Query psy16152
Match_columns 295
No_of_seqs 124 out of 1045
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 22:10:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14832 undecaprenyl pyrophos 100.0 1.9E-84 4E-89 590.8 27.7 238 19-259 12-249 (253)
2 PRK14837 undecaprenyl pyrophos 100.0 2.7E-84 5.8E-89 582.0 27.4 228 22-256 3-230 (230)
3 PRK14842 undecaprenyl pyrophos 100.0 3.7E-84 8E-89 585.6 28.3 234 21-257 4-238 (241)
4 PRK14831 undecaprenyl pyrophos 100.0 2E-84 4.3E-89 591.1 26.4 244 11-257 6-249 (249)
5 PRK14840 undecaprenyl pyrophos 100.0 6.1E-84 1.3E-88 586.5 28.4 241 13-256 6-250 (250)
6 TIGR00055 uppS undecaprenyl di 100.0 5.3E-84 1.1E-88 579.6 27.1 226 27-255 1-226 (226)
7 PRK14836 undecaprenyl pyrophos 100.0 3.4E-84 7.4E-89 590.4 26.2 241 17-260 6-246 (253)
8 PRK14835 undecaprenyl pyrophos 100.0 1.1E-83 2.3E-88 592.6 29.3 252 4-256 20-275 (275)
9 PRK14828 undecaprenyl pyrophos 100.0 1.5E-83 3.3E-88 587.4 30.1 249 2-256 3-256 (256)
10 PRK14829 undecaprenyl pyrophos 100.0 6.3E-84 1.4E-88 586.3 27.0 236 19-257 8-243 (243)
11 PRK14838 undecaprenyl pyrophos 100.0 1.4E-83 3E-88 582.6 27.7 233 20-257 5-237 (242)
12 PRK14834 undecaprenyl pyrophos 100.0 4.4E-83 9.6E-88 581.5 28.0 239 19-260 8-246 (249)
13 PRK14830 undecaprenyl pyrophos 100.0 7.1E-83 1.5E-87 581.5 28.0 237 18-257 15-251 (251)
14 PRK14841 undecaprenyl pyrophos 100.0 9.1E-83 2E-87 574.8 27.8 229 24-257 2-230 (233)
15 PRK14833 undecaprenyl pyrophos 100.0 1E-82 2.3E-87 574.4 27.5 232 23-258 2-233 (233)
16 PRK14827 undecaprenyl pyrophos 100.0 8.8E-83 1.9E-87 590.3 27.4 241 14-257 56-296 (296)
17 PRK14839 undecaprenyl pyrophos 100.0 1.9E-81 4.2E-86 565.4 26.2 224 24-259 8-231 (239)
18 cd00475 CIS_IPPS Cis (Z)-Isopr 100.0 3.2E-80 7E-85 554.9 26.7 221 26-249 1-221 (221)
19 PTZ00349 dehydrodolichyl dipho 100.0 3.7E-79 8E-84 568.2 28.9 241 9-249 3-306 (322)
20 COG0020 UppS Undecaprenyl pyro 100.0 3.5E-79 7.7E-84 554.3 26.3 231 24-257 15-245 (245)
21 KOG1602|consensus 100.0 1.3E-78 2.9E-83 543.5 26.4 253 3-258 16-268 (271)
22 PRK10240 undecaprenyl pyrophos 100.0 2.1E-78 4.5E-83 545.2 26.2 225 33-260 1-225 (229)
23 PF01255 Prenyltransf: Putativ 100.0 1.9E-77 4E-82 539.5 23.0 223 32-256 1-223 (223)
24 KOG2818|consensus 99.9 1.4E-24 3E-29 195.9 11.2 202 21-256 60-263 (263)
25 PF13788 DUF4180: Domain of un 72.0 49 0.0011 27.0 9.3 63 53-127 19-81 (113)
26 TIGR00674 dapA dihydrodipicoli 69.0 58 0.0013 30.1 10.5 106 53-173 16-123 (285)
27 PF02739 5_3_exonuc_N: 5'-3' e 61.3 36 0.00079 29.3 7.1 66 25-100 50-120 (169)
28 PRK03170 dihydrodipicolinate s 61.2 82 0.0018 29.1 10.0 106 53-173 19-126 (292)
29 cd00408 DHDPS-like Dihydrodipi 61.0 98 0.0021 28.3 10.4 48 53-100 15-62 (281)
30 TIGR03249 KdgD 5-dehydro-4-deo 59.5 1.5E+02 0.0033 27.6 11.5 123 53-191 23-151 (296)
31 cd03770 SR_TndX_transposase Se 58.0 77 0.0017 26.0 8.3 70 57-142 23-95 (140)
32 cd00008 53EXOc 5'-3' exonuclea 56.5 19 0.00042 32.7 4.8 51 25-75 49-104 (240)
33 PRK09482 flap endonuclease-lik 55.6 19 0.00042 33.4 4.6 73 15-99 37-117 (256)
34 TIGR02313 HpaI-NOT-DapA 2,4-di 54.0 1.5E+02 0.0033 27.6 10.5 47 53-99 18-64 (294)
35 cd00952 CHBPH_aldolase Trans-o 53.7 1.3E+02 0.0028 28.3 10.0 106 53-173 26-133 (309)
36 PF00701 DHDPS: Dihydrodipicol 53.5 1.8E+02 0.004 26.7 12.4 104 53-172 19-125 (289)
37 PRK09856 fructoselysine 3-epim 53.1 1.7E+02 0.0037 26.3 12.0 64 51-121 85-148 (275)
38 PF03851 UvdE: UV-endonuclease 51.8 2E+02 0.0043 27.0 10.7 104 52-162 41-162 (275)
39 PLN02417 dihydrodipicolinate s 45.7 2.5E+02 0.0054 25.9 11.9 47 53-99 19-65 (280)
40 PF07736 CM_1: Chorismate muta 45.5 25 0.00053 28.9 3.2 32 153-184 9-41 (118)
41 PRK02551 flavoprotein NrdI; Pr 43.4 1.6E+02 0.0035 25.1 8.1 56 28-102 96-151 (154)
42 PF01261 AP_endonuc_2: Xylose 42.8 1.9E+02 0.0042 24.1 8.7 69 51-124 66-134 (213)
43 PF03147 FDX-ACB: Ferredoxin-f 42.4 1.5E+02 0.0033 22.6 7.9 62 25-102 6-86 (94)
44 cd00953 KDG_aldolase KDG (2-ke 40.4 3E+02 0.0065 25.4 10.6 101 53-171 17-120 (279)
45 COG1022 FAA1 Long-chain acyl-C 40.3 1.4E+02 0.0031 31.2 8.6 47 23-94 65-113 (613)
46 PRK13210 putative L-xylulose 5 40.0 2.8E+02 0.0061 24.9 11.4 65 51-122 89-153 (284)
47 TIGR00683 nanA N-acetylneurami 39.9 3.1E+02 0.0068 25.4 10.8 105 53-172 18-125 (290)
48 PF01661 Macro: Macro domain; 38.8 90 0.0019 24.0 5.5 42 53-94 77-118 (118)
49 PRK05707 DNA polymerase III su 37.5 3E+02 0.0065 26.2 9.8 55 113-171 104-158 (328)
50 PRK14976 5'-3' exonuclease; Pr 37.4 59 0.0013 30.4 4.9 59 16-75 46-109 (281)
51 cd00951 KDGDH 5-dehydro-4-deox 37.4 3.4E+02 0.0073 25.1 10.7 104 53-172 18-123 (289)
52 cd00950 DHDPS Dihydrodipicolin 37.4 3.3E+02 0.0071 24.9 11.9 105 53-172 18-124 (284)
53 PF02472 ExbD: Biopolymer tran 36.7 1.1E+02 0.0025 24.1 5.9 47 13-75 79-125 (130)
54 smart00857 Resolvase Resolvase 35.8 1E+02 0.0022 24.9 5.6 71 37-123 25-103 (148)
55 cd00019 AP2Ec AP endonuclease 35.7 3.3E+02 0.0072 24.6 10.8 65 50-122 79-143 (279)
56 KOG4388|consensus 35.6 1.7E+02 0.0036 30.9 7.9 58 61-125 419-478 (880)
57 PF06368 Met_asp_mut_E: Methyl 34.9 97 0.0021 31.0 6.0 75 54-134 186-263 (441)
58 PRK13745 anaerobic sulfatase-m 34.7 4.3E+02 0.0092 25.8 10.6 95 53-167 48-143 (412)
59 PLN03044 GTP cyclohydrolase I; 34.1 39 0.00085 29.9 2.9 27 27-67 87-113 (188)
60 TIGR00593 pola DNA polymerase 33.9 1.6E+02 0.0035 32.2 8.1 73 16-99 40-117 (887)
61 COG1856 Uncharacterized homolo 33.7 2E+02 0.0043 26.6 7.4 103 53-169 95-214 (275)
62 smart00281 LamB Laminin B doma 33.5 58 0.0013 26.6 3.7 55 198-253 41-105 (127)
63 TIGR00063 folE GTP cyclohydrol 33.5 35 0.00077 30.0 2.5 26 27-67 82-107 (180)
64 smart00549 TAFH TAF homology. 33.0 18 0.0004 28.3 0.6 32 155-186 17-48 (92)
65 TIGR00629 uvde UV damage endon 32.9 4.5E+02 0.0097 25.2 12.4 107 53-165 49-174 (312)
66 PF08002 DUF1697: Protein of u 32.3 66 0.0014 26.8 3.9 35 56-91 19-57 (137)
67 smart00729 Elp3 Elongator prot 31.9 1.9E+02 0.0041 23.9 6.9 27 54-80 165-191 (216)
68 COG0302 FolE GTP cyclohydrolas 31.9 39 0.00084 30.1 2.5 25 27-66 96-120 (195)
69 PRK04147 N-acetylneuraminate l 31.6 4.2E+02 0.0091 24.5 12.7 48 53-100 21-69 (293)
70 TIGR01503 MthylAspMut_E methyl 31.1 1.5E+02 0.0033 30.0 6.8 76 53-134 224-302 (480)
71 smart00475 53EXOc 5'-3' exonuc 31.1 64 0.0014 29.8 4.0 51 25-75 48-103 (259)
72 COG0329 DapA Dihydrodipicolina 30.9 1.3E+02 0.0028 28.4 6.0 48 53-100 22-69 (299)
73 PRK09347 folE GTP cyclohydrola 30.8 46 0.00099 29.5 2.8 27 27-68 90-116 (188)
74 TIGR00538 hemN oxygen-independ 30.8 4.3E+02 0.0094 26.2 10.1 28 53-80 215-242 (455)
75 cd00642 GTP_cyclohydro1 GTP cy 30.7 39 0.00086 29.8 2.4 26 27-67 87-112 (185)
76 PRK13505 formate--tetrahydrofo 29.9 5.4E+02 0.012 26.7 10.6 126 23-174 320-457 (557)
77 cd00954 NAL N-Acetylneuraminic 28.7 4.7E+02 0.01 24.1 12.9 106 53-173 18-126 (288)
78 cd02905 Macro_GDAP2_like Macro 28.5 1.4E+02 0.003 24.8 5.3 40 55-94 93-132 (140)
79 cd07947 DRE_TIM_Re_CS Clostrid 28.1 4.6E+02 0.0099 24.4 9.2 50 63-122 81-135 (279)
80 PF13302 Acetyltransf_3: Acety 28.1 1.4E+02 0.0031 23.2 5.1 32 49-80 96-128 (142)
81 PRK03620 5-dehydro-4-deoxygluc 28.0 5E+02 0.011 24.2 11.0 47 53-99 25-71 (303)
82 TIGR01796 CM_mono_aroH monofun 27.7 49 0.0011 27.1 2.2 30 154-183 10-40 (117)
83 PF01227 GTP_cyclohydroI: GTP 27.1 46 0.001 29.3 2.1 27 27-68 82-108 (179)
84 cd02185 AroH Chorismate mutase 27.0 51 0.0011 27.0 2.2 31 154-184 10-41 (117)
85 cd00477 FTHFS Formyltetrahydro 26.6 5.9E+02 0.013 26.2 10.1 106 46-173 333-439 (524)
86 cd03770 SR_TndX_transposase Se 26.6 3E+02 0.0065 22.4 7.0 53 56-123 55-107 (140)
87 TIGR02354 thiF_fam2 thiamine b 26.3 71 0.0015 28.2 3.2 26 61-86 36-64 (200)
88 TIGR00238 KamA family protein. 25.8 5.8E+02 0.013 24.2 10.6 39 55-95 144-183 (331)
89 cd07948 DRE_TIM_HCS Saccharomy 25.7 5.3E+02 0.011 23.7 9.2 94 62-169 77-179 (262)
90 PF00763 THF_DHG_CYH: Tetrahyd 25.7 3.5E+02 0.0075 21.6 9.9 55 8-78 12-66 (117)
91 PRK13507 formate--tetrahydrofo 25.5 6.9E+02 0.015 26.1 10.3 105 47-173 379-484 (587)
92 cd02903 Macro_BAL_like Macro d 25.2 1.7E+02 0.0038 23.9 5.2 40 55-94 91-130 (137)
93 PRK13347 coproporphyrinogen II 25.0 6.1E+02 0.013 25.1 10.0 28 53-80 216-243 (453)
94 PRK07764 DNA polymerase III su 25.0 5.7E+02 0.012 27.8 10.3 57 114-174 119-175 (824)
95 PF10566 Glyco_hydro_97: Glyco 24.7 4.2E+02 0.0092 24.8 8.2 102 54-177 30-150 (273)
96 TIGR02804 ExbD_2 TonB system t 24.4 2E+02 0.0044 23.0 5.4 22 54-75 96-117 (121)
97 TIGR03820 lys_2_3_AblA lysine- 24.3 7.2E+02 0.016 24.8 11.4 97 53-174 138-242 (417)
98 TIGR00513 accA acetyl-CoA carb 23.7 2.8E+02 0.0061 26.6 6.9 34 52-85 134-167 (316)
99 TIGR02801 tolR TolR protein. T 23.5 2.7E+02 0.0058 22.3 6.0 23 53-75 104-126 (129)
100 PF14698 ASL_C2: Argininosucci 23.4 1E+02 0.0022 22.6 3.1 26 41-71 13-38 (70)
101 PRK12606 GTP cyclohydrolase I; 23.1 77 0.0017 28.4 2.8 26 27-67 102-127 (201)
102 cd02908 Macro_Appr_pase_like M 22.8 3.2E+02 0.0068 23.0 6.5 47 55-101 91-138 (165)
103 PRK12319 acetyl-CoA carboxylas 22.6 1.2E+02 0.0026 28.2 4.1 31 52-82 81-111 (256)
104 PF11760 CbiG_N: Cobalamin syn 22.5 39 0.00085 26.0 0.7 47 13-65 25-72 (84)
105 PF13420 Acetyltransf_4: Acety 22.5 1.4E+02 0.003 23.9 4.1 31 50-80 90-121 (155)
106 PRK05301 pyrroloquinoline quin 22.5 6.8E+02 0.015 23.8 9.6 66 53-136 46-111 (378)
107 PF01268 FTHFS: Formate--tetra 22.3 2.5E+02 0.0055 29.1 6.6 125 23-173 319-456 (557)
108 PRK10886 DnaA initiator-associ 22.3 2E+02 0.0043 25.4 5.3 52 12-79 95-146 (196)
109 PRK08208 coproporphyrinogen II 22.2 4.5E+02 0.0097 25.9 8.4 28 53-80 205-232 (430)
110 PLN03230 acetyl-coenzyme A car 22.1 4.2E+02 0.009 26.6 7.9 32 51-82 203-234 (431)
111 cd02904 Macro_H2A_like Macro d 22.1 3.8E+02 0.0083 23.5 7.0 40 55-94 113-152 (186)
112 cd00003 PNPsynthase Pyridoxine 22.0 1.1E+02 0.0024 28.1 3.6 48 25-77 83-130 (234)
113 TIGR00542 hxl6Piso_put hexulos 21.8 5.9E+02 0.013 22.9 10.7 65 51-122 89-153 (279)
114 KOG0086|consensus 21.6 5.5E+02 0.012 22.4 11.4 117 53-184 66-185 (214)
115 COG0113 HemB Delta-aminolevuli 21.6 2E+02 0.0044 27.6 5.4 72 1-81 10-86 (330)
116 PTZ00484 GTP cyclohydrolase I; 21.2 74 0.0016 29.6 2.4 27 27-68 161-187 (259)
117 TIGR03586 PseI pseudaminic aci 21.2 7.4E+02 0.016 23.8 9.9 169 48-258 69-261 (327)
118 COG2759 MIS1 Formyltetrahydrof 21.2 8E+02 0.017 25.1 9.6 129 23-174 317-454 (554)
119 TIGR03821 AblA_like_1 lysine-2 21.0 3.9E+02 0.0084 25.3 7.4 39 54-94 126-165 (321)
120 PRK09249 coproporphyrinogen II 21.0 6.9E+02 0.015 24.7 9.4 27 53-79 215-241 (453)
121 PF14202 TnpW: Transposon-enco 20.8 1.3E+02 0.0027 19.5 2.8 28 144-171 8-35 (37)
122 cd02907 Macro_Af1521_BAL_like 20.7 3.9E+02 0.0084 22.7 6.7 40 55-94 98-137 (175)
123 CHL00198 accA acetyl-CoA carbo 20.1 2.9E+02 0.0063 26.6 6.2 34 51-84 136-169 (322)
No 1
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.9e-84 Score=590.82 Aligned_cols=238 Identities=36% Similarity=0.604 Sum_probs=229.8
Q ss_pred HhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHH
Q psy16152 19 LLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLAR 98 (295)
Q Consensus 19 ~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~ 98 (295)
.+..+++|+|||||||||||||+++|++..+||++|++++.++++||.++||++||||+||+|||+||++||+.||+++.
T Consensus 12 ~~~~~~iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L~~ 91 (253)
T PRK14832 12 DLDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFE 91 (253)
T ss_pred cCCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCC
Q psy16152 99 AKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKI 178 (295)
Q Consensus 99 ~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l 178 (295)
+++.+.. +.+.++||+|+++||++.||+++++.++++++.|++|++++||||++||||+||++|++++++++++|.+
T Consensus 92 ~~l~~~~---~~~~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~~~~v~~g~~ 168 (253)
T PRK14832 92 RLLRREL---AQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKL 168 (253)
T ss_pred HHHHHHH---HHHHhcCCEEEEEeCchhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCC
Confidence 9997653 4578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccccc
Q psy16152 179 TNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWR 258 (295)
Q Consensus 179 ~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~~ 258 (295)
++++||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+..||.+||.+||+|++|||++.
T Consensus 169 ~~~~i~e~~i~~~L~~~~~Pd~DLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~df~~al~~y~~R~RRfG~~~ 248 (253)
T PRK14832 169 SADAVNEQLVEQHLYTADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQALLSYQKRDRRFGQVK 248 (253)
T ss_pred ChhhCCHHHHHHhhCcCCCCCCCEEEECCCcccccCcHHHHHhheEEEECCCCCCcCCHHHHHHHHHHHHhccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred c
Q psy16152 259 A 259 (295)
Q Consensus 259 ~ 259 (295)
.
T Consensus 249 ~ 249 (253)
T PRK14832 249 A 249 (253)
T ss_pred c
Confidence 3
No 2
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.7e-84 Score=581.98 Aligned_cols=228 Identities=30% Similarity=0.529 Sum_probs=220.3
Q ss_pred CCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q psy16152 22 KGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKF 101 (295)
Q Consensus 22 ~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l 101 (295)
.+++|+|||||||||||||+++|++..+||.+|++++.++++||.++||++||||+||+|||+||++||+.||++++.++
T Consensus 3 ~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l 82 (230)
T PRK14837 3 KNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYL 82 (230)
T ss_pred CCCCCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCC
Q psy16152 102 KRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNE 181 (295)
Q Consensus 102 ~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~ 181 (295)
.+.. +.+.++||+|+++||+++||+++++.++++++.|++|++++||||++||||+||++|+++++. +.++++
T Consensus 83 ~~~~---~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~----~~~~~~ 155 (230)
T PRK14837 83 SSEF---NFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLS----SGLDLE 155 (230)
T ss_pred HHHH---HHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHh----cCCChh
Confidence 7643 458889999999999999999999999999999999999999999999999999999999984 568899
Q ss_pred CCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccc
Q psy16152 182 DVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEM 256 (295)
Q Consensus 182 dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk 256 (295)
+||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+..||.+||.+||+|++|||+
T Consensus 156 ~i~e~~~~~~L~~~~~p~~DLlIRTsGE~RLSnFLLWQ~ayaElyF~d~lWPdF~~~dl~~ai~~y~~R~RrfG~ 230 (230)
T PRK14837 156 TLNENVFSKFLDNPELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYVNHYSKDLECFKNRKRNFGR 230 (230)
T ss_pred hCCHHHHHHhhccCCCCCCCEEEECCCcccccccHHHhhhheEEEECCCCCccCCHHHHHHHHHHHhcccCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996
No 3
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.7e-84 Score=585.61 Aligned_cols=234 Identities=32% Similarity=0.538 Sum_probs=226.6
Q ss_pred cCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q psy16152 21 KKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAK 100 (295)
Q Consensus 21 ~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~ 100 (295)
-.+++|+|||||||||||||+++|++..+||.+|++++.+++.||.++||++||||+||+|||+||++||+.||++++++
T Consensus 4 ~~~~~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~ 83 (241)
T PRK14842 4 FESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEF 83 (241)
T ss_pred CCCCCCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCC
Q psy16152 101 FKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITN 180 (295)
Q Consensus 101 l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~ 180 (295)
+.+.. +.+.++||+|+++||++.||+++++.++++++.|++|++++||||++||||+||++|++++++++.+|.+++
T Consensus 84 l~~~~---~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~~~ 160 (241)
T PRK14842 84 IETRL---DTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLARKAKKVTL 160 (241)
T ss_pred HHHHH---HHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCCc
Confidence 98764 347789999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred C-CCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhccccc
Q psy16152 181 E-DVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMW 257 (295)
Q Consensus 181 ~-dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~ 257 (295)
+ +||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+..||.+||.+||+|++|||+.
T Consensus 161 ~~~i~e~~~~~~L~t~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdF~~~dl~~al~~y~~R~RrfG~~ 238 (241)
T PRK14842 161 EKPLKEKEFEKFLYTSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVDSLKWYETRTRKFGGL 238 (241)
T ss_pred cccCCHHHHHHHhCcCCCCCCCEEEECCCcccccCCHHHHHhceEEEECCCCCccCCHHHHHHHHHHHhccccccCCc
Confidence 6 7999999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2e-84 Score=591.10 Aligned_cols=244 Identities=35% Similarity=0.574 Sum_probs=233.0
Q ss_pred HHHHHHHHHhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHH
Q psy16152 11 WFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEV 90 (295)
Q Consensus 11 ~~~~~~~~~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev 90 (295)
.++..+.+.+..+++|+|||||||||||||+++|++..+||.+|++++.+++.||.++||++||||+||+|||+||++||
T Consensus 6 ~~~~~~~~~~~~~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev 85 (249)
T PRK14831 6 TKLQDLPADLDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEV 85 (249)
T ss_pred CcchhhhhhcccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHH
Confidence 34445556666788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHH
Q psy16152 91 NGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILI 170 (295)
Q Consensus 91 ~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~ 170 (295)
+.||+++++++.+.. +.+.++||+|+++||+++||+++++.++++++.|+.|++++||||++||||+||++|+++++
T Consensus 86 ~~Lm~L~~~~l~~~~---~~~~~~~iri~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~A~~~l~ 162 (249)
T PRK14831 86 NFLMTLFERVLRREL---EELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIA 162 (249)
T ss_pred HHHHHHHHHHHHHHH---HHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 999999999998653 45788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhCCCCCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhh
Q psy16152 171 DGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYD 250 (295)
Q Consensus 171 ~~v~~~~l~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r 250 (295)
+++++|.+++++||++.|+++|++.++||||||||||||+|||||||||++||||||++++||||++.||++||.+||+|
T Consensus 163 ~~v~~g~l~~~~i~e~~~~~~L~t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~dl~~al~~y~~R 242 (249)
T PRK14831 163 QQVQQGELDPSEIDENLFESELYTAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQSR 242 (249)
T ss_pred HHHHcCCCChHhCCHHHHHHhhccCCCCCCCEEEeCCCCccccCchhhhhhceeEEECCCCCCcCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccc
Q psy16152 251 FYTNEMW 257 (295)
Q Consensus 251 ~~R~Gk~ 257 (295)
++|||++
T Consensus 243 ~RRfG~~ 249 (249)
T PRK14831 243 ERRFGGV 249 (249)
T ss_pred ccCCCCC
Confidence 9999984
No 5
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6.1e-84 Score=586.51 Aligned_cols=241 Identities=34% Similarity=0.574 Sum_probs=231.5
Q ss_pred HHHHHHHhcCCCCCCEEEEEEcCChhhHHhcC----CchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHH
Q psy16152 13 QYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSN----AKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEE 88 (295)
Q Consensus 13 ~~~~~~~l~~~~iP~HIavImDGnrR~A~~~g----~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~ 88 (295)
+..-...|+.+++|+|||||||||||||+++| ++..+||.+|++++.+++.||.++||++||||+||+|||+||++
T Consensus 6 ~~~~~~~~~~~~~P~HVaiImDGNrRwAk~~~~~~gl~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~ 85 (250)
T PRK14840 6 EQAQENFPSLQSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKE 85 (250)
T ss_pred hhhhhhhcccCCCCCeEEEEcCCChHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHH
Confidence 34445668889999999999999999999975 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHH
Q psy16152 89 EVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRI 168 (295)
Q Consensus 89 Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~ 168 (295)
||+.||+++++++.+.. +.+.++||+|+++||+++||+++++.++++++.|++|++++||||++||||+||++|+++
T Consensus 86 EV~~Lm~L~~~~l~~~~---~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~ 162 (250)
T PRK14840 86 EVAELFSLFNSQLDSQL---PYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKK 162 (250)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCcHHHHHHHHHH
Confidence 99999999999998754 458889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCCCCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhh
Q psy16152 169 LIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248 (295)
Q Consensus 169 l~~~v~~~~l~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~ 248 (295)
+++++.+|.+++++|+++.|+++|++.++||||||||||||+|||||||||++||||||++++||||++.||.+||.+||
T Consensus 163 ~~~~v~~~~~~~~~i~~~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~df~~al~~y~ 242 (250)
T PRK14840 163 LHQDLANKKISSDDISEELISSYLDTSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTPNDLLEAIKTYQ 242 (250)
T ss_pred HHHHHHhCCCChhhCCHHHHHHHhccCCCCCCCEEEeCCCCcccccchHHhHhceeEEECCCCCCcCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccc
Q psy16152 249 YDFYTNEM 256 (295)
Q Consensus 249 ~r~~R~Gk 256 (295)
+|++||||
T Consensus 243 ~R~RrfG~ 250 (250)
T PRK14840 243 QRSRRGGK 250 (250)
T ss_pred cccCcCCC
Confidence 99999997
No 6
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=100.00 E-value=5.3e-84 Score=579.64 Aligned_cols=226 Identities=41% Similarity=0.694 Sum_probs=221.1
Q ss_pred CEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy16152 27 KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIE 106 (295)
Q Consensus 27 ~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~ 106 (295)
+|||||||||||||+++|++..+||.+|++++.+++.||.++||++||||+||+|||+||++||+.||+++++++.+.
T Consensus 1 ~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~-- 78 (226)
T TIGR00055 1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDRE-- 78 (226)
T ss_pred CcEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHH--
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred HHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCCCCCHH
Q psy16152 107 EKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMD 186 (295)
Q Consensus 107 ~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~dI~~~ 186 (295)
.+.+.++||+|+++||++.||+++++.++++++.|++|++++||||++||||+||++|++++++++++|.+++++||++
T Consensus 79 -~~~~~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~~~lnia~~Yggr~EI~~A~~~~~~~~~~g~~~~~~i~e~ 157 (226)
T TIGR00055 79 -VKELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEE 157 (226)
T ss_pred -HHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCChhhCCHH
Confidence 3457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhccc
Q psy16152 187 LFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNE 255 (295)
Q Consensus 187 ~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~G 255 (295)
.|+++|+++++||||||||||||+|||||||||++||||||++++||||+..||.+||.+||+|++|||
T Consensus 158 ~~~~~L~t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdF~~~~l~~al~~y~~R~RRfG 226 (226)
T TIGR00055 158 TLNKHLYTANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRRFG 226 (226)
T ss_pred HHHHhhccCCCCCCCEEEeCCCcccccCcHHHHHhceEEEECCCCCCcCCHHHHHHHHHHHhccCccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998
No 7
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.4e-84 Score=590.41 Aligned_cols=241 Identities=36% Similarity=0.588 Sum_probs=232.2
Q ss_pred HHHhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHH
Q psy16152 17 IKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDL 96 (295)
Q Consensus 17 ~~~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l 96 (295)
...|..+++|+|||||||||||||+++|++..+||.+|++++.+++.||.++||++||||+||+|||+||++||+.||++
T Consensus 6 ~~~~~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l 85 (253)
T PRK14836 6 QMIPANENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMEL 85 (253)
T ss_pred ccccccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhC
Q psy16152 97 ARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTN 176 (295)
Q Consensus 97 ~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~ 176 (295)
+..+|.+.. +.+.++||+|+++||.++||+++++.++++++.|++|++++||||++||||+||++|++++++++++|
T Consensus 86 ~~~~l~~~~---~~~~~~~irv~viG~~~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l~~~~~~g 162 (253)
T PRK14836 86 FLKALDREV---DKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAAG 162 (253)
T ss_pred HHHHHHHHH---HHHHHCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHhC
Confidence 999987653 45888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccc
Q psy16152 177 KITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEM 256 (295)
Q Consensus 177 ~l~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk 256 (295)
.+++++||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||++.||.+||.+||+|++|||+
T Consensus 163 ~l~~~~i~e~~i~~~L~~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~d~~~aL~~y~~R~RRfG~ 242 (253)
T PRK14836 163 KLAPDEIDEALLAQHLALADLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFDAQELQQALEDYASRERRFGK 242 (253)
T ss_pred CCChHhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCChHHHHhheEEEeCCCCCCcCCHHHHHHHHHHHHccCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q psy16152 257 WRAD 260 (295)
Q Consensus 257 ~~~~ 260 (295)
+.++
T Consensus 243 ~~~~ 246 (253)
T PRK14836 243 TSAQ 246 (253)
T ss_pred chhh
Confidence 7543
No 8
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.1e-83 Score=592.56 Aligned_cols=252 Identities=33% Similarity=0.583 Sum_probs=241.9
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCC
Q psy16152 4 VVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENF 83 (295)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~ 83 (295)
+|..++.+|++.+.+.+..+++|+|||||||||||||+++|++..+||.+|++++.++++||.++||++||||+||+|||
T Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~ 99 (275)
T PRK14835 20 ARGPLYWGYEQRLEREVKHGKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNF 99 (275)
T ss_pred ccchhHHHHHHHHHhhcccCCCCCEEEEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEcccc
Confidence 56788889999998888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHH
Q psy16152 84 KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMV 163 (295)
Q Consensus 84 ~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv 163 (295)
+||++||+.||+++++++.+++.. +.+.++||+|+++||.+.||+++++.++++++.|++|++++||||++||||+||+
T Consensus 100 ~R~~~EV~~Lm~L~~~~l~~~~~~-~~~~~~~irir~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~ 178 (275)
T PRK14835 100 SRSPAEVETLMNLFEREARRMAVD-PRIHANRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIV 178 (275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhch-hhhhhCCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHH
Confidence 999999999999999999877542 3578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCCCCCC----CHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHH
Q psy16152 164 ETSRILIDGLRTNKITNEDV----TMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWN 239 (295)
Q Consensus 164 ~a~r~l~~~v~~~~l~~~dI----~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~d 239 (295)
+|++++++++++|.+++++| +++.|+++|+++++||||||||||||+|||||||||++||||||++++||||++.|
T Consensus 179 ~A~k~i~~~~~~g~~~~~~i~~~~~e~~i~~~L~~~~~p~pDLLIRTsGE~RLSnFLLWQsayaElyF~d~lWPdF~~~d 258 (275)
T PRK14835 179 DAVKSLLLEAAATGKSPEEVAAELTPEHISAHLYTAGVPDPDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKVD 258 (275)
T ss_pred HHHHHHHHHHHcCCCChHHhcccCCHHHHHHHhccCCCCCCCEEEecCCCccccCCHHHhhhheEEEeCCCCCCcCCHHH
Confidence 99999999999999998876 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhcccc
Q psy16152 240 LINAVFAFQYDFYTNEM 256 (295)
Q Consensus 240 f~~aL~~Y~~r~~R~Gk 256 (295)
|++||.+||+|++|||+
T Consensus 259 ~~~ai~~yq~r~rRfG~ 275 (275)
T PRK14835 259 FLRALRDYQGRERRFGR 275 (275)
T ss_pred HHHHHHHHHhhcccCCC
Confidence 99999999999999996
No 9
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.5e-83 Score=587.44 Aligned_cols=249 Identities=34% Similarity=0.576 Sum_probs=239.7
Q ss_pred cchhhhhHHHHHHHHHHHhcCCCCCCEEEEEEcCChhhHHhcCCchh-HhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 2 SWVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTI-EGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~l~~~~iP~HIavImDGnrR~A~~~g~~~~-~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
+|++..++++|++.+.+.+..+++|+|||||||||||||+++|++.. +||.+|++++.++++||.++||++||||+||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~P~HvAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~ 82 (256)
T PRK14828 3 LNLRRLLYKVYARRLLGELDGAQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLST 82 (256)
T ss_pred cchhHHHHHHHHHHHHhhcccCCCCCEEEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEh
Confidence 58889999999999999998889999999999999999999999998 99999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHH
Q psy16152 81 ENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRD 160 (295)
Q Consensus 81 eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~ 160 (295)
|||+||++||+.||+++++++.++. .+++|+|+++||.++||+++++.++++++.|++|++++||||++||||+
T Consensus 83 eN~~R~~~Ev~~Lm~L~~~~l~~~~------~~~~irv~~iG~~~~lp~~~~~~~~~~e~~T~~~~~~~Lnia~~Yggr~ 156 (256)
T PRK14828 83 DNLGRPSEELNPLLDIIEDVVRQLA------PDGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQ 156 (256)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHH------HhCCeEEEEECChhhCCHHHHHHHHHHHHhhcCCCCcEEEEEecCCCHH
Confidence 9999999999999999999987653 3679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCCCCC----CCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCC
Q psy16152 161 EMVETSRILIDGLRTNKITNE----DVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFT 236 (295)
Q Consensus 161 eIv~a~r~l~~~v~~~~l~~~----dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~ 236 (295)
||++|++++++++.+|.++++ +||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+
T Consensus 157 EI~~A~~~~~~~~~~~~~~~~~~~~~i~e~~i~~~L~~~~~P~pDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~ 236 (256)
T PRK14828 157 EIVDAVRSLLTEHKDKGTSIDELAESVTVDAISTHLYTGGQPDPDLVIRTSGEQRLSGFMLWQSAHSEYYFCETYWPAFR 236 (256)
T ss_pred HHHHHHHHHHHHHHhCCCChhhccccCCHHHHHHHhccCCCCCCCEEEeCCCCCcccCChHHHhhheEEEeCCCCCccCC
Confidence 999999999999999988876 6788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccc
Q psy16152 237 AWNLINAVFAFQYDFYTNEM 256 (295)
Q Consensus 237 ~~df~~aL~~Y~~r~~R~Gk 256 (295)
+.||++||.+||+|++|||+
T Consensus 237 ~~dl~~al~~y~~r~RRfG~ 256 (256)
T PRK14828 237 KVDFLRALRDYSQRERRFGK 256 (256)
T ss_pred HHHHHHHHHHHHhhhccCCC
Confidence 99999999999999999996
No 10
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6.3e-84 Score=586.28 Aligned_cols=236 Identities=33% Similarity=0.491 Sum_probs=228.4
Q ss_pred HhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHH
Q psy16152 19 LLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLAR 98 (295)
Q Consensus 19 ~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~ 98 (295)
.+..+++|+|||||||||||||+++|++..+||.+|++++.+++.||.++||++||||+||+|||+||++||+.||++++
T Consensus 8 ~~~~~~~P~HvaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~ 87 (243)
T PRK14829 8 DIPKNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSR 87 (243)
T ss_pred ccccCCCCCeEEEecCCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCC
Q psy16152 99 AKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKI 178 (295)
Q Consensus 99 ~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l 178 (295)
+++... .+.+.++||+|+++|+.+.||+++++.+.++++.|+.|++++||||++||||+||++|++++++++++|.+
T Consensus 88 ~~l~~~---~~~~~~~~iri~~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~g~~ 164 (243)
T PRK14829 88 DVIHRR---REQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDGKI 164 (243)
T ss_pred HHHHHH---HHHHHHcCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCC
Confidence 999764 34578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhccccc
Q psy16152 179 TNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMW 257 (295)
Q Consensus 179 ~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~ 257 (295)
++++||++.|+++|+++++||||||||||||.|||||||||++||||||++++||||++.||++||.+||+|++|||++
T Consensus 165 ~~~~i~e~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~al~~y~~r~rRfG~~ 243 (243)
T PRK14829 165 SGDRVTEKMISDHLYNPDMPDVDLFLRTSGEQRTSNFLLWQSAYAELDFVPKLFPDFGRDDLWAAIDEYAHRDRRFGGV 243 (243)
T ss_pred ChHhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCchHHhHhheEEEeCCCCCCcCCHHHHHHHHHHHhccCccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
No 11
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.4e-83 Score=582.59 Aligned_cols=233 Identities=35% Similarity=0.563 Sum_probs=226.3
Q ss_pred hcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHH
Q psy16152 20 LKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARA 99 (295)
Q Consensus 20 l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~ 99 (295)
+..+++|+|||||||||||||+++|++..+||.+|+.++.+++.||.++||++||||+||+|||+||++||+.||+++.+
T Consensus 5 ~~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~~ 84 (242)
T PRK14838 5 IDMNRIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLD 84 (242)
T ss_pred ccCCCCCCEEEEeccCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCC
Q psy16152 100 KFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKIT 179 (295)
Q Consensus 100 ~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~ 179 (295)
++.+. .+.++||+|+++||+++||+++++.++++++.|++|++++||||++||||+||++|++++++++++|.++
T Consensus 85 ~l~~~-----~~~~~~irir~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~lnia~~Yggr~EI~~A~~~~~~~~~~g~~~ 159 (242)
T PRK14838 85 SIEEE-----TFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLVQNGELN 159 (242)
T ss_pred HHHHH-----HHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEeecCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 98642 4778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhccccc
Q psy16152 180 NEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMW 257 (295)
Q Consensus 180 ~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~ 257 (295)
+++||++.++++|+++++||||||||||||+|||||||||++||||||++++||||+..||++||.+||+|++|||++
T Consensus 160 ~~~i~e~~~~~~L~~~~~pd~DLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~ai~~y~~r~RrfG~~ 237 (242)
T PRK14838 160 PEEITEESISEHLTTNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCKAIYDYQKRERRFGKT 237 (242)
T ss_pred hhhCCHHHHHHHhccCCCCCCCEEEeCCCCccccCchHHHhcceeEEeCCCCCccCCHHHHHHHHHHHHhccccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997
No 12
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.4e-83 Score=581.46 Aligned_cols=239 Identities=35% Similarity=0.511 Sum_probs=231.2
Q ss_pred HhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHH
Q psy16152 19 LLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLAR 98 (295)
Q Consensus 19 ~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~ 98 (295)
.+..+++|+|||||||||||||+++|++..+||..|++++.+++.||.++||++||||+||+|||+||++||+.||+++.
T Consensus 8 ~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~ 87 (249)
T PRK14834 8 ESDAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLR 87 (249)
T ss_pred CCCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCC
Q psy16152 99 AKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKI 178 (295)
Q Consensus 99 ~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l 178 (295)
.++.+. .+.+.++||+|+++||+++||+++++.++++++.|++|++++||||++||||+||++|++++++++.+|.+
T Consensus 88 ~~l~~~---~~~~~~~~iri~viGd~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~~~~~~~g~~ 164 (249)
T PRK14834 88 LFIRRD---LAELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRL 164 (249)
T ss_pred HHHHHH---HHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCCHHHHHHHHHHHHHHHHcCCC
Confidence 999764 35688899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccccc
Q psy16152 179 TNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWR 258 (295)
Q Consensus 179 ~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~~ 258 (295)
+++|||++.|+++|++.++||||||||||||+|||||||||++||||||++++||+|++.||++||.+||+|++|||+.-
T Consensus 165 ~~~dI~e~~i~~~L~~~~~pdpDLLIRTsGe~RLSnFLlWQ~~yaElyF~~~lWPdf~~~d~~~al~~y~~r~rRfG~~~ 244 (249)
T PRK14834 165 DPASIDAETISANLDTADIPDPDLIIRTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAALEAAIEEYARRERRFGGLA 244 (249)
T ss_pred ChhhCCHHHHHHHhccCCCCCCCEEEEcCCcccccCChHHhHhheEEEeCCCCCCcCCHHHHHHHHHHHHhcCccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cc
Q psy16152 259 AD 260 (295)
Q Consensus 259 ~~ 260 (295)
++
T Consensus 245 ~~ 246 (249)
T PRK14834 245 AK 246 (249)
T ss_pred cc
Confidence 54
No 13
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=7.1e-83 Score=581.53 Aligned_cols=237 Identities=38% Similarity=0.617 Sum_probs=229.6
Q ss_pred HHhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHH
Q psy16152 18 KLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLA 97 (295)
Q Consensus 18 ~~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~ 97 (295)
+.+..+++|+|||||||||||||+++|++..+||.+|++++.+++.||.++||++||||+||+|||+||++||+.||+++
T Consensus 15 ~~~~~~~~P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~ 94 (251)
T PRK14830 15 EELDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLP 94 (251)
T ss_pred cccCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCC
Q psy16152 98 RAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNK 177 (295)
Q Consensus 98 ~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~ 177 (295)
+.+|.+.+. .+.+++|+|+++|+.++||+++++.++++++.|+.|++++||||++||||+||++|++++++++++|.
T Consensus 95 ~~~l~~~~~---~~~~~~iri~viG~~~~Lp~~~~~~~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~~~~v~~g~ 171 (251)
T PRK14830 95 VEFLDKFVP---ELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGK 171 (251)
T ss_pred HHHHHHHHH---HHHHcCCEEEEEcChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCC
Confidence 999988753 47789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhccccc
Q psy16152 178 ITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMW 257 (295)
Q Consensus 178 l~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~ 257 (295)
+++++|+++.|+++|+++++||||||||||||+|||||||||++||||||++++||||++.||++||.+||+|++|||+.
T Consensus 172 l~~~~I~e~~i~~~L~~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~aL~~y~~r~rrfG~~ 251 (251)
T PRK14830 172 LNPEDITEELISNYLMTKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKDYQSRQRRFGGV 251 (251)
T ss_pred CChHhCCHHHHHHHhCcCCCCCCCEEEeCCCCCcccCChHHHHcceEEEECCCCCCcCCHHHHHHHHHHHHhcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999984
No 14
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=9.1e-83 Score=574.78 Aligned_cols=229 Identities=38% Similarity=0.649 Sum_probs=221.4
Q ss_pred CCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHH
Q psy16152 24 HVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKR 103 (295)
Q Consensus 24 ~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~ 103 (295)
++|+|||||||||||||+++|++..+||.+|++++.+++.||.++||++||||+||+|||+||++||+.||+++++++.+
T Consensus 2 ~~P~HVaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~ 81 (233)
T PRK14841 2 RIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDR 81 (233)
T ss_pred CCCCEEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCCCC
Q psy16152 104 LIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDV 183 (295)
Q Consensus 104 ~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~dI 183 (295)
. .+.+.++||+|+++||.++||+++++.++++|+.|++|++++||||++||||+||++|+++++.++.+|.. .+|
T Consensus 82 ~---~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~--~~i 156 (233)
T PRK14841 82 E---MELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVSQGKK--IEL 156 (233)
T ss_pred H---HHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHHHcCCc--CCC
Confidence 4 34588899999999999999999999999999999999999999999999999999999999999888764 689
Q ss_pred CHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhccccc
Q psy16152 184 TMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMW 257 (295)
Q Consensus 184 ~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~ 257 (295)
+++.|+++|+++++||||||||||||+|||||||||++||||||++++||||++.||.+||.+||+|++|||++
T Consensus 157 ~~~~~~~~L~~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~dl~~al~~y~~r~rrfG~~ 230 (233)
T PRK14841 157 TEETFRQYLYLPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSKRERRFGGL 230 (233)
T ss_pred CHHHHHHHhccCCCCCCCEEEeCCCCccccCcHHHHhhceeEEECCCCCCcCCHHHHHHHHHHHHhcCccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996
No 15
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1e-82 Score=574.39 Aligned_cols=232 Identities=34% Similarity=0.506 Sum_probs=220.5
Q ss_pred CCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q psy16152 23 GHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFK 102 (295)
Q Consensus 23 ~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~ 102 (295)
+++|+|||||||||||||+++|++..+||.+|++++.+++.||.++||++||||+||+|||+||++||+.||+++++++.
T Consensus 2 ~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~ 81 (233)
T PRK14833 2 DNTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLK 81 (233)
T ss_pred CCCCCeEEEEccCCHHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCCC
Q psy16152 103 RLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNED 182 (295)
Q Consensus 103 ~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~d 182 (295)
+. .+.+.++||+|+++||+++||+++++.+.++++.|++|++++||||++||||+||++|++++++++.. .....+
T Consensus 82 ~~---~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~-~~~~~~ 157 (233)
T PRK14833 82 DE---RSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESPPS-HIGELE 157 (233)
T ss_pred HH---HHHHHhCCcEEEEEeChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHhhc-ccCccc
Confidence 65 34588899999999999999999999999999999999999999999999999999999999987531 123348
Q ss_pred CCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccccc
Q psy16152 183 VTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWR 258 (295)
Q Consensus 183 I~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~~ 258 (295)
|+++.|+++|+++++||||||||||||+|||||||||++||||||++++||||++.||.+||.+||+|++|||++|
T Consensus 158 i~e~~l~~~L~~~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~dl~~al~~y~~r~rrfG~~~ 233 (233)
T PRK14833 158 SLEEEISNCLDTADLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGGLK 233 (233)
T ss_pred CCHHHHHHHhccCCCCCCCEEEECCCCccccccHHHHHhceeEEECCCCCCcCCHHHHHHHHHHHHhhhhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
No 16
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=8.8e-83 Score=590.32 Aligned_cols=241 Identities=31% Similarity=0.464 Sum_probs=231.8
Q ss_pred HHHHHHhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHH
Q psy16152 14 YAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGL 93 (295)
Q Consensus 14 ~~~~~~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L 93 (295)
..+...|..+++|+|||||||||||||+++|++..+||.+|++++.+++.||.++||++||||+||+|||+|+++||+.|
T Consensus 56 ~~~~~~l~~~~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~L 135 (296)
T PRK14827 56 KAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFL 135 (296)
T ss_pred cccccccCCCCCCCeEEEeccCchHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHH
Confidence 34455677789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhh
Q psy16152 94 MDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGL 173 (295)
Q Consensus 94 ~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v 173 (295)
|+++++++.+. .+.+.++||+|+|+|+++.||+++++.++.+++.|++|++++||||++||||+||++|++++++++
T Consensus 136 m~L~~~~l~~~---~~~~~~~~irir~iG~~~~Lp~~v~~~i~~~e~~T~~n~~~~Lnia~~YgGR~EI~~A~~~i~~~v 212 (296)
T PRK14827 136 MGFNRDVVRRR---RDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAREA 212 (296)
T ss_pred HHHHHHHHHHH---HHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999998764 355888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhc
Q psy16152 174 RTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYT 253 (295)
Q Consensus 174 ~~~~l~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R 253 (295)
++|.+++++|+++.|+++|+++++||||||||||||+|||||||||++||||||++++||||++.||++||.+||+|++|
T Consensus 213 ~~g~l~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~ayaEl~F~d~lWPdF~~~dl~~al~~y~~R~RR 292 (296)
T PRK14827 213 AAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRNRR 292 (296)
T ss_pred HcCCCChhhccHHHHHHHhccCCCCCCCEEEecCCcccccCchHhhhhheEEEecCCCCccCCHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q psy16152 254 NEMW 257 (295)
Q Consensus 254 ~Gk~ 257 (295)
||++
T Consensus 293 fG~~ 296 (296)
T PRK14827 293 FGSA 296 (296)
T ss_pred CCCC
Confidence 9974
No 17
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.9e-81 Score=565.37 Aligned_cols=224 Identities=33% Similarity=0.537 Sum_probs=215.5
Q ss_pred CCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHH
Q psy16152 24 HVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKR 103 (295)
Q Consensus 24 ~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~ 103 (295)
.-|+|||||||||||||+++|++..+||.+|+.++.+++.||.++||++||||+||+|||+||++||+.||+++++++.+
T Consensus 8 ~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~ 87 (239)
T PRK14839 8 RSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRN 87 (239)
T ss_pred CCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCCCC
Q psy16152 104 LIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDV 183 (295)
Q Consensus 104 ~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~dI 183 (295)
.. +.+.++||+|+++||+++||+++++.++++|+.|++|++++||||++||||+||++|+++++ .+++|
T Consensus 88 ~~---~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~~~--------~~~~i 156 (239)
T PRK14839 88 ET---ERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAAKAL--------GPEGL 156 (239)
T ss_pred HH---HHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHhc--------CcccC
Confidence 54 45888999999999999999999999999999999999999999999999999999999864 47899
Q ss_pred CHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhccccccc
Q psy16152 184 TMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWRA 259 (295)
Q Consensus 184 ~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~~~ 259 (295)
|++.|+++|+ +++||||||||||||+|||||||||++||||||++++||||+..||.+||.+||+|++|||+++.
T Consensus 157 ~e~~~~~~l~-~~~p~~DLlIRTsGE~RLSnFLlWQ~ayael~F~d~lWPdF~~~d~~~ai~~yq~R~RrfG~~~~ 231 (239)
T PRK14839 157 SREAFSDLLT-GDGGDVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFHGRERRFGGLPA 231 (239)
T ss_pred CHHHHHHHhc-cCCCCCCEEEeCCCccccccchhhhhhheEEEEccCCCccCCHHHHHHHHHHHhccccccCCCCC
Confidence 9999999998 78999999999999999999999999999999999999999999999999999999999999874
No 18
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=100.00 E-value=3.2e-80 Score=554.91 Aligned_cols=221 Identities=51% Similarity=0.885 Sum_probs=215.9
Q ss_pred CCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy16152 26 PKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLI 105 (295)
Q Consensus 26 P~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~ 105 (295)
|+|||||||||||||+++|++..+||.+|++++.+++.||.++||++||||+||+|||+||++||+.||++++.++++.+
T Consensus 1 P~HvaiImDGNrRwA~~~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~ 80 (221)
T cd00475 1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRIL 80 (221)
T ss_pred CCeEEEecCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred HHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCCCCCH
Q psy16152 106 EEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTM 185 (295)
Q Consensus 106 ~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~dI~~ 185 (295)
+ .+.++||+||++||++.||+++++.++++++.|++|++++||||++||||+||++|++++++++++|.++++|||+
T Consensus 81 ~---~~~~~~i~vr~iGd~~~Lp~~~~~~~~~~e~~T~~~~~~~lni~~~Y~gr~eI~~a~~~~~~~~~~~~~~~~~i~~ 157 (221)
T cd00475 81 K---ELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGFTLNVAFNYGGRQEIIHAVREIAEKVKAGKLTPEDIDE 157 (221)
T ss_pred H---HHHHCCcEEEEEeChhhCCHHHHHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChHhCCH
Confidence 4 4778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhh
Q psy16152 186 DLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQY 249 (295)
Q Consensus 186 ~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~ 249 (295)
+.|+++|++.++||||||||||||+|||||||||++||||||++++||||++.||.+||.+||+
T Consensus 158 ~~~~~~L~~~~~p~pDLlIRTsGe~RLSnFLlWQ~~yaEl~F~~~lWPdf~~~~~~~al~~y~~ 221 (221)
T cd00475 158 STLNKHLYTHDSPDPDLLIRTSGEQRLSNFLLWQSAYSELYFSDVLWPDFTFWDFLRALLDYQR 221 (221)
T ss_pred HHHHHhhCcCCCCCCCEEEecCCccccccchHhhHhheeEEECCCCCCcCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999974
No 19
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=100.00 E-value=3.7e-79 Score=568.19 Aligned_cols=241 Identities=32% Similarity=0.521 Sum_probs=222.7
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHH
Q psy16152 9 LNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEE 88 (295)
Q Consensus 9 ~~~~~~~~~~~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~ 88 (295)
....++++.+.|+.+++|+|||||||||||||+++|++..+||.+|++++.++++||.++||++||||+||+|||+||++
T Consensus 3 ~~~~~~~~~~~l~~g~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~ 82 (322)
T PTZ00349 3 LNIIERFITSLLRDFINIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPE 82 (322)
T ss_pred hHHHHHHHHHHhhcCCCCCcEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHH-----
Q psy16152 89 EVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMV----- 163 (295)
Q Consensus 89 Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv----- 163 (295)
||+.||+++..++.+.....+.+.++||+||++|+++.||+++++.+.++++.|++|++++||||++||||+||+
T Consensus 83 EV~~Lm~L~~~~l~~~~~~~~~l~~~~irirviGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YggR~EI~~~v~~ 162 (322)
T PTZ00349 83 EIHFLFYLNLLILINEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSLCKFN 162 (322)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhCCCCCcEEEEEecCCCHHHHHHhhcc
Confidence 999999999888865421134678899999999999999999999999999999999999999999999999999
Q ss_pred -----HHHHHHHHh-------------hhhCCC---------------------------------------CCCCCCHH
Q psy16152 164 -----ETSRILIDG-------------LRTNKI---------------------------------------TNEDVTMD 186 (295)
Q Consensus 164 -----~a~r~l~~~-------------v~~~~l---------------------------------------~~~dI~~~ 186 (295)
+|+++++++ +++|.+ ++++|+++
T Consensus 163 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e~~i~~~ 242 (322)
T PTZ00349 163 PNLYFDTYKNLLEEKKILCGSNILTDPIKEGTFAIPDDEDECDYLDHELENERIDLDLKFDGDCICGEKSFLNEEQIEIV 242 (322)
T ss_pred cchHHHHHHHHHHHhccccccccccccccccccccchhcccccccccccccccccccccccccccccccccCChhhccHH
Confidence 799999887 344543 34456666
Q ss_pred HHHhhhccCCCCCCcEEEeeCCCcccCCCchhhc-cceeEEEccCCCCCCCHHHHHHHHHHhhh
Q psy16152 187 LFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQS-KSSFLYFCHKLWPEFTAWNLINAVFAFQY 249 (295)
Q Consensus 187 ~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~-~ytEl~f~~~lWp~f~~~df~~aL~~Y~~ 249 (295)
.|+++|+++++||||||||||||+|||||||||+ +||||||++++||||+.+||.+||.+||.
T Consensus 243 ~~~~~Lyt~~~PdpDLlIRTSGE~RLSNFLLWQ~aaysElyF~d~lWPdF~~~d~~~ai~~yq~ 306 (322)
T PTZ00349 243 NYHKKLLTSDLPPPNILIRTSGEKRLSDFMLYQISEFTEIYFINEYWPIFNFLQFIYIILHYTI 306 (322)
T ss_pred HHHHhccCCCCCCCCEEEECCCcccccccHHhhcccceEEEECCCCCCCCCHHHHHHHHHHHhh
Confidence 7999999999999999999999999999999999 69999999999999999999999999987
No 20
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=100.00 E-value=3.5e-79 Score=554.31 Aligned_cols=231 Identities=43% Similarity=0.736 Sum_probs=226.8
Q ss_pred CCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHH
Q psy16152 24 HVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKR 103 (295)
Q Consensus 24 ~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~ 103 (295)
.+|+|||||||||||||+++|++...||..|++++.+++.||.++||++||+|+||+|||+||++||+.||+++.+++.+
T Consensus 15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~ 94 (245)
T COG0020 15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE 94 (245)
T ss_pred ccccceEEEecCChHHHHhCCCChhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCCCC
Q psy16152 104 LIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDV 183 (295)
Q Consensus 104 ~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~dI 183 (295)
.. +.+++++|+|+++|+.+.||.++++.++.+++.|++|++++||+|++||||+||++|+|++++++++|++++++|
T Consensus 95 ~~---~~l~~~~v~v~~iG~~~~l~~~~~~~i~~~e~~t~~~~~~~l~~a~nYGGR~eI~~avr~ia~~v~~g~l~~~~I 171 (245)
T COG0020 95 EL---KKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPEDI 171 (245)
T ss_pred HH---HHHhhcCeEEEEEeccccCCHHHHHHHHHHHHhccCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHcCCCChHHc
Confidence 76 567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhccccc
Q psy16152 184 TMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMW 257 (295)
Q Consensus 184 ~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~ 257 (295)
|++.|+++|+++++|||||+||||||+|||||||||++||||||+|++||||++.||++||++||+|++|||++
T Consensus 172 ~e~~i~~~L~~~~~pdpDLlIRTsGe~RlSnFllWQ~aYsElyF~d~lWPdf~~~d~~~ai~~yq~R~rrfG~~ 245 (245)
T COG0020 172 DEELISSHLYTSGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRREDLLRAIRDYQKRERRFGRV 245 (245)
T ss_pred CHHHHHHhhcccCCCCCCEEEeCCCcccccccHHHHHHhCeEEeccccCCCCCHHHHHHHHHHHHhccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
No 21
>KOG1602|consensus
Probab=100.00 E-value=1.3e-78 Score=543.51 Aligned_cols=253 Identities=47% Similarity=0.838 Sum_probs=239.9
Q ss_pred chhhhhHHHHHHHHHHHhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCC
Q psy16152 3 WVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIEN 82 (295)
Q Consensus 3 ~~~~~~~~~~~~~~~~~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN 82 (295)
|+-+..+.+.++. +.+..+++|+||||||||||||||++|++..+||.+|+.++.++++||.++||++||+||||+||
T Consensus 16 ~~~~~~~~~~~~~--~~~~~g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieN 93 (271)
T KOG1602|consen 16 WIDEALQSLMEKF--RLLARGPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIEN 93 (271)
T ss_pred hHHHHHHHHHHHH--HHHhcCCCcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhh
Confidence 4445555566555 45666999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHH
Q psy16152 83 FKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEM 162 (295)
Q Consensus 83 ~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eI 162 (295)
|+|+++||+.||++++++++++......++++|||||++||+++||+++++.+.++++.|++|++++||||++|+||+||
T Consensus 94 FkRs~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr~EI 173 (271)
T KOG1602|consen 94 FKRSPEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSRDEI 173 (271)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCeEEEEEcchhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcHHHH
Confidence 99999999999999999999988777789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCCCCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHH
Q psy16152 163 VETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLIN 242 (295)
Q Consensus 163 v~a~r~l~~~v~~~~l~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~ 242 (295)
++|+|.++..+++|.+.+ ||++..++++||++..|.|||+||||||.||||||+||+++||++|.+.+||||+.++|+.
T Consensus 174 ~~a~r~~~~~~~~g~~~~-~i~~~~~e~~l~~~~~p~pDLlIRTSGe~RLSnFllWQ~s~t~l~f~~~LWPefg~~~l~~ 252 (271)
T KOG1602|consen 174 LHAVRGIVKRVKDGDIDV-DINLSDIEECLYTSDVPHPDLLIRTSGEDRLSNFLLWQTSETELFFADALWPEFGLWHLFW 252 (271)
T ss_pred HHHHHHHHHhhhcCCCcc-chhhHHHHHhhccCCCCCCCEEEEcCCcchHHHHHHHHhcccEEeeccccCccccHHHHHH
Confidence 999999999999998877 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhcccccc
Q psy16152 243 AVFAFQYDFYTNEMWR 258 (295)
Q Consensus 243 aL~~Y~~r~~R~Gk~~ 258 (295)
||.+||..++++|+-+
T Consensus 253 aiLkfq~~~~~l~~~~ 268 (271)
T KOG1602|consen 253 AILKFQRNQSYLGKRK 268 (271)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999998754
No 22
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.1e-78 Score=545.16 Aligned_cols=225 Identities=29% Similarity=0.473 Sum_probs=218.9
Q ss_pred EcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy16152 33 MDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLN 112 (295)
Q Consensus 33 mDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~ 112 (295)
||||||||+++|++..+||.+|+.++.+++.||.++||++||||+||+|||+||++||+.||++++++|.+.. +.+.
T Consensus 1 mDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~---~~~~ 77 (229)
T PRK10240 1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEV---KSLH 77 (229)
T ss_pred CCCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998654 4578
Q ss_pred hCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCCCCCHHHHHhhh
Q psy16152 113 EKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCL 192 (295)
Q Consensus 113 ~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~dI~~~~i~~~L 192 (295)
++||+|+++|++++||+++++.++++++.|++|++++||||++||||+||++|++++++++.+|.+++++|+++.|+++|
T Consensus 78 ~~~i~vr~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v~~g~~~~~~i~e~~i~~~L 157 (229)
T PRK10240 78 RHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHI 157 (229)
T ss_pred HCCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHHHcCCCChhhCCHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccccccc
Q psy16152 193 YTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWRAD 260 (295)
Q Consensus 193 ~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~~~~ 260 (295)
++.++||||||||||||+|||||||||++||||||++++||+|++.||++||.+||+|++|||++++-
T Consensus 158 ~t~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaElyF~~~lWPdf~~~df~~al~~y~~r~rrfG~~~~~ 225 (229)
T PRK10240 158 CMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTEPG 225 (229)
T ss_pred ccCCCCCCCEEEeCCCcccccCChHHHHhheEEEECCCCCCcCCHHHHHHHHHHHHccCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998653
No 23
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=100.00 E-value=1.9e-77 Score=539.51 Aligned_cols=223 Identities=45% Similarity=0.793 Sum_probs=199.5
Q ss_pred EEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy16152 32 IMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKL 111 (295)
Q Consensus 32 ImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~ 111 (295)
|||||||||+++|++..+||.+|++++.++++||.++||++||||+||+|||+||++||+.||+++++++.+++.+...
T Consensus 1 ImDGNrRwA~~~g~~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~- 79 (223)
T PF01255_consen 1 IMDGNRRWAKKRGLPRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDELNF- 79 (223)
T ss_dssp EE--HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCcCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhcch-
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988765332
Q ss_pred hhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCCCCCHHHHHhh
Q psy16152 112 NEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKC 191 (295)
Q Consensus 112 ~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~dI~~~~i~~~ 191 (295)
.++||+|+++||.+.||+++++.+++++..|++|++++||||++||||+||++|++++++.+++|+++++|||++.|+++
T Consensus 80 ~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~l~Lnia~~Yggr~eI~~a~~~~~~~~~~~~~~~~~i~~~~i~~~ 159 (223)
T PF01255_consen 80 HKNGIRVRVIGDLSLLPEELQKAIAEAEEKTKNNTGLTLNIAINYGGRDEIVDAARKLAEEVQSGKLSPEDIDEELISSH 159 (223)
T ss_dssp -HTTEEEEEES-GGGS-HHHHHHHHHHHHHHTTSSSEEEEEEECE-HHHHHHHHHHHHHHHHHTTSSGGGG-SHHHHHHT
T ss_pred hhcCeeEEEEeccCcCCHHHHHHHHHHHHhhccCcceeEEEEecCCcHHHHHHHHHHhhhhhccCccccccCCHHHHHhh
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccc
Q psy16152 192 LYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEM 256 (295)
Q Consensus 192 L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk 256 (295)
|+++++| ||||||||||.|||||||||++||||||++++||+|++.||+.||.+||+|+|||||
T Consensus 160 L~~~~~P-pDLlIRtsGe~RLS~FllWq~~y~El~f~~~~WPdf~~~d~~~al~~y~~r~rrfGk 223 (223)
T PF01255_consen 160 LYTPDLP-PDLLIRTSGEQRLSNFLLWQSAYAELYFTDTLWPDFSFWDFLRALLEYQRRERRFGK 223 (223)
T ss_dssp STTTTS---SEEEEETT--C-TTSSTTTTTT-EEEEESSSGGG--HHHHHHHHHHHHHCHHHTT-
T ss_pred ccccCCC-CCEEEEeCCCcccCCCeEEeecCcEEEECCCCCccCCHHHHHHHHHHHHhhhccCCC
Confidence 9999987 999999999999999999999999999999999999999999999999999999997
No 24
>KOG2818|consensus
Probab=99.91 E-value=1.4e-24 Score=195.93 Aligned_cols=202 Identities=15% Similarity=0.133 Sum_probs=154.2
Q ss_pred cCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q psy16152 21 KKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAK 100 (295)
Q Consensus 21 ~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~ 100 (295)
...+.|+|+|+|.-.++- | .-.+..+.+++.||...||+++++|+.-+ -.+|...++.. .+...
T Consensus 60 ~L~k~p~hl~lvI~~v~~-----------~-~~~~~da~~~v~w~v~~gik~~~lyd~~g-~~~r~~~~~~~---~I~s~ 123 (263)
T KOG2818|consen 60 SLKKGPKHLALVIHPVED-----------G-EGSFSDASSIVFWAVTVGIKYLSLYDRVG-IKKRNMPVVRD---EIISH 123 (263)
T ss_pred hhhhcchhheEEEEeccc-----------C-CceehhhHHHHHHHHHhccceeeHHHHHH-HhccCcHHHHH---HHHHh
Confidence 457899999988766641 1 12367889999999999999999999875 45777765543 23222
Q ss_pred HHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhC--CC
Q psy16152 101 FKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTN--KI 178 (295)
Q Consensus 101 l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~--~l 178 (295)
+.... . .+.. .+.+.- .+..+ +.....+..+.+...+..|||.-|++.++.+.+.+... ..
T Consensus 124 la~~~---g-~~~~--~~~~~~---~~snD--------~~nQ~~~~~L~~~~~s~~DGr~~i~Dl~r~i~~~~~~~~~~~ 186 (263)
T KOG2818|consen 124 LANYF---G-LDEP--TLAVTI---KLSND--------EPNQEDKCKLGTHAISLEDGRMIIIDLTRLIQELCYLYELYR 186 (263)
T ss_pred hhhhc---C-CCCC--cccccC---CCCCC--------CcccccccchhheecccccccHHHHHHHHHHHHHHHHHHHhC
Confidence 21110 0 0010 011100 11111 22224567788888999999999999999998887655 47
Q ss_pred CCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccc
Q psy16152 179 TNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEM 256 (295)
Q Consensus 179 ~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk 256 (295)
++++||.+.+++.|...+.|||||+|++|+...|+||||||++.|||+..+.+ -.+++++|.++|++|+.|++|+|+
T Consensus 187 ~~~~itve~vds~l~e~~~PePdLll~fg~~~~l~GfpPWhiRltEf~~~p~~-~~~~~e~f~~~lr~ya~ce~RvGk 263 (263)
T KOG2818|consen 187 SETDITVETVDSELKEFVEPEPDLLLFFGPVLVLQGFPPWHIRLTEFTRKPSH-LCTSYETFFRALRKYADCEQRVGK 263 (263)
T ss_pred CCccccHHHHHHHHHhcCCCCcceeeeeccchhhcCCCCceeEEEEeEecccc-CcccHHHHHHHHHHHhhhhhhcCC
Confidence 89999999999999988999999999999999999999999999999999988 599999999999999999999996
No 25
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=72.00 E-value=49 Score=26.97 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCC
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELL 127 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~l 127 (295)
...+...+++.-|.+.|...|-++. +++.- ..++| +..+...+ .+++-.+++++-++||.+.-
T Consensus 19 ~~~qdalDLi~~~~~~~~~~i~l~~---~~l~~------dFF~L-~TglAGei--LQKf~NY~iklAivGD~s~~ 81 (113)
T PF13788_consen 19 SDEQDALDLIGTAYEHGADRIILPK---EALSE------DFFDL-RTGLAGEI--LQKFVNYRIKLAIVGDFSAY 81 (113)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEEh---HHCCH------HHHHh-hcchHHHH--HHHHHhhceeEEEEEccccc
Confidence 3467788899999999999999987 22111 12333 22222211 35677899999999998766
No 26
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=69.01 E-value=58 Score=30.12 Aligned_cols=106 Identities=13% Similarity=0.232 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-..+.+.++++|+.+.||.-|.+...++|.+.-+.+|-..+++...+... ..+.| +.|=.+ .++.
T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-----------~~~~v-i~gv~~---~s~~ 80 (285)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-----------GRVPV-IAGTGS---NATE 80 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-----------CCCeE-EEeCCC---ccHH
Confidence 45788999999999999999999999999999999999988766554321 12222 233221 2233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+........+..+-+.=.| -+.++|++-.+.+++.+
T Consensus 81 ~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~ 123 (285)
T TIGR00674 81 EAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEV 123 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcC
Confidence 444443333322223222221112 25789999999988763
No 27
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=61.31 E-value=36 Score=29.30 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=45.2
Q ss_pred CCCEEEEEEcCChhhHHhcCCchhHhHHhhHH-----HHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHH
Q psy16152 25 VPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFD-----KLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARA 99 (295)
Q Consensus 25 iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~-----~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~ 99 (295)
-|.|++++.|+.+..=|..-.|...+++.... .+..+-+++..+||+.+..= --|-+.++..+..
T Consensus 50 ~p~~~vv~fD~~~~~fR~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~~----------g~EADDvIatla~ 119 (169)
T PF02739_consen 50 KPDYVVVAFDSKGPTFRKELYPEYKANRKPMPEELIPQLPYIKELLEALGIPVLEVP----------GYEADDVIATLAK 119 (169)
T ss_dssp TEEEEEEEEEBSSCHHHHHCCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEET----------TB-HHHHHHHHHH
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEecCC----------CCcHHHHHHHHHh
Confidence 49999999999876555666677777776533 34566777888899877632 2566677666544
Q ss_pred H
Q psy16152 100 K 100 (295)
Q Consensus 100 ~ 100 (295)
.
T Consensus 120 ~ 120 (169)
T PF02739_consen 120 K 120 (169)
T ss_dssp H
T ss_pred h
Confidence 3
No 28
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=61.20 E-value=82 Score=29.14 Aligned_cols=106 Identities=15% Similarity=0.207 Sum_probs=66.6
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|+.+.||+-|.+...++|-+.-+.+|-..+++...+... ..+.| +.|=.. .++.
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~-----------~~~~v-i~gv~~---~~~~ 83 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN-----------GRVPV-IAGTGS---NSTA 83 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC-----------CCCcE-EeecCC---chHH
Confidence 45788999999999999999999999999999999999988776655321 11221 233211 2233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+........+..+-+.=.| -+.++|.+-.+.+++.+
T Consensus 84 ~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~ 126 (292)
T PRK03170 84 EAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT 126 (292)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC
Confidence 444444433322222222211112 25788999898888753
No 29
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=60.98 E-value=98 Score=28.28 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAK 100 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~ 100 (295)
-..+.+.++++|+.+.||.-|.+...++|.+.-+.+|-..+++...+.
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~ 62 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEA 62 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999887776553
No 30
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=59.51 E-value=1.5e+02 Score=27.56 Aligned_cols=123 Identities=14% Similarity=0.179 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-..+.+.++++|+.+.||.-|.+..-++|.+.-+.+|-..+++...+... ..+.| ++|=.. .+.
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-----------g~~pv-i~gv~~----~t~ 86 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK-----------GKVPV-YTGVGG----NTS 86 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCc----cHH
Confidence 45688999999999999999999999999999999999988776554321 11221 233211 133
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhhhhC----CCCCCCCCHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGLRTN----KITNEDVTMDLFDKC 191 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v~~~----~l~~~dI~~~~i~~~ 191 (295)
++++.+....+...+..+-+.=.| -+.++|.+-.+.+++.+.-. +.+..+++.+.+.+.
T Consensus 87 ~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~L 151 (296)
T TIGR03249 87 DAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERL 151 (296)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHH
Confidence 444444433333333333232223 36788998888888754100 012235666655544
No 31
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=58.01 E-value=77 Score=26.01 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEe---ecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHH
Q psy16152 57 KLAETLQWCLDLGVREVTVYA---FSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIA 133 (295)
Q Consensus 57 ~l~~ii~wc~~~GI~~lTvY~---fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~ 133 (295)
....+-.||...|+..+-+|. .|+.|+.|| ++..|++. +....+.+-++-++++|..++..
T Consensus 23 Q~~~l~~~a~~~g~~i~~~~~D~~~SG~~~~Rp--~l~~ll~~--------------~~~g~vd~vvv~~ldRl~R~~~d 86 (140)
T cd03770 23 QKAILEEYAKENGLENIRHYIDDGFSGTTFDRP--GFNRMIED--------------IEAGKIDIVIVKDMSRLGRNYLK 86 (140)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCCcCCcCCCH--HHHHHHHH--------------HHcCCCCEEEEeccchhccCHHH
Confidence 355667889999998877774 588787775 34443332 22345667778888888888766
Q ss_pred HHHHHHHhc
Q psy16152 134 SFKEAMHIT 142 (295)
Q Consensus 134 ~~~~~e~~T 142 (295)
.+.-++...
T Consensus 87 ~~~~~~~l~ 95 (140)
T cd03770 87 VGLYMEILF 95 (140)
T ss_pred HHHHHHHHH
Confidence 555444433
No 32
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=56.50 E-value=19 Score=32.70 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCChhhHHhcCCchhHhHHhh-----HHHHHHHHHHHHhcCCCeEEE
Q psy16152 25 VPKHIAFIMDGNRRYAKRSNAKTIEGHSKG-----FDKLAETLQWCLDLGVREVTV 75 (295)
Q Consensus 25 iP~HIavImDGnrR~A~~~g~~~~~Gh~~g-----~~~l~~ii~wc~~~GI~~lTv 75 (295)
-|.|++|+.||.+..=|..=.+...+++.. ...+..+-+++..+||+.+..
T Consensus 49 ~p~~~~~~fD~~~~~~R~~l~p~YK~~R~~~p~~l~~q~~~~~~~l~~~gi~~i~~ 104 (240)
T cd00008 49 KPTYVAVVFDAGGKTFRHELYPEYKANRKKMPEELREQIPLIKELLEALGIPVLEI 104 (240)
T ss_pred CCCeEEEEEeCCCCcccccccHHHHcCCCCCCHHHHHHHHHHHHHHHHCCCCEEec
Confidence 399999999997443344434444444433 223344555666689988764
No 33
>PRK09482 flap endonuclease-like protein; Provisional
Probab=55.60 E-value=19 Score=33.37 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=40.4
Q ss_pred HHHHHhcCCCCCCEEEEEEcCChh---hHHhcCCchhHhHHhh-----HHHHHHHHHHHHhcCCCeEEEEeecCCCCCCC
Q psy16152 15 AIIKLLKKGHVPKHIAFIMDGNRR---YAKRSNAKTIEGHSKG-----FDKLAETLQWCLDLGVREVTVYAFSIENFKRT 86 (295)
Q Consensus 15 ~~~~~l~~~~iP~HIavImDGnrR---~A~~~g~~~~~Gh~~g-----~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~ 86 (295)
.+.+.++. .-|.||+|+.|+.++ | |..=.|...+++.. ...+..+-+.+..+||..++. +
T Consensus 37 ~l~~ll~~-~~p~~i~v~fD~~~~~~~f-R~~l~p~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~~~~----------~ 104 (256)
T PRK09482 37 ALDKLIRH-SQPTHAVAVFDGDARSSGW-RHQLLPDYKAGRKPMPEALQQGLPAIRAAFEELGIDSWHA----------D 104 (256)
T ss_pred HHHHHHHH-cCCCEEEEEEeCCCCCccc-HHHHhHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCEecc----------C
Confidence 34455543 349999999998654 4 32223333333321 333444556777789977652 2
Q ss_pred HHHHHHHHHHHHH
Q psy16152 87 EEEVNGLMDLARA 99 (295)
Q Consensus 87 ~~Ev~~L~~l~~~ 99 (295)
.-|-+.++..+..
T Consensus 105 g~EADDvIatla~ 117 (256)
T PRK09482 105 GNEADDLIATLAV 117 (256)
T ss_pred CcCHHHHHHHHHH
Confidence 2456666555433
No 34
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=53.98 E-value=1.5e+02 Score=27.63 Aligned_cols=47 Identities=21% Similarity=0.115 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARA 99 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~ 99 (295)
-..+.+.++++|..+.||.-|.+-..++|.+.-+.+|-..+++...+
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~ 64 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAID 64 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999988876544
No 35
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=53.68 E-value=1.3e+02 Score=28.30 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=66.4
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|+.+.||.-|.+-.-++|...-+.+|-..+++...+.. ...+.| ++|=.+.=..+..
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-----------~grvpv-i~Gv~~~~t~~ai 93 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETV-----------AGRVPV-FVGATTLNTRDTI 93 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHh-----------CCCCCE-EEEeccCCHHHHH
Confidence 4578999999999999999999999999999999999998876655432 122322 3343222223333
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
+.++.+++. ..+..+-+.=.| .+.++|++-.+++++..
T Consensus 94 ~~a~~A~~~---Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~ 133 (309)
T cd00952 94 ARTRALLDL---GADGTMLGRPMWLPLDVDTAVQFYRDVAEAV 133 (309)
T ss_pred HHHHHHHHh---CCCEEEECCCcCCCCCHHHHHHHHHHHHHhC
Confidence 333333332 223333222112 35688888888887753
No 36
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=53.49 E-value=1.8e+02 Score=26.70 Aligned_cols=104 Identities=19% Similarity=0.264 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-..+.+.++++|+.+.||.-+.+...++|.+.-+.+|-..|++...+.. ..++.| +.|=.+.=..+..
T Consensus 19 id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~-----------~~~~~v-i~gv~~~st~~~i 86 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAA-----------AGRVPV-IAGVGANSTEEAI 86 (289)
T ss_dssp B-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHH-----------TTSSEE-EEEEESSSHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHc-----------cCceEE-EecCcchhHHHHH
Confidence 4578899999999999999999999999999999999998877754432 122332 2231111122333
Q ss_pred HHHHHHHHhccCCCceEEEEEecC---CCHHHHHHHHHHHHHh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY---TSRDEMVETSRILIDG 172 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y---~Gr~eIv~a~r~l~~~ 172 (295)
+.++.+++. .-+.. -+..+| -+.++|++-.+.+++.
T Consensus 87 ~~a~~a~~~---Gad~v-~v~~P~~~~~s~~~l~~y~~~ia~~ 125 (289)
T PF00701_consen 87 ELARHAQDA---GADAV-LVIPPYYFKPSQEELIDYFRAIADA 125 (289)
T ss_dssp HHHHHHHHT---T-SEE-EEEESTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc---CceEE-EEeccccccchhhHHHHHHHHHHhh
Confidence 333333332 22222 223333 5788899999988864
No 37
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=53.07 E-value=1.7e+02 Score=26.27 Aligned_cols=64 Identities=8% Similarity=0.137 Sum_probs=41.1
Q ss_pred HHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEe
Q psy16152 51 HSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRII 121 (295)
Q Consensus 51 h~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~i 121 (295)
....++.+.+.+++|..+|++.|.+.... .++..+.++ .++.+.+.+++++. ...+.||++-+-
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~-~~~~~~~~~---~~~~~~~~l~~l~~---~a~~~gv~l~iE 148 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAH-AGYLTPPNV---IWGRLAENLSELCE---YAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCCCCHHH---HHHHHHHHHHHHHH---HHHHcCCEEEEe
Confidence 44668899999999999999999886532 233333333 22334455555533 356678887654
No 38
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=51.81 E-value=2e+02 Score=27.03 Aligned_cols=104 Identities=15% Similarity=0.242 Sum_probs=51.4
Q ss_pred HhhHHHHHHHHHHHHhcCCCeEEEEeecCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccC-CCC
Q psy16152 52 SKGFDKLAETLQWCLDLGVREVTVYAFSIENF---KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNI-ELL 127 (295)
Q Consensus 52 ~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~---~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~-~~l 127 (295)
..-++.+.+++.|+.+.||+ ||-+|.+=+ .-| ..--.+...+.+.|+++ .+.++++|+|+-+.-+. ..|
T Consensus 41 ~~Nl~~l~~~L~~n~~~~I~---~yRisS~liP~ashp-~~~~~~~~~~~~~l~~i---G~~~~~~~iRls~HP~qf~vL 113 (275)
T PF03851_consen 41 RQNLEDLLRILEYNIAHGIR---FYRISSDLIPLASHP-EVGWDWEEEFAEELAEI---GDLAKENGIRLSMHPDQFTVL 113 (275)
T ss_dssp HHHHHHHHHHHHHHHHTT-----EEE--TTSSTTTTST-T--S-HHHHHHHHHHHH---HHHHHHTT-EEEE---TT--T
T ss_pred HHHHHHHHHHHHHHHHcCCC---EEecCcccCCCCCCc-ccccchHHHHHHHHHHH---HHHHHHcCCeEEecCCcceeC
Confidence 35588899999999999865 677776332 223 11122334445555443 35678899998876653 223
Q ss_pred ----CHHHHHHHHHHHHhcc-----C-----CCceEEEEEecCCCHHHH
Q psy16152 128 ----PSDLIASFKEAMHITK-----D-----NTEGFLNVAFSYTSRDEM 162 (295)
Q Consensus 128 ----p~~~~~~~~~~e~~T~-----~-----~~~~~lni~~~y~Gr~eI 162 (295)
|+-+.+++.+++..+. + ...+.|.+-..||+|++=
T Consensus 114 nSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK~~a 162 (275)
T PF03851_consen 114 NSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDKEAA 162 (275)
T ss_dssp T-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-HHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCChHHH
Confidence 3335556666554221 1 145677777779998854
No 39
>PLN02417 dihydrodipicolinate synthase
Probab=45.73 E-value=2.5e+02 Score=25.95 Aligned_cols=47 Identities=11% Similarity=-0.002 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARA 99 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~ 99 (295)
-..+.+.++++|+.+.||.-|.+-..++|.+.-+.+|-..+++...+
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~ 65 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVN 65 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999988776544
No 40
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=45.49 E-value=25 Score=28.91 Aligned_cols=32 Identities=25% Similarity=0.525 Sum_probs=23.9
Q ss_pred EecCCCHHHHHHHHHHHHHh-hhhCCCCCCCCC
Q psy16152 153 AFSYTSRDEMVETSRILIDG-LRTNKITNEDVT 184 (295)
Q Consensus 153 ~~~y~Gr~eIv~a~r~l~~~-v~~~~l~~~dI~ 184 (295)
.+.-+.+++|.+|+++|.++ ++.|+++++||-
T Consensus 9 tv~~n~~e~I~~at~eLl~~i~~~N~l~~~dIv 41 (118)
T PF07736_consen 9 TVEENTPEEILEATRELLEEILERNELSPEDIV 41 (118)
T ss_dssp E-SSSSHHHHHHHHHHHHHHHHHHTT--GGGEE
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEE
Confidence 45678999999999999887 467888888764
No 41
>PRK02551 flavoprotein NrdI; Provisional
Probab=43.44 E-value=1.6e+02 Score=25.13 Aligned_cols=56 Identities=14% Similarity=0.287 Sum_probs=40.1
Q ss_pred EEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q psy16152 28 HIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFK 102 (295)
Q Consensus 28 HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~ 102 (295)
-.|||--|||-|...- ...++ ..+.+.+|+.|.-|.+++ .+++|..+.+.+++.++
T Consensus 96 ~~gVigsGNrNfg~~F------------~~aa~--~ia~~~~vP~L~~fEl~G-----T~~Dv~~v~~~~~~~~~ 151 (154)
T PRK02551 96 CLGIIGSGNRNFNNQY------------CLTAK--QYAKRFGFPMLADFELRG-----TPSDIERIAAIIAELYA 151 (154)
T ss_pred eEEEEeecccHHHHHH------------HHHHH--HHHHHcCCCEEEEeeccC-----CHHHHHHHHHHHHHHHH
Confidence 3799999999875422 22222 446789999999999999 46778877777666543
No 42
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=42.78 E-value=1.9e+02 Score=24.11 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=40.3
Q ss_pred HHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccC
Q psy16152 51 HSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNI 124 (295)
Q Consensus 51 h~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~ 124 (295)
.....+.+.+.++.|..+|++++++....-.-......+ .-.+.+.+.+.++.. ...+.|+++-+-.-.
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~--~~~~~~~~~l~~l~~---~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTE--ENWERLAENLRELAE---IAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHH--HHHHHHHHHHHHHHH---HHHHHTSEEEEE-SS
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHH--HHHHHHHHHHHHHHh---hhhhhcceEEEeccc
Confidence 456789999999999999999999885410011111111 223333444544432 345677877666543
No 43
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=42.37 E-value=1.5e+02 Score=22.56 Aligned_cols=62 Identities=23% Similarity=0.383 Sum_probs=36.9
Q ss_pred CCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEe-ecCCCC----------------CC--
Q psy16152 25 VPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYA-FSIENF----------------KR-- 85 (295)
Q Consensus 25 iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~-fS~eN~----------------~R-- 85 (295)
+-+.|+|++|.+-- +..+.+++.-...--++.|.+++ |.+++. .|
T Consensus 6 ~~RDiS~~v~~~~~----------------~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~~g~kS~~~rl~~~~~~~TL 69 (94)
T PF03147_consen 6 VERDISFVVPEDVP----------------FADIEEVIRSAGGPLLESVELFDVYRGEKLPEGKKSLTYRLTYQSPDRTL 69 (94)
T ss_dssp EEEEEEEEEETTS-----------------HHHHHHHHHHHHTTTEEEEEEEEEEESTTSGTTEEEEEEEEEE--SSS--
T ss_pred ccccEEEEECCCCC----------------HHHHHHHHHHhCccceeEEEEEEEEcCCCCCCCcEEEEEEEEEECCCCCC
Confidence 34789999998743 34455444443332366666666 445442 12
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy16152 86 TEEEVNGLMDLARAKFK 102 (295)
Q Consensus 86 ~~~Ev~~L~~l~~~~l~ 102 (295)
+.+||+.+++.+...+.
T Consensus 70 t~~ev~~~~~~i~~~l~ 86 (94)
T PF03147_consen 70 TDEEVNEIHDKIIKALE 86 (94)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 45899999888877653
No 44
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=40.43 E-value=3e+02 Score=25.38 Aligned_cols=101 Identities=11% Similarity=0.027 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-..+.+.++++|..+.||.-|.+-.-++|.+.-+.+|-..+.+...+.. .++ +--+|.. -..+..
T Consensus 17 iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~------------~~v-i~gvg~~--~~~~ai 81 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT------------DKV-IFQVGSL--NLEESI 81 (279)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc------------CCE-EEEeCcC--CHHHHH
Confidence 4578899999999999999999999999999999999998876654321 122 3334432 233333
Q ss_pred HHHHHHHHhccCCCceEEEEEecC---CCHHHHHHHHHHHHH
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY---TSRDEMVETSRILID 171 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y---~Gr~eIv~a~r~l~~ 171 (295)
+..+.+++. ..+..+-+.=.| .+.++|++=.+.+++
T Consensus 82 ~~a~~a~~~---Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~ 120 (279)
T cd00953 82 ELARAAKSF---GIYAIASLPPYYFPGIPEEWLIKYFTDISS 120 (279)
T ss_pred HHHHHHHHc---CCCEEEEeCCcCCCCCCHHHHHHHHHHHHh
Confidence 333333332 223333222223 257888888888877
No 45
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=40.29 E-value=1.4e+02 Score=31.17 Aligned_cols=47 Identities=23% Similarity=0.318 Sum_probs=33.6
Q ss_pred CCCC--CEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 23 GHVP--KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 23 ~~iP--~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
..+| -+|||+++-..+|+. . =--|..+|+-.|++|+.++ ++|+..++
T Consensus 65 lg~~~gdrvai~a~nr~eW~i-----------------~--d~a~~~~g~v~Vp~y~t~~------~~~~~~iL 113 (613)
T COG1022 65 LGIPAGDRVAIFAANRPEWAI-----------------A--DLAILALGAVSVPIYSTST------PEQLAYIL 113 (613)
T ss_pred cCCCCCCEEEEEeCCCHHHHH-----------------H--HHHHHHcCCeEEecCCCCC------HHHHHHHH
Confidence 3456 789999998888863 1 1237788999999999876 36666543
No 46
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=40.05 E-value=2.8e+02 Score=24.92 Aligned_cols=65 Identities=8% Similarity=0.249 Sum_probs=39.6
Q ss_pred HHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEec
Q psy16152 51 HSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIG 122 (295)
Q Consensus 51 h~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iG 122 (295)
.....+.+.+.+++|..+|++.|.+..+.. +..+..+ ..++.+.+.+.+++ +...+.||++-+-.
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~--~~~~~~~--~~~~~~~~~l~~l~---~~a~~~gv~l~lE~ 153 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGYDV--YYEEKSE--ETRQRFIEGLAWAV---EQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCccc--ccccccH--HHHHHHHHHHHHHH---HHHHHhCCEEEEEe
Confidence 446688899999999999999999754321 1111111 12233344454443 33567788877654
No 47
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=39.93 E-value=3.1e+02 Score=25.45 Aligned_cols=105 Identities=18% Similarity=0.111 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHhcC-CCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHH
Q psy16152 53 KGFDKLAETLQWCLDLG-VREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDL 131 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~G-I~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~ 131 (295)
-..+.+.++++|+.+.| |.-|.+..-++|.+.-+.+|-..+++...+.. ...+.| ++|=...=..+.
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~-----------~~~~pv-i~gv~~~~t~~~ 85 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEA-----------KDQIAL-IAQVGSVNLKEA 85 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHh-----------CCCCcE-EEecCCCCHHHH
Confidence 45788999999999999 99999999999999999999998876655432 112222 233221112333
Q ss_pred HHHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHh
Q psy16152 132 IASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDG 172 (295)
Q Consensus 132 ~~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~ 172 (295)
.+..+.+++. ..+..+-+.-.| .+.++|++-.+.+++.
T Consensus 86 i~la~~a~~~---Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~ 125 (290)
T TIGR00683 86 VELGKYATEL---GYDCLSAVTPFYYKFSFPEIKHYYDTIIAE 125 (290)
T ss_pred HHHHHHHHHh---CCCEEEEeCCcCCCCCHHHHHHHHHHHHhh
Confidence 3333333332 222222222222 2468888888888764
No 48
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=38.78 E-value=90 Score=24.03 Aligned_cols=42 Identities=17% Similarity=0.064 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
.=.+.+.+++..|.+.+++.|.+=.+++.++.=+.+++..+|
T Consensus 77 ~L~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 77 ALESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 345556667777888999999999999999999999988765
No 49
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=37.50 E-value=3e+02 Score=26.25 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=33.0
Q ss_pred hCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHH
Q psy16152 113 EKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILID 171 (295)
Q Consensus 113 ~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~ 171 (295)
..+.+|-++-+.+.+..+-.+++-++-+....++ +-|+++.+. +.+.-++++=|+
T Consensus 104 ~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~---~fiL~t~~~-~~ll~TI~SRc~ 158 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDT---VLLLISHQP-SRLLPTIKSRCQ 158 (328)
T ss_pred cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCe---EEEEEECCh-hhCcHHHHhhce
Confidence 4567899999899999988887776555444332 222333332 225555554444
No 50
>PRK14976 5'-3' exonuclease; Provisional
Probab=37.42 E-value=59 Score=30.43 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=31.9
Q ss_pred HHHHhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhh-----HHHHHHHHHHHHhcCCCeEEE
Q psy16152 16 IIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKG-----FDKLAETLQWCLDLGVREVTV 75 (295)
Q Consensus 16 ~~~~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g-----~~~l~~ii~wc~~~GI~~lTv 75 (295)
+.+.+.. --|.|++|+.|+.+.-=|..=.+...+++.. ...+..+-+++..+||+.+..
T Consensus 46 l~~ll~~-~~p~~~~v~fD~~~~~~R~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~ 109 (281)
T PRK14976 46 IFKILKK-LNPSYILIAFDAGRKTFRHQLYDEYKQGRKKTPESLISQIPLLKKILKLAGIKWEEQ 109 (281)
T ss_pred HHHHHHh-cCCCEEEEEEECCCCcccccccHHHhcCCCCCCHHHHHHHHHHHHHHHHCCCCEEec
Confidence 3344432 3599999999985432122223333333322 222444445666789988863
No 51
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=37.39 E-value=3.4e+02 Score=25.13 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-..+.+.++++|+.+.||.-|.+..-++|-+.-+.+|-..+.+...+.. ..++.| +.|=.. .+.
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~-----------~~~~pv-i~gv~~----~t~ 81 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEET-----------AGRVPV-LAGAGY----GTA 81 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHh-----------CCCCCE-EEecCC----CHH
Confidence 4578899999999999999999999999999999999998876654432 112322 222211 223
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDG 172 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~ 172 (295)
++++.+....+...+..+-+.-.| -+.++|.+-.+.+++.
T Consensus 82 ~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~ 123 (289)
T cd00951 82 TAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKS 123 (289)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhc
Confidence 333333322222223333232223 3678888888888775
No 52
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=37.35 E-value=3.3e+02 Score=24.91 Aligned_cols=105 Identities=14% Similarity=0.237 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-..+.+.++++|+.+.||.-|.+-..++|.+.-+.+|-..+++...+... ..+.| +.|=.. .++.
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~-----------~~~~v-i~gv~~---~~~~ 82 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN-----------GRVPV-IAGTGS---NNTA 82 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EeccCC---ccHH
Confidence 35688999999999999999999999999999999999988776654321 11211 233221 1233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDG 172 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~ 172 (295)
++++.+.......-+..+-+.-.| -+.+++++-.+.+++.
T Consensus 83 ~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~ 124 (284)
T cd00950 83 EAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA 124 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc
Confidence 344433333222222222222223 2578999999998885
No 53
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=36.65 E-value=1.1e+02 Score=24.12 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEE
Q psy16152 13 QYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTV 75 (295)
Q Consensus 13 ~~~~~~~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTv 75 (295)
+..+.......+-+..|.+..|++- -++.+.++++-|.++|+..+++
T Consensus 79 ~~~l~~~~~~~~~~~~v~i~aD~~~----------------~y~~vv~vl~~l~~~g~~~v~l 125 (130)
T PF02472_consen 79 EARLKELKQKNPDPVRVLIRADKDA----------------PYQDVVDVLDALREAGFTKVSL 125 (130)
T ss_dssp HHHHHHHCCC-TTS--EEEEE-TTS-----------------HHHHHHHHHHHHHTT---EE-
T ss_pred HHHHHHhhccCCCcceEEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEE
Confidence 3344444433332336888888884 4688999999999999999984
No 54
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=35.79 E-value=1e+02 Score=24.89 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=0.0
Q ss_pred hhhHHhcCCchhHhHHhh--------HHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy16152 37 RRYAKRSNAKTIEGHSKG--------FDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEK 108 (295)
Q Consensus 37 rR~A~~~g~~~~~Gh~~g--------~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~ 108 (295)
+.||.++|.+...-|..- -..+.+++..+..-.+..|-|+..+. +.|+..|+..++..+..
T Consensus 25 ~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~R--l~R~~~~~~~~~~~l~~--------- 93 (148)
T smart00857 25 RAYAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDR--LGRSLRDLLALLELLEK--------- 93 (148)
T ss_pred HHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccch--hhCcHHHHHHHHHHHHH---------
Q ss_pred hhhhhCCcEEEEecc
Q psy16152 109 DKLNEKGIRIRIIGN 123 (295)
Q Consensus 109 ~~~~~~~i~ir~iGd 123 (295)
.||+|.++.+
T Consensus 94 -----~gi~l~~~~~ 103 (148)
T smart00857 94 -----KGVRLVSVTE 103 (148)
T ss_pred -----CCCEEEECcC
No 55
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=35.68 E-value=3.3e+02 Score=24.55 Aligned_cols=65 Identities=22% Similarity=0.356 Sum_probs=40.8
Q ss_pred hHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEec
Q psy16152 50 GHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIG 122 (295)
Q Consensus 50 Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iG 122 (295)
.....++.+.+.++.|.++|++.+.+..-+.. ..+.+ .-+..+.+.+.+++. ...+.||++.+-.
T Consensus 79 ~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~--~~~~~---~~~~~~~~~l~~l~~---~a~~~gi~l~lEn 143 (279)
T cd00019 79 KREKSIERLKDEIERCEELGIRLLVFHPGSYL--GQSKE---EGLKRVIEALNELID---KAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCCCCC--CCCHH---HHHHHHHHHHHHHHH---hccCCCCEEEEeC
Confidence 45678999999999999999999887442211 11222 223344455555543 3457788877644
No 56
>KOG4388|consensus
Probab=35.58 E-value=1.7e+02 Score=30.92 Aligned_cols=58 Identities=29% Similarity=0.362 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCeEEE-EeecCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCC
Q psy16152 61 TLQWCLDLGVREVTV-YAFSIEN-FKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIE 125 (295)
Q Consensus 61 ii~wc~~~GI~~lTv-Y~fS~eN-~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~ 125 (295)
+-.|+.++|.+.||| |.+..|| |-|.-+||-+-+--+.. +...+.-.|=||...||..
T Consensus 419 Lr~Wa~aL~cPiiSVdYSLAPEaPFPRaleEv~fAYcW~in-------n~allG~TgEriv~aGDSA 478 (880)
T KOG4388|consen 419 LRSWAQALGCPIISVDYSLAPEAPFPRALEEVFFAYCWAIN-------NCALLGSTGERIVLAGDSA 478 (880)
T ss_pred HHHHHHHhCCCeEEeeeccCCCCCCCcHHHHHHHHHHHHhc-------CHHHhCcccceEEEeccCC
Confidence 458999999999999 9999999 99999999765443322 2223334455788888854
No 57
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=34.87 E-value=97 Score=31.02 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=39.0
Q ss_pred hHHHHHHHHHH--HHhcCCCeEEE-EeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHH
Q psy16152 54 GFDKLAETLQW--CLDLGVREVTV-YAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSD 130 (295)
Q Consensus 54 g~~~l~~ii~w--c~~~GI~~lTv-Y~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~ 130 (295)
+......+++- +.+.||+.||+ |+-.+ |...+-+-|..|-.+..+++.++- +.+-.|.+.+.-..-.+|.+
T Consensus 186 sisiav~ilE~Lla~eqGVksiSv~Y~Q~g-n~~QDiaAi~aLr~L~~eyL~~~g-----~~dv~i~tV~hqwMG~FP~d 259 (441)
T PF06368_consen 186 SISIAVSILEALLAAEQGVKSISVGYAQQG-NLIQDIAAIRALRELAAEYLPKYG-----YKDVEITTVFHQWMGGFPQD 259 (441)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEEEE--S--HHHHHHHHHHHHHHHHHHHHHTT-------S-EEEEEEE---S---SS
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEecccccC-ChHHHHHHHHHHHHHHHHHHHhcC-----CCCeEEEEEEeeecCCCCCC
Confidence 45566667765 45669999999 99887 777667777777777777765431 12223344333344467777
Q ss_pred HHHH
Q psy16152 131 LIAS 134 (295)
Q Consensus 131 ~~~~ 134 (295)
-..+
T Consensus 260 ~~~A 263 (441)
T PF06368_consen 260 EAKA 263 (441)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 5544
No 58
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=34.69 E-value=4.3e+02 Score=25.82 Aligned_cols=95 Identities=17% Similarity=0.133 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHhc-CCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHH
Q psy16152 53 KGFDKLAETLQWCLDL-GVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDL 131 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~-GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~ 131 (295)
...+.+.++|+...+. |++.+++.-+-+|-+-++..-...+.++++++ ....++.+.+..+...|.++.
T Consensus 48 ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~----------~~~~~i~~~i~TNG~ll~~e~ 117 (412)
T PRK13745 48 MSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKY----------ARGRQIDNCIQTNGTLLTDEW 117 (412)
T ss_pred CCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHH----------cCCCceEEEEeecCEeCCHHH
Confidence 5678888888887764 77887765556888877654333333332221 234567777888888898877
Q ss_pred HHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHH
Q psy16152 132 IASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSR 167 (295)
Q Consensus 132 ~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r 167 (295)
.+.+.+. + +.|.+|-||-+++.+..|
T Consensus 118 ~~~l~~~--------~--~~v~ISlDG~~~~hD~~R 143 (412)
T PRK13745 118 CEFFREN--------N--FLVGVSIDGPQEFHDEYR 143 (412)
T ss_pred HHHHHHc--------C--eEEEEEecCCHHHhhhhc
Confidence 6544321 1 256667677666555444
No 59
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=34.07 E-value=39 Score=29.94 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=21.6
Q ss_pred CEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHh
Q psy16152 27 KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLD 67 (295)
Q Consensus 27 ~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~ 67 (295)
-|||.|+|+++ -.|+.++.++++|+..
T Consensus 87 ~hIaYiP~~~~--------------ViGLSKl~RiV~~~ar 113 (188)
T PLN03044 87 IHVGYIPNAGV--------------ILGLSKLARIAEVYAR 113 (188)
T ss_pred EEEEEECCCCc--------------cccHHHHHHHHHHHhc
Confidence 69999997332 4799999999999653
No 60
>TIGR00593 pola DNA polymerase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.93 E-value=1.6e+02 Score=32.19 Aligned_cols=73 Identities=18% Similarity=0.246 Sum_probs=38.9
Q ss_pred HHHHhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhh-HHHHHHHHHHHH----hcCCCeEEEEeecCCCCCCCHHHH
Q psy16152 16 IIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKG-FDKLAETLQWCL----DLGVREVTVYAFSIENFKRTEEEV 90 (295)
Q Consensus 16 ~~~~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g-~~~l~~ii~wc~----~~GI~~lTvY~fS~eN~~R~~~Ev 90 (295)
+.+.+... -|.||+|+.|+.+.-=|..=.+...+++.. -+.+..-+.++. .+||+.+..-. -|-
T Consensus 40 l~~ll~~~-~p~~i~v~FD~~~~tfR~~~~~~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~i~~~g----------~EA 108 (887)
T TIGR00593 40 LLKLLKEE-KPTYVAVAFDSGTPTFRHEAYAEYKANRAPTPEELIEQIPLIKELLDALGIPILEVEG----------YEA 108 (887)
T ss_pred HHHHHHhc-CCCEEEEEEcCCCCcchHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHCCCcEEeeCC----------ccH
Confidence 34444432 599999999986521122222233333322 334554455554 58998887433 345
Q ss_pred HHHHHHHHH
Q psy16152 91 NGLMDLARA 99 (295)
Q Consensus 91 ~~L~~l~~~ 99 (295)
++++..+..
T Consensus 109 DDiIatla~ 117 (887)
T TIGR00593 109 DDVIATLAK 117 (887)
T ss_pred HHHHHHHHH
Confidence 555555444
No 61
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=33.74 E-value=2e+02 Score=26.62 Aligned_cols=103 Identities=18% Similarity=0.266 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHhhhhhCCcEEE---Eec-cCC
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDL---ARAKFKRLIEEKDKLNEKGIRIR---IIG-NIE 125 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l---~~~~l~~~~~~~~~~~~~~i~ir---~iG-d~~ 125 (295)
.|+.+ .+.++|..+.+|+.+++ +|-++| +-+..++.+ .++|+..+ ..+.++|++|. .+| +.-
T Consensus 95 vGfvd-E~~~eklk~~~vdvvsL-DfvgDn-----~vIk~vy~l~ksv~dyl~~l----~~L~e~~irvvpHitiGL~~g 163 (275)
T COG1856 95 VGFVD-ESDLEKLKEELVDVVSL-DFVGDN-----DVIKRVYKLPKSVEDYLRSL----LLLKENGIRVVPHITIGLDFG 163 (275)
T ss_pred eeecc-HHHHHHHHHhcCcEEEE-eecCCh-----HHHHHHHcCCccHHHHHHHH----HHHHHcCceeceeEEEEeccC
Confidence 45555 67889999999999986 455565 556666666 55555443 45677888753 344 333
Q ss_pred CCCHHHHHHHHHHHHhccCCCceEEEEEecCCCH----------HHHHHHHHHH
Q psy16152 126 LLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSR----------DEMVETSRIL 169 (295)
Q Consensus 126 ~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr----------~eIv~a~r~l 169 (295)
.+..+. ++++-+. ...-.-+.|++++++-|. +|++.+.+..
T Consensus 164 ki~~e~-kaIdiL~--~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~A 214 (275)
T COG1856 164 KIHGEF-KAIDILV--NYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYA 214 (275)
T ss_pred cccchH-HHHHHHh--cCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHH
Confidence 444443 2332221 122345899999998874 4555555543
No 62
>smart00281 LamB Laminin B domain.
Probab=33.52 E-value=58 Score=26.63 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=37.5
Q ss_pred CCCcEEEeeCCCcccC-----CCchhhccceeEEEccCCCCC-----CCHHHHHHHHHHhhhhhhc
Q psy16152 198 PEPDLIIRTSGETRLS-----DFMLVQSKSSFLYFCHKLWPE-----FTAWNLINAVFAFQYDFYT 253 (295)
Q Consensus 198 PdPDLlIRtgGe~RLS-----gFL~WQ~~ytEl~f~~~lWp~-----f~~~df~~aL~~Y~~r~~R 253 (295)
..||++|. |+-.+|+ ...|.+...=++.|....|+. .+..||..+|.+-.....|
T Consensus 41 ~~pdViL~-G~~~~l~~~~~~~~~p~~~~~~~v~~~e~~~~~~~g~p~tr~~fm~vLanl~~i~IR 105 (127)
T smart00281 41 SAPDVILE-GNGLRISHPAEGPPLPDELTTVEVRFREENWQYFGGRPVTREDLMMVLANLTAILIR 105 (127)
T ss_pred CCCCEEEE-CCCeEEEEeecCCCCCCcceEEEEEEEecccCcCCCCCcCHHHHHHHHhCccEEEEE
Confidence 46899886 5555664 344544432267777777766 6789999999888777666
No 63
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=33.50 E-value=35 Score=29.98 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=21.5
Q ss_pred CEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHh
Q psy16152 27 KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLD 67 (295)
Q Consensus 27 ~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~ 67 (295)
-|||.|++|. -.|+.++.++++|+..
T Consensus 82 ~hVaYiP~~~---------------ViGLSKl~RiV~~~ar 107 (180)
T TIGR00063 82 AHVAYIPKDK---------------VIGLSKIARIVEFFAR 107 (180)
T ss_pred EEEEEecCCc---------------eecHHHHHHHHHHHhc
Confidence 6899999763 4799999999999654
No 64
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=32.96 E-value=18 Score=28.33 Aligned_cols=32 Identities=34% Similarity=0.401 Sum_probs=23.9
Q ss_pred cCCCHHHHHHHHHHHHHhhhhCCCCCCCCCHH
Q psy16152 155 SYTSRDEMVETSRILIDGLRTNKITNEDVTMD 186 (295)
Q Consensus 155 ~y~Gr~eIv~a~r~l~~~v~~~~l~~~dI~~~ 186 (295)
+.++..|+...++.|.+++..|++++|+++..
T Consensus 17 ~~~~qpe~~~~Vr~LV~~L~~~~i~~EeF~~~ 48 (92)
T smart00549 17 NDISQPEVAERVRTLVLGLVNGTITAEEFTSR 48 (92)
T ss_pred cCCCcchHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34455889999999999988887766665544
No 65
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.91 E-value=4.5e+02 Score=25.17 Aligned_cols=107 Identities=13% Similarity=0.246 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCC-CHHHH-HHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCC-----
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKR-TEEEV-NGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIE----- 125 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R-~~~Ev-~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~----- 125 (295)
.-+..+.+++.||.+.||+ ||-+|-+=+=- +..++ ..+...+.+.+.++ .....++||++-+..+.-
T Consensus 49 ~Nl~~l~~~L~~n~~~~I~---f~RisS~l~P~ash~~~~~~~~~~~~~~l~~i---G~~a~~~~iRLS~Hp~qfi~LnS 122 (312)
T TIGR00629 49 ANLRDTMKTLHWNIGHGIP---FYRFSSSIFPFASHPDVGYDLVTFAQKELREI---GELAKTHQHRLTFHPGQFTQFTS 122 (312)
T ss_pred HHHHHHHHHHHHHHHcCCc---EEecCccccCcCcCchhhhhHHHHHHHHHHHH---HHHHHHcCeEEEECCCccccCCC
Confidence 4578899999999999887 45565533211 11233 22333444444443 345778999988876531
Q ss_pred CCCHHHHHHHHHHHHhcc-------C----C-CceEEEEEecCCCHHHHHHH
Q psy16152 126 LLPSDLIASFKEAMHITK-------D----N-TEGFLNVAFSYTSRDEMVET 165 (295)
Q Consensus 126 ~lp~~~~~~~~~~e~~T~-------~----~-~~~~lni~~~y~Gr~eIv~a 165 (295)
.=|+-+.+++..++.... . . ..+++.+-..||+|.+-.+-
T Consensus 123 ~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~~gdk~~aler 174 (312)
T TIGR00629 123 PRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAFGNKDTTLAR 174 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcCCCCHHHHHHH
Confidence 124445556665553221 1 1 35556666667778874443
No 66
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=32.26 E-value=66 Score=26.75 Aligned_cols=35 Identities=37% Similarity=0.387 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeecCCC--C--CCCHHHHH
Q psy16152 56 DKLAETLQWCLDLGVREVTVYAFSIEN--F--KRTEEEVN 91 (295)
Q Consensus 56 ~~l~~ii~wc~~~GI~~lTvY~fS~eN--~--~R~~~Ev~ 91 (295)
=++.++-+++.++|...|.-|-=|+ | | .++++++.
T Consensus 19 i~MaeLr~~l~~~Gf~~V~Tyi~SG-Nvvf~~~~~~~~l~ 57 (137)
T PF08002_consen 19 IKMAELREALEDLGFTNVRTYIQSG-NVVFESDRDPAELA 57 (137)
T ss_dssp --HHHHHHHHHHCT-EEEEEETTTT-EEEEEESS-HHHHH
T ss_pred ccHHHHHHHHHHcCCCCceEEEeeC-CEEEecCCChHHHH
Confidence 3477788889999999999999888 8 3 34445444
No 67
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=31.92 E-value=1.9e+02 Score=23.91 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 54 GFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 54 g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
..+.+.++++|+.+.|+..++++.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~i~~~~~~p 191 (216)
T smart00729 165 TEEDFEETLKLLKELGPDRVSIFPLSP 191 (216)
T ss_pred CHHHHHHHHHHHHHcCCCeEEeeeeee
Confidence 346677777777777777777766654
No 68
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=31.89 E-value=39 Score=30.10 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=20.7
Q ss_pred CEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHH
Q psy16152 27 KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCL 66 (295)
Q Consensus 27 ~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~ 66 (295)
-|||.|+||. -.|+.++++++++..
T Consensus 96 ahVAYiP~gk---------------V~GlSKiaRiV~~~a 120 (195)
T COG0302 96 AHVAYIPDGK---------------VIGLSKIARIVDIFA 120 (195)
T ss_pred EEEEEcCCCc---------------eecHHHHHHHHHHHh
Confidence 6999999765 369999999999843
No 69
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=31.61 E-value=4.2e+02 Score=24.48 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHh-cCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q psy16152 53 KGFDKLAETLQWCLD-LGVREVTVYAFSIENFKRTEEEVNGLMDLARAK 100 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~-~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~ 100 (295)
-..+.+.++++|+.+ .||.-|.+-..++|.+.-+.+|-..+++...+.
T Consensus 21 iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~ 69 (293)
T PRK04147 21 IDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEE 69 (293)
T ss_pred cCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 347889999999999 999999999999999999999999887766543
No 70
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=31.14 E-value=1.5e+02 Score=29.96 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHH--HHhcCCCeEEE-EeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCH
Q psy16152 53 KGFDKLAETLQW--CLDLGVREVTV-YAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPS 129 (295)
Q Consensus 53 ~g~~~l~~ii~w--c~~~GI~~lTv-Y~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~ 129 (295)
.++.....+++- +.+.||+.||+ |+-.+ |...+-+-+..|-.+..+|+.++- +.+-.|...+.-..-.+|.
T Consensus 224 Psisiav~ilE~Lla~eqGVksisvgy~Q~G-n~~QDiaai~aL~~l~~eYl~~~g-----~~Dv~i~tV~hqwMG~FP~ 297 (480)
T TIGR01503 224 PSISNAIGIIEGLLAAEQGVKNITVGYGQVG-NLTQDIAALRALEEQTNEYLKAYG-----YNDVFVTTVFHQWMGGFPE 297 (480)
T ss_pred hHHHHHHHHHHHHHHHHcCCeEEEeccccCC-ChHHHHHHHHHHHHHHHHHHHhCC-----CCceEEEEEeeeccCCCCC
Confidence 345666667765 55669999999 88777 877777777777777777765431 1222223333323335777
Q ss_pred HHHHH
Q psy16152 130 DLIAS 134 (295)
Q Consensus 130 ~~~~~ 134 (295)
+-..+
T Consensus 298 d~~~A 302 (480)
T TIGR01503 298 DESKA 302 (480)
T ss_pred Chhhh
Confidence 75544
No 71
>smart00475 53EXOc 5'-3' exonuclease.
Probab=31.12 E-value=64 Score=29.83 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=26.9
Q ss_pred CCCEEEEEEcCChhhHHhcCCchhHhHHhh-----HHHHHHHHHHHHhcCCCeEEE
Q psy16152 25 VPKHIAFIMDGNRRYAKRSNAKTIEGHSKG-----FDKLAETLQWCLDLGVREVTV 75 (295)
Q Consensus 25 iP~HIavImDGnrR~A~~~g~~~~~Gh~~g-----~~~l~~ii~wc~~~GI~~lTv 75 (295)
-|.|++++.|+.+.-=|..=.+...+++.- ...+..+-+.+..+||+.+..
T Consensus 48 ~p~~~~~~fD~~~~~~R~~l~p~YKa~R~~~pe~L~~q~~~~~~~l~~~gi~~i~~ 103 (259)
T smart00475 48 KPTYVAVVFDAKGKTFRHELYPEYKANRPKTPDELLEQIPLIKELLDALGIPVLEV 103 (259)
T ss_pred CCCeEEEEEeCCCCccccchhHHHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEEee
Confidence 599999999984321122212222233221 122333444555789988773
No 72
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=30.86 E-value=1.3e+02 Score=28.36 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAK 100 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~ 100 (295)
-.++.+.++++|..+.||.-|-+...++|...-+.+|-..+++...+.
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~ 69 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEA 69 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999887776554
No 73
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=30.83 E-value=46 Score=29.48 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=21.9
Q ss_pred CEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhc
Q psy16152 27 KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDL 68 (295)
Q Consensus 27 ~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~ 68 (295)
-|||.|+||. -.|+.++.++++|+..-
T Consensus 90 ~hIaYiP~~~---------------ViGLSKl~Riv~~~arR 116 (188)
T PRK09347 90 AHVAYIPKGK---------------VIGLSKIARIVDFFARR 116 (188)
T ss_pred EEEEEeCCCc---------------cccHHHHHHHHHHHHcC
Confidence 6899999654 47999999999997643
No 74
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=30.82 E-value=4.3e+02 Score=26.15 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
...+.+.+.++++.++|+..|++|.++.
T Consensus 215 qt~e~~~~tl~~~~~l~~~~is~y~L~~ 242 (455)
T TIGR00538 215 QTKESFAKTLEKVAELNPDRLAVFNYAH 242 (455)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCcc
Confidence 3578899999999999999999999864
No 75
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=30.72 E-value=39 Score=29.81 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=21.2
Q ss_pred CEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHh
Q psy16152 27 KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLD 67 (295)
Q Consensus 27 ~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~ 67 (295)
-|||.|+||. -.|+.++.++++|+..
T Consensus 87 ~~VaYiP~~~---------------ViGLSKl~RiV~~~ar 112 (185)
T cd00642 87 VHIAYIPKDK---------------VIGLSKLARIVEFFSR 112 (185)
T ss_pred EEEEEecCCe---------------eeeHHHHHHHHHHHhc
Confidence 5899999654 4799999999999754
No 76
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=29.92 E-value=5.4e+02 Score=26.72 Aligned_cols=126 Identities=19% Similarity=0.301 Sum_probs=68.6
Q ss_pred CCCCCEEEEEEcCChhhHHhcC--------CchhHhHHhhHHHHHHHHHHHHhcCCCeE-EEEeecCCCCCCCHHHHHHH
Q psy16152 23 GHVPKHIAFIMDGNRRYAKRSN--------AKTIEGHSKGFDKLAETLQWCLDLGVREV-TVYAFSIENFKRTEEEVNGL 93 (295)
Q Consensus 23 ~~iP~HIavImDGnrR~A~~~g--------~~~~~Gh~~g~~~l~~ii~wc~~~GI~~l-TvY~fS~eN~~R~~~Ev~~L 93 (295)
+-.|.-+.++..- | =-|-+| -+..+.-..|+.+|.+.++-+..+||+.+ .+--|.++ +.+|++.+
T Consensus 320 gl~P~~~VlVaTv-r-aLK~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~D----Te~Ei~~I 393 (557)
T PRK13505 320 GLKPDAVVIVATV-R-ALKMHGGVAKDDLKEENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTD----TDAEIAAL 393 (557)
T ss_pred CCCCCEEEEEeeh-H-HHHHcCCCChhhccccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC----CHHHHHHH
Confidence 3457666666532 1 123333 23446677899999999999999999984 44445553 34577755
Q ss_pred HHHHHHHHHHHHHHHhhhhhCCcEEEEec---cCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHH
Q psy16152 94 MDLARAKFKRLIEEKDKLNEKGIRIRIIG---NIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILI 170 (295)
Q Consensus 94 ~~l~~~~l~~~~~~~~~~~~~~i~ir~iG---d~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~ 170 (295)
.+.. .+.|+.+-++- +...=-.++.+.+-++.+ ....+ +-.-|...+.+.+.++.++
T Consensus 394 ~~~c--------------~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~--~~~s~----f~~lY~~d~sl~eKIe~IA 453 (557)
T PRK13505 394 KELC--------------EELGVEVALSEVWAKGGEGGVELAEKVVELIE--EGESN----FKPLYDDEDSLEEKIEKIA 453 (557)
T ss_pred HHHH--------------HHcCCCEEEecccccCCcchHHHHHHHHHHHh--cCCCC----CceecCCCCcHHHHHHHHH
Confidence 3332 23566443211 111001122222222111 11122 2345888888888888888
Q ss_pred Hhhh
Q psy16152 171 DGLR 174 (295)
Q Consensus 171 ~~v~ 174 (295)
+++.
T Consensus 454 kkIY 457 (557)
T PRK13505 454 TKIY 457 (557)
T ss_pred HHcc
Confidence 8753
No 77
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=28.75 E-value=4.7e+02 Score=24.10 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHhc-CCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHH
Q psy16152 53 KGFDKLAETLQWCLDL-GVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDL 131 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~-GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~ 131 (295)
-..+.+.++++|+.+. |+.-|.+-..++|-+.-+.+|-..+++...+.. ...+.| +.|=... ++
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~-----------~~~~~v-iagv~~~---~~ 82 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAA-----------KGKVTL-IAHVGSL---NL 82 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHh-----------CCCCeE-EeccCCC---CH
Confidence 4568899999999999 999999999999999999999988876654432 112222 2332211 22
Q ss_pred HHHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 132 IASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 132 ~~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
.++++.+...-+...+..+-+.-.| -+.++|.+=.+.+++.+
T Consensus 83 ~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 83 KESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 2333333332222233333222223 25688888888888754
No 78
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=28.47 E-value=1.4e+02 Score=24.81 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 55 FDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 55 ~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
.....+.+..|.+.|++.|+|=++|+.++.-|+++...+|
T Consensus 93 ~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~ 132 (140)
T cd02905 93 YSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIA 132 (140)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHH
Confidence 3455677888999999999999999999999999887654
No 79
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=28.14 E-value=4.6e+02 Score=24.44 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=31.7
Q ss_pred HHHHhcCCCeEEEEe-----ecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEec
Q psy16152 63 QWCLDLGVREVTVYA-----FSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIG 122 (295)
Q Consensus 63 ~wc~~~GI~~lTvY~-----fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iG 122 (295)
+.+.++|++.|.+|. |+..|++++.+|+-..+.-+.++ .+..|..+++.-
T Consensus 81 e~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~----------a~~~g~~v~~~~ 135 (279)
T cd07947 81 KLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEE----------ALDHGIKPRCHL 135 (279)
T ss_pred HHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHH----------HHHCCCeEEEEE
Confidence 456678999999984 23357899988876544333332 234566666655
No 80
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=28.07 E-value=1.4e+02 Score=23.21 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=26.4
Q ss_pred HhHHhhHHHHHHHHHHH-HhcCCCeEEEEeecC
Q psy16152 49 EGHSKGFDKLAETLQWC-LDLGVREVTVYAFSI 80 (295)
Q Consensus 49 ~Gh~~g~~~l~~ii~wc-~~~GI~~lTvY~fS~ 80 (295)
.|...|.+.+..++.|+ ..+|+..|.++..+.
T Consensus 96 ~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~ 128 (142)
T PF13302_consen 96 RGKGYGTEALKLLLDWAFEELGLHRIIATVMAD 128 (142)
T ss_dssp TTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcC
Confidence 34555789999999999 588999999988764
No 81
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=28.03 E-value=5e+02 Score=24.21 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARA 99 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~ 99 (295)
-..+.+.++++|..+.||.-|.+..-++|-+.-+.+|-..+++...+
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~ 71 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVE 71 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999888766544
No 82
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=27.67 E-value=49 Score=27.14 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=24.0
Q ss_pred ecCCCHHHHHHHHHHHHHh-hhhCCCCCCCC
Q psy16152 154 FSYTSRDEMVETSRILIDG-LRTNKITNEDV 183 (295)
Q Consensus 154 ~~y~Gr~eIv~a~r~l~~~-v~~~~l~~~dI 183 (295)
+.-+.+++|..|+++|.++ ++.|+++++||
T Consensus 10 v~~nt~e~I~~at~eLl~~ii~~N~l~~edi 40 (117)
T TIGR01796 10 VERNEAEEIGEAVAELLTELMERNELTPEDL 40 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 4678899999999999866 56777777764
No 83
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=27.10 E-value=46 Score=29.26 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=20.2
Q ss_pred CEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhc
Q psy16152 27 KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDL 68 (295)
Q Consensus 27 ~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~ 68 (295)
-|||.|+||. -.|..++.++++|+..-
T Consensus 82 ~~VaYiP~~~---------------viGLSKl~RiV~~~arR 108 (179)
T PF01227_consen 82 AHVAYIPGGR---------------VIGLSKLARIVDFFARR 108 (179)
T ss_dssp EEEEEE-SSE---------------EE-HHHHHHHHHHHHSS
T ss_pred EEEEEEeCCc---------------ccChhHHHHHHHHHhcC
Confidence 5899999665 37999999999997643
No 84
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=27.05 E-value=51 Score=27.04 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=24.3
Q ss_pred ecCCCHHHHHHHHHHHHHh-hhhCCCCCCCCC
Q psy16152 154 FSYTSRDEMVETSRILIDG-LRTNKITNEDVT 184 (295)
Q Consensus 154 ~~y~Gr~eIv~a~r~l~~~-v~~~~l~~~dI~ 184 (295)
+.-+.+++|..|+++|.++ ++.++++++||-
T Consensus 10 v~~nt~e~I~~at~eLl~~i~~~N~l~~ediv 41 (117)
T cd02185 10 VEENTAEEILEATRELLEEIIERNNIKPEDII 41 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEE
Confidence 4678899999999999866 467777777643
No 85
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=26.60 E-value=5.9e+02 Score=26.24 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=64.4
Q ss_pred chhHhHHhhHHHHHHHHHHHHhcCCCe-EEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccC
Q psy16152 46 KTIEGHSKGFDKLAETLQWCLDLGVRE-VTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNI 124 (295)
Q Consensus 46 ~~~~Gh~~g~~~l~~ii~wc~~~GI~~-lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~ 124 (295)
+..+.-.+|+..|.+.++-...+|++. |.+-.|+++ +.+|++.+.+..+ +.|+.+-++---
T Consensus 333 en~~al~~G~~NL~~Hi~n~~~fg~p~VVaiN~F~~D----t~~Ei~~v~~~~~--------------~~g~~~~~~~~~ 394 (524)
T cd00477 333 ENLEALEKGFANLRKHIENIKKFGVPVVVAINKFSTD----TDAELALVRKLAE--------------EAGAFVAVSEHW 394 (524)
T ss_pred cCHHHHHhHHHHHHHHHHHHHHcCCCeEEEecCCCCC----CHHHHHHHHHHHH--------------HcCCCEEEehhh
Confidence 345678899999999999999999998 555667775 6888887665432 345555444111
Q ss_pred CCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhh
Q psy16152 125 ELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGL 173 (295)
Q Consensus 125 ~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v 173 (295)
..=-+--.+..+.+.+....... +-.-|+-.+.|.+-++.+|+++
T Consensus 395 ~~GG~Ga~eLA~~Vi~a~e~~s~----fk~LY~~~~si~eKIetIAk~I 439 (524)
T cd00477 395 AEGGKGAVELAEAVIEACEQPSE----FKFLYDLEDPLEDKIETIAKKI 439 (524)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCC----CccccCCCCCHHHHHHHHHHHc
Confidence 11111111222222222222222 2345888888888888888765
No 86
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=26.59 E-value=3e+02 Score=22.41 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEecc
Q psy16152 56 DKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGN 123 (295)
Q Consensus 56 ~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd 123 (295)
..+.+++.-+.+-.|..|-|+.++ -+.|+..+...+++.+ ..+.||+|.++.+
T Consensus 55 p~l~~ll~~~~~g~vd~vvv~~ld--Rl~R~~~d~~~~~~~l-------------~~~~gv~l~~~~~ 107 (140)
T cd03770 55 PGFNRMIEDIEAGKIDIVIVKDMS--RLGRNYLKVGLYMEIL-------------FPKKGVRFIAIND 107 (140)
T ss_pred HHHHHHHHHHHcCCCCEEEEeccc--hhccCHHHHHHHHHHH-------------HhhcCcEEEEecC
Confidence 334444555556678988888765 4888765544333221 1224898888764
No 87
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=26.30 E-value=71 Score=28.19 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.3
Q ss_pred HHHHHHhcCCCeEEEEeec---CCCCCCC
Q psy16152 61 TLQWCLDLGVREVTVYAFS---IENFKRT 86 (295)
Q Consensus 61 ii~wc~~~GI~~lTvY~fS---~eN~~R~ 86 (295)
+..++...||..|+++|+. ..|+.|.
T Consensus 36 ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq 64 (200)
T TIGR02354 36 VAINLARAGIGKLILVDFDVVEPSNLNRQ 64 (200)
T ss_pred HHHHHHHcCCCEEEEECCCEEcccccccc
Confidence 5567788899999999998 8899885
No 88
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=25.78 E-value=5.8e+02 Score=24.24 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHh-cCCCeEEEEeecCCCCCCCHHHHHHHHH
Q psy16152 55 FDKLAETLQWCLD-LGVREVTVYAFSIENFKRTEEEVNGLMD 95 (295)
Q Consensus 55 ~~~l~~ii~wc~~-~GI~~lTvY~fS~eN~~R~~~Ev~~L~~ 95 (295)
.+.+.+++++..+ -||+.|.+.. +|-+-++.+.+..+++
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPLl~~d~~L~~ll~ 183 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPLMAKDHELEWLLK 183 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--CccccCCHHHHHHHHH
Confidence 5778888888765 4899998554 4556665544444443
No 89
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=25.71 E-value=5.3e+02 Score=23.70 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=50.0
Q ss_pred HHHHHhcCCCeEEEEee-c----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEec-cCCCCC-HHHHHH
Q psy16152 62 LQWCLDLGVREVTVYAF-S----IENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIG-NIELLP-SDLIAS 134 (295)
Q Consensus 62 i~wc~~~GI~~lTvY~f-S----~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iG-d~~~lp-~~~~~~ 134 (295)
++.+.+.|++.|.+|.- | ..|++++.+|.-... .+.++ ..++.|+.|++.. +-..-| +.+.+.
T Consensus 77 i~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~---~~~i~-------~a~~~G~~v~~~~eda~r~~~~~l~~~ 146 (262)
T cd07948 77 ARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESA---VEVIE-------FVKSKGIEVRFSSEDSFRSDLVDLLRV 146 (262)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHH---HHHHH-------HHHHCCCeEEEEEEeeCCCCHHHHHHH
Confidence 45667789999888752 2 257788887753322 22221 2334567776665 334445 445444
Q ss_pred HHHHHHhccCCCceEEEEEecCC--CHHHHHHHHHHH
Q psy16152 135 FKEAMHITKDNTEGFLNVAFSYT--SRDEMVETSRIL 169 (295)
Q Consensus 135 ~~~~e~~T~~~~~~~lni~~~y~--Gr~eIv~a~r~l 169 (295)
++.+.+... -.|+++-..| --+++.+.++.+
T Consensus 147 ~~~~~~~g~----~~i~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 147 YRAVDKLGV----NRVGIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred HHHHHHcCC----CEEEECCcCCCCCHHHHHHHHHHH
Confidence 444444322 2456665444 344555555444
No 90
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=25.69 E-value=3.5e+02 Score=21.61 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEee
Q psy16152 8 TLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAF 78 (295)
Q Consensus 8 ~~~~~~~~~~~~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~f 78 (295)
+....+..+...-.. .++-++|+|.-|++- ....-+......|.++||.+-. |.|
T Consensus 12 i~~~l~~~i~~l~~~-~~~P~Laii~vg~d~--------------~S~~Y~~~k~k~~~~~Gi~~~~-~~l 66 (117)
T PF00763_consen 12 IKEELKEEIEKLKEK-GITPKLAIILVGDDP--------------ASISYVRSKQKAAEKLGIEFEL-IEL 66 (117)
T ss_dssp HHHHHHHHHHHHHHC-T---EEEEEEES--H--------------HHHHHHHHHHHHHHHHT-EEEE-EEE
T ss_pred HHHHHHHHHHHHHhc-CCCcEEEEEecCCCh--------------hHHHHHHHHHHHHHHcCCceEE-EEC
Confidence 334444444444444 455699999999862 2233356677899999998754 444
No 91
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=25.47 E-value=6.9e+02 Score=26.13 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=63.3
Q ss_pred hhHhHHhhHHHHHHHHHHHHhcCCCeE-EEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCC
Q psy16152 47 TIEGHSKGFDKLAETLQWCLDLGVREV-TVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIE 125 (295)
Q Consensus 47 ~~~Gh~~g~~~l~~ii~wc~~~GI~~l-TvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~ 125 (295)
..+.-.+|+..|...++-...+|++.| .+-.|.++ +.+|++.+.+..+ +.|+.+.++---.
T Consensus 379 nl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~D----t~~Ei~~l~~~~~--------------~~g~~~~v~~~wa 440 (587)
T PRK13507 379 NVGLVEKGCANLLHHIGTVKKSGINPVVCINAFYTD----THAEIAIVRRLAE--------------QAGARVAVSRHWE 440 (587)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCC----CHHHHHHHHHHHH--------------HcCCCEEEechhh
Confidence 345778899999999999999999984 44556665 6788887655532 2455444432111
Q ss_pred CCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhh
Q psy16152 126 LLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGL 173 (295)
Q Consensus 126 ~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v 173 (295)
.=-+-..+..+.+.+..++... +-.-|+-.+.|.+-++.+|+++
T Consensus 441 ~GGeGa~eLA~~Vv~a~e~~s~----fk~LYd~~~sI~EKIetIAkeI 484 (587)
T PRK13507 441 KGGEGALELADAVIDACNEPND----FKFLYPLEMPLRERIETIAREV 484 (587)
T ss_pred ccchhHHHHHHHHHHHhhCcCC----CcccCCCCCCHHHHHHHHHHHc
Confidence 1112222222222222222222 2335888888888888888875
No 92
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=25.17 E-value=1.7e+02 Score=23.88 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 55 FDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 55 ~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
...+.+++.-+.+.|++.|.|=++++.++.-|++++...|
T Consensus 91 ~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~ 130 (137)
T cd02903 91 KDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIM 130 (137)
T ss_pred HHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHH
Confidence 3445667788889999999999999999999999987755
No 93
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.04 E-value=6.1e+02 Score=25.12 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
...+.+.+.++++.++|+..|++|.++.
T Consensus 216 qt~e~~~~tl~~~~~l~p~~i~~y~l~~ 243 (453)
T PRK13347 216 QTVESFRETLDKVIALSPDRIAVFGYAH 243 (453)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 3568899999999999999999999864
No 94
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=24.98 E-value=5.7e+02 Score=27.83 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=36.1
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhh
Q psy16152 114 KGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLR 174 (295)
Q Consensus 114 ~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~ 174 (295)
.+.+|-++-+.++|...-.+.|.+..+....+..+ |+.+ +--+.|..++++-|+.+.
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f---Il~t-t~~~kLl~TIrSRc~~v~ 175 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF---IFAT-TEPDKVIGTIRSRTHHYP 175 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE---EEEe-CChhhhhHHHHhheeEEE
Confidence 45689999999999999888777666554443322 2222 333447777776665443
No 95
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=24.65 E-value=4.2e+02 Score=24.80 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEeecCCCCCC-------------CHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEE
Q psy16152 54 GFDKLAETLQWCLDLGVREVTVYAFSIENFKR-------------TEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRI 120 (295)
Q Consensus 54 g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R-------------~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~ 120 (295)
..+...+.|+++.+.|++++-| + +-|.. +...+..|.+. -+++||.|-+
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlv-D---~GW~~~~~~~~~d~~~~~~~~dl~elv~Y--------------a~~KgVgi~l 91 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLV-D---AGWYGWEKDDDFDFTKPIPDFDLPELVDY--------------AKEKGVGIWL 91 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEE-B---TTCCGS--TTT--TT-B-TT--HHHHHHH--------------HHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEe-c---cccccccccccccccccCCccCHHHHHHH--------------HHHcCCCEEE
Confidence 4788999999999999999998 2 23531 22333333222 3457888877
Q ss_pred eccCCC------CCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCC
Q psy16152 121 IGNIEL------LPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNK 177 (295)
Q Consensus 121 iGd~~~------lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~ 177 (295)
...-.- +...+.+.+....+ -+-.++.+-+. -+..+++++--.++++++++-+
T Consensus 92 w~~~~~~~~~~~~~~~~~~~f~~~~~--~Gv~GvKidF~--~~d~Q~~v~~y~~i~~~AA~~~ 150 (273)
T PF10566_consen 92 WYHSETGGNVANLEKQLDEAFKLYAK--WGVKGVKIDFM--DRDDQEMVNWYEDILEDAAEYK 150 (273)
T ss_dssp EEECCHTTBHHHHHCCHHHHHHHHHH--CTEEEEEEE----SSTSHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCcchhhHhHHHHHHHHHHHHHH--cCCCEEeeCcC--CCCCHHHHHHHHHHHHHHHHcC
Confidence 776443 22222223322222 22345555543 3355678888888888765543
No 96
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=24.37 E-value=2e+02 Score=22.97 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHhcCCCeEEE
Q psy16152 54 GFDKLAETLQWCLDLGVREVTV 75 (295)
Q Consensus 54 g~~~l~~ii~wc~~~GI~~lTv 75 (295)
-++.+.++++.|..+|+..|++
T Consensus 96 ~~~~vv~v~d~~~~~G~~~v~l 117 (121)
T TIGR02804 96 KFQDFVTITDMLKAKEHENVQI 117 (121)
T ss_pred CHhHHHHHHHHHHHcCCCeEEE
Confidence 4688999999999999999986
No 97
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=24.26 E-value=7.2e+02 Score=24.78 Aligned_cols=97 Identities=15% Similarity=0.266 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHHhc-CCCeEEEEeecCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcE-EEEecc-----C
Q psy16152 53 KGFDKLAETLQWCLDL-GVREVTVYAFSIEN-FKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIR-IRIIGN-----I 124 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~-GI~~lTvY~fS~eN-~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~-ir~iGd-----~ 124 (295)
...+.+.+++++..+. +|+.|- ||+.. +-++.+-++.+++.+.+ + .+|+ ||+..+ .
T Consensus 138 ls~eei~~~i~yI~~~p~I~~Vl---LSGGDPLll~d~~L~~iL~~L~~-----------I--phV~~IRI~TR~pvv~P 201 (417)
T TIGR03820 138 PSKEQILEGIEYIRNTPQIRDVL---LSGGDPLLLSDDYLDWILTELRA-----------I--PHVEVIRIGTRVPVVLP 201 (417)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEE---EeCCccccCChHHHHHHHHHHhh-----------c--CCCceEEEeeccccccc
Confidence 3567888888888874 888876 77655 77776655544333221 1 1343 566555 2
Q ss_pred CCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhh
Q psy16152 125 ELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLR 174 (295)
Q Consensus 125 ~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~ 174 (295)
.++.+++.+.+.+. .. +-|.++.++-.||...+.+.++...
T Consensus 202 ~RIT~ell~~Lk~~-------~~--~~v~~h~nhp~Eit~~a~~Al~~L~ 242 (417)
T TIGR03820 202 QRITDELVAILKKH-------HP--VWLNTHFNHPREITASSKKALAKLA 242 (417)
T ss_pred cccCHHHHHHHHhc-------CC--eEEEEeCCChHhChHHHHHHHHHHH
Confidence 24444444443321 22 3444566776788766666655543
No 98
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=23.67 E-value=2.8e+02 Score=26.59 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=28.4
Q ss_pred HhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCC
Q psy16152 52 SKGFDKLAETLQWCLDLGVREVTVYAFSIENFKR 85 (295)
Q Consensus 52 ~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R 85 (295)
..|++|..+++..|.++|++-|||-+-++-....
T Consensus 134 p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~ 167 (316)
T TIGR00513 134 PEGYRKALRLMKMAERFKMPIITFIDTPGAYPGI 167 (316)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCH
Confidence 4678999999999999999999999977743333
No 99
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=23.52 E-value=2.7e+02 Score=22.33 Aligned_cols=23 Identities=9% Similarity=0.273 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEE
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTV 75 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTv 75 (295)
.-+..+.++++-|.++|+..+++
T Consensus 104 ~~~~~vv~vmd~~~~~G~~~v~l 126 (129)
T TIGR02801 104 VPYGEVIKVMALLKQAGIEKVGL 126 (129)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEE
Confidence 35688999999999999999986
No 100
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=23.41 E-value=1e+02 Score=22.57 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=20.9
Q ss_pred HhcCCchhHhHHhhHHHHHHHHHHHHhcCCC
Q psy16152 41 KRSNAKTIEGHSKGFDKLAETLQWCLDLGVR 71 (295)
Q Consensus 41 ~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~ 71 (295)
++ |+|..++| .-+.+++.+|.+.|+.
T Consensus 13 r~-GipFR~AH----~iVg~~V~~a~~~~~~ 38 (70)
T PF14698_consen 13 RK-GIPFREAH----HIVGRLVRLAEEEGKP 38 (70)
T ss_dssp HT-TS-HHHHH----HHHHHHHHHHHHTTS-
T ss_pred Hc-CCCHHHHH----HHHHHHHHHHHHcCCC
Confidence 45 99988888 7888999999999976
No 101
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=23.10 E-value=77 Score=28.41 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=21.1
Q ss_pred CEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHh
Q psy16152 27 KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLD 67 (295)
Q Consensus 27 ~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~ 67 (295)
-|||.|++|. -.|+.++.++++|+..
T Consensus 102 ~hVaYiP~~~---------------VvGLSKl~RiV~~~ar 127 (201)
T PRK12606 102 AHVAYLPGGK---------------VLGLSKIARIVDMFAR 127 (201)
T ss_pred EEEEEeCCCc---------------cccHHHHHHHHHHHhc
Confidence 6899999653 4799999999999653
No 102
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=22.82 E-value=3.2e+02 Score=23.02 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH-HHHHHHH
Q psy16152 55 FDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM-DLARAKF 101 (295)
Q Consensus 55 ~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~-~l~~~~l 101 (295)
......++.-+.+.|++.|.+=++++.++.=|+++....| +.+.+++
T Consensus 91 ~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl 138 (165)
T cd02908 91 ASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFL 138 (165)
T ss_pred HHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHH
Confidence 4556666777788999999999999999999999887654 4445544
No 103
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=22.63 E-value=1.2e+02 Score=28.15 Aligned_cols=31 Identities=16% Similarity=0.158 Sum_probs=27.4
Q ss_pred HhhHHHHHHHHHHHHhcCCCeEEEEeecCCC
Q psy16152 52 SKGFDKLAETLQWCLDLGVREVTVYAFSIEN 82 (295)
Q Consensus 52 ~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN 82 (295)
..|++|..++++.|.++|++-|||.+-++-.
T Consensus 81 ~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa~ 111 (256)
T PRK12319 81 PEGYRKALRLMKQAEKFGRPVVTFINTAGAY 111 (256)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCCcC
Confidence 4588999999999999999999999977743
No 104
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=22.54 E-value=39 Score=26.04 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=25.1
Q ss_pred HHHHHHHhcCC-CCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHH
Q psy16152 13 QYAIIKLLKKG-HVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWC 65 (295)
Q Consensus 13 ~~~~~~~l~~~-~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc 65 (295)
-|.+.+.|... .=| -.|++|..+||+ +|...||.-|...+.+.+.-.
T Consensus 25 vR~iap~l~dK~~DP--aVvvvde~g~~v----IplL~GH~GGan~lA~~iA~~ 72 (84)
T PF11760_consen 25 VRAIAPLLKDKDTDP--AVVVVDEDGRFV----IPLLGGHRGGANELARQIAEL 72 (84)
T ss_dssp HHHHHHH---TTT----EEEEE-TT--EE----EEEE-TTTT-HHHHHHHHHHH
T ss_pred HHHhChhhcccCCCC--CEEEEeCCCCEE----EEeccCCcchHHHHHHHHHHH
Confidence 34555666422 224 245588888876 689999998899988876543
No 105
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=22.54 E-value=1.4e+02 Score=23.94 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=25.3
Q ss_pred hHHhhHHHHHHHHHHH-HhcCCCeEEEEeecC
Q psy16152 50 GHSKGFDKLAETLQWC-LDLGVREVTVYAFSI 80 (295)
Q Consensus 50 Gh~~g~~~l~~ii~wc-~~~GI~~lTvY~fS~ 80 (295)
|...|-.-+..++.|+ .+.|++.|++..++.
T Consensus 90 ~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~ 121 (155)
T PF13420_consen 90 GKGIGRKLLDELIEYAFKELGIHKIYLEVFSS 121 (155)
T ss_dssp TSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT
T ss_pred CCcHHHHHHHHHHHHhhhccCeEEEEEEEecC
Confidence 3345778899999999 999999999999876
No 106
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=22.49 E-value=6.8e+02 Score=23.85 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
...+.+.++++-+.+.|+..|++.. +|-+-++. + +++++. +++.|+.+.+..+...+.++..
T Consensus 46 ~~~e~~~~ii~~~~~~g~~~v~~~G--GEPll~~~--~---~~il~~-----------~~~~g~~~~i~TNG~ll~~~~~ 107 (378)
T PRK05301 46 LSTEEWIRVLREARALGALQLHFSG--GEPLLRKD--L---EELVAH-----------ARELGLYTNLITSGVGLTEARL 107 (378)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEC--CccCCchh--H---HHHHHH-----------HHHcCCcEEEECCCccCCHHHH
Confidence 4567788899999999998888654 66666532 2 222211 2345677788888888888766
Q ss_pred HHHH
Q psy16152 133 ASFK 136 (295)
Q Consensus 133 ~~~~ 136 (295)
+.+.
T Consensus 108 ~~L~ 111 (378)
T PRK05301 108 AALK 111 (378)
T ss_pred HHHH
Confidence 5543
No 107
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=22.29 E-value=2.5e+02 Score=29.07 Aligned_cols=125 Identities=21% Similarity=0.313 Sum_probs=65.4
Q ss_pred CCCCCEEEEEEcCChhhHHhcC--------CchhHhHHhhHHHHHHHHHHHHhcCCCe-EEEEeecCCCCCCCHHHHHHH
Q psy16152 23 GHVPKHIAFIMDGNRRYAKRSN--------AKTIEGHSKGFDKLAETLQWCLDLGVRE-VTVYAFSIENFKRTEEEVNGL 93 (295)
Q Consensus 23 ~~iP~HIavImDGnrR~A~~~g--------~~~~~Gh~~g~~~l~~ii~wc~~~GI~~-lTvY~fS~eN~~R~~~Ev~~L 93 (295)
+-.|.-+.++..- | =-|-|| .+..+.-.+|+..|.+.++-...+|++. |.+-.|+++ +.+|++.+
T Consensus 319 gl~P~~~VlVaTv-R-ALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tD----T~aEi~~I 392 (557)
T PF01268_consen 319 GLKPDAVVLVATV-R-ALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTD----TDAEIELI 392 (557)
T ss_dssp T---SEEEEEEEH-H-HHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-----HHHHHHH
T ss_pred ccCcceEEEeeec-h-HHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCC----CHHHHHHH
Confidence 4457766666532 1 123332 2446688899999999999999999998 566678876 67888765
Q ss_pred HHHHHHHHHHHHHHHhhhhhCCcEEEEecc---CCCCCHHHHHHHHHHH-HhccCCCceEEEEEecCCCHHHHHHHHHHH
Q psy16152 94 MDLARAKFKRLIEEKDKLNEKGIRIRIIGN---IELLPSDLIASFKEAM-HITKDNTEGFLNVAFSYTSRDEMVETSRIL 169 (295)
Q Consensus 94 ~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd---~~~lp~~~~~~~~~~e-~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l 169 (295)
.+. +.+.|+++.++-- ...=-.++.+.+-++- + .... ++=.-|+-.+.|.+-++.+
T Consensus 393 ~~~--------------~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~ee--~~~~----~fk~LY~l~~sI~eKIe~I 452 (557)
T PF01268_consen 393 REL--------------CEELGVRAAVSEHWAKGGEGAVELAEAVVEACEE--EEPS----NFKPLYDLEDSIEEKIETI 452 (557)
T ss_dssp HHH--------------CCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-HH--HS----------SS-TTS-HHHHHHHH
T ss_pred HHH--------------HHhCCCCEEEechhhcccccHHHHHHHHHHHhhc--cCCC----CcCcccCCcccHHHHHHHH
Confidence 422 4557777544311 1011122333222221 1 1222 3345788888999999999
Q ss_pred HHhh
Q psy16152 170 IDGL 173 (295)
Q Consensus 170 ~~~v 173 (295)
|+++
T Consensus 453 A~eI 456 (557)
T PF01268_consen 453 ATEI 456 (557)
T ss_dssp HHHT
T ss_pred Hhhh
Confidence 8875
No 108
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=22.28 E-value=2e+02 Score=25.39 Aligned_cols=52 Identities=4% Similarity=0.064 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeec
Q psy16152 12 FQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFS 79 (295)
Q Consensus 12 ~~~~~~~~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS 79 (295)
|+..+.+.+...--|.+|.|++.+.+. -+.+.+.+.++.+.|++.|++=.+.
T Consensus 95 ~~~~f~~ql~~~~~~gDvli~iS~SG~----------------s~~v~~a~~~Ak~~G~~vI~IT~~~ 146 (196)
T PRK10886 95 HDEVYAKQVRALGHAGDVLLAISTRGN----------------SRDIVKAVEAAVTRDMTIVALTGYD 146 (196)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEeCCCC----------------CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 344444555444568899999877642 3779999999999999999975543
No 109
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=22.21 E-value=4.5e+02 Score=25.89 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
...+.+.+.++++.++|+..+++|.++.
T Consensus 205 qt~e~~~~~l~~~~~l~~~~is~y~L~~ 232 (430)
T PRK08208 205 QTHASWMESLDQALVYRPEELFLYPLYV 232 (430)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEccccc
Confidence 3568899999999999999999999764
No 110
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=22.13 E-value=4.2e+02 Score=26.61 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=27.9
Q ss_pred HHhhHHHHHHHHHHHHhcCCCeEEEEeecCCC
Q psy16152 51 HSKGFDKLAETLQWCLDLGVREVTVYAFSIEN 82 (295)
Q Consensus 51 h~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN 82 (295)
+..|+++..+++..|..+|++-|||-+-.+-.
T Consensus 203 ~peGyRKAlR~mklAekf~lPIVtLVDTpGA~ 234 (431)
T PLN03230 203 QPNGYRKALRFMRHAEKFGFPILTFVDTPGAY 234 (431)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcC
Confidence 45678999999999999999999999877743
No 111
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=22.06 E-value=3.8e+02 Score=23.55 Aligned_cols=40 Identities=8% Similarity=0.047 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 55 FDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 55 ~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
.......+..+.+.|++.|.|=+.|+.++.-|+++...+|
T Consensus 113 ~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~ 152 (186)
T cd02904 113 EKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLI 152 (186)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHH
Confidence 4556677788889999999999999999999999987654
No 112
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=21.97 E-value=1.1e+02 Score=28.13 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=36.1
Q ss_pred CCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEe
Q psy16152 25 VPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYA 77 (295)
Q Consensus 25 iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~ 77 (295)
.|.-+.+++|...---...|++.. ...+.+.+++.-+.+.||+ ||+|.
T Consensus 83 kP~~vtLVPEkr~E~TTegGldv~----~~~~~l~~~i~~l~~~gI~-VSLFi 130 (234)
T cd00003 83 KPHQVTLVPEKREELTTEGGLDVA----GQAEKLKPIIERLKDAGIR-VSLFI 130 (234)
T ss_pred CCCEEEECCCCCCCccCCccchhh----cCHHHHHHHHHHHHHCCCE-EEEEe
Confidence 599999999886543334455432 2468899999999999996 89887
No 113
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.83 E-value=5.9e+02 Score=22.92 Aligned_cols=65 Identities=12% Similarity=0.331 Sum_probs=39.9
Q ss_pred HHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEec
Q psy16152 51 HSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIG 122 (295)
Q Consensus 51 h~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iG 122 (295)
...+.+.+.+.++.|.++|++.|.+..... ...... ...++.+.+.+.+++ +...+.||++-+-.
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~-~~~~~~---~~~~~~~~~~l~~l~---~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 89 RQQGLEIMEKAIQLARDLGIRTIQLAGYDV-YYEEHD---EETRRRFREGLKEAV---ELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEecCccc-ccCcCC---HHHHHHHHHHHHHHH---HHHHHcCCEEEEee
Confidence 456788899999999999999998753210 011111 122334445555543 34567899877754
No 114
>KOG0086|consensus
Probab=21.63 E-value=5.5e+02 Score=22.45 Aligned_cols=117 Identities=15% Similarity=0.256 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
+|-++...+..--..---..|-||+... | +-.+.|-+-+.+ ...+...+|.|-.+|+.+-|.++-.
T Consensus 66 AGQErFRSVtRsYYRGAAGAlLVYD~Ts----r--dsfnaLtnWL~D--------aR~lAs~nIvviL~GnKkDL~~~R~ 131 (214)
T KOG0086|consen 66 AGQERFRSVTRSYYRGAAGALLVYDITS----R--DSFNALTNWLTD--------ARTLASPNIVVILCGNKKDLDPERE 131 (214)
T ss_pred ccHHHHHHHHHHHhccccceEEEEeccc----h--hhHHHHHHHHHH--------HHhhCCCcEEEEEeCChhhcChhhh
Confidence 3445666555544444466789999643 2 323333333222 1235567899999998776655533
Q ss_pred HHHHHHHHhccCCCceEEEEEecCCCH---HHHHHHHHHHHHhhhhCCCCCCCCC
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSYTSR---DEMVETSRILIDGLRTNKITNEDVT 184 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y~Gr---~eIv~a~r~l~~~v~~~~l~~~dI~ 184 (295)
-...++..- ++.+.+...=-++|.|- +..+.+++.+...++.|+++|+++.
T Consensus 132 VtflEAs~F-aqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GElDPer~g 185 (214)
T KOG0086|consen 132 VTFLEASRF-AQENELMFLETSALTGENVEEAFLKCARTILNKIESGELDPERMG 185 (214)
T ss_pred hhHHHHHhh-hcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCCCHHHcc
Confidence 333222221 22333333334567774 5678899999988888988888764
No 115
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=21.59 E-value=2e+02 Score=27.57 Aligned_cols=72 Identities=18% Similarity=0.365 Sum_probs=44.4
Q ss_pred CcchhhhhHHHHHHHHHHH-hcCCCCCCEE---EEEEcCChhhHHhcCCchhHh-HHhhHHHHHHHHHHHHhcCCCeEEE
Q psy16152 1 MSWVVDSTLNWFQYAIIKL-LKKGHVPKHI---AFIMDGNRRYAKRSNAKTIEG-HSKGFDKLAETLQWCLDLGVREVTV 75 (295)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-l~~~~iP~HI---avImDGnrR~A~~~g~~~~~G-h~~g~~~l~~ii~wc~~~GI~~lTv 75 (295)
|+|+|+. .|.++++... |. |..+ -||.+|... +.-++.-.| ++.+.+.+.+-++-+..+||+.|.+
T Consensus 10 ~RRlRk~--~~~R~lv~Et~L~----~~dLI~PiFV~eg~~~---~~~I~SMPgv~r~s~d~l~~~~~~~~~lGi~av~L 80 (330)
T COG0113 10 PRRLRKS--PALRRLVRETRLT----PNDLIYPIFVVEGENI---KEEIPSMPGVYRYSLDRLVEEAEELVDLGIPAVIL 80 (330)
T ss_pred hhhccCC--HHHHHHHHhcCCC----HHHeeEeEEEecCCCC---ccccCCCCCceeccHHHHHHHHHHHHhcCCCEEEE
Confidence 3566655 6666665543 22 2222 366777532 112222222 3457899999999999999999999
Q ss_pred EeecCC
Q psy16152 76 YAFSIE 81 (295)
Q Consensus 76 Y~fS~e 81 (295)
|....+
T Consensus 81 Fgvp~~ 86 (330)
T COG0113 81 FGVPDD 86 (330)
T ss_pred eCCCcc
Confidence 986643
No 116
>PTZ00484 GTP cyclohydrolase I; Provisional
Probab=21.21 E-value=74 Score=29.64 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=21.8
Q ss_pred CEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhc
Q psy16152 27 KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDL 68 (295)
Q Consensus 27 ~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~ 68 (295)
-|||.|+||. -.|+.++.++++|+..-
T Consensus 161 ~hIaYiP~~~---------------ViGLSKl~RiV~~~arR 187 (259)
T PTZ00484 161 CTIGYIPNKK---------------VLGLSKFARIIEIFSRR 187 (259)
T ss_pred EEEEEecCCe---------------EecHHHHHHHHHHHhcc
Confidence 6899999763 47999999999997543
No 117
>TIGR03586 PseI pseudaminic acid synthase.
Probab=21.17 E-value=7.4e+02 Score=23.76 Aligned_cols=169 Identities=11% Similarity=0.039 Sum_probs=97.9
Q ss_pred hHhHHhhHHHHHHHHHHHHhcCCCeEE-EEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCC
Q psy16152 48 IEGHSKGFDKLAETLQWCLDLGVREVT-VYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIEL 126 (295)
Q Consensus 48 ~~Gh~~g~~~l~~ii~wc~~~GI~~lT-vY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~ 126 (295)
.+++..+.+...++.+.|.+.||..+| +|+. +.| +++.+.++.+.=+|..+.
T Consensus 69 ~~~~el~~e~~~~L~~~~~~~Gi~~~stpfd~---------~sv------------------d~l~~~~v~~~KI~S~~~ 121 (327)
T TIGR03586 69 YQEAHTPWEWHKELFERAKELGLTIFSSPFDE---------TAV------------------DFLESLDVPAYKIASFEI 121 (327)
T ss_pred HHHhhCCHHHHHHHHHHHHHhCCcEEEccCCH---------HHH------------------HHHHHcCCCEEEECCccc
Confidence 344556778889999999999999976 3441 112 123345566666787776
Q ss_pred CCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHh----h------hhCCCCCCCCCHHHHHhhhccCC
Q psy16152 127 LPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDG----L------RTNKITNEDVTMDLFDKCLYTGT 196 (295)
Q Consensus 127 lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~----v------~~~~l~~~dI~~~~i~~~L~~~~ 196 (295)
-.-.+.+.+.+ ++..|.+--+-+.-+||..|+..+.+. + ..-...+++++...|...=...
T Consensus 122 ~n~~LL~~va~--------~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f- 192 (327)
T TIGR03586 122 TDLPLIRYVAK--------TGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERF- 192 (327)
T ss_pred cCHHHHHHHHh--------cCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHh-
Confidence 66666655432 234555666778999999999988642 0 0001224556665554211111
Q ss_pred CCCCcEEEeeCCCcccCCCchhhccc------eeEEEccCC-C--C----CCCHHHHHHHHHHhhhhhhcccccc
Q psy16152 197 SPEPDLIIRTSGETRLSDFMLVQSKS------SFLYFCHKL-W--P----EFTAWNLINAVFAFQYDFYTNEMWR 258 (295)
Q Consensus 197 ~PdPDLlIRtgGe~RLSgFL~WQ~~y------tEl~f~~~l-W--p----~f~~~df~~aL~~Y~~r~~R~Gk~~ 258 (295)
++-|=.|+. ..|..+=-.+. =|-+|++.. | | .+++.+|-..+......+.=.|.-.
T Consensus 193 ----~~pVG~SDH--t~G~~~~~aAva~GA~iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~~ 261 (327)
T TIGR03586 193 ----NVPVGLSDH--TLGILAPVAAVALGACVIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEVN 261 (327)
T ss_pred ----CCCEEeeCC--CCchHHHHHHHHcCCCEEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 122322332 23432222222 277787644 5 3 3678888888877777776667654
No 118
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=21.16 E-value=8e+02 Score=25.14 Aligned_cols=129 Identities=19% Similarity=0.261 Sum_probs=74.7
Q ss_pred CCCCCEEEEEEcCChhhHHhcC--------CchhHhHHhhHHHHHHHHHHHHhcCCCeEE-EEeecCCCCCCCHHHHHHH
Q psy16152 23 GHVPKHIAFIMDGNRRYAKRSN--------AKTIEGHSKGFDKLAETLQWCLDLGVREVT-VYAFSIENFKRTEEEVNGL 93 (295)
Q Consensus 23 ~~iP~HIavImDGnrR~A~~~g--------~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lT-vY~fS~eN~~R~~~Ev~~L 93 (295)
+..|.-+.++..- | =-+-+| -+..+.-++|+..|..-++-+..+||+.|- +-.|.++ +.+|+..+
T Consensus 317 gl~PdavVlVATv-R-ALK~hGG~~~~~l~~Env~avk~G~aNL~~Hi~Nikkfgvp~VVAIN~F~tD----t~~Ei~~i 390 (554)
T COG2759 317 GLKPDAVVLVATV-R-ALKMHGGVPKEDLTEENVDAVKKGFANLLKHIENIKKFGVPVVVAINKFPTD----TEAEIAAI 390 (554)
T ss_pred CCCCCeEEEeeeh-H-HHHHcCCCChHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccCCCC----CHHHHHHH
Confidence 5567776666533 2 223333 123457779999999999999999999854 4456664 78888876
Q ss_pred HHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhh
Q psy16152 94 MDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGL 173 (295)
Q Consensus 94 ~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v 173 (295)
-+++. +.|+.+...---..=.+...+..+++...+.++ .-++-.-|+-++.|-+-...+++++
T Consensus 391 ~~~~~--------------~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~~---~~~f~~lYd~~~~i~~Ki~~I~~~i 453 (554)
T COG2759 391 EKLCE--------------EHGVEVALSEVWAKGGEGGIELAKKVVEAIEQN---DSEFKRLYDVEDPIEEKIEKIAKEI 453 (554)
T ss_pred HHHHH--------------HcCCceeehhhhhccCccHHHHHHHHHHHHhCC---cccceeecccCCcHHHHHHHHHHHh
Confidence 44432 244444332211111112222333333333331 1133456899888888888888876
Q ss_pred h
Q psy16152 174 R 174 (295)
Q Consensus 174 ~ 174 (295)
-
T Consensus 454 Y 454 (554)
T COG2759 454 Y 454 (554)
T ss_pred c
Confidence 4
No 119
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=20.98 E-value=3.9e+02 Score=25.35 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHhc-CCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 54 GFDKLAETLQWCLDL-GVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 54 g~~~l~~ii~wc~~~-GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
+.+.+.+++++..+. ||+.|.|=. +|-+.++...+..|+
T Consensus 126 ~~~~~~~~i~~i~~~~~i~~VvltG--GEPL~~~d~~L~~ll 165 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPEINEVILSG--GDPLMAKDHRLDWLL 165 (321)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeC--cccccCCchHHHHHH
Confidence 456778888887755 899888443 566666554444443
No 120
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=20.96 E-value=6.9e+02 Score=24.73 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeec
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFS 79 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS 79 (295)
...+.+.+.++++.++|+.+|++|.++
T Consensus 215 qt~e~~~~~l~~~~~l~~~~i~~y~l~ 241 (453)
T PRK09249 215 QTPESFARTLEKVLELRPDRLAVFNYA 241 (453)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEccCc
Confidence 356889999999999999999999976
No 121
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=20.76 E-value=1.3e+02 Score=19.48 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=24.4
Q ss_pred CCCceEEEEEecCCCHHHHHHHHHHHHH
Q psy16152 144 DNTEGFLNVAFSYTSRDEMVETSRILID 171 (295)
Q Consensus 144 ~~~~~~lni~~~y~Gr~eIv~a~r~l~~ 171 (295)
+++.+.|++.++.++++.+.+-.++|+.
T Consensus 8 G~Tty~V~~~F~~~s~et~~DKi~rli~ 35 (37)
T PF14202_consen 8 GKTTYVVEVHFSETSKETMQDKIKRLIR 35 (37)
T ss_pred CCEEEEEEEEECCCccccHHHHHHHHHh
Confidence 4677899999999999999999888864
No 122
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=20.72 E-value=3.9e+02 Score=22.67 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 55 FDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 55 ~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
.+.+...+..+.+.+++.|.|=++++.++.=|++++...|
T Consensus 98 ~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~ 137 (175)
T cd02907 98 KKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETI 137 (175)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHH
Confidence 4445566677888899999999999999999999987644
No 123
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=20.05 E-value=2.9e+02 Score=26.57 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=28.8
Q ss_pred HHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCC
Q psy16152 51 HSKGFDKLAETLQWCLDLGVREVTVYAFSIENFK 84 (295)
Q Consensus 51 h~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~ 84 (295)
+..|++|..+++..|.++|++-|||-+-++-...
T Consensus 136 ~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G 169 (322)
T CHL00198 136 SPGGYRKALRLMKHANKFGLPILTFIDTPGAWAG 169 (322)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcC
Confidence 3467899999999999999999999997775443
Done!