~g~~~~evl~~l~~L~~~~~-------------g~~v 230 (299)
+.+.++.|++. ..|++.|.|.+|. |++. +.+.|..+..++..|-.+..... .+++
T Consensus 408 ~~~~~~~~~v~------~~P~~~i~~~~~~~~~i~f~---g~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~ 478 (555)
T TIGR03143 408 EPESETLPKIT------KLPTVALLDDDGNYTGLKFH---GVPSGHELNSFILALYNAAGPGQPLGEELLEKIKKITKPV 478 (555)
T ss_pred chhhHhhcCCC------cCCEEEEEeCCCcccceEEE---ecCccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCe
Confidence 46788889975 3588888876764 5555 45666666666666544432211 1222
Q ss_pred --cc-ccceeccceechHHHHHHHhhc-CceEEecc-----eee-ecccceeEEEEEEcc
Q psy16151 231 --NG-LSLLVIGLFQVTEKTCDILEDH-GVTCELRG-----RTF-IKGKGLITTYFIRQQ 280 (299)
Q Consensus 231 --n~-ast~~~~~i~~s~~~~~~L~~~-~~~~~~rg-----~~~-~k~~~~~~t~~~~~~ 280 (299)
.+ -+.+|+-|.++-+...++.... +++.+.-- ++. =-|--..|+-+++++
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i~~~ 538 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVVDDQ 538 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEECCE
Confidence 22 2889999998877777776665 45443211 111 113444566666653
No 200
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=80.57 E-value=4.3 Score=29.78 Aligned_cols=39 Identities=8% Similarity=0.004 Sum_probs=22.9
Q ss_pred CCCeEEEEEEe---CCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 93 YGKYLVFFFYP---LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 93 ~Gk~vlL~F~~---~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
+.++|+|+--. ..|||.|......|.+ .|+..-.+.++.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~i~y~~idv~~ 47 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQ-------LGVDFGTFDILE 47 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHH-------cCCCeEEEEcCC
Confidence 45666666431 1589999776655544 456666665543
No 201
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=80.21 E-value=11 Score=28.64 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEE
Q psy16151 112 TEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFII 191 (299)
Q Consensus 112 ~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lI 191 (299)
.....|++..+++++.+..-+.|++++.+.+.+..+- -...+++.....++++.+|+. .+| ++|
T Consensus 35 ~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~l--------apgl~l~P~sgddLa~rL~l~------hYP--vLi 98 (105)
T TIGR03765 35 ASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRAL--------APGLPLLPVSGDDLAERLGLR------HYP--VLI 98 (105)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH--------cCCCcccCCCHHHHHHHhCCC------ccc--EEE
Confidence 4566788888999999989899999998877665543 234566766677999999985 334 677
Q ss_pred eCCC
Q psy16151 192 DRNG 195 (299)
Q Consensus 192 D~dG 195 (299)
.++|
T Consensus 99 t~tg 102 (105)
T TIGR03765 99 TATG 102 (105)
T ss_pred ecCc
Confidence 7776
No 202
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=79.63 E-value=4.7 Score=29.01 Aligned_cols=40 Identities=10% Similarity=-0.023 Sum_probs=24.5
Q ss_pred eCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC--CHHhHHHHhhcc
Q psy16151 103 PLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD--SHFTHLAWVNTP 149 (299)
Q Consensus 103 ~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d--~~~~~~~~~~~~ 149 (299)
...+||.|...-..|. .+|+...-+.++ ..+...++++..
T Consensus 7 t~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~ 48 (80)
T COG0695 7 TKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRG 48 (80)
T ss_pred ECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHh
Confidence 3677999987765555 456665555444 333555666553
No 203
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=79.14 E-value=33 Score=34.77 Aligned_cols=127 Identities=11% Similarity=-0.000 Sum_probs=70.8
Q ss_pred ccccCCCCCCCCcEEeeeeCCCCceEEcCcc---CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHh-----------hc
Q psy16151 62 ICFKLVSKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH-----------QI 127 (299)
Q Consensus 62 ~~~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~---~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~-----------~~ 127 (299)
...+.+|..+|++.+... .+++++.|.+. .|++.|+.|-...-.+.... .|..+.+.+. ..
T Consensus 460 ~~~~~~G~r~~~~~v~~~--~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~---~l~~~~~~l~~~~~~~~~~~~~~ 534 (634)
T PRK08294 460 ATGFPIGKRFHSAPVIRL--ADAKPVHLGHAATADGRWRIYAFADAADPAGPGS---ALDALCEFLAESPDSPLRRFTPS 534 (634)
T ss_pred ccCCCCceeCCCCceeec--cCCCchhHhhhcccCCCEEEEEEcCCCCcchhHH---HHHHHHHHHhhCccchHhhcCCC
Confidence 346889999999987643 36677777653 58899998862222233333 4444444441 11
Q ss_pred C------cEEEEEeCCCH-----HhHHHHhhcccccCCCCcc-ce-eeeec--CchHHHHHhCCcccCCCCceeEEEEEe
Q psy16151 128 N------TEVVAASVDSH-----FTHLAWVNTPRKEGGLGKL-KI-PLLSD--LTHKISLDYGVYLSDQGHTLRGLFIID 192 (299)
Q Consensus 128 g------v~vi~Vs~d~~-----~~~~~~~~~~~~~~~~~~~-~~-p~l~D--~~~~~~~~~gv~~~~~g~~~p~~~lID 192 (299)
+ ++++.|...+. .++.+......... ++ .| .+..| ...++.+.||+... .-..+|+-
T Consensus 535 ~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~gi~~~-----~g~~vvvR 606 (634)
T PRK08294 535 GADIDAVIDVRAIFQQPHRELDLEDVPALLLPRKGRF---GLTDYEKVFCADLSGADIFDLRGIDRD-----RGAVVVVR 606 (634)
T ss_pred CCCCCcEEEEEEEecCCCCccchhhCcHhhCCccccc---CccchhheecCCCchhhHHHhhCCCCC-----ceeEEEEC
Confidence 1 45666644321 11122222221111 22 22 23344 23568899998532 24689999
Q ss_pred CCCcEEEEE
Q psy16151 193 RNGVLRQIT 201 (299)
Q Consensus 193 ~dG~I~~~~ 201 (299)
|||-|-++.
T Consensus 607 PD~~v~~~~ 615 (634)
T PRK08294 607 PDQYVANVL 615 (634)
T ss_pred CCCceEEEe
Confidence 999888775
No 204
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=79.02 E-value=20 Score=35.45 Aligned_cols=119 Identities=9% Similarity=-0.033 Sum_probs=71.5
Q ss_pred ccCCCCCCCCcEEeeeeCCCCceEEcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151 64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 142 (299)
Q Consensus 64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~ 142 (299)
...+|+.+|+..+. +.+|....+.++.|. ++||.|.. -|..... +... ..+...+..++.+......
T Consensus 410 ~~~~G~~~p~~~~~---~~~~~~~~~d~~~~~~~~ll~~~~---~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~-- 477 (538)
T PRK06183 410 HSPVGTLFPQPRVE---LGGGDRGLLDDVLGPGFAVLGWGC---DPLAGLS-DEQR---ARWRALGARFVQVVPAVQA-- 477 (538)
T ss_pred CCCcccCcCCCeeE---cCCCCcccchhccCCceEEEEecC---CchhcCC-HHHH---HHHHHcCCeEEEEeccccc--
Confidence 35689999998875 434444556777774 88887731 1211111 1111 2244457777777543211
Q ss_pred HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151 143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ 219 (299)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~ 219 (299)
.+ -..+.+.|.++.+++.|+.. ....+||-||+-|.... .....+.+++.+.
T Consensus 478 -~~------------~~~~~~~d~~g~~~~~~~~~-------~~~~~lvRPD~~v~~~~-----~~~~~~~~~~~l~ 529 (538)
T PRK06183 478 -HT------------AQDDHDSDVDGALRAWLARH-------GASAVLLRPDRYVAAAA-----DAQTLGALLAALA 529 (538)
T ss_pred -cc------------CCCceeecCCchHHHHHHhC-------CCEEEEECCCEEEEEee-----CHHHHHHHHHHHH
Confidence 11 12246789999999999974 24689999999998664 2224556666553
No 205
>KOG1731|consensus
Probab=78.97 E-value=0.76 Score=45.02 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=32.2
Q ss_pred eEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-cC-cEEEEEeCCC
Q psy16151 96 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-IN-TEVVAASVDS 138 (299)
Q Consensus 96 ~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-~g-v~vi~Vs~d~ 138 (299)
.-+|-|+ ++||+.|+.-.|.++++.+++.+ .+ |.|.+|..-+
T Consensus 59 ~~lVEFy-~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~ 102 (606)
T KOG1731|consen 59 AKLVEFY-NSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCAD 102 (606)
T ss_pred hHHHHHH-HhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccc
Confidence 4578887 99999999999999999998875 23 4455555433
No 206
>KOG0191|consensus
Probab=78.83 E-value=2.8 Score=39.52 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=32.7
Q ss_pred eEEEEEEeCCCCCCchhhHHHHHHHHHHHhh-cCcEEEEEeCC
Q psy16151 96 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ-INTEVVAASVD 137 (299)
Q Consensus 96 ~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~-~gv~vi~Vs~d 137 (299)
..++.|+ +.||++|....|.+.++...++. .++.+..+..+
T Consensus 164 ~~lv~f~-aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~ 205 (383)
T KOG0191|consen 164 DWLVEFY-APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT 205 (383)
T ss_pred ceEEEEe-ccccHHhhhcChHHHHHHHHhccCcceEEEeeccc
Confidence 4566665 99999999999999999998874 56777777655
No 207
>PRK06184 hypothetical protein; Provisional
Probab=78.47 E-value=17 Score=35.51 Aligned_cols=108 Identities=12% Similarity=0.025 Sum_probs=68.8
Q ss_pred ccCCCCCCCCcEEeeeeCCCCceEEcCcc-C-CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHh
Q psy16151 64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDY-Y-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFT 141 (299)
Q Consensus 64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~-~-Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~ 141 (299)
.+.+|..+|+..+. ..+|+.+++-|+ . ++++||.|-...+ .. . ...++.++.|....
T Consensus 385 ~~~~G~r~p~~~~~---~~~~~~~~l~d~~~~~~~~ll~~~~~~~--~~------~-------~~~~~~~~~~~~~~--- 443 (502)
T PRK06184 385 GLRAGDRAPDAPLL---GAAGQPTRLFDLFRGPHWTLLAFGAGAA--AI------L-------ARRGLRIHRVGDAA--- 443 (502)
T ss_pred CCCCcCCCCCchhc---cCCCceeeHHHhhCCCcEEEEEecCCch--hh------h-------hhcCceEEEecccC---
Confidence 46789999999875 335677777776 3 4799998642222 00 0 12355555543211
Q ss_pred HHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 142 HLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
. ...+.|.++.+++.|++. ....+||=|||-|.++.. ......+.+.+..+
T Consensus 444 ------~-----------~~~~~d~~g~~~~~~~~~-------~~~~~lvRPDg~v~~~~~-----~~~~~~~~~~l~~~ 494 (502)
T PRK06184 444 ------E-----------GGDLVDDAGHFRDAYGLT-------GGTLVLVRPDGYVGLIAA-----GDDAAALEAYLARV 494 (502)
T ss_pred ------C-----------CCceeCCCccHHHHhcCC-------CCcEEEECCCcceEEEec-----CCCHHHHHHHHHHh
Confidence 0 123578889999999984 246899999999988742 12566676666654
No 208
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=78.14 E-value=38 Score=28.02 Aligned_cols=121 Identities=9% Similarity=0.083 Sum_probs=70.5
Q ss_pred CCCCCCcEEeeeeCCCCceEEcCcc---CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhc----------------C
Q psy16151 68 SKPAPFWQGTAVVDGQLKEIKLSDY---YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQI----------------N 128 (299)
Q Consensus 68 G~~aPdF~L~~~~~~~G~~v~Lsd~---~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~----------------g 128 (299)
|..+|++.+... .+++++.|.+. .|++-|++|- +. ..+..+...|.++.+.+... =
T Consensus 1 G~R~~~a~V~r~--aD~~p~~L~~~~~adGrfrI~vFa-gd--~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~ 75 (167)
T cd02979 1 GRRFPSAPVVRQ--ADALPVHLGHRLPADGRFRIYVFA-GD--IAPAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSV 75 (167)
T ss_pred CCcCCCceEEEe--cCCCCHhHhhhccCCCCEEEEEEc-CC--CCchhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCc
Confidence 667888887643 37788888875 6899888886 33 22345555666666665321 1
Q ss_pred cEEEEEeCCCHH-----hHHHHhhcccccCCCCccc-eeeeecCc------hHHHHHhCCcccCCCCceeEEEEEeCCCc
Q psy16151 129 TEVVAASVDSHF-----THLAWVNTPRKEGGLGKLK-IPLLSDLT------HKISLDYGVYLSDQGHTLRGLFIIDRNGV 196 (299)
Q Consensus 129 v~vi~Vs~d~~~-----~~~~~~~~~~~~~~~~~~~-~p~l~D~~------~~~~~~~gv~~~~~g~~~p~~~lID~dG~ 196 (299)
++++.|...... ++.+......... +.. +.+..|.. +.+.+.||+... ....+|+=|||-
T Consensus 76 ~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~---~~~~~~v~~d~~~~~~~~~~~~~~~gv~~~-----~g~vvvvRPDgy 147 (167)
T cd02979 76 FDVVTIHAAPRREIELLDLPAVLRPFGEKK---GWDYEKIYADDDSYHEGHGDAYEKYGIDPE-----RGAVVVVRPDQY 147 (167)
T ss_pred EEEEEEecCCccccchhhCcHhhcCCCCcc---ccceeeEEecCccccCCcccHHHhhCCCCC-----CCCEEEECCCCe
Confidence 456666543211 1222222111110 222 23445533 678999998522 346899999998
Q ss_pred EEEEE
Q psy16151 197 LRQIT 201 (299)
Q Consensus 197 I~~~~ 201 (299)
|-++.
T Consensus 148 Vg~~~ 152 (167)
T cd02979 148 VALVG 152 (167)
T ss_pred EEEEe
Confidence 87765
No 209
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=77.87 E-value=19 Score=35.57 Aligned_cols=117 Identities=14% Similarity=0.057 Sum_probs=70.4
Q ss_pred ccCCCCCCCCcEEeeeeCCCCceEEcCccCCC-eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhH
Q psy16151 64 FKLVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 142 (299)
Q Consensus 64 ~l~~G~~aPdF~L~~~~~~~G~~v~Lsd~~Gk-~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~ 142 (299)
.+.+|..+|+..+. .+|+.++|.|+.|. ++||.|-... . . ....+.. .....++.++.+..+...
T Consensus 426 ~~~pG~r~p~~~~~----~~~~~~~l~dl~g~~f~ll~~~~~~--~---~--~~~~~~~-~~~~~~~~~~~~~~~~~~-- 491 (547)
T PRK08132 426 GPVPGAPAPDAPVR----ADGEPGWLLDLLGGGFTLLLFGDDA--A---A--AALLQAL-AAAALPVRVVAVVPAGAA-- 491 (547)
T ss_pred CCCCCCCCCCCccc----CCCCceEHHHhcCCCEEEEEecCCc--h---h--hhhhhhh-hccCCceEEEEEecCccc--
Confidence 36689999998864 25667888888664 8888774211 1 1 1111111 112234555555433211
Q ss_pred HHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151 143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~ 220 (299)
..+-..+.|.++.+++.|++. ....+||=|||-|-++... ...+.+.+.++.
T Consensus 492 --------------~~~~~~~~d~~~~~~~~~~~~-------~~~~~LvRPDg~va~~~~~-----~~~~~~~~~l~~ 543 (547)
T PRK08132 492 --------------QAAAGVLEDADGLAAERYDAR-------PGTVYLIRPDQHVAARWRT-----PDAAAVRAALAR 543 (547)
T ss_pred --------------ccCcccccCcccHHHHHhCCC-------CCeEEEECCCceEEEEecC-----CCHHHHHHHHHH
Confidence 001134678899999999984 3478999999999988522 256666666554
No 210
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=77.82 E-value=5 Score=28.28 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=19.9
Q ss_pred EeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 102 YPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 102 ~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
|...+||.|......|.+ .|+.+--+.++.
T Consensus 4 y~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~ 33 (79)
T TIGR02181 4 YTKPYCPYCTRAKALLSS-------KGVTFTEIRVDG 33 (79)
T ss_pred EecCCChhHHHHHHHHHH-------cCCCcEEEEecC
Confidence 348999999887766654 455555555543
No 211
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=77.43 E-value=1.5 Score=38.23 Aligned_cols=57 Identities=23% Similarity=0.226 Sum_probs=43.6
Q ss_pred CCCCCccccc----cceeccceechHHHHHHHhhcCceEEecceeeeccc-ceeEEEEEEcc
Q psy16151 224 PLRTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELRGRTFIKGK-GLITTYFIRQQ 280 (299)
Q Consensus 224 ~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k~~-~~~~t~~~~~~ 280 (299)
...|++||.| +--.+|.|.+|+++++.+..+...|+..|++.+||. +.+..|.+...
T Consensus 155 ~~~G~~VN~AaRLe~~a~~g~i~iS~~~~~~~~~~~~~~~~~g~~~lkg~~~~~~v~~~~~~ 216 (227)
T COG2114 155 TVVGSAVNQAARLESLAKPGQVLLSEATYDLVRDLVDLFSGLGSHRLKGLARPVRVYQLCHR 216 (227)
T ss_pred eEechHhHHHHHHHHhcCCCeEEEcHHHHHHHhhhhhhhhcCCceecCCCCCceEEEEeccc
Confidence 3458888888 223388999999999999854567889999999996 66666666554
No 212
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=76.99 E-value=6.5 Score=32.05 Aligned_cols=154 Identities=10% Similarity=0.065 Sum_probs=77.7
Q ss_pred ccccccCCCCCCCCcEEee-----e--eCCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHH-HHHhhcCcE-
Q psy16151 60 YFICFKLVSKPAPFWQGTA-----V--VDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRL-EEFHQINTE- 130 (299)
Q Consensus 60 ~~~~~l~~G~~aPdF~L~~-----~--~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~-~~~~~~gv~- 130 (299)
.....+..|+++|..-..+ + .+.+-++.+.+++.||.-||.-..+. ...-....+-+..+. .+|.....+
T Consensus 18 ~~AHnlq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGR-tsaKE~Na~lieaIk~a~fp~~~YQT 96 (184)
T COG3054 18 ASAHNLQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGR-TSAKEKNATLIEAIKSAKFPHDRYQT 96 (184)
T ss_pred HHHhhcccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcc-cchhhhchHHHHHHHhccCChHHcee
Confidence 4456788999999765431 0 01112345556778997666655333 222222222222221 112222222
Q ss_pred EEEEeCCCHH-hHHHHhhcccccCCCCccce-eeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCC
Q psy16151 131 VVAASVDSHF-THLAWVNTPRKEGGLGKLKI-PLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVG 208 (299)
Q Consensus 131 vi~Vs~d~~~-~~~~~~~~~~~~~~~~~~~~-p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g 208 (299)
---|+.||.- -.-.|.+.-.+.. -...+| .++.|..+.+-.+|++... ..+.+++|++|+|.++.-+.. ..
T Consensus 97 TTIiN~DDAi~GtgmFVkssae~~-Kke~pwSq~vlD~~gvak~AWqL~e~-----~SaivVlDk~G~VkfvkeGaL-t~ 169 (184)
T COG3054 97 TTIINTDDAIPGTGMFVKSSAESN-KKEYPWSQFVLDSNGVAKNAWQLKEE-----SSAVVVLDKDGRVKFVKEGAL-TQ 169 (184)
T ss_pred eEEeccCCccccccceeecchhhc-cccCCceeeEEccchhhhhhhccccc-----cceEEEEcCCCcEEEEecCCc-cH
Confidence 2234555421 1112222211110 013344 5667877744448998633 247899999999999984333 33
Q ss_pred CCHHHHHHHHhhc
Q psy16151 209 RSVDETLRLVQAF 221 (299)
Q Consensus 209 ~~~~evl~~l~~L 221 (299)
.++.+++..+..|
T Consensus 170 aevQ~Vi~ll~~l 182 (184)
T COG3054 170 AEVQQVIDLLQKL 182 (184)
T ss_pred HHHHHHHHHHHHh
Confidence 4566777766654
No 213
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=76.40 E-value=20 Score=29.01 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEE
Q psy16151 112 TEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFII 191 (299)
Q Consensus 112 ~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lI 191 (299)
.-...|++..+++++.+..=+.|++++.+.+.+..+- ....+++.....++++.+++. .+| +||
T Consensus 73 ~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~l--------apgl~l~P~sgddLA~rL~l~------HYP--vLI 136 (142)
T PF11072_consen 73 LSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQL--------APGLPLLPVSGDDLARRLGLS------HYP--VLI 136 (142)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHH--------cCCCeecCCCHHHHHHHhCCC------ccc--EEe
Confidence 4566788888999999999899999998877766654 234566666667999999985 334 667
Q ss_pred eCCC
Q psy16151 192 DRNG 195 (299)
Q Consensus 192 D~dG 195 (299)
...|
T Consensus 137 t~~g 140 (142)
T PF11072_consen 137 TATG 140 (142)
T ss_pred ecCC
Confidence 6665
No 214
>PRK10638 glutaredoxin 3; Provisional
Probab=75.95 E-value=6.2 Score=28.29 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=21.4
Q ss_pred EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151 101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 139 (299)
Q Consensus 101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~ 139 (299)
+|...|||.|......|.+ +|+..--+.++..
T Consensus 6 ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~ 37 (83)
T PRK10638 6 IYTKATCPFCHRAKALLNS-------KGVSFQEIPIDGD 37 (83)
T ss_pred EEECCCChhHHHHHHHHHH-------cCCCcEEEECCCC
Confidence 3447899999887765554 4666666666543
No 215
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=75.25 E-value=6 Score=32.38 Aligned_cols=40 Identities=13% Similarity=0.025 Sum_probs=30.2
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA 134 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V 134 (299)
.++..|+.|+ ...||+|...-+.+.++.+++. .++.+.-+
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~~~~~~~~~~~~~-~~v~~~~~ 53 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNFEPILEAWVKKLP-KDVKFEKV 53 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhhhHHHHHHHHhCC-CCceEEEc
Confidence 5677777777 7779999999999999988874 35555433
No 216
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=74.60 E-value=8.4 Score=26.72 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=20.6
Q ss_pred eCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 103 PLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 103 ~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
...+||.|......|.+ .|+.+-.+.++.
T Consensus 7 ~~~~C~~C~ka~~~L~~-------~gi~~~~~di~~ 35 (73)
T cd03027 7 SRLGCEDCTAVRLFLRE-------KGLPYVEINIDI 35 (73)
T ss_pred ecCCChhHHHHHHHHHH-------CCCceEEEECCC
Confidence 37889999887765554 577776676654
No 217
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=70.91 E-value=8.5 Score=29.65 Aligned_cols=63 Identities=5% Similarity=-0.014 Sum_probs=39.4
Q ss_pred EEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC--C--CHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhC
Q psy16151 100 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--D--SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG 175 (299)
Q Consensus 100 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~--d--~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~g 175 (299)
.+|...+|+.|+.....|.+ +|+.+-.+.. + +.+.+.+|++.. +.++.-+....+...+.++
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~~~~~~~el~~~~~~~-------~~~~~~l~n~~~~~~k~l~ 68 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFKQPLTKEELKEILSLT-------ENGVEDIISTRSKAFKNLN 68 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEecCCCcchHHHHHHHHHHh-------cCCHHHHHhcCcHHHHHcC
Confidence 35557889999887655544 5777666654 2 256677888765 3444444455566666665
Q ss_pred C
Q psy16151 176 V 176 (299)
Q Consensus 176 v 176 (299)
.
T Consensus 69 ~ 69 (115)
T cd03032 69 I 69 (115)
T ss_pred C
Confidence 4
No 218
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=70.59 E-value=7.1 Score=31.00 Aligned_cols=65 Identities=5% Similarity=-0.042 Sum_probs=38.5
Q ss_pred EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC--CC--HHhHHHHhhcccccCCCCccceeeeecCchHHHHHh
Q psy16151 99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--DS--HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 174 (299)
Q Consensus 99 L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~--d~--~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~ 174 (299)
|.+|...+|+.|+.....|. +.|+.+-.+.+ ++ .+.+.+|++.. +.++.-+....+...+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~-------~~gi~~~~idi~~~~~~~~eL~~~l~~~-------~~g~~~lin~~~~~~k~l 67 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLE-------EHDIPFTERNIFSSPLTIDEIKQILRMT-------EDGTDEIISTRSKVFQKL 67 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEeeccCChhhHHHHHHHHHHh-------cCCHHHHHhcCcHHHHhC
Confidence 34555889999998765444 45766655553 32 46677787764 334433444455555655
Q ss_pred CCc
Q psy16151 175 GVY 177 (299)
Q Consensus 175 gv~ 177 (299)
+..
T Consensus 68 ~~~ 70 (131)
T PRK01655 68 NVD 70 (131)
T ss_pred CCC
Confidence 543
No 219
>KOG3619|consensus
Probab=69.66 E-value=1.4 Score=45.80 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=47.6
Q ss_pred CCCCCHHHHHHHH---hhccCCCCCCccccc----cceeccceechHHHHHHHhhcCceEEec-c-ee--eecccceeEE
Q psy16151 206 PVGRSVDETLRLV---QAFHDPLRTGAINGL----SLLVIGLFQVTEKTCDILEDHGVTCELR-G-RT--FIKGKGLITT 274 (299)
Q Consensus 206 ~~g~~~~evl~~l---~~L~~~~~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~~~~r-g-~~--~~k~~~~~~t 274 (299)
+.|.|.+.++.++ +.++...|+..|-.| +.|.||+.|+|+.|.+.|.. -|+.|.. | +- +.| +=.++|
T Consensus 207 rvGihsG~Vl~GvlG~~kwq~DVws~dv~lAn~mEs~G~pgrVhis~~Tl~~L~g-~yeve~g~g~~r~~~l~-~~~~~t 284 (867)
T KOG3619|consen 207 RVGIHSGSVLCGVLGLRKWQYDVWSNDVTLANHMEAGGVPGRVHISKATLDCLNG-EYEVEPGHGGERDPYLK-EHGIET 284 (867)
T ss_pred EEEEecCceeecccccceeeeeeccchhhhhhhhhhcCCCceeEechhHHHHhCC-CceeecCCCcccchHHH-hcCCce
Confidence 3444555565555 445556678888666 89999999999999999976 3433321 1 10 111 235789
Q ss_pred EEEEccc
Q psy16151 275 YFIRQQE 281 (299)
Q Consensus 275 ~~~~~~~ 281 (299)
|++....
T Consensus 285 y~i~~~~ 291 (867)
T KOG3619|consen 285 YLIIPPS 291 (867)
T ss_pred EEecccc
Confidence 9998743
No 220
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=68.43 E-value=6.5 Score=33.65 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=27.5
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHH---HHHHHHHhhcCcEEEEE
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAF---NDRLEEFHQINTEVVAA 134 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l---~~l~~~~~~~gv~vi~V 134 (299)
.|++.|+.|+ ...||+|...-+.+ ..+.+.+.+ ++.++-+
T Consensus 36 ~~~~~VvEff-dy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~ 78 (207)
T PRK10954 36 AGEPQVLEFF-SFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKY 78 (207)
T ss_pred CCCCeEEEEe-CCCCccHHHhcccccchHHHHHhCCC-CCeEEEe
Confidence 4777788887 66799999876655 666666653 5555433
No 221
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=67.38 E-value=42 Score=32.95 Aligned_cols=38 Identities=18% Similarity=0.020 Sum_probs=24.4
Q ss_pred CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE
Q psy16151 95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA 134 (299)
Q Consensus 95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V 134 (299)
+++-|..|.+..||+|+.....++++..+.. ++..-.|
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~i 153 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMI 153 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEE
Confidence 5554444448889999988888877765433 4444333
No 222
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=65.80 E-value=8.3 Score=29.02 Aligned_cols=42 Identities=5% Similarity=-0.130 Sum_probs=26.2
Q ss_pred EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC----CHHhHHHHhhcc
Q psy16151 101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD----SHFTHLAWVNTP 149 (299)
Q Consensus 101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d----~~~~~~~~~~~~ 149 (299)
+|...+||.|+.....|.+ +|+.+-.+.+. +.+.+.+|....
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 3 IYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 4558889999887655554 46655555442 245566666554
No 223
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=65.70 E-value=8.1 Score=29.59 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=27.2
Q ss_pred EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC--C--CHHhHHHHhhcc
Q psy16151 101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--D--SHFTHLAWVNTP 149 (299)
Q Consensus 101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~--d--~~~~~~~~~~~~ 149 (299)
+|...+||.|+.....|.+ +|+.+-.+.+ + +.+.+.+|.+..
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~ 48 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKS 48 (111)
T ss_pred EEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHc
Confidence 4457889999887765554 4666555543 3 355677777654
No 224
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=64.41 E-value=16 Score=30.43 Aligned_cols=38 Identities=13% Similarity=0.070 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcc
Q psy16151 112 TEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP 149 (299)
Q Consensus 112 ~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 149 (299)
.-.|++.++.++++++|+.++.+|-+++.....|.+.+
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l 83 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKL 83 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhc
Confidence 55788999999999999999999999998888898866
No 225
>PRK10824 glutaredoxin-4; Provisional
Probab=64.26 E-value=14 Score=28.65 Aligned_cols=26 Identities=4% Similarity=-0.007 Sum_probs=16.9
Q ss_pred CCeEEEEEEeC----CCCCCchhhHHHHHHH
Q psy16151 94 GKYLVFFFYPL----DFTFVCPTEILAFNDR 120 (299)
Q Consensus 94 Gk~vlL~F~~~----~~cp~C~~~~~~l~~l 120 (299)
.++|+|+.- + .|||+|.....-|.++
T Consensus 14 ~~~Vvvf~K-g~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 14 ENPILLYMK-GSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred cCCEEEEEC-CCCCCCCCchHHHHHHHHHHc
Confidence 345666543 4 4999998877655543
No 226
>PRK12559 transcriptional regulator Spx; Provisional
Probab=61.95 E-value=15 Score=29.23 Aligned_cols=64 Identities=6% Similarity=0.026 Sum_probs=38.3
Q ss_pred EEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC--C--CHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhC
Q psy16151 100 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--D--SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG 175 (299)
Q Consensus 100 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~--d--~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~g 175 (299)
.+|...+|+.|+.....|. ++|+.+-.+.. + +.+.+.+|++.. +.++.-+....+...+.++
T Consensus 3 ~iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~~~~~s~~el~~~l~~~-------~~g~~~lin~~~~~~k~l~ 68 (131)
T PRK12559 3 VLYTTASCASCRKAKAWLE-------ENQIDYTEKNIVSNSMTVDELKSILRLT-------EEGATEIISTRSKTFQDLN 68 (131)
T ss_pred EEEeCCCChHHHHHHHHHH-------HcCCCeEEEEeeCCcCCHHHHHHHHHHc-------CCCHHHHHhcCcHHHHhCC
Confidence 3555888999998765444 45666555543 3 467788888764 3333333344455566665
Q ss_pred Cc
Q psy16151 176 VY 177 (299)
Q Consensus 176 v~ 177 (299)
..
T Consensus 69 ~~ 70 (131)
T PRK12559 69 IN 70 (131)
T ss_pred CC
Confidence 43
No 227
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=61.24 E-value=12 Score=28.77 Aligned_cols=62 Identities=10% Similarity=-0.042 Sum_probs=35.9
Q ss_pred EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC----HHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCC
Q psy16151 101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS----HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 176 (299)
Q Consensus 101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~----~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv 176 (299)
+|....||.|+.....|.+ .|+.+..+.... .+.+.+|++.. +..+.-+....+...+.++.
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~-------~~~~~~lin~~~~~~k~l~~ 68 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLL-------EDGIDPLLNTRGQSYRALNT 68 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHc-------CCCHHHheeCCCcchhhCCc
Confidence 4447789999887765554 577766666532 44566666654 33333333344555555553
No 228
>KOG4277|consensus
Probab=60.48 E-value=3.7 Score=37.28 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=27.8
Q ss_pred eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcE
Q psy16151 96 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTE 130 (299)
Q Consensus 96 ~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~ 130 (299)
..++.|+ +.||..|...-|-..+.-.++++-|.-
T Consensus 45 iW~VdFY-APWC~HCKkLePiWdeVG~elkdig~P 78 (468)
T KOG4277|consen 45 IWFVDFY-APWCAHCKKLEPIWDEVGHELKDIGLP 78 (468)
T ss_pred eEEEEee-chhhhhcccccchhHHhCcchhhcCCc
Confidence 5788888 999999999988888887777766543
No 229
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=59.44 E-value=29 Score=26.76 Aligned_cols=67 Identities=10% Similarity=0.189 Sum_probs=47.1
Q ss_pred ceeEEEEEeCCCcEEEEEe------ccCCCCCCHHHHHHHHhhccCCCCCCccccccceeccceechHHHHHHHhhcCc
Q psy16151 184 TLRGLFIIDRNGVLRQITM------NDLPVGRSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQVTEKTCDILEDHGV 256 (299)
Q Consensus 184 ~~p~~~lID~dG~I~~~~~------~~~~~g~~~~evl~~l~~L~~~~~g~~vn~ast~~~~~i~~s~~~~~~L~~~~~ 256 (299)
....-++|-+||+|-.+.- ++.......+++-..+. .+.++-.-.||..|...+++++.+.+++.+.
T Consensus 18 ~f~~DIvi~~dG~v~rr~K~lskrK~GTSHkl~~eEle~~le------e~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~ 90 (121)
T COG1504 18 DFEHDIVIRPDGKVERREKELSKRKYGTSHKLALEELEELLE------EGPEVIVVGTGQSGMLELSEEAREFFRKKGC 90 (121)
T ss_pred eccccEEEecCCceehhhhhhhhhhcCcccccCHHHHHHHHh------cCCcEEEEecCceeEEEeCHHHHHHHHhcCC
Confidence 3456789999999965543 12222234555555554 3566777799999999999999999988763
No 230
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=57.58 E-value=81 Score=30.99 Aligned_cols=30 Identities=17% Similarity=-0.005 Sum_probs=20.6
Q ss_pred CeE-EEEEEeCCCCCCchhhHHHHHHHHHHHh
Q psy16151 95 KYL-VFFFYPLDFTFVCPTEILAFNDRLEEFH 125 (299)
Q Consensus 95 k~v-lL~F~~~~~cp~C~~~~~~l~~l~~~~~ 125 (299)
+++ +..|. +..||+|+.....++++..+..
T Consensus 117 ~~~~i~~f~-~~~Cp~Cp~~v~~~~~~a~~~p 147 (515)
T TIGR03140 117 GPLHFETYV-SLTCQNCPDVVQALNQMALLNP 147 (515)
T ss_pred CCeEEEEEE-eCCCCCCHHHHHHHHHHHHhCC
Confidence 455 55555 8889999987777777655533
No 231
>KOG0911|consensus
Probab=57.06 E-value=12 Score=32.50 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=33.9
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
+++..++.|| +.||.+|......+..+.+.+ .+++++-+..+.
T Consensus 16 ~~~~~~~~f~-a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~ 58 (227)
T KOG0911|consen 16 KGKLLVLHFW-AIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEE 58 (227)
T ss_pred ccchhhhhhh-hhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhh
Confidence 7788999999 999999988877777777776 466666665554
No 232
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.22 E-value=33 Score=29.85 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=33.1
Q ss_pred CCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcE
Q psy16151 83 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTE 130 (299)
Q Consensus 83 ~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~ 130 (299)
+++.+..-+..++++++.|+ -.-||.|...++.+.+.+....+..+.
T Consensus 73 ~~~~~~~G~~~~~v~v~~f~-d~~Cp~C~~~~~~l~~~~i~~~~~~~~ 119 (244)
T COG1651 73 DGKDVVLGNPYAPVTVVEFF-DYTCPYCKEAFPELKKKYIDDGKVRLV 119 (244)
T ss_pred CCCcccccCCCCCceEEEEe-cCcCccHHHHHHHHHHHhhhcCCCceE
Confidence 45555555555677777776 667999999999999877666654433
No 233
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=53.45 E-value=27 Score=27.71 Aligned_cols=63 Identities=8% Similarity=0.057 Sum_probs=38.8
Q ss_pred EEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC----CHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhC
Q psy16151 100 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD----SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYG 175 (299)
Q Consensus 100 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d----~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~g 175 (299)
.+|...+|+.|+.....| +++|+.+-.+... +.+.+.+|++.. +.++.-+....+...+.++
T Consensus 3 ~iY~~~~C~~crkA~~~L-------~~~~i~~~~~d~~~~~~s~~eL~~~l~~~-------~~~~~~lin~~~~~~k~L~ 68 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWL-------NAHQLSYKEQNLGKEPLTKEEILAILTKT-------ENGIESIVSSKNRYAKALD 68 (132)
T ss_pred EEEeCCCCHHHHHHHHHH-------HHcCCCeEEEECCCCCCCHHHHHHHHHHh-------CCCHHHhhccCcHHHHhCC
Confidence 344578899998865444 4457776666542 367788898875 4444444444555666555
Q ss_pred C
Q psy16151 176 V 176 (299)
Q Consensus 176 v 176 (299)
.
T Consensus 69 ~ 69 (132)
T PRK13344 69 C 69 (132)
T ss_pred c
Confidence 4
No 234
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=52.54 E-value=20 Score=25.31 Aligned_cols=33 Identities=12% Similarity=-0.093 Sum_probs=23.4
Q ss_pred EeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEe
Q psy16151 102 YPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS 135 (299)
Q Consensus 102 ~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs 135 (299)
|....||.|....+.+.++..... .++.+.-+.
T Consensus 4 f~d~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~ 36 (98)
T cd02972 4 FFDPLCPYCYLFEPELEKLLYADD-GGVRVVYRP 36 (98)
T ss_pred EECCCCHhHHhhhHHHHHHHhhcC-CcEEEEEec
Confidence 338889999999999998874333 356655443
No 235
>PTZ00062 glutaredoxin; Provisional
Probab=52.43 E-value=30 Score=29.77 Aligned_cols=39 Identities=8% Similarity=0.065 Sum_probs=22.7
Q ss_pred CCCeEEEEEEeC---CCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 93 YGKYLVFFFYPL---DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 93 ~Gk~vlL~F~~~---~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
..++|+|+---. .+||.|......|. +.|+....+.++.
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~-------~~~i~y~~~DI~~ 152 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRFSNAVVNMLN-------SSGVKYETYNIFE 152 (204)
T ss_pred hcCCEEEEEccCCCCCCChhHHHHHHHHH-------HcCCCEEEEEcCC
Confidence 446777776522 46777766554444 3466666666553
No 236
>KOG0914|consensus
Probab=51.63 E-value=10 Score=32.94 Aligned_cols=77 Identities=10% Similarity=0.193 Sum_probs=49.7
Q ss_pred CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHh
Q psy16151 95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 174 (299)
Q Consensus 95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~ 174 (299)
++.||.|| +.|.|-|....|-+.++..+|...++.+=-|.+. .| .+++..|
T Consensus 145 t~WlIeFf-a~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG---------------------rf-------pd~a~kf 195 (265)
T KOG0914|consen 145 TYWLIEFF-ACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG---------------------RF-------PDVAAKF 195 (265)
T ss_pred eEEEEEEE-eecChhhcccccccHHHHHHhCCCCCcccceeec---------------------cC-------cChHHhe
Confidence 47788888 9999999999999999988887544332111111 01 2355667
Q ss_pred CCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 175 GVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 175 gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
+|.........|+.+|. .+|+-+.+.
T Consensus 196 ris~s~~srQLPT~ilF-q~gkE~~Rr 221 (265)
T KOG0914|consen 196 RISLSPGSRQLPTYILF-QKGKEVSRR 221 (265)
T ss_pred eeccCcccccCCeEEEE-ccchhhhcC
Confidence 76544322356777777 677766554
No 237
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=50.81 E-value=27 Score=31.05 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=22.8
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhh
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~ 126 (299)
.||+.+++.. +.|||.|..+-=.|-.....|..
T Consensus 57 ~Gk~~v~~ig-w~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIG-WEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEe-cccCccchhhHHHHHHHHHhcCC
Confidence 5776655554 89999999886556555566653
No 238
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=50.74 E-value=90 Score=25.67 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=43.8
Q ss_pred CCCCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC---HHhHHHHhhccccc
Q psy16151 81 DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS---HFTHLAWVNTPRKE 152 (299)
Q Consensus 81 ~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~---~~~~~~~~~~~~~~ 152 (299)
|.|| +++.||..|..+-+ .. ..|+ -+...+++..+.+.|..++-+|.-+ ....+.|++..++.
T Consensus 5 DIDG-TiT~SD~~G~i~~~-~G-~d~~------h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~ 70 (157)
T PF08235_consen 5 DIDG-TITKSDVLGHILPI-LG-KDWT------HPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQ 70 (157)
T ss_pred eccC-CcCccchhhhhhhc-cC-chhh------hhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhC
Confidence 4454 58999988873222 22 2333 3566778888999999999998765 55678899887443
No 239
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=50.53 E-value=46 Score=25.46 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=33.1
Q ss_pred eEEcCccCC-CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC
Q psy16151 86 EIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV 136 (299)
Q Consensus 86 ~v~Lsd~~G-k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~ 136 (299)
.-.+++|.+ ..-|+-|+ .|..|+ -..+....+++++.|+++|-+++
T Consensus 27 ~g~F~~y~~~~~elvgf~---~CgGCp--g~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 27 KGAFARYDDEDVELVGFF---TCGGCP--GRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred cCccccCCCCCeEEEEEe---eCCCCC--hhHHHHHHHHHHHCCCCEEEEcC
Confidence 345777775 46677776 466666 55677777788888999999875
No 240
>PRK10026 arsenate reductase; Provisional
Probab=49.40 E-value=67 Score=25.89 Aligned_cols=95 Identities=7% Similarity=0.009 Sum_probs=51.1
Q ss_pred EEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEe--CC--CHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCC
Q psy16151 101 FYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS--VD--SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 176 (299)
Q Consensus 101 F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs--~d--~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv 176 (299)
+|.-.-|..|+.....|.+ .|+.+-.+. .+ +.+.+..|++.. +.+..-+....+..++.++.
T Consensus 6 iY~~p~Cst~RKA~~wL~~-------~gi~~~~~d~~~~ppt~~eL~~~l~~~-------g~~~~~lint~~~~yr~L~~ 71 (141)
T PRK10026 6 IYHNPACGTSRNTLEMIRN-------SGTEPTIIHYLETPPTRDELVKLIADM-------GISVRALLRKNVEPYEELGL 71 (141)
T ss_pred EEeCCCCHHHHHHHHHHHH-------CCCCcEEEeeeCCCcCHHHHHHHHHhC-------CCCHHHHHHcCCchHHHcCC
Confidence 4445668889887765554 465555554 33 367788898865 33222222223444444443
Q ss_pred cccC------------CCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151 177 YLSD------------QGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV 218 (299)
Q Consensus 177 ~~~~------------~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l 218 (299)
.... .+.....=+|++.+|.++.+ ..+.++..+
T Consensus 72 ~~~~ls~~e~l~ll~~~P~LIKRPIi~~~~~a~i~R---------p~e~v~~~l 116 (141)
T PRK10026 72 AEDKFTDDQLIDFMLQHPILINRPIVVTPLGTRLCR---------PSEVVLEIL 116 (141)
T ss_pred CccCCCHHHHHHHHHhCccceeCcEEEcCCCeEEEC---------CHHHHHHHh
Confidence 2210 11223344777777766533 456666666
No 241
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=49.21 E-value=14 Score=26.49 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=33.0
Q ss_pred EEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeec
Q psy16151 100 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD 165 (299)
Q Consensus 100 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D 165 (299)
.|+....|+.|..--..|.++. .+.++.+-.|.+++.+ +|.+.+ +...|++.-
T Consensus 3 ~l~~k~~C~LC~~a~~~L~~~~---~~~~~~l~~vDI~~d~---~l~~~Y-------~~~IPVl~~ 55 (81)
T PF05768_consen 3 TLYTKPGCHLCDEAKEILEEVA---AEFPFELEEVDIDEDP---ELFEKY-------GYRIPVLHI 55 (81)
T ss_dssp EEEE-SSSHHHHHHHHHHHHCC---TTSTCEEEEEETTTTH---HHHHHS-------CTSTSEEEE
T ss_pred EEEcCCCCChHHHHHHHHHHHH---hhcCceEEEEECCCCH---HHHHHh-------cCCCCEEEE
Confidence 4444777999987666665532 2346888888887543 366665 556666643
No 242
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=48.39 E-value=45 Score=30.10 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=41.1
Q ss_pred CCCCCcEEeeeeCCCCceEEcCccC--CCeEEEEEEeCCCCCCchhhHHHH-HHHHHHHh--hcCcEEEEEeCCCHHhHH
Q psy16151 69 KPAPFWQGTAVVDGQLKEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAF-NDRLEEFH--QINTEVVAASVDSHFTHL 143 (299)
Q Consensus 69 ~~aPdF~L~~~~~~~G~~v~Lsd~~--Gk~vlL~F~~~~~cp~C~~~~~~l-~~l~~~~~--~~gv~vi~Vs~d~~~~~~ 143 (299)
+.+|-|.+. |.+|.++-.++-. ++.+.++|+ |..+...+ .++...-. ..+++|..|+.+....+.
T Consensus 73 ~~VPVF~it---n~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~~vY~l~ 142 (274)
T PF04278_consen 73 AGVPVFTIT---NSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPELASGAKVVPVSLGKVYQLA 142 (274)
T ss_dssp TTSEEEEEE----TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHHHHHHHH
T ss_pred cCceEEEEE---CCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccccCceEEEEecHHHHHHHH
Confidence 457888876 8899998777665 566666654 44444333 33333222 358999999998765543
Q ss_pred HHhhcccccCCCCccceeeeecCc
Q psy16151 144 AWVNTPRKEGGLGKLKIPLLSDLT 167 (299)
Q Consensus 144 ~~~~~~~~~~~~~~~~~p~l~D~~ 167 (299)
.-.+. +. .++.|.++.|+.
T Consensus 143 ~~~~~-k~----~~~~F~~vP~~~ 161 (274)
T PF04278_consen 143 QENKK-KP----EGLQFRFVPDPK 161 (274)
T ss_dssp HHTTT--T----T-EEEEEE--HH
T ss_pred HHhhc-CC----cCceEEEcCCHH
Confidence 21111 11 278999999974
No 243
>PHA03075 glutaredoxin-like protein; Provisional
Probab=47.13 E-value=18 Score=28.14 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=28.2
Q ss_pred CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE
Q psy16151 95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA 134 (299)
Q Consensus 95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V 134 (299)
|.++|.|. -..|+.|......|.++.++|.=..+.++.+
T Consensus 2 K~tLILfG-KP~C~vCe~~s~~l~~ledeY~ilrVNIlSf 40 (123)
T PHA03075 2 KKTLILFG-KPLCSVCESISEALKELEDEYDILRVNILSF 40 (123)
T ss_pred CceEEEeC-CcccHHHHHHHHHHHHhhccccEEEEEeeee
Confidence 56788887 7889999988888877777665444444444
No 244
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=44.97 E-value=47 Score=23.06 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=25.6
Q ss_pred CCceEEcCccCCCeEEEEEEeCCCCCCchhhHHHHH
Q psy16151 83 QLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFN 118 (299)
Q Consensus 83 ~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~ 118 (299)
+|..+.+-++.+..|.|-|- ++ |..|+.....+.
T Consensus 15 dGGdv~lv~v~~~~V~V~l~-Ga-C~gC~~s~~Tl~ 48 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRLT-GA-CSGCPSSDMTLK 48 (68)
T ss_dssp TTEEEEEEEEETTEEEEEEE-SS-CCSSCCHHHHHH
T ss_pred cCCcEEEEEecCCEEEEEEE-eC-CCCCCCHHHHHH
Confidence 78889999998887777775 77 667876655563
No 245
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=44.48 E-value=31 Score=26.14 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=28.5
Q ss_pred EEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeC--C--CHHhHHHHhhcc
Q psy16151 100 FFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASV--D--SHFTHLAWVNTP 149 (299)
Q Consensus 100 ~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~--d--~~~~~~~~~~~~ 149 (299)
.+|...+|+.|+.....|.+ +|+.+-.+.. + +.+.+.+|++..
T Consensus 2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~~ 48 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAKV 48 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHHh
Confidence 34558889999987755554 4666555543 3 467788888754
No 246
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=43.71 E-value=1.6e+02 Score=23.43 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=24.7
Q ss_pred ceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhh
Q psy16151 184 TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220 (299)
Q Consensus 184 ~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~ 220 (299)
+.|+.-|+ +||++++..-...-.|++.+.+.+.|..
T Consensus 95 SSPS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~ 130 (136)
T PF06491_consen 95 SSPSIALF-KDGELVHFIERHHIEGRPAEEIAENLQD 130 (136)
T ss_dssp -SSEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHH
T ss_pred CCchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHH
Confidence 45788888 8999998875444466777777776654
No 247
>PRK12359 flavodoxin FldB; Provisional
Probab=43.61 E-value=71 Score=26.62 Aligned_cols=43 Identities=12% Similarity=-0.043 Sum_probs=21.8
Q ss_pred ccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEE
Q psy16151 91 DYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAA 134 (299)
Q Consensus 91 d~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~V 134 (299)
+++||.+. .|..+.+..........+..+++.++++|.++++-
T Consensus 76 dl~gK~vA-lFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~ 118 (172)
T PRK12359 76 NLEGKIVA-LYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGY 118 (172)
T ss_pred CCCCCEEE-EEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEee
Confidence 46666554 44334332223333445555666666666665553
No 248
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=43.38 E-value=2.8 Score=35.13 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=24.1
Q ss_pred CCCccccc----cceeccceechHHHHHHHhhcCce
Q psy16151 226 RTGAINGL----SLLVIGLFQVTEKTCDILEDHGVT 257 (299)
Q Consensus 226 ~g~~vn~a----st~~~~~i~~s~~~~~~L~~~~~~ 257 (299)
+|++||.| +...+|+|.+|+++.+.|+.+.+.
T Consensus 156 ~G~~vn~AarL~~~a~~g~i~vs~~~~~~l~~~~~~ 191 (194)
T smart00044 156 FGDTVNLASRMESVGDPGQILVSEETYSLLRRRGPR 191 (194)
T ss_pred eChHHHHHHHHHhcCCCCeEEECHHHHHHHHhhCCC
Confidence 36677766 445588999999999999765543
No 249
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=43.33 E-value=1.2e+02 Score=28.12 Aligned_cols=91 Identities=16% Similarity=0.065 Sum_probs=53.6
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC-----HHhHHHHhhcccccCCCCccce---eeee
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS-----HFTHLAWVNTPRKEGGLGKLKI---PLLS 164 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~-----~~~~~~~~~~~~~~~~~~~~~~---p~l~ 164 (299)
.+|+.|+.|. +-.-..=++. +.++...|++.|..|+....|+ .+.++.|.++. +.++ +--+
T Consensus 136 ~~~p~Vil~v-GVNG~GKTTT---IaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~-------gv~vI~~~~G~ 204 (340)
T COG0552 136 EKKPFVILFV-GVNGVGKTTT---IAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL-------GVPVISGKEGA 204 (340)
T ss_pred CCCcEEEEEE-ecCCCchHhH---HHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHh-------CCeEEccCCCC
Confidence 4567777776 5544333343 5666677788899999999998 44577888765 3332 2234
Q ss_pred cCchHHHHHhCCcccCCCCceeEEEEEeCCCcEE
Q psy16151 165 DLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLR 198 (299)
Q Consensus 165 D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~ 198 (299)
||..-+..+..-... .| --.+|||-.||..
T Consensus 205 DpAaVafDAi~~Aka-r~---~DvvliDTAGRLh 234 (340)
T COG0552 205 DPAAVAFDAIQAAKA-RG---IDVVLIDTAGRLH 234 (340)
T ss_pred CcHHHHHHHHHHHHH-cC---CCEEEEeCccccc
Confidence 554332222221100 01 1368999999976
No 250
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=40.98 E-value=52 Score=31.45 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=23.9
Q ss_pred eCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhh
Q psy16151 103 PLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVN 147 (299)
Q Consensus 103 ~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~ 147 (299)
..+|||.|...-..|. ++|+..-.|.+|......++.+
T Consensus 8 s~~~Cp~C~~aK~~L~-------~~gi~~~~idi~~~~~~~~~~~ 45 (410)
T PRK12759 8 TKTNCPFCDLAKSWFG-------ANDIPFTQISLDDDVKRAEFYA 45 (410)
T ss_pred eCCCCHHHHHHHHHHH-------HCCCCeEEEECCCChhHHHHHH
Confidence 4899999987655444 3577766677764433344433
No 251
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=40.62 E-value=54 Score=28.06 Aligned_cols=47 Identities=11% Similarity=0.164 Sum_probs=34.0
Q ss_pred EEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEe-CCCHHhHHHHhhcc
Q psy16151 97 LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS-VDSHFTHLAWVNTP 149 (299)
Q Consensus 97 vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs-~d~~~~~~~~~~~~ 149 (299)
-+.+|. -..|+.|...+..+.. ....+.|+.|. -.+...+..|...+
T Consensus 111 rlalFv-kd~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~ 158 (200)
T TIGR03759 111 RLALFV-KDDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRH 158 (200)
T ss_pred eEEEEe-CCCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHc
Confidence 466666 4789999888776633 34567888775 45678899999886
No 252
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=39.93 E-value=1.5e+02 Score=26.61 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=48.7
Q ss_pred CCCCCcEEeeeeCCCCceEEcCccCCCeEEEEEEeCCCCCCchhh--HHHHHHHHHHHh--hcCcEEEEEeCCCHHhHHH
Q psy16151 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTE--ILAFNDRLEEFH--QINTEVVAASVDSHFTHLA 144 (299)
Q Consensus 69 ~~aPdF~L~~~~~~~G~~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~--~~~l~~l~~~~~--~~gv~vi~Vs~d~~~~~~~ 144 (299)
+.+|-|++. |.+|.++-.++-.|..+.-.|+ . +.+ ...|.++...-. +.+++|+.|+.+....+
T Consensus 80 ~~VPVFtIt---n~~G~pvl~s~~~~~~~~gvf~-----s--~qedA~afL~~lk~~~p~l~~~~kV~pvsL~~vYkl-- 147 (270)
T TIGR00995 80 AGTSVFTVS---NAQNEFVLASDNDGEKSIGLLC-----F--RQEDAEAFLAQLRKRKPEVGSQAKVVPITLDQVYKL-- 147 (270)
T ss_pred cCCceEEEE---cCCCCeEEEECCCCCceEEEEE-----C--CHHHHHHHHHHHHhhCccccCCceEEEEEHHHHHHH--
Confidence 568889976 8899998888666654444443 1 122 222333322222 24789999999877644
Q ss_pred HhhcccccCCCCccceeeeecCc
Q psy16151 145 WVNTPRKEGGLGKLKIPLLSDLT 167 (299)
Q Consensus 145 ~~~~~~~~~~~~~~~~p~l~D~~ 167 (299)
..+ ++.|.++.|+.
T Consensus 148 -~~e--------~l~F~fiP~~~ 161 (270)
T TIGR00995 148 -KVE--------GIGFRFLPDPA 161 (270)
T ss_pred -hhc--------CccEEEeCCHH
Confidence 221 68899999964
No 253
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.85 E-value=88 Score=31.84 Aligned_cols=93 Identities=14% Similarity=0.054 Sum_probs=51.3
Q ss_pred CCCeEEEEEEeCCCCCCchhhH------HHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecC
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEI------LAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL 166 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~------~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~ 166 (299)
.+||++|... .+||-.|.-.. |.++++. |-.+|.|-+|..+. .|.
T Consensus 42 edkPIflSIG-ys~CHWChVM~~ESf~d~eiA~~l------N~~FV~IKVDREER----------------------PDv 92 (667)
T COG1331 42 EDKPILLSIG-YSTCHWCHVMAHESFEDPEIAAIL------NENFVPVKVDREER----------------------PDV 92 (667)
T ss_pred hCCCEEEEec-cccccchHHHhhhcCCCHHHHHHH------HhCceeeeEChhhc----------------------cCH
Confidence 5799999998 77899997543 1122211 12344455543220 111
Q ss_pred c---hHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCC---C-CCHHHHHHHHh
Q psy16151 167 T---HKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPV---G-RSVDETLRLVQ 219 (299)
Q Consensus 167 ~---~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~---g-~~~~evl~~l~ 219 (299)
+ +.++...... | ..|-++++-|||+..+...+-... + +...+++..|.
T Consensus 93 D~~Ym~~~q~~tG~----G-GWPLtVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~ 147 (667)
T COG1331 93 DSLYMNASQAITGQ----G-GWPLTVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIR 147 (667)
T ss_pred HHHHHHHHHHhccC----C-CCceeEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHH
Confidence 1 3333333332 2 468899999999999887653332 1 23455555443
No 254
>KOG2116|consensus
Probab=39.39 E-value=73 Score=32.30 Aligned_cols=53 Identities=6% Similarity=0.058 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhcCcEEEEEeCC---CHHhHHHHhhcccccCCCCccceeeeecCch
Q psy16151 115 LAFNDRLEEFHQINTEVVAASVD---SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH 168 (299)
Q Consensus 115 ~~l~~l~~~~~~~gv~vi~Vs~d---~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 168 (299)
...++||.+.+..|.+++.+|.- -.+..+.|++...+++ ..-..=|++..|++
T Consensus 561 ~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG-~~LPdGPViLSPd~ 616 (738)
T KOG2116|consen 561 TGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDG-KKLPDGPVILSPDS 616 (738)
T ss_pred hhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcC-ccCCCCCEEeCCCc
Confidence 35678899999999999999853 3566777777765442 22334577776654
No 255
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=39.14 E-value=28 Score=28.84 Aligned_cols=43 Identities=28% Similarity=0.396 Sum_probs=30.1
Q ss_pred hHHHHHHHhhcCceEEecc-eeeecccceeEEEEEEccccccccccCCCcccccccC
Q psy16151 244 TEKTCDILEDHGVTCELRG-RTFIKGKGLITTYFIRQQEIEKFQKINIDSKSYMKIH 299 (299)
Q Consensus 244 s~~~~~~L~~~~~~~~~rg-~~~~k~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (299)
..-+.+.|...|+...++| .++++|+-..-. +-..|.+++|||
T Consensus 91 v~i~~E~l~~~gv~~~ReGDDly~~grKLtVs-------------Iat~s~vs~kiH 134 (189)
T COG2029 91 VAILKEVLEKLGVDLSREGDDLYVEGRKLTVS-------------IATVSPVSSKIH 134 (189)
T ss_pred HHHHHHHHHHhCCcccccCCceeecCcEEEEE-------------EEecCCcceeEE
Confidence 4556677888999999999 888887654333 234455677776
No 256
>PF10916 DUF2712: Protein of unknown function (DUF2712); InterPro: IPR020208 This entry represents a group of uncharacterised proteins.
Probab=36.74 E-value=21 Score=28.71 Aligned_cols=11 Identities=45% Similarity=0.981 Sum_probs=10.4
Q ss_pred cccceeEEEEE
Q psy16151 267 KGKGLITTYFI 277 (299)
Q Consensus 267 k~~~~~~t~~~ 277 (299)
.|||.|.||||
T Consensus 73 EGkGTi~tfwL 83 (146)
T PF10916_consen 73 EGKGTIYTFWL 83 (146)
T ss_pred cccceEEEEee
Confidence 59999999999
No 257
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=34.81 E-value=1.3e+02 Score=22.81 Aligned_cols=60 Identities=5% Similarity=-0.098 Sum_probs=35.0
Q ss_pred EEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEecc
Q psy16151 130 EVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMND 204 (299)
Q Consensus 130 ~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~ 204 (299)
.-+++.+++.++..++.+.+++. ++. +...+... ....+. ....++.||||..+..+..+
T Consensus 61 ~~iaf~v~~~~dv~~~~~~l~~~----G~~--~~~~~~~~-~~~~~~--------~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 61 QASGFELRDDDALESAATELEQY----GHE--VRRGTAEE-CELRKV--------KAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred EEEEEEECCHHHHHHHHHHHHHc----CCc--eEEcCHHH-hhcCCc--------ceEEEEECcCCCEEEEEEee
Confidence 34677788877777777776444 433 33332211 111222 13568999999988776443
No 258
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=33.92 E-value=49 Score=33.48 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=43.9
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHhhccCC---CCCCcc-------ccc---cceeccceechHHHHHHHhhcCceEEec
Q psy16151 195 GVLRQITMNDLPVGRSVDETLRLVQAFHDP---LRTGAI-------NGL---SLLVIGLFQVTEKTCDILEDHGVTCELR 261 (299)
Q Consensus 195 G~I~~~~~~~~~~g~~~~evl~~l~~L~~~---~~g~~v-------n~a---st~~~~~i~~s~~~~~~L~~~~~~~~~r 261 (299)
|++++...++...++++....+.+ .-+ .||=|. |.+ --|..|.+-.. --+.+-.+
T Consensus 353 gri~~~~sGGa~l~~~~~~f~~~l---Gi~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~---------~evKI~d~ 420 (613)
T COG1022 353 GRIRYALSGGAPLSPELLHFFRSL---GIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPG---------IEVKIADD 420 (613)
T ss_pred CcEEEEEecCCcCCHHHHHHHHHc---CCCeEEEecccccccceEEccccCcccCCcCCcCCC---------ceEEEccC
Confidence 799998877777776655555554 322 234444 333 11222222111 11455669
Q ss_pred ceeeecccceeEEEEEEc
Q psy16151 262 GRTFIKGKGLITTYFIRQ 279 (299)
Q Consensus 262 g~~~~k~~~~~~t~~~~~ 279 (299)
|||.|+|.-.|.=||=+-
T Consensus 421 GEilVRG~~Vm~GYyk~p 438 (613)
T COG1022 421 GEILVRGPNVMKGYYKNP 438 (613)
T ss_pred ceEEEecchhcchhcCCh
Confidence 999999999999999654
No 259
>PRK05370 argininosuccinate synthase; Validated
Probab=33.63 E-value=60 Score=31.37 Aligned_cols=73 Identities=12% Similarity=-0.113 Sum_probs=38.4
Q ss_pred EcCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC----HHhHHHHhhcccccCCCCccceee
Q psy16151 88 KLSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS----HFTHLAWVNTPRKEGGLGKLKIPL 162 (299)
Q Consensus 88 ~Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~----~~~~~~~~~~~~~~~~~~~~~~p~ 162 (299)
.|+++ +|+.|+|-|--+-.+.+|...+ ++.|.+|+++.+|- .++..+..++..+. +..=..
T Consensus 4 ~~~~l~~~~KVvLAYSGGLDTSv~l~wL----------~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~----GA~~~~ 69 (447)
T PRK05370 4 ILKHLPVGQRVGIAFSGGLDTSAALLWM----------RQKGAVPYAYTANLGQPDEDDYDAIPRRAMEY----GAENAR 69 (447)
T ss_pred hhhhCCCCCEEEEEecCCchHHHHHHHH----------HhcCCeEEEEEEECCCCCccchHHHHHHHHHh----CCCEEE
Confidence 46787 8888888775455555554332 22377888887653 23333333332222 333234
Q ss_pred eecCchHHHHHh
Q psy16151 163 LSDLTHKISLDY 174 (299)
Q Consensus 163 l~D~~~~~~~~~ 174 (299)
+.|...++++.|
T Consensus 70 viDlr~eF~e~~ 81 (447)
T PRK05370 70 LIDCRAQLVAEG 81 (447)
T ss_pred EeccHHHHHHHH
Confidence 455555555444
No 260
>KOG0913|consensus
Probab=33.28 E-value=11 Score=33.02 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=27.3
Q ss_pred cCcc-CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEE
Q psy16151 89 LSDY-YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV 131 (299)
Q Consensus 89 Lsd~-~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~v 131 (299)
+.++ .|-+.+ .|+ +.|||.|..-.+++.+...--.+-++.|
T Consensus 34 w~~~l~gewmi-~~~-ap~~psc~~~~~~~~~~a~~s~dL~v~v 75 (248)
T KOG0913|consen 34 WKELLTGEWMI-EFG-APWCPSCSDLIPHLENFATVSLDLGVKV 75 (248)
T ss_pred hhhhhchHHHH-Hhc-CCCCccccchHHHHhccCCccCCCceeE
Confidence 4444 455544 455 9999999999998887765544445443
No 261
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=33.05 E-value=1.2e+02 Score=27.26 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=53.3
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHH
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ 173 (299)
+-+|||.|| -..++.|...-..|..++.+|.. +.++-|...... +...
T Consensus 146 ~~~VVVHiY-~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~~~-----------------------------~~~~ 193 (265)
T PF02114_consen 146 STWVVVHIY-EPGFPRCEIMNSCLECLARKYPE--VKFVKIRASKCP-----------------------------ASEN 193 (265)
T ss_dssp T-EEEEEEE--TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECGCC-----------------------------TTTT
T ss_pred CcEEEEEEE-eCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhccC-----------------------------cccC
Confidence 347777777 66799999999999999999974 777766443110 0011
Q ss_pred hCCcccCCCCceeEEEEEeCCCcEEEEEeccC---CCCCCHHHHHHHHhhcc
Q psy16151 174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDL---PVGRSVDETLRLVQAFH 222 (299)
Q Consensus 174 ~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~---~~g~~~~evl~~l~~L~ 222 (299)
|... ..|+.++. ++|.++..+.+-. +..-...++-..|....
T Consensus 194 f~~~------~LPtllvY-k~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 194 FPDK------NLPTLLVY-KNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp S-TT------C-SEEEEE-ETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred Cccc------CCCEEEEE-ECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 2221 35788888 6999998886432 12234455555555543
No 262
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=32.15 E-value=1.3e+02 Score=23.25 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=45.3
Q ss_pred eeEEEEEeCCCcEEEEEecc-----CCCCCCHHHHHHHHhhccCCCCCCccccccceeccceechHHHHHHHhhcCceEE
Q psy16151 185 LRGLFIIDRNGVLRQITMND-----LPVGRSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQVTEKTCDILEDHGVTCE 259 (299)
Q Consensus 185 ~p~~~lID~dG~I~~~~~~~-----~~~g~~~~evl~~l~~L~~~~~g~~vn~ast~~~~~i~~s~~~~~~L~~~~~~~~ 259 (299)
....+++-|+|.+-+.+... .......+++...+.. ..++=.-+||..++..++.+..+.|.+.|+.++
T Consensus 17 y~~~viv~p~~~~~w~~~~~s~~~~~~~~l~~~~l~~ll~~------~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve 90 (117)
T cd05126 17 YEHDIVVYPDGSRARRWKELSKKTGTSHGLQPEELEELLEE------GVEVIVIGTGQSGALKVPPETVEKLEKRGVEVL 90 (117)
T ss_pred EcCCEEEeCCccccccccccccccCCcccCCHHHHHHHHhc------CCCEEEEcCCCCccccCCHHHHHHHHhcCCEEE
Confidence 44567777887664543211 1223345555555431 233444499999999999999999999998777
Q ss_pred e
Q psy16151 260 L 260 (299)
Q Consensus 260 ~ 260 (299)
.
T Consensus 91 ~ 91 (117)
T cd05126 91 V 91 (117)
T ss_pred E
Confidence 6
No 263
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=32.12 E-value=99 Score=24.98 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=27.7
Q ss_pred ccCCCeEEEEEEeCCCCCCchhh-HHHHHHHHHHHhhcCcE-EEEEeCCC
Q psy16151 91 DYYGKYLVFFFYPLDFTFVCPTE-ILAFNDRLEEFHQINTE-VVAASVDS 138 (299)
Q Consensus 91 d~~Gk~vlL~F~~~~~cp~C~~~-~~~l~~l~~~~~~~gv~-vi~Vs~d~ 138 (299)
.|+|+.+++=-+ ...-..-..+ ...|+++.+++++.|++ |+.|+.|.
T Consensus 47 qfKGRv~l~P~~-~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D~ 95 (142)
T PF10673_consen 47 QFKGRVLLFPAF-TYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSDS 95 (142)
T ss_pred hcCceEEecCCe-eeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecCc
Confidence 578985443222 1111111222 34688888899998987 77777774
No 264
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=31.59 E-value=38 Score=28.44 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=19.0
Q ss_pred hHHHHHHHhhcCceEEecc-eeeeccc
Q psy16151 244 TEKTCDILEDHGVTCELRG-RTFIKGK 269 (299)
Q Consensus 244 s~~~~~~L~~~~~~~~~rg-~~~~k~~ 269 (299)
..-+.+.|.++|+...++| .+++.|+
T Consensus 88 v~i~kE~L~~~gv~~~R~GDDLy~~~~ 114 (183)
T PF04017_consen 88 VAIIKEVLEEYGVKLRREGDDLYVNGR 114 (183)
T ss_dssp HHHHHHHHHTTT--EEEETTEEEETTE
T ss_pred HHHHHHHHHhcCCceeecccceeECCC
Confidence 4567788888999999999 7887764
No 265
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=30.12 E-value=1.5e+02 Score=21.86 Aligned_cols=56 Identities=18% Similarity=0.107 Sum_probs=34.3
Q ss_pred cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEE
Q psy16151 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQI 200 (299)
Q Consensus 127 ~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~ 200 (299)
.|..=+++.+++.++..++.+++++. +. ++..++.. ...| ....++.||||..+..
T Consensus 69 ~g~~hi~f~v~~~~~v~~~~~~l~~~----g~--~~~~~~~~---~~~g---------~~~~~~~DPdG~~iE~ 124 (125)
T cd07241 69 TGWAHLAFSVGSKEAVDELTERLRAD----GY--LIIGEPRT---TGDG---------YYESVILDPEGNRIEI 124 (125)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHC----CC--EEEeCcee---cCCC---------eEEEEEECCCCCEEEe
Confidence 36667888998877788888877544 32 33333210 0111 2356789999998753
No 266
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=30.10 E-value=2.4e+02 Score=21.36 Aligned_cols=60 Identities=17% Similarity=0.026 Sum_probs=37.5
Q ss_pred cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 127 ~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
.++.-+++.+++.++..++.+.+++. .++++.++.. ..++. ....++.||+|..+.+...
T Consensus 58 ~~~~hl~~~v~d~~~~~~~~~~l~~~------G~~i~~~~~~---~~~~~--------~~~~~~~DPdG~~iei~~~ 117 (131)
T cd08343 58 PGLHHVAFEVESLDDILRAADRLAAN------GIQIEFGPGR---HGPGN--------NLFLYFRDPDGNRVELSAE 117 (131)
T ss_pred CCeeEEEEEcCCHHHHHHHHHHHHHc------CCeeEECCCc---cCCCC--------cEEEEEECCCCCEEEEEcC
Confidence 46667888888877766677666433 3345544321 01111 2357899999999988743
No 267
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=29.96 E-value=62 Score=24.91 Aligned_cols=53 Identities=8% Similarity=0.059 Sum_probs=32.7
Q ss_pred eEEcCccCCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHh
Q psy16151 86 EIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWV 146 (299)
Q Consensus 86 ~v~Lsd~~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~ 146 (299)
.+.+++..|..++|.--+.. |+.|+--|..+.+ +-|+.|+-.-.++.. .+.|.
T Consensus 58 ~l~~~~~~Gd~m~I~G~ypP-C~~CkG~Mr~~s~------~~g~~I~Y~w~~~~~-~~~w~ 110 (118)
T PF14427_consen 58 DLPLNQVPGDRMLIDGQYPP-CNSCKGKMRRASE------KSGATIQYTWPNGGG-KEEWK 110 (118)
T ss_pred hcCccccCCceEEEeeecCC-CchhHHHHHHhhh------ccCcEEEEecCCCCC-ceeee
Confidence 45666777998888877666 8889877755443 235666554433322 44554
No 268
>KOG1752|consensus
Probab=29.92 E-value=1.1e+02 Score=23.21 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=11.7
Q ss_pred CCeEEEEEEeCCCCCCchh
Q psy16151 94 GKYLVFFFYPLDFTFVCPT 112 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~ 112 (299)
.++||++- -+|||.|..
T Consensus 13 ~~~VVifS--Ks~C~~c~~ 29 (104)
T KOG1752|consen 13 ENPVVIFS--KSSCPYCHR 29 (104)
T ss_pred cCCEEEEE--CCcCchHHH
Confidence 34555543 688999987
No 269
>KOG3414|consensus
Probab=29.40 E-value=2e+02 Score=22.91 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=30.5
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 137 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d 137 (299)
..|.|||-|. -.|-|.|...=.-|.+..+...+ =++|..+-+|
T Consensus 22 ~~rlvViRFG-r~~Dp~C~~mD~~L~~i~~~vsn-fa~Iylvdid 64 (142)
T KOG3414|consen 22 EERLVVIRFG-RDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDID 64 (142)
T ss_pred cceEEEEEec-CCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecc
Confidence 3478888888 78899999888788888777763 2334444444
No 270
>COG2957 Peptidylarginine deiminase and related enzymes [Amino acid transport and metabolism]
Probab=29.11 E-value=4.7e+02 Score=24.22 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=14.4
Q ss_pred cceeeecccceeEEEEEE
Q psy16151 261 RGRTFIKGKGLITTYFIR 278 (299)
Q Consensus 261 rg~~~~k~~~~~~t~~~~ 278 (299)
-|.|++-|.|.+.|=+-.
T Consensus 155 GGsi~~dG~Gt~LTT~~C 172 (346)
T COG2957 155 GGSIHSDGEGTLLTTEQC 172 (346)
T ss_pred cCceeecCceeEEeehHh
Confidence 468999999999986643
No 271
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=28.97 E-value=79 Score=22.82 Aligned_cols=15 Identities=27% Similarity=0.572 Sum_probs=10.7
Q ss_pred eEEEEEeCCCcEEEE
Q psy16151 186 RGLFIIDRNGVLRQI 200 (299)
Q Consensus 186 p~~~lID~dG~I~~~ 200 (299)
+..++.||+|.++..
T Consensus 93 ~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 93 RSFYFIDPDGNRIEF 107 (108)
T ss_dssp EEEEEE-TTS-EEEE
T ss_pred EEEEEECCCCCEEEe
Confidence 588999999988754
No 272
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=27.87 E-value=2.2e+02 Score=21.13 Aligned_cols=56 Identities=13% Similarity=-0.013 Sum_probs=36.4
Q ss_pred CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151 128 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 128 gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~ 202 (299)
++.-+++.+++.+++.+|.+.+++. +++.... +... +. ..+.++.||+|..+....
T Consensus 62 ~~~h~af~v~~~~~v~~~~~~l~~~----G~~~~~~-~~~~------~~--------~~~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 62 GLGHIAWRASSPEALERRVAALEAS----GLGIGWI-EGDP------GH--------GKAYRFRSPDGHPMELYW 117 (121)
T ss_pred ceEEEEEEcCCHHHHHHHHHHHHHc----CCccccc-cCCC------CC--------cceEEEECCCCCEEEEEE
Confidence 5667888899988888888887554 4433111 1000 11 136799999999887764
No 273
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=27.64 E-value=75 Score=26.15 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=24.9
Q ss_pred EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEE
Q psy16151 99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV 131 (299)
Q Consensus 99 L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~v 131 (299)
|.||.-..||.|-.-.+.|.++.+++. .+++|
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~-~~~~v 34 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG-GGIEV 34 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC-CCceE
Confidence 456668889999999999999999883 34443
No 274
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=27.08 E-value=4.1e+02 Score=22.93 Aligned_cols=92 Identities=9% Similarity=0.108 Sum_probs=52.0
Q ss_pred CceEEcCccCC-CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceee
Q psy16151 84 LKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL 162 (299)
Q Consensus 84 G~~v~Lsd~~G-k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (299)
|..++.-|+-. ...|+ |+-+. =..++..+.+.+... ..+.+|.+.-+..+..++| .-++
T Consensus 108 G~~vNPLd~v~~~~~Lv-fiDgd----D~~Qv~wak~~~~~~--~~~k~ILv~Gs~~~~~~~l-------------~~~v 167 (209)
T PRK13738 108 GEVVNPLQYVPFNQTLY-FINGD----DPAQVAWMKRQTPPT--LESKIILVQGSIPEMSKAL-------------DSRI 167 (209)
T ss_pred CCeECcccccCCCceEE-EEeCC----CHHHHHHHHHhhhcc--CCceEEEECCCHHHHHHHh-------------CCce
Confidence 44444444422 12344 44344 345665555433222 2577887776554443333 3366
Q ss_pred eecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 163 LSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 163 l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
..|..+.+.+.||+. ..|+.+---.+|+...+.
T Consensus 168 YfdQ~G~Lt~rF~I~------~VPAvV~~~q~G~~l~I~ 200 (209)
T PRK13738 168 YFDQNGVLCQRFGID------QVPARVSAVPGGRFLKVE 200 (209)
T ss_pred EEcCcchHHHhcCCe------eeceEEEEcCCCCEEEEE
Confidence 789889999999996 456543322788887665
No 275
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=27.01 E-value=1.9e+02 Score=22.58 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcc
Q psy16151 114 ILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTP 149 (299)
Q Consensus 114 ~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~ 149 (299)
.|.+.++..+++++|+.++.+|..+.......++.+
T Consensus 79 ~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~ 114 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL 114 (176)
T ss_dssp STTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT
T ss_pred hhhhhhhhhhcccccceeEEeecCCccccccccccc
Confidence 345566667777789999999988776666666554
No 276
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=26.95 E-value=1.6e+02 Score=19.88 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=23.2
Q ss_pred eEEEEEeCCCcEEEEEeccCC-CCCCHHHHHHHHhhcc
Q psy16151 186 RGLFIIDRNGVLRQITMNDLP-VGRSVDETLRLVQAFH 222 (299)
Q Consensus 186 p~~~lID~dG~I~~~~~~~~~-~g~~~~evl~~l~~L~ 222 (299)
.-.|.||++|+|......... ...--+..++.++...
T Consensus 13 ~v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~~~ 50 (74)
T TIGR01352 13 VVRFTVDADGRVTSVSVLKSSGDEALDRAALEAVRKAR 50 (74)
T ss_pred EEEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHhCC
Confidence 457999999999877653222 2223345666666654
No 277
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=26.79 E-value=1.1e+02 Score=29.55 Aligned_cols=52 Identities=6% Similarity=-0.075 Sum_probs=41.2
Q ss_pred CCceEEcCccCCCe-EEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCC
Q psy16151 83 QLKEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVD 137 (299)
Q Consensus 83 ~G~~v~Lsd~~Gk~-vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d 137 (299)
+++.++|.+++|.. |||.- ++ -..|...+.......+++.++||-|+-|..+
T Consensus 285 ~~~~v~l~~LRg~~RvvIvA--G~-~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 285 TNRIVELVQLRDITRPVILA--GT-KESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred CCCEEeHHHhcCcceEEEEE--CC-HHHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 56799999999973 44433 43 3577788888899999999999999999775
No 278
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=26.04 E-value=1.9e+02 Score=24.84 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=51.6
Q ss_pred EEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCc
Q psy16151 98 VFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVY 177 (299)
Q Consensus 98 lL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~ 177 (299)
||..|-+-.|..|+.--..|.++.++ .+|-.++..+|==+ ..-|.+.+ .-|-.++....-++.+|..
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDYWD-ylGWkD~f---------a~~~~t~RQr~Y~~~~~~~ 67 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDYWD-YLGWKDPF---------ASPEFTQRQRAYARRFGLR 67 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-STT--SSSS--TT-----------HHHHHHHHHHHHHTT-S
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCccc-CCCCCCcc---------CChhHHHHHHHHHHHhCCC
Confidence 45666688899999998888888877 37777777776200 01122211 1122222234455555542
Q ss_pred ccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhccCCCCCCcccc
Q psy16151 178 LSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAING 232 (299)
Q Consensus 178 ~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L~~~~~g~~vn~ 232 (299)
+...|.+ || ||+.-.. +.+..++.+.+........+..+..
T Consensus 68 ----~vYTPQ~-vV--nG~~~~~-------g~~~~~~~~ai~~~~~~~~~~~~~~ 108 (202)
T PF06764_consen 68 ----SVYTPQV-VV--NGREHRV-------GSDRAAVEAAIQAARARPAPAALTL 108 (202)
T ss_dssp -------SSEE-EE--TTTEEEE-------TT-HHHHHHHHHHHHHTT-S--S-E
T ss_pred ----CCcCCeE-EE--CCeeeee-------ccCHHHHHHHHHHhhccCCCCceEE
Confidence 2234544 55 5765533 3456677777766554433333433
No 279
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=25.89 E-value=1.5e+02 Score=22.15 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=34.9
Q ss_pred CeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 95 KYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 95 k~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
+.+||+| ...+..-..-+..|.++.++++.+|+.++.++..+
T Consensus 49 ~~vIlD~--s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 49 KNVILDM--SGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp SEEEEEE--TTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred eEEEEEE--EeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5788887 55566677888899999999999999999987754
No 280
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=25.78 E-value=3.2e+02 Score=21.38 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=26.3
Q ss_pred HHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHhhc
Q psy16151 169 KISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221 (299)
Q Consensus 169 ~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~~L 221 (299)
.+.+.||+... ..|+.++++.++. +|.... ..-..+.+.+.+...
T Consensus 70 ~~~~~fgl~~~----~~P~v~i~~~~~~-KY~~~~---~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 70 DLEEALNIGGF----GYPAMVAINFRKM-KFATLK---GSFSEDGINEFLREL 114 (130)
T ss_pred HHHHHcCCCcc----CCCEEEEEecccC-cccccc---CccCHHHHHHHHHHH
Confidence 47777887522 3688999998876 665321 122345555555444
No 281
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.77 E-value=2.1e+02 Score=21.14 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=36.5
Q ss_pred CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151 128 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 128 gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~ 202 (299)
++.-+++.+++.+++.++.+.+.+. + +++...+... ..++ ..+..++.||+|..+..+.
T Consensus 58 ~~~h~~f~v~~~~dl~~~~~~l~~~----G--~~~~~~~~~~--~~~~--------~~~~~~~~DP~G~~ie~~~ 116 (120)
T cd07254 58 GLNHLGVQVDSAEEVAEAKARAEAA----G--LPTFKEEDTT--CCYA--------VQDKVWVTDPDGNAWEVFV 116 (120)
T ss_pred CeeEEEEEeCCHHHHHHHHHHHHHc----C--CeEEccCCcc--cccC--------CcceEEEECCCCCEEEEEE
Confidence 5666888888877777777776543 3 3333332211 0111 1246889999999987763
No 282
>COG3695 Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=25.56 E-value=54 Score=24.85 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHhhccCCCCCCccccccc-eeccceechHHHHHHHhhcCceEEecceeeec
Q psy16151 208 GRSVDETLRLVQAFHDPLRTGAINGLSL-LVIGLFQVTEKTCDILEDHGVTCELRGRTFIK 267 (299)
Q Consensus 208 g~~~~evl~~l~~L~~~~~g~~vn~ast-~~~~~i~~s~~~~~~L~~~~~~~~~rg~~~~k 267 (299)
.+.++.++.-+..=+...|++-||...+ +.+|- .-++..++|..-|+.+..+|.|.++
T Consensus 39 ARqVG~il~~l~~~s~lPWhRVvns~G~isl~~~--~~~~Q~~lL~aEGv~~~~~g~i~L~ 97 (103)
T COG3695 39 ARQVGRILKHLPEGSDLPWHRVVNSDGRISLPGP--DKQRQRELLLAEGVEFSDTGRIDLE 97 (103)
T ss_pred HHHHHHHHhhCCCCCCCChhheecCCCcccCCCc--cHHHHHHHHHHcCceeccCceeeHH
Confidence 3445555555444455566777776522 11211 3366777888889999998888765
No 283
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=25.39 E-value=2.8e+02 Score=20.42 Aligned_cols=56 Identities=14% Similarity=0.031 Sum_probs=35.5
Q ss_pred cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 127 ~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~ 202 (299)
.+..-+++.+++.++..++.+++.+. ++.+ . .+. ..+ ...+.|+.||+|..+.+..
T Consensus 63 ~~~~hi~f~v~~~~~v~~~~~~l~~~----g~~~--~-~~~-----~~~--------~~~~~~~~DPdG~~iEi~~ 118 (125)
T cd07255 63 TGLYHFAILLPSRADLAAALRRLIEL----GIPL--V-GAS-----DHL--------VSEALYLSDPEGNGIEIYA 118 (125)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHc----CCce--e-ccc-----ccc--------ceeEEEEECCCCCEEEEEE
Confidence 35667888888877788888777544 3322 1 110 001 1246789999999987763
No 284
>KOG4614|consensus
Probab=25.04 E-value=83 Score=27.76 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=21.8
Q ss_pred eEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHHh
Q psy16151 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQ 219 (299)
Q Consensus 186 p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l~ 219 (299)
-.+||||+.|+||+...+.. +....+.+....+
T Consensus 249 GyV~L~D~s~kIRW~g~G~a-Tp~Eve~L~~~~k 281 (287)
T KOG4614|consen 249 GYVLLLDKSGKIRWQGFGTA-TPEEVEQLLSCTK 281 (287)
T ss_pred EEEEEEccCceEEEeecCCC-CHHHHHHHHHHHH
Confidence 45899999999999984433 3334455554444
No 285
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=24.84 E-value=1.2e+02 Score=20.45 Aligned_cols=17 Identities=12% Similarity=0.022 Sum_probs=11.5
Q ss_pred EeCCCCCCchhhHHHHH
Q psy16151 102 YPLDFTFVCPTEILAFN 118 (299)
Q Consensus 102 ~~~~~cp~C~~~~~~l~ 118 (299)
|...|||.|....-.|.
T Consensus 4 y~~~~~p~~~rv~~~L~ 20 (71)
T cd03060 4 YSFRRCPYAMRARMALL 20 (71)
T ss_pred EecCCCcHHHHHHHHHH
Confidence 34678999977654444
No 286
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=24.80 E-value=2.1e+02 Score=21.09 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=33.9
Q ss_pred eEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 96 YLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 96 ~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
+|.|.|.|-+-|..-..-...|.-++..+++.|.+|+..-+++
T Consensus 6 ~V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~d 48 (88)
T PF15092_consen 6 YVTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIED 48 (88)
T ss_pred EEEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEecc
Confidence 5777777777777655667789999999999999998887654
No 287
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=24.66 E-value=1.8e+02 Score=23.16 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 93 YGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 93 ~Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
..|.|||-|. -.|-|.|...=.-|.+..++.+. =+.|+.|..+.
T Consensus 19 ~drvvViRFG-~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~ 62 (133)
T PF02966_consen 19 EDRVVVIRFG-RDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDE 62 (133)
T ss_dssp SSSEEEEEEE--TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTT
T ss_pred CceEEEEEeC-CCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEccc
Confidence 4578999998 67899999888888888887763 34455666553
No 288
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=24.38 E-value=92 Score=25.54 Aligned_cols=41 Identities=10% Similarity=0.030 Sum_probs=29.5
Q ss_pred EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCH
Q psy16151 99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSH 139 (299)
Q Consensus 99 L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~ 139 (299)
|.||...-||.|-...+.|.++.+++.+-.++...++....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~~ 42 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRPD 42 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSSTH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccccc
Confidence 34454778999999999999999998444455555655443
No 289
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=23.62 E-value=1.5e+02 Score=20.24 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=22.7
Q ss_pred eEEEEEeCCCcEEEEEecc-CCCCCCHHHHHHHHhh
Q psy16151 186 RGLFIIDRNGVLRQITMND-LPVGRSVDETLRLVQA 220 (299)
Q Consensus 186 p~~~lID~dG~I~~~~~~~-~~~g~~~~evl~~l~~ 220 (299)
--.|.||+||+|....... .+...--++.++.++.
T Consensus 19 ~v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~ 54 (79)
T PF03544_consen 19 VVEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKK 54 (79)
T ss_dssp EEEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC
T ss_pred EEEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHh
Confidence 4579999999998776532 2233344566666655
No 290
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=23.61 E-value=1.5e+02 Score=23.02 Aligned_cols=64 Identities=8% Similarity=-0.025 Sum_probs=40.9
Q ss_pred EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEE--EEEeCC--CHHhHHHHhhcccccCCCCccceeeeecCchHHHHHh
Q psy16151 99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEV--VAASVD--SHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDY 174 (299)
Q Consensus 99 L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~v--i~Vs~d--~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~ 174 (299)
|.+|...-|..|+.....|. +.|++. +-+..+ +.+.+.+|++.. +.+|.-+....+...+.+
T Consensus 3 itiy~~p~C~t~rka~~~L~-------~~gi~~~~~~y~~~~~s~~eL~~~l~~~-------g~~~~~li~t~~~~~r~L 68 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLE-------EHGIEYTFIDYLKTPPSREELKKILSKL-------GDGVEELINTRGTTYREL 68 (117)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEEEeecCCCCHHHHHHHHHHc-------CccHHHHHHhccchHHHc
Confidence 34444666777877665444 456664 333333 467788999876 555666666667788888
Q ss_pred CC
Q psy16151 175 GV 176 (299)
Q Consensus 175 gv 176 (299)
+.
T Consensus 69 ~~ 70 (117)
T COG1393 69 NL 70 (117)
T ss_pred CC
Confidence 84
No 291
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=23.53 E-value=2e+02 Score=23.23 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=24.9
Q ss_pred EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCCHH
Q psy16151 99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHF 140 (299)
Q Consensus 99 L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~ 140 (299)
+.+|....|.-|...+..|. ..|++|=.+..|+-.
T Consensus 28 ~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~d~~ 62 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETDDFL 62 (149)
T ss_pred EEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecCcHH
Confidence 45566888998987665444 568888877777654
No 292
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=23.04 E-value=4.4e+02 Score=24.86 Aligned_cols=63 Identities=10% Similarity=-0.052 Sum_probs=37.3
Q ss_pred EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEe-----CCCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151 99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS-----VDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 169 (299)
Q Consensus 99 L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs-----~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 169 (299)
|.+..+..||+|.+-...+.+..+--...|+.+.... ..+..++.+-..+ +....++..+...
T Consensus 54 ielisGPGCPVCVtp~~~ID~ai~La~~~~vi~~TfGDmlRVPGs~~SL~~ara~--------GadVriVYSpldA 121 (364)
T PRK15062 54 IELIHGPGCPVCVTPMGRIDAAIELASRPGVILCTFGDMLRVPGSKGSLLEAKAE--------GADVRIVYSPLDA 121 (364)
T ss_pred cEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEeccccccCCCCcCCHHHHHhC--------CCCEEEEeCHHHH
Confidence 5556689999999988888877655444455444331 1122233332222 6667777776543
No 293
>PF14376 Haem_bd: Haem-binding domain
Probab=23.04 E-value=46 Score=26.61 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.0
Q ss_pred eechHHHHHHHhhcCceEEecce
Q psy16151 241 FQVTEKTCDILEDHGVTCELRGR 263 (299)
Q Consensus 241 i~~s~~~~~~L~~~~~~~~~rg~ 263 (299)
++.++++..+|+..||+||-...
T Consensus 30 ~~~p~~v~~il~~~CydCHSn~T 52 (137)
T PF14376_consen 30 IKAPEEVKIILKNSCYDCHSNNT 52 (137)
T ss_pred ccchHHHHHHHHccccccCCCCC
Confidence 46789999999999999998764
No 294
>KOG2961|consensus
Probab=22.75 E-value=3e+02 Score=22.79 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=41.0
Q ss_pred eEEcCccCC-CeEEEEEEeCCCCC-------CchhhHHHHHHHHHHHhhcCcEEEEEeC-----CCHHhHHHHhhccccc
Q psy16151 86 EIKLSDYYG-KYLVFFFYPLDFTF-------VCPTEILAFNDRLEEFHQINTEVVAASV-----DSHFTHLAWVNTPRKE 152 (299)
Q Consensus 86 ~v~Lsd~~G-k~vlL~F~~~~~cp-------~C~~~~~~l~~l~~~~~~~gv~vi~Vs~-----d~~~~~~~~~~~~~~~ 152 (299)
+....+++| |-||++ -..|- .-+.++|.+.+....|.++++.++.=|. |...+.++.+++
T Consensus 34 p~~I~~~~~ikavVlD---KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~---- 106 (190)
T KOG2961|consen 34 PWEILKRKGIKAVVLD---KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEA---- 106 (190)
T ss_pred CcchhhccCceEEEEc---CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHH----
Confidence 455556666 556665 33342 2345677788888888777777766554 334444444443
Q ss_pred CCCCccceeeeecC
Q psy16151 153 GGLGKLKIPLLSDL 166 (299)
Q Consensus 153 ~~~~~~~~p~l~D~ 166 (299)
.+..|++--.
T Consensus 107 ----k~gIpVlRHs 116 (190)
T KOG2961|consen 107 ----KIGIPVLRHS 116 (190)
T ss_pred ----hhCCceEeec
Confidence 5667777543
No 295
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.55 E-value=1.8e+02 Score=21.57 Aligned_cols=15 Identities=47% Similarity=0.795 Sum_probs=13.0
Q ss_pred eEEEEEeCCCcEEEE
Q psy16151 186 RGLFIIDRNGVLRQI 200 (299)
Q Consensus 186 p~~~lID~dG~I~~~ 200 (299)
+..++.||||..+.+
T Consensus 97 r~f~~~DPdGn~~~~ 111 (113)
T cd08356 97 REFFLHDPSGVLWHI 111 (113)
T ss_pred EEEEEECCCccEEEe
Confidence 689999999998765
No 296
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=22.49 E-value=1.1e+02 Score=26.92 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=31.5
Q ss_pred HHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccc-eeeeecC
Q psy16151 119 DRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLK-IPLLSDL 166 (299)
Q Consensus 119 ~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~-~p~l~D~ 166 (299)
.++.++++.|+.||.+|+-+.+++..+.+.+ ++. .|+++..
T Consensus 30 pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l-------~v~~~p~iaEn 71 (274)
T COG3769 30 PVLLELKDAGVPVILCSSKTRAEMLYLQKSL-------GVQGLPLIAEN 71 (274)
T ss_pred hHHHHHHHcCCeEEEeccchHHHHHHHHHhc-------CCCCCceeecC
Confidence 3456677889999999999988888888776 554 6777654
No 297
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=22.22 E-value=3.2e+02 Score=20.83 Aligned_cols=67 Identities=9% Similarity=0.108 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcCcEEE--EEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeC
Q psy16151 116 AFNDRLEEFHQINTEVV--AASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDR 193 (299)
Q Consensus 116 ~l~~l~~~~~~~gv~vi--~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~ 193 (299)
.|+++.++..+.|+.++ |+.-++-....+++.+..+.. ...-.+.-| ..+.++|+|. ..|+.++...
T Consensus 12 ~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~---~~~~~v~Id--P~~F~~y~I~------~VPa~V~~~~ 80 (113)
T PF09673_consen 12 SLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKD---DPCPGVQID--PRLFRQYNIT------AVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhcc---CCCcceeEC--hhHHhhCCce------EcCEEEEEcC
Confidence 45666666666665544 444455444445554442221 111244445 4789999996 5677777644
No 298
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.22 E-value=2.3e+02 Score=29.97 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.1
Q ss_pred eeEEEEEeCCCcEEEE
Q psy16151 185 LRGLFIIDRNGVLRQI 200 (299)
Q Consensus 185 ~p~~~lID~dG~I~~~ 200 (299)
.|..-++|.||+|..-
T Consensus 288 Lp~i~i~d~dG~in~~ 303 (877)
T COG0525 288 LPLINIIDEDGRINEE 303 (877)
T ss_pred CCceEEECCCCeeccC
Confidence 4778899999999844
No 299
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=21.87 E-value=4.8e+02 Score=24.64 Aligned_cols=63 Identities=11% Similarity=-0.035 Sum_probs=36.9
Q ss_pred EEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEe----C-CCHHhHHHHhhcccccCCCCccceeeeecCchH
Q psy16151 99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAAS----V-DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK 169 (299)
Q Consensus 99 L~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs----~-d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 169 (299)
|.+..+..||+|.+-...+.+..+--...|+.+.... + .+..++.+-..+ +....+++.+...
T Consensus 60 IelisGPGCPVCVtp~~~ID~ai~LA~~~~vii~TfGDmlRVPGs~~SL~~ara~--------GadVriVYSpldA 127 (369)
T TIGR00075 60 LELVHGPGCPVCVTPMERIDEAIELATIPEIIFCTFGDMMRVPGSGGSLLQARAE--------GADVRIVYSPMDA 127 (369)
T ss_pred cEEecCCCCCcEeCcHHHHHHHHHHhCCCCeEEEecchhccCCCCCCCHHHHHhC--------CCCEEEEeCHHHH
Confidence 5666799999999888888877654434455444331 1 122233332222 6667777776543
No 300
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=21.84 E-value=1.8e+02 Score=21.81 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=14.9
Q ss_pred eeEEEEEeCCCcEEEEEe
Q psy16151 185 LRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 185 ~p~~~lID~dG~I~~~~~ 202 (299)
.+..++.||||.++....
T Consensus 103 ~~~~~f~DPdG~~iEl~~ 120 (123)
T cd08351 103 GRGVYFLDPDGHLLEIIT 120 (123)
T ss_pred eeEEEEECCCCCEEEEEe
Confidence 368999999999987753
No 301
>PRK04247 hypothetical protein; Provisional
Probab=21.66 E-value=3.2e+02 Score=24.14 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=45.9
Q ss_pred EEEEeCCCcEEEEEeccCC-CCCCHHHHHHHHhhccCCCCCCccccccceeccceechHHHHHHHhhcCceEEe
Q psy16151 188 LFIIDRNGVLRQITMNDLP-VGRSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQVTEKTCDILEDHGVTCEL 260 (299)
Q Consensus 188 ~~lID~dG~I~~~~~~~~~-~g~~~~evl~~l~~L~~~~~g~~vn~ast~~~~~i~~s~~~~~~L~~~~~~~~~ 260 (299)
.+-.|++|+++.+..-.-. ...-+.++.+-+..+..+ .+.+ -.|+.-...+++.+..+|++.|++|-.
T Consensus 164 ila~D~~G~lViVEvKrr~~~~~~V~Ql~rY~~~~~~~-~~~~----VRGilvAp~i~~~A~~ll~~~Gle~~~ 232 (238)
T PRK04247 164 ILGRDKDGNLVVLELKRRRAGLSAVSQLKRYVEALREL-HGDK----VRGILVAPSITDRARRLLEKEGLEFVK 232 (238)
T ss_pred EEEECCCCCEEEEEEEEccCChhHHHHHHHHHHHHHhh-cCCC----cEEEEECCcCCHHHHHHHHHcCCeEEE
Confidence 6778999998877653322 233467777777777432 2322 356666667899999999999987753
No 302
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=21.60 E-value=3.9e+02 Score=21.18 Aligned_cols=67 Identities=6% Similarity=0.087 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhcCcEE--EEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeC
Q psy16151 116 AFNDRLEEFHQINTEV--VAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDR 193 (299)
Q Consensus 116 ~l~~l~~~~~~~gv~v--i~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~ 193 (299)
.|+++..+....|+.+ -|+--++-....+.+.+.... +-...+.-| ..+.++|+|. ..|+.+++..
T Consensus 13 ~Lk~l~~~a~~~g~~~VlRG~~~~~~~~T~~~i~~L~~~----~~~~~v~Id--P~lF~~f~I~------~VPa~V~~~~ 80 (130)
T TIGR02742 13 LLKQLLDQAEALGAPLVIRGLLDNGFKATATRIQSLIKD----GGKSGVQID--PQWFKQFDIT------AVPAFVVVKD 80 (130)
T ss_pred HHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHhc----CCCCcEEEC--hHHHhhcCce------EcCEEEEECC
Confidence 4666666666556543 344444433333333333222 111334444 4789999996 5677777754
Q ss_pred C
Q psy16151 194 N 194 (299)
Q Consensus 194 d 194 (299)
+
T Consensus 81 ~ 81 (130)
T TIGR02742 81 G 81 (130)
T ss_pred C
Confidence 4
No 303
>PRK06724 hypothetical protein; Provisional
Probab=21.60 E-value=2.2e+02 Score=22.03 Aligned_cols=61 Identities=8% Similarity=0.061 Sum_probs=36.5
Q ss_pred cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEe
Q psy16151 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITM 202 (299)
Q Consensus 127 ~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~ 202 (299)
.|..=+++.+.+.++..++.+.+++. +. +++..+... ..++- ...+.++-||||..+....
T Consensus 62 ~g~~h~af~v~~~~dvd~~~~~l~~~----G~--~~~~~p~~~--~~~~~-------g~~~~~f~DPdG~~iEl~~ 122 (128)
T PRK06724 62 LGPRHICYQAINRKVVDEVAEFLSST----KI--KIIRGPMEM--NHYSE-------GYYTIDFYDPNGFIIEVAY 122 (128)
T ss_pred CCceeEEEecCChHHHHHHHHHHHHC----CC--EEecCCccc--CCCCC-------CEEEEEEECCCCCEEEEEe
Confidence 35667778887777788888777544 33 333333110 01111 2357789999999887653
No 304
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=21.31 E-value=5.3e+02 Score=22.13 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHhhcCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEE
Q psy16151 111 PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFI 190 (299)
Q Consensus 111 ~~~~~~l~~l~~~~~~~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~l 190 (299)
..++....+.+... ..+.+|.+.-+..+..++| .-++..|..+.+.+.||+. ..|+.
T Consensus 133 ~~Qv~wa~~~~~~~--~~~k~IL~~Gs~~~l~~~l-------------~~~vYfdQ~g~Lt~rF~I~------~VPav-- 189 (202)
T TIGR02743 133 PEQLAWAQQQLPSC--PNVKWILTGGSVNELEKRL-------------DSRIYFDQHGKLTQKFGIK------HVPAR-- 189 (202)
T ss_pred HHHHHHHHHhcccC--CCeEEEEeCCCHHHHHHHh-------------CCceEEcCCchHhhccCce------eeceE--
Confidence 35555554433222 1467777764433332222 3366789889999999996 44554
Q ss_pred EeCCCcEEEE
Q psy16151 191 IDRNGVLRQI 200 (299)
Q Consensus 191 ID~dG~I~~~ 200 (299)
|-.+|+...+
T Consensus 190 V~q~g~~l~I 199 (202)
T TIGR02743 190 VSQEGLRLRI 199 (202)
T ss_pred EEecCCEEEE
Confidence 3467776554
No 305
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=21.27 E-value=2.4e+02 Score=20.45 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=31.2
Q ss_pred CCeEEEEEEeCCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 94 Gk~vlL~F~~~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
.+.++|+| +........-+..|..++++++++|..++.++.++
T Consensus 39 ~~~vilDl--s~v~~iDssgl~~L~~l~~~~~~~g~~l~l~~~~~ 81 (100)
T cd06844 39 GKTIVIDI--SALEFMDSSGTGVLLERSRLAEAVGGQFVLTGISP 81 (100)
T ss_pred CCEEEEEC--CCCcEEcHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 36788877 33333456678888888888888898888887764
No 306
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=21.12 E-value=2.3e+02 Score=21.11 Aligned_cols=60 Identities=15% Similarity=0.043 Sum_probs=36.1
Q ss_pred cCcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 127 INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 127 ~gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
.++.-+++.+++.+++.++.+++++. .+++...+... ..+. ......++.||+|..+...
T Consensus 67 ~g~~hia~~v~~~~d~~~~~~~l~~~------g~~~~~~~~~~---~~~~------~~~~~~~~~DpdG~~ie~~ 126 (128)
T cd07242 67 PGLHHLAFRAPSREAVDELYARLAKR------GAEILYAPREP---YAGG------PGYYALFFEDPDGIRLELV 126 (128)
T ss_pred cCeeEEEEEcCCHHHHHHHHHHHHHc------CCeEecCCccc---ccCC------CcEEEEEEECCCCcEEEEE
Confidence 35666888888877788888776443 33444333210 0010 1235788999999987664
No 307
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=20.85 E-value=4e+02 Score=20.51 Aligned_cols=32 Identities=9% Similarity=-0.049 Sum_probs=21.7
Q ss_pred CCCCCCchhhHHHHHHHHHHHhhcCcEEEEEeCCC
Q psy16151 104 LDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138 (299)
Q Consensus 104 ~~~cp~C~~~~~~l~~l~~~~~~~gv~vi~Vs~d~ 138 (299)
+...+.... ...+..+++++.++.++.|.+.+
T Consensus 111 TDG~~~~~~---~~~~~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 111 TDGRSDDGG---DPKEAAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred CCCCCCCCc---chHHHHHHHHHCCCEEEEEeccc
Confidence 554554433 45666677777899998888764
No 308
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=20.28 E-value=3.7e+02 Score=19.91 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=36.4
Q ss_pred CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 128 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 128 gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
+..-+++.+++.+++.++.+.+++. ++. +...+. ......+. ....++.||||..+....+
T Consensus 57 ~~~~~~f~v~~~~dl~~~~~~l~~~----Gv~--~~~~~~-~~~~~~~~--------~~~~~~~DPdG~~iE~~~~ 117 (120)
T cd07252 57 DLAYAGWEVADEAALDALAARLRAA----GVA--VEEGSA-ELAAERGV--------EGLIRFADPDGNRHELFWG 117 (120)
T ss_pred ceeEEEEEECCHHHHHHHHHHHHHc----CCe--EEEcCH-HHHhhCCC--------cEEEEEECCCCCEEEEEec
Confidence 4456777788877777777776444 333 322221 11112232 2468999999999877643
No 309
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.27 E-value=1.7e+02 Score=21.64 Aligned_cols=59 Identities=15% Similarity=0.035 Sum_probs=34.5
Q ss_pred CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEE
Q psy16151 128 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201 (299)
Q Consensus 128 gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~ 201 (299)
+..-+++++++.++..+|.++..+. +. .+..++... ..+| ......++-||+|..+.+.
T Consensus 64 ~~~hi~f~v~~~~~v~~~~~~~~~~----g~--~~~~~~~~~--~~~~-------~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 64 NGTHVAFAAPSREAVDAFHAAALAA----GG--TDEGAPGLR--PHYG-------PGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred CceEEEEECCCHHHHHHHHHHHHHc----CC--ccCCCCCCC--CCCC-------CCeEEEEEECCCCCEEEEe
Confidence 3457889998887788888776443 22 222222100 0001 1224679999999987653
No 310
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=20.23 E-value=7.5e+02 Score=23.46 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=35.3
Q ss_pred ccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEeccCCCCCCHHHHHHHH
Q psy16151 157 KLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLV 218 (299)
Q Consensus 157 ~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~~~~~g~~~~evl~~l 218 (299)
.+++|++.|.+.+.++.++.- -...|.|++|+++.+.....-...+-.+..+.+
T Consensus 74 ~wpiPi~L~v~~e~~~~l~~g--------~~v~L~~~eg~~~a~l~v~ev~~~dk~~~a~~v 127 (383)
T TIGR00339 74 LFSVPITLDIDDEDADDIKLG--------DRILLTDDKGQPLAILTIEEVYKPNKTKEAKKV 127 (383)
T ss_pred CcceeEEEeCCHHHHhhCCCC--------CeEEEECCCCCEEEEEEeeeeecCCHHHHHHHH
Confidence 578899999988888877541 256688887999888653333333334444433
No 311
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=20.00 E-value=4.6e+02 Score=20.93 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=36.7
Q ss_pred CcEEEEEeCCCHHhHHHHhhcccccCCCCccceeeeecCchHHHHHhCCcccCCCCceeEEEEEeCCCcEEEEEec
Q psy16151 128 NTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203 (299)
Q Consensus 128 gv~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~~gv~~~~~g~~~p~~~lID~dG~I~~~~~~ 203 (299)
++.-+++.+++.++..++.+++++. ++.+ . .+. ..+ ...+.|+-||+|..+.....
T Consensus 65 ~l~Hiaf~v~d~~dvd~~~~~L~~~----Gv~~--~-~~~-----~~~--------~~~s~yf~DPdG~~iEl~~~ 120 (157)
T cd08347 65 TVHHVAFRVPDDEELEAWKERLEAL----GLPV--S-GIV-----DRF--------YFKSLYFREPGGILFEIATD 120 (157)
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHC----CCCc--c-ccc-----ccc--------cEEEEEEECCCCcEEEEEEC
Confidence 5667899999977788888877544 3332 1 110 011 12478999999999877753
Done!