RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16151
(299 letters)
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 304 bits (780), Expect = e-105
Identities = 97/156 (62%), Positives = 123/156 (78%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
L ++PAP ++G AV++G+ KEI L DY GKY+V FFYP DFTFVCPTEI+AF+D++EEF+
Sbjct: 41 LPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFN 100
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
N +V+A S DS ++HLAW N RK GGLG +KIPLL+D +IS YGV+ + G+
Sbjct: 101 SRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAF 160
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
RGLFIID NG+LRQIT+ND PVGRSVDETLRL+ AF
Sbjct: 161 RGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAF 196
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 302 bits (776), Expect = e-105
Identities = 108/156 (69%), Positives = 128/156 (82%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
+ KPAP ++ TAVVDG KE+KLSDY GKY+V FFYPLDFTFV PTEI+AF++R E+F
Sbjct: 6 RIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVAPTEIIAFSNRAEDFR 65
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
++ EV+ SVDS FTHLAW+NTPRKEGGLG L IPLL+D+T ++S DYGV +D+G
Sbjct: 66 KLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAY 125
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
RGLFIID GVLRQIT+NDLPVGRSVDE LRLVQAF
Sbjct: 126 RGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF 161
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 303 bits (777), Expect = e-104
Identities = 125/156 (80%), Positives = 140/156 (89%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
S PAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF
Sbjct: 20 FQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFR 79
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTL
Sbjct: 80 SINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTL 139
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
RGLFIID G+LRQIT+NDLPVGRSVDETLRLVQAF
Sbjct: 140 RGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 175
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 304 bits (781), Expect = e-104
Identities = 126/156 (80%), Positives = 142/156 (91%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
+SKPAP+W+GTAV+DG+ KE+KL+DY GKYLVFFFYPLDFTFVCPTEI+AF DRLEEF
Sbjct: 63 KISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFR 122
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
INTEVVA SVDS FTHLAW+NTPR++GGLG ++IPLLSDLTH+IS DYGVYL D GHTL
Sbjct: 123 SINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTL 182
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
RGLFIID G+LRQIT+NDLPVGRSVDETLRLVQAF
Sbjct: 183 RGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF 218
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 303 bits (779), Expect = e-104
Identities = 128/156 (82%), Positives = 141/156 (90%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
+SKPAP W+GTAV++G+ KE+KLSDY GKYLVFFFYPLDFTFVCPTEI+AF+DR+ EF
Sbjct: 49 KISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFR 108
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
INTEVVA SVDS FTHLAW+ TPRK+GGLG +KIPLLSDLTH+IS DYGVYL DQGHTL
Sbjct: 109 AINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTL 168
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
RGLFIID GVLRQITMNDLPVGRSVDETLRLVQAF
Sbjct: 169 RGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF 204
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 303 bits (777), Expect = e-104
Identities = 107/156 (68%), Positives = 129/156 (82%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
V++ AP+++GTAVV G+ KEI L D+ GKYLV FFYPLDFTFVCPTEI+AF+D+ EFH
Sbjct: 28 AVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFH 87
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
+N EVVA SVDSHF+HLAW+NTPRK GGLG + I LLSDLT +IS DYGV L G L
Sbjct: 88 DVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLAL 147
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
RGLFIID NGV++ +++NDLPVGRSV+ETLRLV+AF
Sbjct: 148 RGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF 183
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 301 bits (774), Expect = e-104
Identities = 89/156 (57%), Positives = 113/156 (72%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
V K AP ++ TAVVDG E+ L Y GKY+V F PL FTFV PTEI+AF++ ++F
Sbjct: 24 QVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFE 83
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
+ +V+ AS DS ++ LAW N PRKEGGLG + IPLL+D H +S DYGV + ++G L
Sbjct: 84 EQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVAL 143
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
RGLFIID GV+R IT+NDLPVGR+VDE LRLV+AF
Sbjct: 144 RGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAF 179
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 297 bits (764), Expect = e-102
Identities = 87/156 (55%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 67 VSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
PAP + TA++ +G K++ L+ Y GK+LV FFYP+DFTFVCPTEI F+DR++EF
Sbjct: 8 DLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFS 67
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
I EV+A S+DS ++HLAW + RK GGLG++ IP+L+D T I YGV + G
Sbjct: 68 DIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAY 127
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
RGLFIID LRQIT+NDLPVGR VDE LRLV+AF
Sbjct: 128 RGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 163
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 297 bits (762), Expect = e-102
Identities = 81/157 (51%), Positives = 113/157 (71%), Gaps = 1/157 (0%)
Query: 66 LVSKPAPFWQGTAVV-DGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
++ PAP + A++ +G K++ LS Y GKY+V FFYP+DFTFVCPTEI+ F+D + F
Sbjct: 7 KLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRF 66
Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 184
+INTEV++ S DS ++HL W + RK+GGLG + IP+L+D T I+ YGV D G
Sbjct: 67 AEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVA 126
Query: 185 LRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
RG+FIID NG LRQI +ND+P+GR+V+E +RLV+A
Sbjct: 127 YRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEAL 163
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 286 bits (734), Expect = 2e-98
Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
L++ ++ A +G+ E+ D G++ VFFFYP DFTFV PTE+ D EE
Sbjct: 2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQ 61
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTL 185
++ +V + S D+HFTH AW ++ + K+K ++ D T ++ ++ D+G
Sbjct: 62 KLGVDVYSVSTDTHFTHKAWHSSSET---IAKIKYAMIGDPTGALTRNFDNMREDEGLAD 118
Query: 186 RGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
R F++D G+++ I + +GR + LR ++A
Sbjct: 119 RATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 154
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 286 bits (734), Expect = 5e-98
Identities = 70/158 (44%), Positives = 103/158 (65%), Gaps = 3/158 (1%)
Query: 66 LVSKPAPFWQGTAV-VDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEE 123
LV+K A + + + ++ + LS + G KY FYPL++TFVCPTEI+ FN +++
Sbjct: 26 LVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKD 85
Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 183
F N E++ SVDS ++HLAW N P ++GG+G ++ L+SD+ IS +Y V L D
Sbjct: 86 FENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNV-LYDNSF 144
Query: 184 TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
LRGLFIID+NG +R T+NDLP+GR+V E LR + +
Sbjct: 145 ALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI 182
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 284 bits (730), Expect = 9e-98
Identities = 71/157 (45%), Positives = 103/157 (65%), Gaps = 3/157 (1%)
Query: 67 VSKPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
AP ++ AV D E+ LSD+ GK Y++ +FYPLDFTFVCP+EI+A + L+ F
Sbjct: 2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSF 61
Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 184
+ N E++ SVDS FTHLAW TP +GG+G +K L+SD++ I+ Y V L ++
Sbjct: 62 KERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDV-LFNESVA 120
Query: 185 LRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
LR +ID+ GV++ + +N+L +GRSVDE LRL+ A
Sbjct: 121 LRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL 157
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 285 bits (731), Expect = 1e-97
Identities = 75/158 (47%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Query: 66 LVSKPAPFWQGTAVV-DGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEE 123
V K APF++ AV D E+ L+ + GK Y++ +FYPLDFTFVCP+EI+A + L+
Sbjct: 22 YVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDA 81
Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 183
FH+ N E++ SVDS +THLAW TP +GG+G +K LLSD+T IS DY V D
Sbjct: 82 FHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLF-DDSV 140
Query: 184 TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
+LR +ID NG+++ + +N+L +GRSVDE LR++ A
Sbjct: 141 SLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI 178
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 281 bits (720), Expect = 3e-96
Identities = 69/159 (43%), Positives = 105/159 (66%), Gaps = 4/159 (2%)
Query: 66 LVSKPAPFWQGTAVVDGQL--KEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLE 122
+V+K AP ++ AV+ + +LS GK ++ FF+P DFTFVCPTEI+AF+ R++
Sbjct: 2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVK 61
Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
+FH+ V+ S+DS H AW NTP ++GG+G++ P+++D+T IS DY V ++
Sbjct: 62 DFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLF-EEA 120
Query: 183 HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
LRG F+ID+N +R +NDLP+GR+ DE LR+V A
Sbjct: 121 IALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL 159
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 279 bits (717), Expect = 7e-96
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 4/157 (2%)
Query: 66 LVSKPAPFWQGTAVVDGQ-LKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
L+ ++ A G+ E+ +D GK+ + FYP DF+FVCPTE+ E
Sbjct: 2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAEL 61
Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHT 184
++ EV + S D+HF H AW +G ++ ++ D + IS + V + G
Sbjct: 62 KKLGVEVYSVSTDTHFVHKAWHENS---PAVGSIEYIMIGDPSQTISRQFDVLNEETGLA 118
Query: 185 LRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
RG FIID +GV++ I +N +GR + V+A
Sbjct: 119 DRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA 155
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 264 bits (676), Expect = 1e-89
Identities = 58/168 (34%), Positives = 87/168 (51%), Gaps = 16/168 (9%)
Query: 66 LVSKPAPFWQGTAVVDGQL------------KEIKLSDYYGKYLVFFFYPLDFTFVCPTE 113
+ P +Q TA++ G L I ++ GK+ V FF+P DFTFVCPTE
Sbjct: 5 TIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTE 64
Query: 114 ILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLD 173
I AF+ +EF + +++ S+DS F H W + L L P+LSD+ ++S
Sbjct: 65 IAAFSKLNDEFEDRDAQILGVSIDSEFAHFQW---RAQHNDLKTLPFPMLSDIKRELSQA 121
Query: 174 YGVYLSDQGHTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
GV L+ G R FI+D N ++ ++ VGR+VDE LR++ A
Sbjct: 122 AGV-LNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL 168
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 228 bits (583), Expect = 4e-75
Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYY-GKYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
+ P + A + +L Y + + F +P DFT VC TE+ E+F
Sbjct: 4 HLGATFPNFTAKASGID--GDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDF 61
Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH- 183
++N +++ S +S +H W+ + G L K +IP++ D + +++ + +
Sbjct: 62 LKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDI 121
Query: 184 -----TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
T R LF I ++ + GR+ E LR++++
Sbjct: 122 TGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL 164
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 224 bits (574), Expect = 2e-73
Identities = 54/160 (33%), Positives = 91/160 (56%), Gaps = 9/160 (5%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYY---GKYLVFFFYPLDFTFVCPTEILAFNDRLE 122
L+ + P + T IKL D+Y GK+ V F +P DFT VC TE ++F R E
Sbjct: 6 LIGERFPEMEVTTD----HGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYE 61
Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
+F ++ +++ SVDS F+H+ W + G+ ++ P+++D ++ G+ ++
Sbjct: 62 DFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGV-RIPFPIIADPQGTVARRLGLLHAESA 120
Query: 183 -HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
HT+RG+FI+D GV+R + + +GR VDE LR+V+A
Sbjct: 121 THTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL 160
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 219 bits (560), Expect = 1e-71
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
L+ AP ++ V I+ D+ G + + F +P DFT VC TE+ EF
Sbjct: 6 LLGDVAPNFEANTTVG----RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEF 61
Query: 125 HQINTEVVAASVDSHFTHLAWV---NTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ 181
+ N +++A S+DS HLAW N E KL P++ D ++++ G+ +
Sbjct: 62 AKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAE 121
Query: 182 GH------TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
T R +F+ + L+ + GR+ DE LR+V +
Sbjct: 122 KDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL 167
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 219 bits (561), Expect = 1e-71
Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 12/164 (7%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGK-YLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
+ + P ++ + + ++K D+ G + V F +P DFT V TE+ +F
Sbjct: 4 TLGEVFPNFEADSTI----GKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDF 59
Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGL-GKLKIPLLSDLTHKISLDYGVYLSDQGH 183
+ +++A S D+ H W + G+ G + P+++D T ++++ G+ D+
Sbjct: 60 KKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERT 119
Query: 184 ------TLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQAF 221
T R +FII + L+ + GR+ E LR++ +
Sbjct: 120 STGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSL 163
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 197 bits (502), Expect = 1e-63
Identities = 46/158 (29%), Positives = 65/158 (41%), Gaps = 15/158 (9%)
Query: 67 VSKPAP-FWQGTAVVDGQLKEIKLSDYYG-KYLVFFFYPLDFTFVCPTEILAFNDRLEEF 124
V AP F + D + + L Y G K ++ F+PL FT +C E+ D L EF
Sbjct: 11 VGATAPDF----TLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEF 66
Query: 125 HQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDL--THKISLDYGVYLSDQG 182
++ +A SV TH W PLLSD +S YGV+ G
Sbjct: 67 ENDDSAALAISVGPPPTHKIWATQ-------SGFTFPLLSDFWPHGAVSQAYGVFNEQAG 119
Query: 183 HTLRGLFIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
RG F++DR+G++R M R + A
Sbjct: 120 IANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA 157
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 122 bits (309), Expect = 8e-35
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 18/161 (11%)
Query: 67 VSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFH 125
+ + AP F + D +LK++KLS GK +V FYP FT VC E+ F D + +F+
Sbjct: 6 IGELAPDF----ELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFN 61
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH-- 183
Q+N V+ SVD F++ A+ L +LSD ++ Y V
Sbjct: 62 QVNAVVLGISVDPPFSNKAFKE---HNK----LNFTILSDYNREVVKKYNVAWEFPALPG 114
Query: 184 ---TLRGLFIIDRNGVLRQITMNDLPVGRS-VDETLRLVQA 220
R +F+ID+ G +R ++D P DE ++V++
Sbjct: 115 YVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS 155
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 117 bits (296), Expect = 8e-33
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 81 DGQLKEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
+ + + L + G+ V F+P F+ VC E+ F D++ + + N EV+A SVDS
Sbjct: 18 NQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDS 77
Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH----TLRGLFIIDRN 194
+ + + + L LLSD ++ Y VY D R +FI+ +
Sbjct: 78 PWCLKKFKD---ENR----LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPD 130
Query: 195 GVLRQITMNDLPVGRS-VDETLRLVQA 220
G + + D P+ DE +R
Sbjct: 131 GTVAYKWVTDNPLNEPDYDEVVREANK 157
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 106 bits (267), Expect = 2e-28
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 9/121 (7%)
Query: 79 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
+ L + L+D+ GK V P T +C T+ FN+ L NT V+ S+D
Sbjct: 27 LTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMDL 84
Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGHTLRGLFIIDRNGVL 197
F W G G +LSD H DY + +++ R +F++D + +
Sbjct: 85 PFAQKRWC------GAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTI 138
Query: 198 R 198
R
Sbjct: 139 R 139
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET:
PG4; 1.96A {Staphylococcus aureus}
Length = 166
Score = 102 bits (256), Expect = 7e-27
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 79 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
V+D L ++ L+DY GK + P T VC + FN + V+ S D
Sbjct: 31 VLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASKE---EGIVLTISADL 87
Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSDQGHTLRGLFIIDRNGVL 197
F W G + LSD +YGV + + R +F++D + +
Sbjct: 88 PFAQKRWC------ASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKV 141
Query: 198 R 198
Sbjct: 142 V 142
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex
aeolicus}
Length = 171
Score = 102 bits (256), Expect = 7e-27
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 11/123 (8%)
Query: 79 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
VV L+E + V P T VC TE FN+ + +V S+D
Sbjct: 32 VVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGME--GVDVTVVSMDL 89
Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---QGHTLRGLFIIDRNG 195
F + + + + SD ++ YGV + + +G R +FIID+ G
Sbjct: 90 PFAQKRFCES------FNIQNVTVASDFRYRDMEKYGVLIGEGALKGILARAVFIIDKEG 143
Query: 196 VLR 198
+
Sbjct: 144 KVA 146
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI,
protein structur initiative, TB structural genomics
consortium, TBSGC; 1.75A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 1y25_A
Length = 175
Score = 96.2 bits (240), Expect = 2e-24
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 12/123 (9%)
Query: 79 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
+ G L I + GK ++ +P T VC T + F++ V+ S D
Sbjct: 29 LTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDE---RAAASGATVLCVSKDL 85
Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD---QGHTLRGLFIIDRNG 195
F + G G + S DYGV ++D G R + +I +G
Sbjct: 86 PFAQKRFC------GAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADG 139
Query: 196 VLR 198
+
Sbjct: 140 NVA 142
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 95.8 bits (239), Expect = 2e-24
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 79 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
V+ L+E L+D GK + P T VC + FN+ + + V S D
Sbjct: 29 VLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLG--DVNVYTISADL 86
Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSDQGHTLRGLFIIDRNGVL 197
F W G+ K+ LSD +GVY+ + R +F++D NG +
Sbjct: 87 PFAQARW----CGANGID--KVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKV 140
Query: 198 R 198
Sbjct: 141 V 141
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 95.9 bits (239), Expect = 4e-24
Identities = 31/124 (25%), Positives = 47/124 (37%), Gaps = 12/124 (9%)
Query: 79 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
+V L ++ LS + GK V +P T VC + FN E NT V+ S D
Sbjct: 63 LVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELE--NTVVLCISSDL 120
Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSD---QGHTLRGLFIIDRN 194
F + G + LS L YGV +++ G T R + ++D
Sbjct: 121 PFAQSRFCGA------EGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQ 174
Query: 195 GVLR 198
+
Sbjct: 175 DNVI 178
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 93.5 bits (233), Expect = 1e-23
Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 12/124 (9%)
Query: 79 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
+V L ++ L+D+ K V +P T VC T + FN + + NT V+ S D
Sbjct: 28 LVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISADL 85
Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDL-THKISLDYGVYLSD---QGHTLRGLFIIDRN 194
F + G +S H + GV + G T R + ++D
Sbjct: 86 PFAQARFCGA------EGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQ 139
Query: 195 GVLR 198
+
Sbjct: 140 NNVL 143
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET: CIT;
2.15A {Sulfolobus solfataricus}
Length = 161
Score = 90.0 bits (224), Expect = 3e-22
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 85 KEIKLSDYYGKY-LVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHL 143
++I LSDY GK+ +V +FYP D T E AF D + + V+ S D +H
Sbjct: 19 EKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHK 78
Query: 144 AWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQITMN 203
+ K L L+SD KI YG R F+ID+ G++R I +
Sbjct: 79 RFKE---KYK----LPFILVSDPDKKIRELYGAKGFI-L-PARITFVIDKKGIIRHIYNS 129
Query: 204 DLPVGRSVDETLRLVQA 220
+ V+E L+ ++
Sbjct: 130 QMNPANHVNEALKALKQ 146
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 88.0 bits (218), Expect = 7e-21
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 10/124 (8%)
Query: 79 VVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDS 138
+VD Q + L + + +L R + +++ +VDS
Sbjct: 33 LVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDSWPHLKLIVITVDS 92
Query: 139 HFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK-ISLDYGVYLSD---QGHTLRGLFIIDRN 194
+ + G I LLS L + YGV +++ G+T + + D
Sbjct: 93 PSSLARARHE------HGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAA 146
Query: 195 GVLR 198
V+
Sbjct: 147 NVVH 150
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 85.0 bits (211), Expect = 2e-20
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Query: 85 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 144
+ L + G +LV +FYP D T TE L FN L EF + +++ S DS +H
Sbjct: 26 TQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDN 85
Query: 145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL--SDQGHTLRGL----FIIDRNGVLR 198
+ K+G PL+SD + + V + G + G+ F++ G +
Sbjct: 86 FCA---KQG----FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVV 138
Query: 199 QI 200
Q
Sbjct: 139 QA 140
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 83.9 bits (208), Expect = 7e-20
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 85 KEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLA 144
LSDY ++LV +FYP D T TE L FN L +F QIN V+ S DS +H +
Sbjct: 42 TCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDS 101
Query: 145 WVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYL--SDQGHTLRGL----FIIDRNGVLR 198
+ K+G PL+SD + + V + G + G+ F+I +
Sbjct: 102 FCA---KQG----FTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIV 154
Query: 199 QI 200
+
Sbjct: 155 EA 156
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys
peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces
cerevisiae} SCOP: c.47.1.10
Length = 159
Score = 65.8 bits (161), Expect = 2e-13
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 10/114 (8%)
Query: 85 KEIKLSDYY--GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTH 142
I L + +VFF YP T + F D +E + V S DS +
Sbjct: 24 DSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTSQ 82
Query: 143 LAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGV 196
+ + K+ L LLSD + G + ++R FI +
Sbjct: 83 KKFQS---KQN----LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKL 129
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 60.7 bits (148), Expect = 4e-11
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 242 QVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFIRQQEIEKFQKINIDS 292
QVTE+T IL+ G TC RG +KGKG + TYF+ + + N+ S
Sbjct: 170 QVTEETSLILQTLGYTCTCRGIINVKGKGDLKTYFVNTEMSRSLSQSNLAS 220
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 53.5 bits (129), Expect = 4e-09
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 20/139 (14%)
Query: 67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTF----VCPTEILAFNDRLE 122
+ + AP + T DG K++ LS GK ++ L FT VC E+ +
Sbjct: 9 IGEMAPDFTITLT-DG--KQVTLSSLRGKVVM-----LQFTASWCGVCRKEMPFIEKDIW 60
Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
H+ N + +D + + G + PL D I Y + +
Sbjct: 61 LKHKDNADFALIGIDRDEPLEKVLAFAKSTG----VTYPLGLDPGADIFAKYALRDAGIT 116
Query: 183 HTLRGLFIIDRNGVLRQIT 201
+IDR G + ++T
Sbjct: 117 RN----VLIDREGKIVKLT 131
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 50.4 bits (121), Expect = 6e-08
Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 27/157 (17%)
Query: 67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFV----CPTEILAFNDRLE 122
AP G + G + L+D+ GKY++ +DF F C E
Sbjct: 5 TGSVAPAITGIDL-KG--NSVSLNDFKGKYVL-----VDFWFAGCSWCRKETPYLLKTYN 56
Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
F + S D W +E ++ L D + Y +
Sbjct: 57 AFKDKGFTIYGVSTDR--REEDWKKA-IEEDKSYWNQVLLQKDDVKDVLESYCI------ 107
Query: 183 HTLRGL---FIIDRNGVLRQITMNDLPVGRSVDETLR 216
G ++D G + + + +V++ +
Sbjct: 108 ---VGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVN 141
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 49.2 bits (118), Expect = 1e-07
Identities = 28/142 (19%), Positives = 48/142 (33%), Gaps = 33/142 (23%)
Query: 67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRL 121
AP + G +KLSD G + LDF ++ C N
Sbjct: 5 KGDKAPDFALPGK-TG---VVKLSDKTGSVVY-----LDFWASW-CGPCRQSFPWMNQMQ 54
Query: 122 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ 181
++ +VVA ++D+ + + + + D + YGV
Sbjct: 55 AKYKAKGFQVVAVNLDA--KTGDAMKFLAQVP----AEFTVAFDPKGQTPRLYGV----- 103
Query: 182 GHTLRGL---FIIDRNGVLRQI 200
+G+ F+IDRNG +
Sbjct: 104 ----KGMPTSFLIDRNGKVLLQ 121
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 48.4 bits (116), Expect = 2e-07
Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 32/140 (22%)
Query: 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 123
AP + +G K I+LSD GK + L+F T+ C E ++ +
Sbjct: 4 SDAPNFVLEDT-NG--KRIELSDLKGKGVF-----LNFWGTW-CEPCKKEFPYMANQYKH 54
Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 183
F E+VA +V + +A N + G + P++ D ++ Y V
Sbjct: 55 FKSQGVEIVAVNVGE--SKIAVHNFMKSYG----VNFPVVLDTDRQVLDAYDV------- 101
Query: 184 TLRGL---FIIDRNGVLRQI 200
L F+I+ G + ++
Sbjct: 102 --SPLPTTFLINPEGKVVKV 119
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 47.7 bits (114), Expect = 4e-07
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 31/143 (21%)
Query: 68 SKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLE 122
+ A + + +G K + L+D GKY+ +D T+ C E+ A + E
Sbjct: 7 NPSAASFSYPDI-NG--KTVSLADLKGKYIY-----IDVWATW-CGPCRGELPALKELEE 57
Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
++ + V+ S D AW N K+ G I L Y +
Sbjct: 58 KYAGKDIHFVSLSCDK--NKKAWENMVTKDQLKG---IQLHMGTDRTFMDAYLI------ 106
Query: 183 HTLRGL---FIIDRNGVLRQITM 202
G+ ++DR+G + M
Sbjct: 107 ---NGIPRFILLDRDGKIISANM 126
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 1e-06
Identities = 54/346 (15%), Positives = 100/346 (28%), Gaps = 136/346 (39%)
Query: 11 IVDIVQTLEDRVHHVLFKKPFYAK-------------RAKNPYFPFCTQPSSS-IVFLKL 56
I +TL + + L + + + Y + P S ++ +
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL--LSIPISCPLIGVIQ 245
Query: 57 FLHYFI-CFKLVSKPAPF---WQGTAVVDGQL---KEIKLSD----YYG---KYLVFFF- 101
HY + L P +G L I +D ++ K + F
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 102 --------YP---LDFTFV---------CPTEILAFND----RLEEF-HQINTEVVAASV 136
YP L + + P+ +L+ ++ +++++ ++ N+ +
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL---PA 362
Query: 137 DSHFTHLAWVNTPRK----------------------EGGLGKLKIP------------- 161
++ VN + GL + +IP
Sbjct: 363 GKQ-VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 162 ---------LLSDLTHKISLDYG--------------VYLSDQGHTLRGL--FIIDRNGV 196
LL + I+ D VY + G LR L I +R +
Sbjct: 422 PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER--I 479
Query: 197 LRQITMNDLPVGRSVD-ETLRLVQAFH----DPLRTGAINGLSLLV 237
+ I LP V ET +A H P G +GL +L
Sbjct: 480 VDCIIR--LP----VKWETTTQFKATHILDFGP---GGASGLGVLT 516
Score = 43.5 bits (102), Expect = 6e-05
Identities = 50/290 (17%), Positives = 88/290 (30%), Gaps = 77/290 (26%)
Query: 46 QPSSSIVFLKLFLHYFICFKLVSKPAPFWQGTAVVDGQLKEI-KLSDYYGKYLVFFFYPL 104
+P++ + FL Y VS GQ ++ L L F
Sbjct: 53 EPTTPAELVGKFLGY------VSSLVE--PSKV---GQFDQVLNLC------LTEF---- 91
Query: 105 DFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKE------------ 152
+ ++ +I A +L + + + ++ T P +
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 153 ---------GGLGKLKIPL--LSDLTHKISLDYGVYLSDQGHTLRGLFIIDRNGVLRQIT 201
GG G L DL Y Y H L G I L ++
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDL-------YQTY-----HVLVGDLIKFSAETLSELI 199
Query: 202 MNDLPVGRSVDETLRLVQAFHDP--------LRTGAINGLSLLVIGLFQVT--EKTCDIL 251
L + + L +++ +P L + I S +IG+ Q+ T +L
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI---SCPLIGVIQLAHYVVTAKLL 256
Query: 252 E-DHG-VTCELRGRTFIKGKGLITTYFIRQ-QEIEKFQKINIDSKSYMKI 298
G + L+G T +GL+T I + E F + + +
Sbjct: 257 GFTPGELRSYLKGAT-GHSQGLVTAVAIAETDSWESFFVS---VRKAITV 302
Score = 31.9 bits (72), Expect = 0.26
Identities = 28/162 (17%), Positives = 50/162 (30%), Gaps = 55/162 (33%)
Query: 28 KKPFYAKRAKNPYFPFCTQPSSSIVFLKLFLHYFICFKLVSKPAPF-----WQGTAVVDG 82
+ PF ++R + S FL + +PF + +++
Sbjct: 406 RIPF-SER----------KLKFSNRFLPVA-------------SPFHSHLLVPASDLINK 441
Query: 83 QLKEIKLSDYYGKYLVFFFYPLDFTF------VCPTEILAFNDRLEEFHQINTEVV--AA 134
L + +S + K + P+ TF V I +R+ I V
Sbjct: 442 DLVKNNVS-FNAKDIQI---PVYDTFDGSDLRVLSGSIS---ERI--VDCIIRLPVKWET 492
Query: 135 SVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 176
+ TH+ ++ G L LTH+ GV
Sbjct: 493 TTQFKATHI--LD-------FGPGGASGLGVLTHRNKDGTGV 525
Score = 30.0 bits (67), Expect = 1.1
Identities = 37/226 (16%), Positives = 72/226 (31%), Gaps = 67/226 (29%)
Query: 104 LDFTFVCPTEILAFNDRL-EEFHQI---NTEVVAASVD--------SHFTHLAWVNTPRK 151
L+ + PT +L E+F++I TE AA + F L +V++ +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF--LGYVSSLVE 73
Query: 152 EGGLGKLKIPLLSDLTHKISLDY--GVYLSDQG-HTL-------RGLFIIDRNGVLRQIT 201
+G+ +L + L YL H L ++ +++
Sbjct: 74 PSKVGQFD-QVL-----NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 202 MNDLPVGRSVDETLR--LVQAFHDPLRTGAINGLSLLVIGLF--QVTEKTCDILEDHGVT 257
+ R D+ L +A + G ++ +F Q E
Sbjct: 128 TARIMAKRPFDKKSNSALFRA----VGEGNAQ-----LVAIFGGQGNTDDY--FE----- 171
Query: 258 CELRGRTFIKGKGLITTY------FIRQ--QEIEKFQKINIDSKSY 295
ELR L TY I+ + + + + +D++
Sbjct: 172 -ELR--------DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Score = 27.7 bits (61), Expect = 5.9
Identities = 42/265 (15%), Positives = 75/265 (28%), Gaps = 97/265 (36%)
Query: 11 IVDIV----------------QTLEDRVHHVLFKKPFYAKRAKNPYFPFCTQPSSSIVFL 54
I+DIV + + + ++F+ K F + S+S F
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 55 ----KLFLHYF--ICFKLVSKPAPFWQGTAVVDGQLKE---IKLSDYY-----GKY--LV 98
L F L+ K A F LK I + G+Y L
Sbjct: 1721 SEKGLLSATQFTQPALTLMEK-AAFE--------DLKSKGLIPADATFAGHSLGEYAAL- 1770
Query: 99 FFFYPLDFTFVCPTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKL 158
++++ + EVV +A PR E G
Sbjct: 1771 ----------ASLADVMSIESLV--------EVVFYR--GMTMQVA---VPRDELGRSNY 1807
Query: 159 KI----P----------LLSDLTHKISLDYGVYLS--------DQ----GHTLRGL---- 188
+ P L + ++ G + Q G LR L
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD-LRALDTVT 1866
Query: 189 FIIDRNGVLRQITMNDLPVGRSVDE 213
+++ + ++I + +L S++E
Sbjct: 1867 NVLNFIKL-QKIDIIELQKSLSLEE 1890
Score = 27.7 bits (61), Expect = 6.8
Identities = 37/243 (15%), Positives = 69/243 (28%), Gaps = 88/243 (36%)
Query: 78 AVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ--INTEVVAAS 135
+VDG+LK K+ ++ +TF +L +F Q +
Sbjct: 1695 TIVDGKLKTEKIFKEINEHS------TSYTFRSEKGLL----SATQFTQPAL----TLME 1740
Query: 136 VDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT-HKISLDYGVY--LSDQGHTLRGLFIID 192
+ F L + +G IP + H SL G Y L+
Sbjct: 1741 K-AAFEDL------KSKGL-----IPADATFAGH--SL--GEYAALASLA---------- 1774
Query: 193 RNGVLRQITMNDLPVGRSVDETLRLV----QAFHDPLRTG----------AINGLSLLVI 238
V+ S++ + +V + AIN +
Sbjct: 1775 --DVM------------SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS 1820
Query: 239 GLFQVTEKTCD-ILEDHGVTCE-----LRGRTF-IKG--KGLITTYFIRQQEIEKFQKI- 288
+ + + + + G E + + + G + L T + F K+
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTV-----TNVLNFIKLQ 1875
Query: 289 NID 291
ID
Sbjct: 1876 KID 1878
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 46.2 bits (110), Expect = 1e-06
Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 37/143 (25%)
Query: 67 VSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDR 120
AP F + + L+ Y GK ++ ++F ++ CP E+ + +
Sbjct: 17 TGALAPNF----KLPTLSGENKSLAQYRGKIVL-----VNFWASW-CPYCRDEMPSMDRL 66
Query: 121 LEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 180
++ F + + V+A +V+ + R+ + LSD T ++ YG
Sbjct: 67 VKSFPKGDLVVLAVNVEK-----RFPEKYRRAP----VSFNFLSDATGQVQQRYGA---- 113
Query: 181 QGHTLRGL---FIIDRNGVLRQI 200
L FI+DR G++RQ
Sbjct: 114 -----NRLPDTFIVDRKGIIRQR 131
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 45.4 bits (108), Expect = 2e-06
Identities = 22/130 (16%), Positives = 36/130 (27%), Gaps = 32/130 (24%)
Query: 80 VDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLEEFHQINTEVVAA 134
+DG + GK V L F + CPT E + + + EV
Sbjct: 13 LDG--HDFHGESLLGKPAV-----LWFWAPW-CPTCQGEA----PVVGQVAASHPEVTFV 60
Query: 135 SVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGL---FII 191
V A K L+D + ++GV +
Sbjct: 61 GVAGLDQVPAMQEFVNKYPVKT---FTQLADTDGSVWANFGVT---------QQPAYAFV 108
Query: 192 DRNGVLRQIT 201
D +G + +
Sbjct: 109 DPHGNVDVVR 118
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 45.3 bits (108), Expect = 2e-06
Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 26/125 (20%)
Query: 85 KEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEEFHQINTEVVAASVDSH 139
K +LSDY GK + L F ++ C + ++ +E + S
Sbjct: 13 KTYRLSDYKGKKVY-----LKFWASW-CSICLASLPDTDEIAKEAGDDYVVLTVVSPGH- 65
Query: 140 FTHLAWVNTPRKE-GGLGKLKIPLLSDLTHKISLDYGVYLSDQGHTLRGL---FIIDRNG 195
+ GL +P+L D + K+ YGV R ID+ G
Sbjct: 66 -KGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGV---------RSYPTQAFIDKEG 115
Query: 196 VLRQI 200
L +
Sbjct: 116 KLVKT 120
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 45.0 bits (107), Expect = 3e-06
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 33/165 (20%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDR 120
L+ K AP T G L D KY + FF+ C E D
Sbjct: 6 LLGKKAPNLYMTDT-TG--TYRYLYDVQAKYTILFFWDSQCGH------CQQETPKLYDW 56
Query: 121 LEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTH--KISLDYGVYL 178
+ +V AA+++ W+ R + G + D + + Y +
Sbjct: 57 WLKNRAKGIQVYAANIER--KDEEWLKFIRSKKIGG---WLNVRDSKNHTDFKITYDI-- 109
Query: 179 SDQGHTLRGL---FIIDRNGVLRQITMNDLPVGRSVDETLRLVQA 220
+++D+N V+ + + + + + ++
Sbjct: 110 -------YATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSLKT 147
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 45.0 bits (107), Expect = 4e-06
Identities = 23/143 (16%), Positives = 47/143 (32%), Gaps = 31/143 (21%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDR 120
L SK AP + + G K + +D GK + ++F CP E+
Sbjct: 3 LDSKTAPAFSLPDL-HG--KTVSNADLQGKVTL-----INFWFPS-CPGCVSEMPKIIKT 53
Query: 121 LEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 180
++ N +V+A + + + G L ++ D + +G
Sbjct: 54 ANDYKNKNFQVLAVAQP-IDPIESVRQYVKDYG----LPFTVMYDADKAVGQAFGT---- 104
Query: 181 QGHTLRGL---FIIDRNGVLRQI 200
+ +I + G + +
Sbjct: 105 -----QVYPTSVLIGKKGEILKT 122
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 44.3 bits (105), Expect = 6e-06
Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 36/142 (25%)
Query: 85 KEIKLSDYYGKYLVFFFYPLDFTF----VCPTEILAFNDRLEEFHQINTEVVAASVDSHF 140
L+D GK ++ +DFT + LA + ++ E+ S+D
Sbjct: 26 NTRSLTDLKGKVVL-----IDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDG-- 78
Query: 141 THLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGVYLSDQGHTLRGL---FIIDRN 194
W + L + D Y V L F+++RN
Sbjct: 79 DEHFWKTSAD------NLPWVCVRDANGAYSSYISLYNV---------TNLPSVFLVNRN 123
Query: 195 GVLRQITMNDLPVGRSVDETLR 216
L N + +DE ++
Sbjct: 124 NELSARGEN----IKDLDEAIK 141
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 43.9 bits (104), Expect = 8e-06
Identities = 18/142 (12%), Positives = 40/142 (28%), Gaps = 29/142 (20%)
Query: 67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRL 121
+S A G D L + ++ T+ C E+ A +
Sbjct: 1 MSLSADELAGWK--DN--TPQSLQSLKAPVRI-----VNLWATW-CGPCRKEMPAMSKWY 50
Query: 122 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQ 181
+ + + ++V ++D+ ++ + P+ Y
Sbjct: 51 KAQKKGSVDMVGIALDTSDNIGNFLKQ-------TPVSYPIWRYTGANSRNFMKTY---- 99
Query: 182 GHTLRGL---FIIDRNGVLRQI 200
G+T+ L + RQ
Sbjct: 100 GNTVGVLPFTVVEAPKCGYRQT 121
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 44.5 bits (106), Expect = 9e-06
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 242 QVTEKTCDILEDHGVTCELRGRTFIKGKGLITTYFI 277
QV ++ + L+D RG +KGKG++ T+++
Sbjct: 148 QVPDEVYERLKD-DFVLRERGHINVKGKGVMRTWYL 182
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 43.4 bits (103), Expect = 1e-05
Identities = 22/140 (15%), Positives = 33/140 (23%), Gaps = 34/140 (24%)
Query: 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 123
+ T + G + GK V L F + CP E L +
Sbjct: 2 DERLQFTATTL-SG--APFDGASLQGKPAV-----LWFWTPW-CPFCNAEA----PSLSQ 48
Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 183
N V + + A + K L L+D I Y V
Sbjct: 49 VAAANPAVTFVGIATRADVGAMQSFVSKYN----LNFTNLNDADGVIWARYNV------- 97
Query: 184 TLRGL---FIIDRNGVLRQI 200
+G +
Sbjct: 98 --PWQPAFVFYRADGTSTFV 115
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 42.8 bits (101), Expect = 2e-05
Identities = 17/145 (11%), Positives = 41/145 (28%), Gaps = 27/145 (18%)
Query: 67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFT----FVCPTEILAFNDRLE 122
AP + D + + G+Y + L+F + + +
Sbjct: 9 PGDLAPRIEFLGN-DA---KASFHNQLGRYTL-----LNFWAAYDAESRARNVQLANEVN 59
Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
+F + + S+D + T + + + ++ Y +
Sbjct: 60 KFGPDKIAMCSISMDE--KESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDL------ 111
Query: 183 HTLRGL---FIIDRNGVLRQITMND 204
R F+I+ GV+ +
Sbjct: 112 ---RKGFKNFLINDEGVIIAANVTP 133
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 42.7 bits (101), Expect = 2e-05
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 33/141 (23%)
Query: 69 KPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLE 122
PAP F + + +KLSD G+ ++ ++F T+ CP EI +
Sbjct: 6 NPAPDF----TLNTLNGEVVKLSDLKGQVVI-----VNFWATW-CPPCREEIPSMMRLNA 55
Query: 123 EFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQG 182
++ S+D +A RK G +P+L D ++ YG
Sbjct: 56 AMAGKPFRMLCVSIDEG-GKVAVEEFFRKTG----FTLPVLLDADKRVGKLYGT------ 104
Query: 183 HTLRGL---FIIDRNGVLRQI 200
G+ F+IDR+GV+ +
Sbjct: 105 ---TGVPETFVIDRHGVILKK 122
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 42.9 bits (101), Expect = 2e-05
Identities = 20/154 (12%), Positives = 44/154 (28%), Gaps = 40/154 (25%)
Query: 67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRL 121
V + + T + DG + I L++ G ++ L F + CP +
Sbjct: 13 VLEREASFSLTTI-DG--EVISLNNVGGDVVI-----LWFMAAW-CPSCVYMADLLDRLT 63
Query: 122 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLG------------KLKIPLLSDLTHK 169
E++ +I V+A + A ++
Sbjct: 64 EKYREI--SVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGS 121
Query: 170 ISLDYGVYLSDQGHTLRGL---FIIDRNGVLRQI 200
+ + V R + I+D++ +
Sbjct: 122 LVEKFNV---------RSIDYIVIMDKSSNVLYA 146
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 42.8 bits (101), Expect = 2e-05
Identities = 15/143 (10%), Positives = 45/143 (31%), Gaps = 26/143 (18%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDR 120
+ P + + + + K + + F ++ CP E+
Sbjct: 13 TATVPHT---MSTMKTADNRPASVYLKKDKPTL-----IKFWASW-CPLCLSELGQAEKW 63
Query: 121 LEEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 180
++ + ++ + + GL K+P+++D I+ + +
Sbjct: 64 AQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNI---- 119
Query: 181 QGHTLRGL---FIIDRNGVLRQI 200
+I ++G +++I
Sbjct: 120 -----SVYPSWALIGKDGDVQRI 137
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 42.3 bits (100), Expect = 5e-05
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 242 QVTEKTCDILED-HGVTCELRGRTFIKGKGLITTYF 276
++E L RG +KGKG + TY
Sbjct: 148 HISEACYCCLRSKERFEIRERGNITVKGKGTMRTYL 183
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 41.3 bits (97), Expect = 1e-04
Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 26/138 (18%)
Query: 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLEE 123
P A D K KLSD+ GK L+ ++ T+ C E+ A ++ +
Sbjct: 38 LKLP---DLAFEDADGKPKKLSDFRGKTLL-----VNLWATW-CVPCRKEMPALDELQGK 88
Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 183
N EVVA ++D+ T KE L +L +D K+ D
Sbjct: 89 LSGPNFEVVAINIDT--RDPEKPKTFLKEANLTRL--GYFNDQKAKVFQDLKAIGR---- 140
Query: 184 TLRGL---FIIDRNGVLR 198
G+ ++D G
Sbjct: 141 -ALGMPTSVLVDPQGCEI 157
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 41.6 bits (98), Expect = 1e-04
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 242 QVTEKTCDILED-----HGVTCELRGRTFIKGKGLITTYFI 277
V+E T L E RG +KGK +
Sbjct: 156 NVSEYTYRCLMSPENSDPQFHLEHRGPVSMKGKKEPMQVWF 196
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 40.0 bits (94), Expect = 2e-04
Identities = 18/140 (12%), Positives = 50/140 (35%), Gaps = 30/140 (21%)
Query: 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLEE 123
+ + +G ++I + + G+ + L F ++ CP E+ F +
Sbjct: 13 AVPAVFLMKTI-EG--EDISIPNK-GQKTI-----LHFWTSW-CPPCKKELPQFQSFYDA 62
Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSDQGH 183
+ ++V ++ + + V K L P++ D ++ +Y +
Sbjct: 63 HPSDSVKLVTVNLVNSEQNQQVVEDFIKANKL---TFPIVLDSKGELMKEYHI------- 112
Query: 184 TLRGL---FIIDRNGVLRQI 200
+ F+++ G + +
Sbjct: 113 --ITIPTSFLLNEKGEIEKT 130
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 39.8 bits (93), Expect = 4e-04
Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 39/157 (24%)
Query: 69 KPAPFWQGTAV-VDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCP---TEILAFNDRLE 122
+ P G ++ +G +I LSD+ + ++ L+ + C +E E
Sbjct: 35 QQLPDIGGDSLMEEG--TQINLSDFENQVVI-----LNAWGQW-CAPCRSESDDLQIIHE 86
Query: 123 EFH------QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGV 176
E V+ +V + + + G L P + D + G
Sbjct: 87 ELQAAGNGDTPGGTVLGINVRDY-SRDIAQDFVTDNG----LDYPSIYDPPFMTAASLGG 141
Query: 177 YLSDQGHTLRGL---FIIDRNG-----VLRQITMNDL 205
+ ++D+ LR++T D+
Sbjct: 142 V------PASVIPTTIVLDKQHRPAAVFLREVTSKDV 172
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 38.9 bits (91), Expect = 4e-04
Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 31/141 (21%)
Query: 66 LVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFF----YPLDFTFVCPTEILAFNDRL 121
+P P + G + + + ++ F+ C E + R+
Sbjct: 6 KPGEPLPDFLLLDP-KG--QPVTPATVSKPAVIVFWASWCTV------CKAEFPGLH-RV 55
Query: 122 EEFHQINTEVVAASV-DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISLDYGVYLSD 180
E + V++ D+ L ++ K + D H+++ + V
Sbjct: 56 AEETGVPFYVISREPRDTREVVLEYM----KTYPRFIPLLASDRDRPHEVAARFKVL--- 108
Query: 181 QGHTLRGL---FIIDRNGVLR 198
G F++DR G +
Sbjct: 109 ------GQPWTFVVDREGKVV 123
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 38.8 bits (91), Expect = 5e-04
Identities = 24/149 (16%), Positives = 49/149 (32%), Gaps = 36/149 (24%)
Query: 67 VSKPAPFWQGTAVVDGQLKEIKLS--DYYGKYLVFFFYPLDFT----FVCPTEILAFNDR 120
V K AP++ G +++ S + +YL+ L+F P
Sbjct: 7 VGKSAPYFSLPNE-KG--EKLSRSAERFRNRYLL-----LNFWASWCDPQPEANAELKRL 58
Query: 121 LEEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLDYGV 176
+E+ + N ++ S+D AW +K+ L + D T + + Y +
Sbjct: 59 NKEYKKNKNFAMLGISLDI--DREAWETAIKKDT----LSWDQVCDFTGLSSETAKQYAI 112
Query: 177 YLSDQGHTLRGL---FIIDRNGVLRQITM 202
L ++ G + +
Sbjct: 113 ---------LTLPTNILLSPTGKILARDI 132
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 38.9 bits (91), Expect = 5e-04
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 37/145 (25%)
Query: 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF--TFVCPT---EILAFNDRLEE 123
PAP + G V DG K + GK + ++F T+ CP EI +
Sbjct: 12 TPAPSFSGVTV-DG--KPFSSASLKGKAYI-----VNFFATW-CPPCRSEIPDMVQVQKT 62
Query: 124 FHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSD-----LTHKISLDYGVYL 178
+ V +V+ N + +G + P++ +D G+
Sbjct: 63 WASRGFTFVGIAVNE--QLPNVKNYMKTQG----IIYPVMMATPELIRAFNGYIDGGI-- 114
Query: 179 SDQGHTLRGL---FIIDRNGVLRQI 200
G+ F+ID +G + +
Sbjct: 115 -------TGIPTSFVIDASGNVSGV 132
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 37.7 bits (88), Expect = 0.001
Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 48/153 (31%)
Query: 67 VSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDF-TFVCPT---EILAFNDRL 121
+ +P P A ++G + + K + + F + C + N
Sbjct: 3 LRQPMPELTGEKAWLNG--EVTREQLIGEKPTL-----IHFWSISCHLCKEAMPQVN-EF 54
Query: 122 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI-----------PLLSDLTHKI 170
+ +Q VVA V+ PR E L KI P+ D H +
Sbjct: 55 RDKYQDQLNVVA------------VHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHAL 102
Query: 171 SLDYGVYLSDQGHTLRGL---FIIDRNGVLRQI 200
+ + + ++ D+ G LR
Sbjct: 103 TDAFEN---------EYVPAYYVFDKTGQLRHF 126
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase,
methylysine binding, STR genomics consortium, SGC,
alternative promoter usage; HET: DNA BTB; 2.30A {Homo
sapiens}
Length = 154
Score = 37.5 bits (86), Expect = 0.001
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 72 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 128
+W G V + ++ G V +F F+ VC +++ + FHQ
Sbjct: 31 SWWPGRIVSWWMTGRSRAAE--GTRWVMWFGDGKFSVVCVEKLMPLSSFCSAFHQAT 85
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 37.3 bits (87), Expect = 0.001
Identities = 17/152 (11%), Positives = 48/152 (31%), Gaps = 40/152 (26%)
Query: 67 VSKPAPFWQGTAVVDGQLKEIKLSDYY--GKYLVFFFYPLDF--TFVCP-----TEILAF 117
+ K APF+ G ++I S K L+ ++F ++
Sbjct: 7 IGKYAPFFSLPNA-KG--EKITRSSDAFKQKSLL-----INFWASW-NDSISQKQSNSEL 57
Query: 118 NDRLEEFH-QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLT---HKISLD 173
+ +++ ++ S+D W + +++ L + D +++
Sbjct: 58 REIYKKYKKNKYIGMLGISLDV--DKQQWKDAIKRDT----LDWEQVCDFGGLNSEVAKQ 111
Query: 174 YGVYLSDQGHTLRGL---FIIDRNGVLRQITM 202
Y + + ++ +G + +
Sbjct: 112 YSI---------YKIPANILLSSDGKILAKNL 134
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 37.5 bits (87), Expect = 0.002
Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 12/141 (8%)
Query: 65 KLVSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCP---TEILAFNDRL 121
L + P V+ + + D GK +V F +CP + ++
Sbjct: 3 SLDNAPLLELDVQEWVNH--EGLSNEDLRGKVVVVEV----FQMLCPGCVNHGVPQAQKI 56
Query: 122 EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI--PLLSDLTHKISLDYGVYLS 179
++V + S F H + + + + I P+ D+ +
Sbjct: 57 HRMID-ESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKK 115
Query: 180 DQGHTLRGLFIIDRNGVLRQI 200
+ + + DR G +RQ+
Sbjct: 116 YRLEGTPSIILADRKGRIRQV 136
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 36.9 bits (86), Expect = 0.002
Identities = 19/136 (13%), Positives = 34/136 (25%), Gaps = 36/136 (26%)
Query: 85 KEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRL---EEFHQINTEVVAASV 136
++S +Y + FFY C F + E V+A
Sbjct: 18 DNSRMSRLKAQYTMLFFYDPDCSN------CRKFEKLFAEIPAFVEMVENGTLRVLAIYP 71
Query: 137 DSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL--DYGVYLSDQGHTLRGL---FII 191
D W + + I Y + R +++
Sbjct: 72 DE--NREEWATKAVYMP----QGWIVGWNKAGDIRTRQLYDI---------RATPTIYLL 116
Query: 192 DRNG--VLRQITMNDL 205
D +L+ +M L
Sbjct: 117 DGRKRVILKDTSMEQL 132
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 38.4 bits (89), Expect = 0.002
Identities = 23/125 (18%), Positives = 37/125 (29%), Gaps = 26/125 (20%)
Query: 85 KEIKLSDYYGKYLVFFFYPLDF-TFVCPT---EILAFNDRLEEFHQINTEVVAASVDSHF 140
K I L GK ++ +DF + C I + + V+ +
Sbjct: 73 KPIDLKSLRGKVVL-----IDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPE-Y 126
Query: 141 THLAWVNTPRKEGGLGKLKI--PLLSDLTHKISLDYGVYLSDQGHTLRGL---FIIDRNG 195
K G L I P+ D + +Y R ++ID G
Sbjct: 127 AFEKVPGNVAK--GAANLGISYPIALDNNYATWTNYRN---------RYWPAEYLIDATG 175
Query: 196 VLRQI 200
+R I
Sbjct: 176 TVRHI 180
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 36.2 bits (84), Expect = 0.003
Identities = 25/139 (17%), Positives = 44/139 (31%), Gaps = 33/139 (23%)
Query: 67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRL 121
+ K P G + E+++ GK + F+F P +
Sbjct: 4 LDKYLP---GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPP------ARGFTPQLIEFY 54
Query: 122 EEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLS 179
++FH+ N EVV + D + K L +P S+ K+S + V
Sbjct: 55 DKFHESKNFEVVFCTWDE--EEDGFAGYFAKMPWLA---VPFAQSEAVQKLSKHFNV--- 106
Query: 180 DQGHTLRG---LFIIDRNG 195
L +D +
Sbjct: 107 ------ESIPTLIGVDADS 119
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 36.2 bits (84), Expect = 0.003
Identities = 18/156 (11%), Positives = 37/156 (23%), Gaps = 41/156 (26%)
Query: 66 LVSKPAP-FWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFND 119
+ A F + L + +Y + F C I
Sbjct: 6 RLGTKALNF----TYTLDSGVKGTLYQFPAEYTLLFINNPGCHA------CAEMIEGLKA 55
Query: 120 RL---EEFHQINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHKISL--DY 174
+V++ D W + D I Y
Sbjct: 56 SPVINGFTAAKKLKVLSIYPDE--ELDEWKKHRNDFA----KEWTNGYDKELVIKNKNLY 109
Query: 175 GVYLSDQGHTLRGL---FIIDRNG--VLRQITMNDL 205
+ R + +++D+N +L+ T+ +
Sbjct: 110 DL---------RAIPTLYLLDKNKTVLLKDATLQKV 136
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 35.5 bits (82), Expect = 0.007
Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 28/145 (19%)
Query: 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCP---TEILAFNDRLEEFH 125
AP Q + ++ L+D GK +V F +CP + ++
Sbjct: 4 MKAPELQIQQWFNSA-TDLTLADLRGKVIVIEA----FQMLCPGCVMHGIPLAQKVRAAF 58
Query: 126 QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKI--PLLSDLTHKISL-----DYGVYL 178
+V + + F H + + L + +I P+ D ++ Y +
Sbjct: 59 P-EDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMPRTMAAYQM-- 115
Query: 179 SDQGHTLRGL---FIIDRNGVLRQI 200
RG +ID+ G LR
Sbjct: 116 -------RGTPSLLLIDKAGDLRAH 133
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 34.2 bits (79), Expect = 0.028
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 242 QVTEKTCDILEDHGV-TCELRGRTFIKGKGLI----TTYFI 277
V+ T +L+D R R + +F+
Sbjct: 152 NVSPTTYRLLKDCPGFVFTPRSREELPPNFPSEIPGICHFL 192
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding
protein; 1.80A {Saccharomyces cerevisiae} SCOP:
c.47.1.10 PDB: 2b7j_A
Length = 200
Score = 33.6 bits (77), Expect = 0.042
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 80 VDGQLKEIKLSDYYGKYLVFFFYPLDFTF---VCPTE---ILAFNDRLEEFHQINTEVVA 133
D E + GK+ + +F F+ +CP E + + + L + I + +
Sbjct: 27 EDMYGNEFTEKNLLGKFSIIYF---GFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLF 83
Query: 134 ASVD 137
+ D
Sbjct: 84 ITCD 87
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural
genomics consortium, SGC, protein binding; HET: M3L;
1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A 1n27_A
Length = 94
Score = 31.9 bits (72), Expect = 0.045
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 72 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 128
P W + + + KY +FFF + F+ P ++ ++ +++ + N
Sbjct: 20 PHWPARID---DIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGKPN 73
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 32.8 bits (75), Expect = 0.046
Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 27/135 (20%)
Query: 69 KPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRLEE 123
K + V+ G +I L GK + F+F P D +
Sbjct: 4 KKFFPYSTN-VLKGAAADIALPSLAGKTVFFYFSASWCPP------SRAFTPQLIDFYKA 56
Query: 124 FH-QINTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPLLSDLTHK--ISLDYGVYLSD 180
+ N EV+ S D + + + K L D ++ + V
Sbjct: 57 HAEKKNFEVMLISWDE--SAEDFKDYYAKMPWLA----LPFEDRKGMEFLTTGFDV---- 106
Query: 181 QGHTLRGLFIIDRNG 195
++ L ++ +
Sbjct: 107 --KSIPTLVGVEADS 119
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 33.0 bits (76), Expect = 0.046
Identities = 25/139 (17%), Positives = 42/139 (30%), Gaps = 33/139 (23%)
Query: 67 VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRL 121
++K P G + + E+ L GK + +F P C +
Sbjct: 4 LAKYLP---GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPP------CRGFTPVLAEFY 54
Query: 122 EEFHQ-INTEVVAASVDSHFTHLAWVNTPRKEGGLGKLKIPL-LSDLTHKISLDYGVYLS 179
E+ H N EVV S D + + K L +P ++ +GV
Sbjct: 55 EKHHVAKNFEVVLISWDE--NESDFHDYYGKMPWLA---LPFDQRSTVSELGKTFGV--- 106
Query: 180 DQGHTLRG---LFIIDRNG 195
L I+ +
Sbjct: 107 ------ESIPTLITINADT 119
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain,
heparin-binding, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Length = 110
Score = 32.4 bits (73), Expect = 0.048
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 72 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQIN 128
P W E + KY VFFF + F+ P ++ + + E+F + N
Sbjct: 34 PHWPARIDEM---PEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPN 87
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural
genomics, montreal-kingsto bacterial structural genomics
initiative, BSGI; 1.70A {Bacillus subtilis} SCOP:
c.47.1.10 PDB: 1on4_A
Length = 174
Score = 33.1 bits (76), Expect = 0.056
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 85 KEIKLSDYYGKYLVFFFYPLDFTF---VCPTEILAFNDRLEEFHQINTEVVAASV 136
K + L G+ + F FT +CP D ++ N +V S
Sbjct: 24 KNVSLESLKGEVWLADFI---FTNCETICPPMTAHMTDLQKKLKAENIDVRIISF 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.077
Identities = 48/320 (15%), Positives = 91/320 (28%), Gaps = 107/320 (33%)
Query: 1 MLRLMMTSGQIVDIVQTLED-----RVHHVLFKKP-----FYAKRAKNPYFPF------- 43
M + +++ +I I+ + + R+ L K + + + F
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 44 -CTQPS---------------SSIVFLKLFLHYFICFKLVSKPAPFWQGTAVVDGQLKEI 87
QPS + VF K VS+ P+ + + L E+
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYN---------VSRLQPYLK----LRQALLEL 147
Query: 88 KLSDY--------YGK-YLV------------FFF--YPLDFTFV-CPTEILAFNDRLEE 123
+ + GK ++ F + L+ P +L +L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-- 205
Query: 124 FHQINTEVVAASVDSHFTHLAWVNTP-RKEGGLGKLKIPLLSDLTHKISL---DYGVYLS 179
+QI+ + S D N R +L+ LL ++ L V
Sbjct: 206 LYQIDPNWTSRS-DHSS------NIKLRIHSIQAELRR-LLKSKPYENCLLVLL-NVQ-- 254
Query: 180 DQGH------------TLRGLFIIDR--NGVLRQITMNDLPVGRSVDETLRLVQAFHD-- 223
+ T R + D I+++ + + DE L+ + D
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 224 ----PLRTGAINGLSLLVIG 239
P N L +I
Sbjct: 315 PQDLPREVLTTNPRRLSIIA 334
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 32.1 bits (73), Expect = 0.097
Identities = 21/124 (16%), Positives = 39/124 (31%), Gaps = 24/124 (19%)
Query: 79 VVDGQLKEIKLSDYYGKYLVFFFY-----PLDFTFVCPTEILAFNDRLEEFHQ-INTEVV 132
+ Q + GK + F+F P C + E+ H N E++
Sbjct: 33 KLRKQADTADMDSLSGKTVFFYFSASWCPP------CRGFTPQLVEFYEKHHDSKNFEII 86
Query: 133 AASVDSHFTHLAWVNTPRKEGGLGKLKIP-LLSDLTHKISLDYGVYLSDQGHTLRGLFII 191
AS D + K L IP ++ ++ Y V ++ L +
Sbjct: 87 LASWDE--EEDDFNAYYAKMPWLS---IPFANRNIVEALTKKYSV------ESIPTLIGL 135
Query: 192 DRNG 195
+ +
Sbjct: 136 NADT 139
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel
followed by five-helix bundle; HET: DNA; 1.80A {Mus
musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Length = 147
Score = 32.1 bits (72), Expect = 0.11
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 72 PFWQGTAVVDGQLKEIKLSDYYGKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
+W A+V K G V +F F+ + +++A + F+
Sbjct: 26 SWW--PAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQHFNL 78
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold,
electron transfer protein, metal binding protein,
electron transport; NMR {Thermus thermophilus}
Length = 172
Score = 31.9 bits (73), Expect = 0.13
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 86 EIKLSDYYGKYLVFFFYPLDFTF---VCPTE---ILAFNDRLEEFHQINTEVVAASVD 137
++LS + K ++ FF FT VCPT + ++L Q +V+ SVD
Sbjct: 27 PVRLSQFQDKVVLLFF---GFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVD 81
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Length = 110
Score = 31.1 bits (70), Expect = 0.14
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 94 GKYLVFFFYPLDFTFVCPTEILAFNDRLEEFHQ 126
G + VFFF D+ +V + + + + F +
Sbjct: 47 GDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFAE 79
>3me7_A Putative uncharacterized protein; electron transfer protein,
electron transport, structural GE PSI-2, protein
structure initiative; 1.50A {Aquifex aeolicus} PDB:
3me8_A
Length = 170
Score = 31.6 bits (72), Expect = 0.15
Identities = 16/139 (11%), Positives = 38/139 (27%), Gaps = 38/139 (27%)
Query: 85 KEIKLSDYYGKYLVFFFYPLDFTF---VCPTEILAFNDRLEEFHQINTEV--VAASVDSH 139
E +L + GK ++ +T CP + + + + + + D
Sbjct: 19 NEFQLKNLKGKPIILSPI---YTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFD-- 73
Query: 140 FTHLAWVNTPR----------KEGGLGKLKIPLL----SDLTHKISLDYGVYLSDQG--- 182
P+ KE G+ ++ S+ K+ G
Sbjct: 74 ---------PKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDF 124
Query: 183 -HTLRGLFIIDRNGVLRQI 200
H + ++ ++
Sbjct: 125 IHPN-VVVVLSPELQIKDY 142
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 31.1 bits (70), Expect = 0.37
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 242 QVTEKTCDILEDH----GVTCELRGRTFIKG-KGLITTYFIR 278
V + + L D G G ++G +G + + +R
Sbjct: 334 LVADSVREALGDAPEADGFQWSFAGPRRLRGIRGDVRLFRVR 375
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold,
metallophosphodiesterase, active site mutan nucleotide
polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB:
3rl3_A* 3rl4_A*
Length = 296
Score = 30.7 bits (68), Expect = 0.54
Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 13/168 (7%)
Query: 42 PFCTQPSSSIVFLKLFLHYFICFKL-VSKPAPFWQGTAVVDGQLKEIKLSDYYGKYLVFF 100
+ + P+ + + F + + P P+ T G + + +SD +
Sbjct: 19 EYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPY--DTPKPAGHTRFVCISDTRSRTDGIQ 76
Query: 101 FYPLDFTFVC--------PTEILAFNDRLEEFHQINTEVVAASVDSHFTHLAWVNTPRKE 152
D P+E+ FND L V+A + + F + +++
Sbjct: 77 MPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHELTFDKEFMADLVKQD 136
Query: 153 GGLGKLKIPLLSDLTHKI--SLDYGVYLSDQGHTLRGLFIIDRNGVLR 198
L + + L +YL D T++G I
Sbjct: 137 YYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWTPW 184
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding
protein, mitochondrial assembly factor, redox, nickel,
disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP:
c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A
2hrf_A 2hrn_A 1wp0_A
Length = 164
Score = 30.0 bits (68), Expect = 0.64
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 10/65 (15%)
Query: 80 VDGQLKEIKLSDYYGKYLVFFFYPLDFTF---VCPTEI----LAFNDRLEEFHQINTEVV 132
+ DY G++L+ +F FT VCP E+ ++ + +
Sbjct: 9 TTHTGERKTDKDYLGQWLLIYF---GFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPL 65
Query: 133 AASVD 137
S+D
Sbjct: 66 FISID 70
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin
fold, metal transport, structural genomics,
spine2-complexes; NMR {Homo sapiens}
Length = 171
Score = 29.6 bits (67), Expect = 0.74
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 80 VDGQLKEIKLSDYYGKYLVFFFYPLDFTF---VCPTE---ILAFNDRLE-EFHQINTEVV 132
+D + + +D+ G++++ +F FT +CP E ++ +LE E + V
Sbjct: 12 LDHRGRARCKADFRGQWVLMYF---GFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPV 68
Query: 133 AASVD 137
+VD
Sbjct: 69 FITVD 73
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP,
chromatin, beta-barrel; NMR {Schizosaccharomyces pombe}
SCOP: b.34.9.2
Length = 109
Score = 27.3 bits (60), Expect = 3.1
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 72 PFWQGTAVVDGQLKEIKLSDYYGK----YLVFFFYPLDFTFVCPTEILAFND 119
P+W V + ++ + + Y V FF ++ + +
Sbjct: 21 PWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTS 72
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide
exchange, cell inner membrane, CYT C-type biogenesis,
disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB:
3kh9_A
Length = 176
Score = 27.6 bits (62), Expect = 3.7
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 12/39 (30%)
Query: 163 LSDLTHKISLDYGVYLSDQGHTLRGL---FIIDRNGVLR 198
+SD + LD GVY G ++ID+ G++R
Sbjct: 117 ISDADGTLGLDLGVY---------GAPETYLIDKQGIIR 146
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold,
cytochrome C maturation, atomic resolution
oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP:
c.47.1.10
Length = 156
Score = 27.2 bits (61), Expect = 3.8
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 12/39 (30%)
Query: 163 LSDLTHKISLDYGVYLSDQGHTLRGL---FIIDRNGVLR 198
D + S+++GVY G+ F++ R G +
Sbjct: 102 GVDANGRASIEWGVY---------GVPETFVVGREGTIV 131
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded
by NI protein structure initiative, PSI; 2.30A
{Streptococcus pyogenes} SCOP: d.224.1.2
Length = 159
Score = 27.4 bits (61), Expect = 4.1
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 202 MNDLPVGRSVDETLRLVQAFHDPLR 226
M D +G+S +E L L F + ++
Sbjct: 75 MTDAVIGKSKEEALALADIFSEMVQ 99
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur,
zinc, northeast structural genomics consortium, NESG;
NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Length = 147
Score = 27.4 bits (61), Expect = 4.1
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 202 MNDLPVGRSVDETLRLVQAFHDPLR 226
M G+ ++ L + + F D ++
Sbjct: 76 MTQAIKGKDIETALSMSKIFSDMMQ 100
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 27.3 bits (61), Expect = 4.6
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 12/39 (30%)
Query: 163 LSDLTHKISLDYGVYLSDQGHTLRGL---FIIDRNGVLR 198
L D + LD GVY G F+ID NG++R
Sbjct: 110 LFDGDGMLGLDLGVY---------GAPETFLIDGNGIIR 139
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding,
iron-sulfur cluster binding, three conserved Cys, three
beta strands; 1.85A {Thermus thermophilus}
Length = 138
Score = 26.6 bits (59), Expect = 6.6
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 202 MNDLPVGRSVDETLRLVQAFHDPLRTG 228
M + G+ V E L L + F + G
Sbjct: 74 MTEAVKGKKVAEALELSRKFQAMVVEG 100
>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A
{Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21
Length = 763
Score = 27.0 bits (59), Expect = 8.3
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 196 VLRQITMNDLPVGRSVDETLRLVQAFHDPLRTGAINGLSLLVIGLFQVTEKTCDILEDHG 255
++LP + T ++ AF+ L T G+ L+ + G
Sbjct: 95 AFEYAKNSNLPQIEAEMTTENIISAFYYLLCTRRKTGMILV------------EHWVSEG 142
Query: 256 VTCELRGRTFIKGKGLIT 273
+ F K L T
Sbjct: 143 LLPLDNHYHFFNDKSLAT 160
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.143 0.434
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,699,398
Number of extensions: 282779
Number of successful extensions: 842
Number of sequences better than 10.0: 1
Number of HSP's gapped: 728
Number of HSP's successfully gapped: 108
Length of query: 299
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 206
Effective length of database: 4,105,140
Effective search space: 845658840
Effective search space used: 845658840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.8 bits)