BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16152
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1F75|A Chain A, Crystal Structure Of Undecaprenyl Diphosphate Synthase
           From Micrococcus Luteus B-P 26
 pdb|1F75|B Chain B, Crystal Structure Of Undecaprenyl Diphosphate Synthase
           From Micrococcus Luteus B-P 26
          Length = 249

 Score =  150 bits (379), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 131/229 (57%), Gaps = 3/229 (1%)

Query: 20  LKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFS 79
           +    +PKHIA IMDGN R+AK+     I+GH +G   + +  ++  DLGV+ +T+YAFS
Sbjct: 15  INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFS 74

Query: 80  IENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAM 139
            EN+ R ++EVN LM L        + E   L EK +++  IG I+ LP     +  EA 
Sbjct: 75  TENWSRPKDEVNYLMKLPGDFLNTFLPE---LIEKNVKVETIGFIDDLPDHTKKAVLEAK 131

Query: 140 HITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPE 199
             TK NT   L  A +Y  R E++   +++ +  ++ +I+ ++++   F++ L+T   P+
Sbjct: 132 EKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYLFTANMPD 191

Query: 200 PDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
           P+L+IRTSGE RLS+F++ Q   S   F  + WP+F   +L   +  +Q
Sbjct: 192 PELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQ 240


>pdb|4H8E|A Chain A, Structure Of S. Aureus Undecaprenyl Diphosphate Synthase
           In Complex With Fpp And Sulfate
          Length = 256

 Score =  144 bits (363), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 3/229 (1%)

Query: 20  LKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFS 79
           L   ++P+HIA IMDGN R+AK+     I+GH +G   + +  +   D+GV+ +T+YAFS
Sbjct: 19  LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFS 78

Query: 80  IENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAM 139
            EN+ R E EVN +M+L     K  + E   L EK +++  IG  + LP   I +   A 
Sbjct: 79  TENWSRPESEVNYIMNLPVNFLKTFLPE---LIEKNVKVETIGFTDKLPKSTIEAINNAK 135

Query: 140 HITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPE 199
             T +NT   L  A +Y  R E+V + + + D L    + ++ +     +  L T   P+
Sbjct: 136 EKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPD 195

Query: 200 PDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
           P+L+IRTSGE R+S+F++ Q   S   F  KLWP+F    LI  +  +Q
Sbjct: 196 PELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQ 244


>pdb|2VFW|A Chain A, Rv1086 Native
 pdb|2VFW|B Chain B, Rv1086 Native
 pdb|2VG0|A Chain A, Rv1086 Citronelly Pyrophosphate Complex
 pdb|2VG0|B Chain B, Rv1086 Citronelly Pyrophosphate Complex
          Length = 227

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 10/225 (4%)

Query: 25  VPKHIAFIMDGNRRYAKRSNAKTIE-GHSKGFDKLAETLQWCLDLGVREVTVYAFSIENF 83
           +P+HIA + DGNRR+A+ +    +  G+  G  K+AE L+WC + G+   TVY  S EN 
Sbjct: 2   LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENL 61

Query: 84  KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITK 143
           +R  +E+  L+++     + +    +  +     +R +G++ L+  +     + A+  T 
Sbjct: 62  QRDPDELAALIEIITDVVEEICAPANHWS-----VRTVGDLGLIGEEPARRLRGAVESTP 116

Query: 144 DNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNED----VTMDLFDKCLYTGTSPE 199
           +     +NVA  Y  R E+V+  R L+     N  T E+    VT++   + LYT   P+
Sbjct: 117 EVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPD 176

Query: 200 PDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAV 244
           PDL+IRTSGE RLS F+L QS  S ++F    WP F   + + A+
Sbjct: 177 PDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRAL 221


>pdb|2VG1|A Chain A, Rv1086 E,E-Farnesyl Diphosphate Complex
 pdb|2VG1|B Chain B, Rv1086 E,E-Farnesyl Diphosphate Complex
          Length = 228

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 10/225 (4%)

Query: 25  VPKHIAFIMDGNRRYAKRSNAKTIE-GHSKGFDKLAETLQWCLDLGVREVTVYAFSIENF 83
           +P+HIA + DGNRR+A+ +    +  G+  G  K+AE L+WC + G+   TVY  S EN 
Sbjct: 3   LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENL 62

Query: 84  KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITK 143
           +R  +E+  L+++     + +    +  +     +R +G++ L+  +     + A+  T 
Sbjct: 63  QRDPDELAALIEIITDVVEEICAPANHWS-----VRTVGDLGLIGEEPARRLRGAVESTP 117

Query: 144 DNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNED----VTMDLFDKCLYTGTSPE 199
           +     +NVA  Y  R E+V+  R L+     N  T E+    VT++   + LYT   P+
Sbjct: 118 EVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPD 177

Query: 200 PDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAV 244
           PDL+IRTSGE RLS F+L QS  S ++F    WP F   + + A+
Sbjct: 178 PDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRAL 222


>pdb|2D2R|A Chain A, Crystal Structure Of Helicobacter Pylori Undecaprenyl
           Pyrophosphate Synthase
 pdb|2D2R|B Chain B, Crystal Structure Of Helicobacter Pylori Undecaprenyl
           Pyrophosphate Synthase
 pdb|2DTN|A Chain A, Crystal Structure Of Helicobacter Pylori Undecaprenyl
           Pyrophosphate Synthase Complexed With Pyrophosphate
 pdb|2DTN|B Chain B, Crystal Structure Of Helicobacter Pylori Undecaprenyl
           Pyrophosphate Synthase Complexed With Pyrophosphate
          Length = 245

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 125/226 (55%), Gaps = 8/226 (3%)

Query: 27  KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRT 86
           KH+A IMDGN R+AK  N     GH KG   L +   WC +  +  +T+YAFS EN+KR 
Sbjct: 17  KHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRP 76

Query: 87  EEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNT 146
           + EV+ LM + +   K L +E+    +  IR R IG++E    +L  +  +  + T+   
Sbjct: 77  KSEVDFLMKMLK---KYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFK 133

Query: 147 EGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRT 206
           +    +A +Y S++E+    + L++   +N    E +  ++ ++ L T   PE DL++RT
Sbjct: 134 DFTQVLALNYGSKNELSRAFKSLLESPPSNISLLESLENEISNR-LDTRNLPEVDLLLRT 192

Query: 207 SGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFY 252
            GE RLS+F+L QS  + L+F   LWP+FT  +L N +     DFY
Sbjct: 193 GGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENII----SDFY 234


>pdb|1UEH|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
           With Triton X- 100, Magnesium And Sulfate
 pdb|1UEH|B Chain B, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
           With Triton X- 100, Magnesium And Sulfate
 pdb|1V7U|A Chain A, Crystal Structure Of Undecaprenyl Pyrophosphate Synthase
           With Farnesyl Pyrophosphate
 pdb|1V7U|B Chain B, Crystal Structure Of Undecaprenyl Pyrophosphate Synthase
           With Farnesyl Pyrophosphate
 pdb|1X06|A Chain A, Crystal Structure Of Undecaprenyl Pyrophosphate Synthase
           In Complex With Mg, Ipp And Fspp
 pdb|1X07|A Chain A, Crystal Structure Of Undecaprenyl Pyrophosphate Synthase
           In Complex With Mg And Ipp
 pdb|2E98|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
           With Bph-629
 pdb|2E98|B Chain B, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
           With Bph-629
 pdb|2E99|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
           With Bph-608
 pdb|2E99|B Chain B, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
           With Bph-608
 pdb|2E9A|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
           With Bph-628
 pdb|2E9A|B Chain B, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
           With Bph-628
 pdb|2E9C|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
           With Bph-675
 pdb|2E9C|B Chain B, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
           With Bph-675
 pdb|2E9D|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
           With Bph-676
 pdb|2E9D|B Chain B, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
           With Bph-676
 pdb|3QAS|B Chain B, Structure Of Undecaprenyl Diphosphate Synthase
 pdb|3QAS|A Chain A, Structure Of Undecaprenyl Diphosphate Synthase
 pdb|3TH8|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase
           Complexed With Bph-1063
 pdb|3TH8|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase
           Complexed With Bph-1063
 pdb|3SGT|B Chain B, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
           Synthase In Complex With Bph-1299
 pdb|3SGT|A Chain A, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
           Synthase In Complex With Bph-1299
 pdb|3SGV|B Chain B, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
           Synthase In Complex With Bph-1290
 pdb|3SGV|A Chain A, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
           Synthase In Complex With Bph-1290
 pdb|3SGX|A Chain A, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
           Synthase In Complex With Bph-1100
 pdb|3SGX|B Chain B, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
           Synthase In Complex With Bph-1100
 pdb|3SH0|B Chain B, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
           Synthase In Complex With Bph-1065
 pdb|3SH0|A Chain A, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
           Synthase In Complex With Bph-1065
 pdb|4H2J|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
           Complex With Bph-1354
 pdb|4H2J|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
           Complex With Bph-1354
 pdb|4H2M|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
           Complex With Bph-1408
 pdb|4H2M|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
           Complex With Bph-1408
 pdb|4H2O|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
           Complex With Bph-1248
 pdb|4H2O|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
           Complex With Bph-1248
 pdb|4H38|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
           Complex With Bph-1297
 pdb|4H38|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
           Complex With Bph-1297
 pdb|4H3A|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
           Complex With Bph-1330
 pdb|4H3A|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
           Complex With Bph-1330
 pdb|4H3C|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
           Complex With Bph-987
 pdb|4H3C|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
           Complex With Bph-987
          Length = 253

 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 3/224 (1%)

Query: 24  HVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENF 83
           H  +H+A IMDGN R+AK+       GH  G   +   + +  + G+  +T+YAFS EN+
Sbjct: 16  HGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENW 75

Query: 84  KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITK 143
            R  +EV+ LM+L       L  E   L+   +R+RIIG+     S L    +++  +T 
Sbjct: 76  NRPAQEVSALMELF---VWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTA 132

Query: 144 DNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLI 203
            NT   LN+A +Y  R ++V+  R L + ++   +  + +  ++ ++ +        DL+
Sbjct: 133 GNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLV 192

Query: 204 IRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAF 247
           IRT GE R+S+F+L Q   + LYF   LWP+F   +   A+ AF
Sbjct: 193 IRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAF 236


>pdb|1X08|A Chain A, Crystal Structure Of D26a Mutant Upps In Complex With Mg,
           Ipp And Fspp
 pdb|1X09|A Chain A, Crystal Structure Of The D26a Mutant Upps In Complex With
           Magnesium And Isopentenyl Pyrophosphate
          Length = 253

 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 3/224 (1%)

Query: 24  HVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENF 83
           H  +H+A IM GN R+AK+       GH  G   +   + +  + G+  +T+YAFS EN+
Sbjct: 16  HGCRHVAIIMAGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENW 75

Query: 84  KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITK 143
            R  +EV+ LM+L       L  E   L+   +R+RIIG+     S L    +++  +T 
Sbjct: 76  NRPAQEVSALMELF---VWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTA 132

Query: 144 DNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLI 203
            NT   LN+A +Y  R ++V+  R L + ++   +  + +  ++ ++ +        DL+
Sbjct: 133 GNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLV 192

Query: 204 IRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAF 247
           IRT GE R+S+F+L Q   + LYF   LWP+F   +   A+ AF
Sbjct: 193 IRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAF 236


>pdb|2VG2|A Chain A, Rv2361 With Ipp
 pdb|2VG2|B Chain B, Rv2361 With Ipp
 pdb|2VG2|C Chain C, Rv2361 With Ipp
 pdb|2VG2|D Chain D, Rv2361 With Ipp
 pdb|2VG4|A Chain A, Rv2361 Native
 pdb|2VG4|B Chain B, Rv2361 Native
 pdb|2VG4|C Chain C, Rv2361 Native
 pdb|2VG4|D Chain D, Rv2361 Native
 pdb|2VG3|A Chain A, Rv2361 With Citronellyl Pyrophosphate
 pdb|2VG3|B Chain B, Rv2361 With Citronellyl Pyrophosphate
 pdb|2VG3|C Chain C, Rv2361 With Citronellyl Pyrophosphate
 pdb|2VG3|D Chain D, Rv2361 With Citronellyl Pyrophosphate
          Length = 284

 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 113/221 (51%), Gaps = 3/221 (1%)

Query: 15  AIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVT 74
           A    +    +P H+A +MDGN R+A +      EGH  G   + +     ++LG++ ++
Sbjct: 45  AAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLS 104

Query: 75  VYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIAS 134
           +YAFS EN+KR+ EEV  LM   R   +R  +   KL   G+RIR +G+   L   +I  
Sbjct: 105 LYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKL---GVRIRWVGSRPRLWRSVINE 161

Query: 135 FKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYT 194
              A  +TK N    +N   +Y  R E+ E +R +   +   ++  E +T     + L  
Sbjct: 162 LAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQR 221

Query: 195 GTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEF 235
              P+ DL +RTSGE R S+FML Q+  +   F  KLWP++
Sbjct: 222 PDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDY 262


>pdb|1JP3|A Chain A, Structure Of E.Coli Undecaprenyl Pyrophosphate Synthase
 pdb|1JP3|B Chain B, Structure Of E.Coli Undecaprenyl Pyrophosphate Synthase
          Length = 253

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 3/224 (1%)

Query: 24  HVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENF 83
           H  +H+A I DGN R+AK+       GH  G   +   + +  + G+  +T+YAFS EN+
Sbjct: 16  HGCRHVAIIXDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENW 75

Query: 84  KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITK 143
            R  +EV+ L +L       L  E   L+   +R+RIIG+     S L    +++  +T 
Sbjct: 76  NRPAQEVSALXELF---VWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTA 132

Query: 144 DNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLI 203
            NT   LN+A +Y  R ++V+  R L + ++   +  + +  +  ++ +        DL+
Sbjct: 133 GNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEXLNQHVCXHELAPVDLV 192

Query: 204 IRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAF 247
           IRT GE R+S+F+L Q   + LYF   LWP+F   +   A+ AF
Sbjct: 193 IRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAF 236


>pdb|3UGS|B Chain B, Crystal Structure Of A Probable Undecaprenyl Diphosphate
           Synthase (Upps) From Campylobacter Jejuni
 pdb|3UGS|A Chain A, Crystal Structure Of A Probable Undecaprenyl Diphosphate
           Synthase (Upps) From Campylobacter Jejuni
          Length = 225

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/211 (27%), Positives = 114/211 (54%), Gaps = 14/211 (6%)

Query: 27  KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRT 86
           KH+A +MDGNRR+A+        G+S+G   + + ++ C++  +  ++++AFS EN+KR 
Sbjct: 8   KHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRP 67

Query: 87  EEEVNGLMDLARAKFKRLIEEK-DKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDN 145
           ++E++ + +L      R ++E  +K  +  +R+R IG++  L   +          TK  
Sbjct: 68  KDEIDFIFEL----LDRCLDEALEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHC 123

Query: 146 TEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIR 205
               +N+A SY +RDE++  ++ +I+  +  ++  E++T +L           + DL++R
Sbjct: 124 DALCVNLAISYGARDEIIRAAKRVIE--KKLELNEENLTQNL-------DLPLDVDLMLR 174

Query: 206 TSGETRLSDFMLVQSKSSFLYFCHKLWPEFT 236
                RLS+F+L Q   + +YF   L+P  T
Sbjct: 175 VGNAKRLSNFLLWQCSYAEIYFSETLFPSLT 205


>pdb|2B51|A Chain A, Structural Basis For Utp Specificity Of Rna Editing
           Tutases From Trypanosoma Brucei
 pdb|2B56|A Chain A, Structural Basis For Utp Specificity Of Rna Editing
           Tutases From Trypanosoma Brucei
          Length = 468

 Score = 33.9 bits (76), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 7/99 (7%)

Query: 96  LARAKFKRLIEEKDKLNEKG---IRIRIIGN--IELLPSDLIASFKEAMHITKDNTEGFL 150
           +ARA++  L EE+D+        +R + +G+  +E +   +     E + +  D T    
Sbjct: 139 VARARYTPLSEEEDRKARTALLDVRNQCVGDNDVEYIAEKMGRDNVEGIRV--DRTTYGC 196

Query: 151 NVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFD 189
            +A   TS+++M+E      DG    +   ED T D+ D
Sbjct: 197 RIAIQCTSKEQMIEAIGFFPDGKIMTRGMREDYTRDVLD 235


>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
           With Ribonuclease I
 pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
           With Ribonuclease I
 pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
           Human Ribonuclease Inhibitor Complexed With Ribonuclease
           I
 pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
           Human Ribonuclease Inhibitor Complexed With Ribonuclease
           I
          Length = 461

 Score = 32.3 bits (72), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 97  ARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSY 156
           A+  FK L    + +NE G+R+   G ++  P  L A   E+  +T DN      +  S 
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQG-LKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226

Query: 157 TSRDEMVETSRILID 171
            S  E+   S  L D
Sbjct: 227 ASLRELALGSNKLGD 241


>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
 pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
 pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
           Complex With Human Eosinophil Derived Neurotoxin At 2a
           Resolution
 pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
           Complex With Human Eosinophil Derived Neurotoxin At 2a
           Resolution
          Length = 460

 Score = 32.3 bits (72), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 97  ARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSY 156
           A+  FK L    + +NE G+R+   G ++  P  L A   E+  +T DN      +  S 
Sbjct: 167 AKPDFKELTVSNNDINEAGVRVLCQG-LKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 225

Query: 157 TSRDEMVETSRILID 171
            S  E+   S  L D
Sbjct: 226 ASLRELALGSNKLGD 240


>pdb|2B4V|A Chain A, Structural Basis For Utp Specificity Of Rna Editing
           Tutases From Trypanosoma Brucei
          Length = 468

 Score = 30.8 bits (68), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 7/99 (7%)

Query: 96  LARAKFKRLIEEKDKLNEKG---IRIRIIGN--IELLPSDLIASFKEAMHITKDNTEGFL 150
           +ARA++  L EE+D+        +R + +G+  +E +         E + +  D T    
Sbjct: 139 VARARYTPLSEEEDRKARTALLDVRNQCVGDNDVEYIAEKXGRDNVEGIRV--DRTTYGC 196

Query: 151 NVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFD 189
            +A   TS+++ +E      DG    +   ED T D+ D
Sbjct: 197 RIAIQCTSKEQXIEAIGFFPDGKIXTRGXREDYTRDVLD 235


>pdb|2HH7|A Chain A, Crystal Structure Of Cu(I) Bound Csor From Mycobacterium
          Tuberculosis
          Length = 119

 Score = 28.1 bits (61), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 37 RRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKR 85
          ++ A  +  KT+ GH  G  ++ E+  +C+D+ +++++    S+E   R
Sbjct: 8  KKRAALNRLKTVRGHLDGIVRMLESDAYCVDV-MKQISAVQSSLERANR 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,586,683
Number of Sequences: 62578
Number of extensions: 343505
Number of successful extensions: 911
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 886
Number of HSP's gapped (non-prelim): 15
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)