Query psy16152
Match_columns 295
No_of_seqs 124 out of 1045
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 22:10:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h8e_A Undecaprenyl pyrophosph 100.0 1.3E-87 4.3E-92 610.2 26.4 237 19-258 18-254 (256)
2 3sgv_B Undecaprenyl pyrophosph 100.0 1.6E-87 5.6E-92 608.5 24.4 235 23-260 15-249 (253)
3 3ugs_B Undecaprenyl pyrophosph 100.0 8.9E-85 3E-89 581.6 25.6 222 23-256 4-225 (225)
4 2d2r_A Undecaprenyl pyrophosph 100.0 1.1E-84 3.6E-89 590.3 23.8 232 23-258 13-244 (245)
5 1f75_A Undecaprenyl pyrophosph 100.0 1.3E-84 4.3E-89 591.4 23.1 235 20-257 15-249 (249)
6 3qas_B Undecaprenyl pyrophosph 100.0 2.1E-84 7.2E-89 590.5 23.8 241 17-260 5-249 (253)
7 2vg3_A Undecaprenyl pyrophosph 100.0 1.3E-83 4.5E-88 592.5 27.2 236 19-257 49-284 (284)
8 2vg0_A Short-chain Z-isoprenyl 100.0 4.7E-81 1.6E-85 561.9 23.3 222 24-250 1-227 (227)
9 2ojp_A DHDPS, dihydrodipicolin 57.3 1E+02 0.0036 27.3 11.6 105 53-172 19-125 (292)
10 3s5o_A 4-hydroxy-2-oxoglutarat 57.2 1.1E+02 0.0037 27.4 11.5 105 53-172 32-140 (307)
11 2wkj_A N-acetylneuraminate lya 57.1 1.1E+02 0.0037 27.4 11.9 106 53-173 29-136 (303)
12 1exn_A 5'-exonuclease, 5'-nucl 55.4 13 0.00044 33.8 4.8 50 25-74 58-122 (290)
13 2yxg_A DHDPS, dihydrodipicolin 53.9 1.2E+02 0.004 26.9 11.7 106 53-173 18-125 (289)
14 2ehh_A DHDPS, dihydrodipicolin 53.8 1.2E+02 0.0041 26.9 12.1 106 53-173 18-125 (294)
15 2vc6_A MOSA, dihydrodipicolina 53.4 97 0.0033 27.5 10.4 106 53-173 18-125 (292)
16 2v9d_A YAGE; dihydrodipicolini 53.3 1.1E+02 0.0037 28.0 10.9 106 53-173 49-156 (343)
17 3dx5_A Uncharacterized protein 53.3 46 0.0016 28.4 8.0 65 52-123 80-144 (286)
18 1o5k_A DHDPS, dihydrodipicolin 50.4 1.4E+02 0.0047 26.7 11.0 105 53-172 30-136 (306)
19 3cpr_A Dihydrodipicolinate syn 48.8 1.5E+02 0.005 26.5 12.8 106 53-173 34-141 (304)
20 1f6k_A N-acetylneuraminate lya 48.7 1.4E+02 0.0049 26.3 12.0 106 53-173 21-129 (293)
21 2rfg_A Dihydrodipicolinate syn 48.1 1E+02 0.0035 27.5 9.7 106 53-173 18-125 (297)
22 3tc3_A UV damage endonuclease; 48.1 71 0.0024 29.2 8.6 103 53-162 57-173 (310)
23 3si9_A DHDPS, dihydrodipicolin 47.1 1.6E+02 0.0055 26.5 10.9 106 53-173 40-147 (315)
24 3b4u_A Dihydrodipicolinate syn 47.1 1.3E+02 0.0045 26.6 10.2 106 53-173 21-129 (294)
25 1xky_A Dihydrodipicolinate syn 46.7 1.6E+02 0.0054 26.2 11.9 106 53-173 30-137 (301)
26 3qfe_A Putative dihydrodipicol 45.3 1.5E+02 0.0053 26.6 10.5 106 53-173 29-138 (318)
27 3a5f_A Dihydrodipicolinate syn 44.8 1.1E+02 0.0037 27.1 9.3 105 53-172 19-125 (291)
28 3flu_A DHDPS, dihydrodipicolin 44.5 1.7E+02 0.0058 26.0 11.9 106 53-173 25-132 (297)
29 3fkr_A L-2-keto-3-deoxyarabona 43.8 1.8E+02 0.0061 26.0 11.1 124 53-191 26-160 (309)
30 3d0c_A Dihydrodipicolinate syn 42.8 1.5E+02 0.005 26.6 9.9 105 53-173 30-136 (314)
31 2r91_A 2-keto-3-deoxy-(6-phosp 42.5 1.8E+02 0.006 25.6 10.5 103 53-173 16-121 (286)
32 3l21_A DHDPS, dihydrodipicolin 40.9 2E+02 0.0067 25.7 12.9 106 53-173 33-140 (304)
33 3m5v_A DHDPS, dihydrodipicolin 40.9 1.9E+02 0.0066 25.6 11.8 107 53-173 25-133 (301)
34 1xho_A Chorismate mutase; sout 40.3 23 0.00078 29.0 3.5 33 152-184 39-72 (148)
35 3qze_A DHDPS, dihydrodipicolin 39.2 2.1E+02 0.0073 25.6 11.8 106 53-173 41-148 (314)
36 3gqe_A Non-structural protein 38.3 1.6E+02 0.0056 24.1 9.4 73 56-142 89-161 (168)
37 3na8_A Putative dihydrodipicol 38.1 2.2E+02 0.0076 25.5 11.3 106 53-173 42-149 (315)
38 3pzj_A Probable acetyltransfer 37.9 69 0.0024 25.7 6.3 34 47-80 130-163 (209)
39 1w3i_A EDA, 2-keto-3-deoxy glu 37.8 2.1E+02 0.0073 25.2 10.8 103 53-173 17-122 (293)
40 3dz1_A Dihydrodipicolinate syn 36.0 2.4E+02 0.0081 25.2 11.4 105 53-173 26-131 (313)
41 1dbf_A Protein (chorismate mut 35.9 27 0.00091 27.9 3.2 32 153-184 11-43 (127)
42 2nuw_A 2-keto-3-deoxygluconate 35.4 2E+02 0.0067 25.4 9.4 103 53-173 17-122 (288)
43 3h5d_A DHDPS, dihydrodipicolin 35.4 1.6E+02 0.0056 26.3 9.0 105 53-172 25-132 (311)
44 3oqv_A ALBC; rossman fold, cyc 33.5 46 0.0016 29.5 4.6 117 54-191 44-175 (247)
45 1ufy_A Chorismate mutase; shik 32.0 35 0.0012 27.1 3.2 32 153-184 10-43 (122)
46 3e96_A Dihydrodipicolinate syn 31.2 1.5E+02 0.005 26.6 7.9 105 53-173 30-136 (316)
47 3daq_A DHDPS, dihydrodipicolin 31.1 2.7E+02 0.0094 24.5 13.1 106 53-173 20-127 (292)
48 2zds_A Putative DNA-binding pr 31.1 2.6E+02 0.0088 24.2 10.8 67 53-122 108-180 (340)
49 3q71_A Poly [ADP-ribose] polym 30.4 1.5E+02 0.0051 25.5 7.4 40 55-94 134-173 (221)
50 2ge3_A Probable acetyltransfer 30.1 51 0.0017 25.2 4.1 33 48-80 97-129 (170)
51 2r8w_A AGR_C_1641P; APC7498, d 29.9 3.1E+02 0.011 24.7 12.2 106 53-173 52-159 (332)
52 3tak_A DHDPS, dihydrodipicolin 29.8 2.9E+02 0.0098 24.3 12.5 106 53-173 19-126 (291)
53 4dpp_A DHDPS 2, dihydrodipicol 29.4 3.4E+02 0.012 25.0 10.7 105 53-172 77-183 (360)
54 2jyc_A Uncharacterized protein 29.2 1.9E+02 0.0064 23.3 7.5 40 55-94 105-144 (160)
55 3guv_A Site-specific recombina 29.1 2.1E+02 0.0073 22.5 8.4 71 56-142 26-102 (167)
56 2eee_A Uncharacterized protein 28.5 1.4E+02 0.0048 23.7 6.5 40 55-94 94-133 (149)
57 3kh6_A Poly [ADP-ribose] polym 28.4 1.5E+02 0.0051 25.0 7.0 39 56-94 115-153 (199)
58 2ftp_A Hydroxymethylglutaryl-C 28.3 3.1E+02 0.011 24.2 10.9 97 60-170 87-198 (302)
59 2ae6_A Acetyltransferase, GNAT 28.0 58 0.002 25.0 4.1 33 48-80 93-125 (166)
60 3tva_A Xylose isomerase domain 27.9 2.1E+02 0.0071 24.3 8.1 62 51-122 97-159 (290)
61 2pfu_A Biopolymer transport EX 27.8 1.3E+02 0.0044 21.5 5.8 22 54-75 69-90 (99)
62 2h7b_A Core-binding factor, ML 27.3 22 0.00076 27.4 1.3 26 160-185 25-50 (105)
63 1olt_A Oxygen-independent copr 27.0 1.3E+02 0.0044 28.4 7.0 28 54-81 218-245 (457)
64 2bei_A Diamine acetyltransfera 27.0 63 0.0021 25.1 4.1 33 48-80 100-132 (170)
65 1r4g_A RNA polymerase alpha su 26.8 52 0.0018 21.8 2.8 19 85-103 32-50 (53)
66 3l23_A Sugar phosphate isomera 26.7 1.8E+02 0.0062 25.3 7.6 59 52-120 104-164 (303)
67 3bvp_A INT, TP901-1 integrase; 26.7 1.1E+02 0.0039 23.5 5.6 65 56-136 25-92 (138)
68 3h7i_A Ribonuclease H, RNAse H 26.3 50 0.0017 30.2 3.7 83 25-127 62-159 (305)
69 2j8m_A Acetyltransferase PA486 26.0 65 0.0022 24.7 4.0 32 49-80 95-126 (172)
70 2qul_A D-tagatose 3-epimerase; 25.8 2.9E+02 0.01 23.1 9.2 28 51-78 83-110 (290)
71 2l69_A Rossmann 2X3 fold prote 25.7 2.2E+02 0.0075 21.6 7.5 50 109-168 20-70 (134)
72 3fbu_A Acetyltransferase, GNAT 25.4 1.1E+02 0.0039 22.7 5.3 33 48-80 94-127 (168)
73 3obe_A Sugar phosphate isomera 25.0 2.4E+02 0.0082 24.5 8.1 59 52-120 110-168 (305)
74 4b4k_A N5-carboxyaminoimidazol 24.9 2.9E+02 0.01 23.1 8.0 44 29-92 25-68 (181)
75 3eb2_A Putative dihydrodipicol 24.7 3.6E+02 0.012 23.8 9.8 106 53-173 22-129 (300)
76 1vhu_A Hypothetical protein AF 24.7 1.9E+02 0.0065 24.4 7.0 40 55-94 126-165 (211)
77 3qc0_A Sugar isomerase; TIM ba 24.3 2.3E+02 0.0077 23.6 7.5 66 50-121 77-142 (275)
78 1ydn_A Hydroxymethylglutaryl-C 24.0 95 0.0033 27.4 5.2 57 38-97 127-193 (295)
79 2hk0_A D-psicose 3-epimerase; 23.7 3.5E+02 0.012 23.2 10.8 66 51-122 102-171 (309)
80 2cw6_A Hydroxymethylglutaryl-C 23.2 1.3E+02 0.0046 26.5 6.0 59 38-99 128-196 (298)
81 2i79_A Acetyltransferase, GNAT 23.2 90 0.0031 23.9 4.4 33 48-80 98-131 (172)
82 3u0h_A Xylose isomerase domain 23.1 2.4E+02 0.0084 23.4 7.5 64 51-122 79-142 (281)
83 3eo4_A Uncharacterized protein 23.1 82 0.0028 23.7 4.1 32 49-80 103-134 (164)
84 3lp6_A Phosphoribosylaminoimid 23.1 2.7E+02 0.0092 23.2 7.3 72 28-131 9-80 (174)
85 4abl_A Poly [ADP-ribose] polym 23.0 3.2E+02 0.011 22.5 9.4 39 56-94 104-142 (183)
86 1vhs_A Similar to phosphinothr 23.0 66 0.0023 25.0 3.5 32 49-80 94-125 (175)
87 2dxq_A AGR_C_4057P, acetyltran 22.8 92 0.0031 23.4 4.3 35 46-80 91-125 (150)
88 1tiq_A Protease synthase and s 22.7 84 0.0029 24.5 4.1 32 49-80 103-134 (180)
89 3sig_A PArg, poly(ADP-ribose) 22.6 1.3E+02 0.0046 26.9 5.8 41 55-95 197-237 (277)
90 1tz9_A Mannonate dehydratase; 22.6 2.1E+02 0.0073 25.7 7.4 25 51-75 90-114 (367)
91 2xd7_A Core histone macro-H2A. 22.5 2.4E+02 0.0083 23.3 7.2 40 55-94 115-154 (193)
92 2r1i_A GCN5-related N-acetyltr 22.5 1.4E+02 0.0046 22.3 5.2 34 47-80 108-141 (172)
93 3trh_A Phosphoribosylaminoimid 21.8 2.9E+02 0.01 22.9 7.3 47 28-94 8-54 (169)
94 4e0a_A BH1408 protein; structu 21.8 96 0.0033 22.8 4.1 32 49-80 101-132 (164)
95 2p6v_A Transcription initiatio 21.4 31 0.0011 26.9 1.1 30 157-186 37-66 (114)
96 4grd_A N5-CAIR mutase, phospho 21.4 2.1E+02 0.007 23.9 6.3 73 24-131 11-85 (173)
97 1xmp_A PURE, phosphoribosylami 21.3 2.4E+02 0.0081 23.5 6.6 46 28-93 13-58 (170)
98 3g8w_A Lactococcal prophage PS 21.3 1.3E+02 0.0045 22.4 4.9 32 49-80 94-125 (169)
99 3ors_A N5-carboxyaminoimidazol 21.3 2.4E+02 0.0081 23.3 6.6 70 28-131 5-76 (163)
100 1wur_A GTP cyclohydrolase I; b 21.1 39 0.0013 29.5 1.8 27 27-68 119-145 (220)
101 1on0_A YYCN protein; structura 21.0 64 0.0022 24.6 3.0 33 48-80 100-132 (158)
102 3fix_A N-acetyltransferase; te 20.9 1.2E+02 0.004 23.3 4.6 34 47-80 121-154 (183)
103 2ywx_A Phosphoribosylaminoimid 20.4 2.6E+02 0.0091 22.8 6.7 68 29-131 2-69 (157)
104 1is8_A GTP cyclohydrolase I; e 20.0 38 0.0013 29.7 1.5 27 27-68 132-158 (230)
No 1
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.3e-87 Score=610.16 Aligned_cols=237 Identities=34% Similarity=0.547 Sum_probs=229.9
Q ss_pred HhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHH
Q psy16152 19 LLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLAR 98 (295)
Q Consensus 19 ~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~ 98 (295)
.+..+++|+|||||||||||||+++|++..+||++|++++.+++.||.++||++||||+||+|||+||++||+.||++++
T Consensus 18 ~~~~~~iP~HVAiIMDGN~RwAk~rgl~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~ 97 (256)
T 4h8e_A 18 ELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPV 97 (256)
T ss_dssp -CCTTCCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred hccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHHH
Confidence 35668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCC
Q psy16152 99 AKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKI 178 (295)
Q Consensus 99 ~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l 178 (295)
+++.+.+ +.++++||+|+++||++.||+++++.+..+++.|++|++++||||++||||+||++|++++++++++|.+
T Consensus 98 ~~l~~~~---~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~~v~~g~l 174 (256)
T 4h8e_A 98 NFLKTFL---PELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGL 174 (256)
T ss_dssp HHHHHHH---HHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH---HHHHHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 9998765 4588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccccc
Q psy16152 179 TNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWR 258 (295)
Q Consensus 179 ~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~~ 258 (295)
++++||++.|+++|+++++|||||+||||||+|||||||||++||||||++++||||+..||++||.+||+|+||||+++
T Consensus 175 ~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~dl~~Ai~~yq~R~RRfG~~~ 254 (256)
T 4h8e_A 175 NSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLS 254 (256)
T ss_dssp CGGGCCHHHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHCCCCTTCC-
T ss_pred ChhhCCHHHHHHhCCCCCCCCCcEEEEcCCCCcccCchHHHHcCeEEEECCCCCccCCHHHHHHHHHHHHhhhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=100.00 E-value=1.6e-87 Score=608.53 Aligned_cols=235 Identities=29% Similarity=0.472 Sum_probs=210.3
Q ss_pred CCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q psy16152 23 GHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFK 102 (295)
Q Consensus 23 ~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~ 102 (295)
.++|+|||||||||||||+++|++..+||++|++++.+++.||.++||++||||+||+|||+||++||+.||+++++++.
T Consensus 15 ~~iP~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~l~ 94 (253)
T 3sgv_B 15 AHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALD 94 (253)
T ss_dssp TTCCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHHHTTHH
T ss_pred CCCCCEEEEEecCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCCC
Q psy16152 103 RLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNED 182 (295)
Q Consensus 103 ~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~d 182 (295)
+. .+.++++||+|+++||++.||+++++.+.++++.|++|++++||||++||||+||++|++++++++++|.+++++
T Consensus 95 ~~---~~~l~~~~vrvr~iGd~~~Lp~~l~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~ia~~v~~g~l~~~~ 171 (253)
T 3sgv_B 95 SE---VKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQ 171 (253)
T ss_dssp HH---HHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHHHHTSSCGGG
T ss_pred HH---HHHHHHCCeEEEEEeehhhCCHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChhh
Confidence 64 356889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccccccc
Q psy16152 183 VTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWRAD 260 (295)
Q Consensus 183 I~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~~~~ 260 (295)
||++.|+++|+++++||||||||||||+|||||||||++||||||++++||||+..||++||.+||+|+||||++.++
T Consensus 172 I~e~~i~~~L~t~~~PdpDLlIRTsGE~RLSnFLLWQ~aYsElyFtd~lWPdF~~~dl~~Ai~~yq~R~RRfG~~~~~ 249 (253)
T 3sgv_B 172 IDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGGTEPG 249 (253)
T ss_dssp CCHHHHHTTSTTTTSCCCCEEEEESSCCCCTTSCSGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHHHC---------
T ss_pred CCHHHHHHhhcccCCCCCcEEEEecCCCcccCchHHHHcCEEEEECCCCCccCCHHHHHHHHHHHHhhhccCCCCccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998654
No 3
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=100.00 E-value=8.9e-85 Score=581.60 Aligned_cols=222 Identities=25% Similarity=0.439 Sum_probs=200.5
Q ss_pred CCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q psy16152 23 GHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFK 102 (295)
Q Consensus 23 ~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~ 102 (295)
..+|+|||||||||||||+++|++..+||++|++++.+++.||.++||++||||+||+|||+||++||+.||+++++++.
T Consensus 4 m~~P~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~~~l~ 83 (225)
T 3ugs_B 4 MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLD 83 (225)
T ss_dssp CCCCCEEEEEECCCC--------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEeccCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCCC
Q psy16152 103 RLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNED 182 (295)
Q Consensus 103 ~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~d 182 (295)
+. .+.++++||+|+++||++.||+++++.+.++++.|++|++++||||++||||+||++|++++ +++| ++
T Consensus 84 ~~---~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~A~~~i---v~~g----~~ 153 (225)
T 3ugs_B 84 EA---LEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRV---IEKK----LE 153 (225)
T ss_dssp HH---HHHSTTTTEEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHH---HHTT----CC
T ss_pred HH---HHHHHHCCcEEEEEeChHhCCHHHHHHHHHHHHHhcCCCCcEEEEeeCCCCHHHHHHHHHHH---HHhc----Cc
Confidence 64 35688999999999999999999999999999999999999999999999999999999999 4455 89
Q ss_pred CCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccc
Q psy16152 183 VTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEM 256 (295)
Q Consensus 183 I~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk 256 (295)
||++.|+++|++. ||||||||||||+|||||||||++||||||++++||||+..||++||.+||+|+||||+
T Consensus 154 I~e~~i~~~L~t~--PdpDLlIRTsGE~RLSnFLLWQ~aYsElyF~d~lWPdF~~~~l~~Ai~~y~~R~RRfG~ 225 (225)
T 3ugs_B 154 LNEENLTQNLDLP--LDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRERTFGK 225 (225)
T ss_dssp CSHHHHHHTSSSC--SCCSEEEEESSCCSCTTSSTTTTTTCEEEEECSCSTTCCHHHHHHHHHHHHHSCCCTTC
T ss_pred CCHHHHHHhcCCC--CCCCEEEEeCCcccccCcchhhhhceEEEECCCCCccCCHHHHHHHHHHHHhhhccCCC
Confidence 9999999999997 99999999999999999999999999999999999999999999999999999999996
No 4
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=100.00 E-value=1.1e-84 Score=590.34 Aligned_cols=232 Identities=32% Similarity=0.477 Sum_probs=210.1
Q ss_pred CCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q psy16152 23 GHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFK 102 (295)
Q Consensus 23 ~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~ 102 (295)
+++|+|||||||||||||+++|++..+||..|++++.+++.||.++||++||||+||+|||+||++||+.||+++.+++.
T Consensus 13 ~~iP~HVAiImDGN~RwAk~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~ 92 (245)
T 2d2r_A 13 DSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLK 92 (245)
T ss_dssp -CCCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCchHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCCC
Q psy16152 103 RLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNED 182 (295)
Q Consensus 103 ~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~d 182 (295)
+.+. .+.++||+|+++|+.+.||+++++.+..+++.|++|++++||||++||||+||++|+|++++++++ +++|++
T Consensus 93 ~~~~---~l~~~~vrl~~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YggR~EIv~A~r~i~~~v~~-~l~~~~ 168 (245)
T 2d2r_A 93 DERS---TYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPS-NISLLE 168 (245)
T ss_dssp HHHH---HHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSCCT-TGGGCS
T ss_pred HHHH---HHHHcCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHh-cCChhh
Confidence 7653 477899999999999999999999999999999999999999999999999999999999999988 899999
Q ss_pred CCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhcccccc
Q psy16152 183 VTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMWR 258 (295)
Q Consensus 183 I~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~~ 258 (295)
||++.|+++|++.++|||||+||||||+|||||||||++||||||++++||||++.||++||.+||+|++|||++.
T Consensus 169 I~e~~i~~~L~t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~~~~~Al~~y~~R~RRfG~~~ 244 (245)
T 2d2r_A 169 SLENEISNRLDTRNLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELK 244 (245)
T ss_dssp CCHHHHHTTSTTTTSCCCSEEEECSSCCCCTTSSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHHCC------
T ss_pred CCHHHHHHHhccCCCCCCcEEEEcCCCccccCCcchhhcceEEEECCCCCCcCCHHHHHHHHHHHHhcCccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999864
No 5
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=100.00 E-value=1.3e-84 Score=591.44 Aligned_cols=235 Identities=34% Similarity=0.589 Sum_probs=209.8
Q ss_pred hcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHH
Q psy16152 20 LKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARA 99 (295)
Q Consensus 20 l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~ 99 (295)
+..+++|+|||||||||||||+++|++..+||..|++++.+++.||.++||++||||+||+|||+||++||+.||+++.+
T Consensus 15 ~~~~~iP~HVAiImDGN~RwA~~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~ 94 (249)
T 1f75_A 15 INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGD 94 (249)
T ss_dssp CCSTTSCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHH
T ss_pred cccCCCCCEEEEEecCCcHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHHHHHHHHHH
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCC
Q psy16152 100 KFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKIT 179 (295)
Q Consensus 100 ~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~ 179 (295)
++.+.+. .+.++||+|+++|+.+.||+++++.+..+++.|++|++++||||++||||+||++|++++++++++|.++
T Consensus 95 ~l~~~~~---~l~~~~vr~~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eIv~A~r~l~~~v~~g~l~ 171 (249)
T 1f75_A 95 FLNTFLP---ELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEIS 171 (249)
T ss_dssp HHHHHHH---HHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHH---HHHHcCeEEEEeCChhhCCHHHHHHHHHHHHhhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCC
Confidence 9987654 4778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhccccc
Q psy16152 180 NEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMW 257 (295)
Q Consensus 180 ~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~ 257 (295)
+++||++.|+++|++.++|||||+||||||+|||||||||++||||||++++||||++.||++||.+||+|+||||++
T Consensus 172 ~~~I~e~~i~~~L~t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~~~~~Al~~y~~r~RRfG~~ 249 (249)
T 1f75_A 172 LDEISETHFNEYLFTANMPDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQNRHRRFGGL 249 (249)
T ss_dssp GGGCSHHHHGGGSTTTTSCCCSEEEECTTCCBCCSCSTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHTTC-------
T ss_pred hHhCCHHHHHHhhccCCCCCCcEEEEcCCCccccCCchhhhhceEEEECCCCCCcCCHHHHHHHHHHHhcCccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999974
No 6
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=100.00 E-value=2.1e-84 Score=590.48 Aligned_cols=241 Identities=29% Similarity=0.471 Sum_probs=202.6
Q ss_pred HHHhcCCCCC----CEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHH
Q psy16152 17 IKLLKKGHVP----KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNG 92 (295)
Q Consensus 17 ~~~l~~~~iP----~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~ 92 (295)
...++.+++| +|||||||||||||+++|++..+||.+|++++.+++.||.++||++||||+||+|||+||++||+.
T Consensus 5 ~~~l~~~~iP~~~~~HVAiImDGN~RwAk~~gl~r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~ 84 (253)
T 3qas_B 5 ATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSA 84 (253)
T ss_dssp --------CCTTCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCC------------
T ss_pred ccccccCCCCCCCCCEEEEEecCCHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHH
Confidence 3455667899 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHh
Q psy16152 93 LMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDG 172 (295)
Q Consensus 93 L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~ 172 (295)
||+++.+++.+.+. .+.++||+|+++|+.+.||+++++.+..+++.|++|++++||||++||||+||++|+|+++++
T Consensus 85 Lm~l~~~~l~~~~~---~l~~~~vrlr~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YgGR~EIv~A~r~l~~~ 161 (253)
T 3qas_B 85 LMELFVWALDSEVK---SLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEK 161 (253)
T ss_dssp -----CTHHHHHHH---HHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHCCeEEEEeCChHhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 99999999987543 478899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhh
Q psy16152 173 LRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFY 252 (295)
Q Consensus 173 v~~~~l~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~ 252 (295)
+++|.+++++||++.|+++|++.++||||||||||||+|||||||||++||||||++++||||++.||++||.+||+|+|
T Consensus 162 v~~g~l~~~~I~e~~i~~~L~t~~~PdpDLlIRTsGe~RLSnFLlWQ~aysElyF~~~lWPdF~~~~~~~Al~~y~~R~R 241 (253)
T 3qas_B 162 VQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRER 241 (253)
T ss_dssp HHTTSCCGGGCCHHHHHTTSTTTTSCCCCEEEECSSCCCCTTSCSGGGTTCEEEECCSCGGGCCHHHHHHHHHHHHHHC-
T ss_pred HHcCCCChHHCCHHHHHHhhccCCCCCCcEEEEcCCCccccCCchhhhcCEEEEECCCCCCcCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccc
Q psy16152 253 TNEMWRAD 260 (295)
Q Consensus 253 R~Gk~~~~ 260 (295)
|||++.+.
T Consensus 242 RfG~~~~~ 249 (253)
T 3qas_B 242 RFGGTEPG 249 (253)
T ss_dssp --------
T ss_pred CCCCCCCC
Confidence 99997644
No 7
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=100.00 E-value=1.3e-83 Score=592.51 Aligned_cols=236 Identities=31% Similarity=0.470 Sum_probs=228.1
Q ss_pred HhcCCCCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHH
Q psy16152 19 LLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLAR 98 (295)
Q Consensus 19 ~l~~~~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~ 98 (295)
.+..+++|+|||||||||||||+++|++..+||.+|++++.+++.||.++||++||||+||+|||+||++||+.||++++
T Consensus 49 ~~~~~~iP~HVAIIMDGN~RwAk~rgl~r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm~L~~ 128 (284)
T 2vg3_A 49 RIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNR 128 (284)
T ss_dssp CCCTTTSCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred hcccCCCCCEEEEEecCChHHHHHcCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHH
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCC
Q psy16152 99 AKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKI 178 (295)
Q Consensus 99 ~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l 178 (295)
+++.+.+ +.+++++|+|+++|+.+.||+++++.+..+++.|++|++++||||++||||+||++|+|++++++++|++
T Consensus 129 ~~l~~~~---~~l~~~~vrvrviG~~~~lp~~~~~~i~~ae~~T~~n~~l~Lnia~~YgGR~EIv~A~r~la~~v~~g~l 205 (284)
T 2vg3_A 129 DVVRRRR---DTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRL 205 (284)
T ss_dssp HHHHHHH---HHHHHTTEEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHH---HHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCC
Confidence 9998654 3478899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhhhhccccc
Q psy16152 179 TNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDFYTNEMW 257 (295)
Q Consensus 179 ~~~dI~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r~~R~Gk~ 257 (295)
++++||++.|+++|++.++||||||||||||+|||||||||++||||||++++||||++.||++||.+||+|+||||++
T Consensus 206 ~~~dI~e~~i~~~L~t~~~PdPDLlIRTsGE~RLSnFLlWQ~aYsElyF~d~lWPdF~~~df~~Al~~Yq~R~RRfG~~ 284 (284)
T 2vg3_A 206 NPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGSA 284 (284)
T ss_dssp CGGGCCHHHHHHHSSSTTCCCCSEEEECTTCCCCTTTTTTTTTTCEEEECCSCGGGCCHHHHHHHHHHHHHSCCCSSCC
T ss_pred ChHHCCHHHHHHHhccCCCCCCcEEEeCCCCccccCCCchhhcceEEEECCCCCCcCCHHHHHHHHHHHhccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999974
No 8
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=100.00 E-value=4.7e-81 Score=561.93 Aligned_cols=222 Identities=33% Similarity=0.583 Sum_probs=215.7
Q ss_pred CCCCEEEEEEcCChhhHHhcC-CchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q psy16152 24 HVPKHIAFIMDGNRRYAKRSN-AKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFK 102 (295)
Q Consensus 24 ~iP~HIavImDGnrR~A~~~g-~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~ 102 (295)
++|+|||||||||||||+++| ++..+||++|++++.+++.||.++||++||||+||+|||+||++||+.||+++.+++.
T Consensus 1 ~iP~HvAiImDGN~RwA~~~g~l~~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm~l~~~~l~ 80 (227)
T 2vg0_A 1 DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVE 80 (227)
T ss_dssp CCCSEEEEECCCHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCChHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999 9999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCCCCCC
Q psy16152 103 RLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNED 182 (295)
Q Consensus 103 ~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l~~~d 182 (295)
+... .+++|+|+++|+.+.||+++++.+..+++.|++|++++||||++||||+||++|+|++++++++|++++++
T Consensus 81 ~~~~-----~~~~vrv~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eI~~A~r~l~~~v~~g~l~~~~ 155 (227)
T 2vg0_A 81 EICA-----PANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEE 155 (227)
T ss_dssp HHTC-----TTTCCEEEEESCGGGSCHHHHHHHHHHHHTSCSSCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHhc-----cccCeEEEecCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChhH
Confidence 6532 16899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----CCHHHHHhhhccCCCCCCcEEEeeCCCcccCCCchhhccceeEEEccCCCCCCCHHHHHHHHHHhhhh
Q psy16152 183 ----VTMDLFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYD 250 (295)
Q Consensus 183 ----I~~~~i~~~L~~~~~PdPDLlIRtgGe~RLSgFL~WQ~~ytEl~f~~~lWp~f~~~df~~aL~~Y~~r 250 (295)
||++.|+++|++.++|||||+||||||+|||||||||++||||||++++||||++.||++||.+||+|
T Consensus 156 ~~~~I~e~~i~~~L~t~~~pdpDLlIRTsGe~RLSnFLlWQ~aysElyf~~~lWPdF~~~~~~~Al~~y~~R 227 (227)
T 2vg0_A 156 LVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR 227 (227)
T ss_dssp HHHHCCHHHHHHHSTTTTSCCCSEEEECTTCCCCTTTTTTTTTTCEEEECSSCGGGCCHHHHHHHHHHHHHC
T ss_pred hhccCCHHHHHHhhccCCCCCCcEEEEcCCCccccCcchHHHcCeEEEECCCCCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999976
No 9
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=57.29 E-value=1e+02 Score=27.26 Aligned_cols=105 Identities=11% Similarity=0.147 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+ .++.
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-----------~gr~pv-iaGvg~---~~t~ 83 (292)
T 2ojp_A 19 VCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLA-----------DGRIPV-IAGTGA---NATA 83 (292)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-----------TTSSCE-EEECCC---SSHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHh-----------CCCCcE-EEecCC---ccHH
Confidence 4578899999999999999999999999999999999988876655432 112332 344322 2344
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDG 172 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~ 172 (295)
++++.+....+...+..+-+.=.| -+.+++.+-.+.+++.
T Consensus 84 ~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a 125 (292)
T 2ojp_A 84 EAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH 125 (292)
T ss_dssp HHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence 555555554444455555554445 3889999999998875
No 10
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=57.17 E-value=1.1e+02 Score=27.43 Aligned_cols=105 Identities=16% Similarity=0.093 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+. ++.
T Consensus 32 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~-----------~gr~pv-iaGvg~~---~t~ 96 (307)
T 3s5o_A 32 VDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAM-----------PKNRLL-LAGSGCE---STQ 96 (307)
T ss_dssp BCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTS-----------CTTSEE-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHc-----------CCCCcE-EEecCCC---CHH
Confidence 4578899999999999999999999999999999999988876654321 123333 3453322 234
Q ss_pred HHHHHHHHhccCCCceEEEEEecCC----CHHHHHHHHHHHHHh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSYT----SRDEMVETSRILIDG 172 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y~----Gr~eIv~a~r~l~~~ 172 (295)
++++.+....+...+..+-+.=.|. +.+++++-.+.+++.
T Consensus 97 ~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a 140 (307)
T 3s5o_A 97 ATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADL 140 (307)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhh
Confidence 4444444433334455554544453 788999999999886
No 11
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=57.12 E-value=1.1e+02 Score=27.39 Aligned_cols=106 Identities=17% Similarity=0.153 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+. ++.
T Consensus 29 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~-----------~grvpV-iaGvg~~---~t~ 93 (303)
T 2wkj_A 29 LDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEA-----------KGKIKL-IAHVGCV---STA 93 (303)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-----------TTTSEE-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHh-----------CCCCcE-EEecCCC---CHH
Confidence 4578899999999999999999999899999999999998877665432 122333 3343222 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| .+.++|.+-.+.+++.+
T Consensus 94 ~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 136 (303)
T 2wkj_A 94 ESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSA 136 (303)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhC
Confidence 344333333222334444444344 38899999999988764
No 12
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=55.37 E-value=13 Score=33.79 Aligned_cols=50 Identities=6% Similarity=-0.071 Sum_probs=33.0
Q ss_pred CCCEEEEEEcCChhhHHhcCCchhHhHHhhHH--------H-----HHHHHHHHHh--cCCCeEE
Q psy16152 25 VPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFD--------K-----LAETLQWCLD--LGVREVT 74 (295)
Q Consensus 25 iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~--------~-----l~~ii~wc~~--~GI~~lT 74 (295)
-|.|++|+.||.+.-=|..-.+...+++.... . +..+-+++.. +||+.+.
T Consensus 58 ~p~~~vvvFD~~~~tfR~~~~~~YKa~R~~~p~~~~~~~e~L~~q~~~~ikell~~~~~gip~i~ 122 (290)
T 1exn_A 58 SARTTIVLGDKGKSVFRLEHLPEYKGNRDEKYAQRTEEEKALDEQFFEYLKDAFELCKTTFPTFT 122 (290)
T ss_dssp TEEEEEEECCBSCCHHHHHHCTTTTHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTTSCEEC
T ss_pred CCCeEEEEEcCCCchhhhhCcHHHHcCCCCCCccccccchhHHHhhHHHHHHHHHhhCCCCcEEE
Confidence 49999999997654334334566667776654 2 3345555566 8999876
No 13
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=53.93 E-value=1.2e+02 Score=26.86 Aligned_cols=106 Identities=12% Similarity=0.197 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|-+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+. ++.
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-----------~gr~pv-iaGvg~~---~t~ 82 (289)
T 2yxg_A 18 VDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVV-----------NGRVQV-IAGAGSN---CTE 82 (289)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-----------TTSSEE-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHh-----------CCCCcE-EEeCCCC---CHH
Confidence 4578899999999999999999999899999999999988876654432 112333 3443322 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.+++.+-.+.+++.+
T Consensus 83 ~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~ 125 (289)
T 2yxg_A 83 EAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESI 125 (289)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 344333333222334444444344 48899999999998863
No 14
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=53.84 E-value=1.2e+02 Score=26.90 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+. ++.
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-----------~grvpv-iaGvg~~---~t~ 82 (294)
T 2ehh_A 18 VDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRA-----------AGRIKV-IAGTGGN---ATH 82 (294)
T ss_dssp ECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-----------TTSSEE-EEECCCS---CHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHh-----------CCCCcE-EEecCCC---CHH
Confidence 4578899999999999999999999899999999999988877655432 112333 3443322 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.++|.+-.+.+++.+
T Consensus 83 ~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 125 (294)
T 2ehh_A 83 EAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEV 125 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 444444443333444444444444 38899999999988753
No 15
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=53.44 E-value=97 Score=27.45 Aligned_cols=106 Identities=11% Similarity=0.148 Sum_probs=70.1
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+... ..+.| +.|-.+. ++.
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------gr~pv-iaGvg~~---~t~ 82 (292)
T 2vc6_A 18 IDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTAN-----------GRVPV-IAGAGSN---STA 82 (292)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSCB-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCCc---cHH
Confidence 45788999999999999999999888999999999999988776654321 12222 3443221 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecCC--CHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSYT--SRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y~--Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.|. +.+++.+-.+.+++.+
T Consensus 83 ~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~ 125 (292)
T 2vc6_A 83 EAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAAS 125 (292)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 4444444433334444444444443 8899999888888753
No 16
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=53.30 E-value=1.1e+02 Score=28.02 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+... ..+.| +.|-.+. ++.
T Consensus 49 ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~-----------grvpV-iaGvg~~---st~ 113 (343)
T 2v9d_A 49 LDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVD-----------RRVPV-LIGTGGT---NAR 113 (343)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCSS---CHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCCC---CHH
Confidence 45788999999999999999999998999999999999988776654321 12332 3443322 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.++|++-.+.+++.+
T Consensus 114 eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~ 156 (343)
T 2v9d_A 114 ETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSV 156 (343)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 344333333222334444444344 38899999999998753
No 17
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=53.27 E-value=46 Score=28.45 Aligned_cols=65 Identities=6% Similarity=0.066 Sum_probs=39.1
Q ss_pred HhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEecc
Q psy16152 52 SKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGN 123 (295)
Q Consensus 52 ~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd 123 (295)
....+.+.+.++.|..+|++.|.++.-....-..+.+..+. +.+.+.+++ +...+.||++-+-..
T Consensus 80 ~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~----~~~~l~~l~---~~a~~~Gv~l~lE~~ 144 (286)
T 3dx5_A 80 EKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQE----YVNRIRMIC---ELFAQHNMYVLLETH 144 (286)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHH----HHHHHHHHH---HHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHH----HHHHHHHHH---HHHHHhCCEEEEecC
Confidence 45678899999999999999999865322111112333333 334444443 234567888776543
No 18
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=50.42 E-value=1.4e+02 Score=26.69 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+... ..+.| +.|-.+. ++.
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~-----------grvpV-iaGvg~~---st~ 94 (306)
T 1o5k_A 30 LDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVD-----------GKIPV-IVGAGTN---STE 94 (306)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCCS---CHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhC-----------CCCeE-EEcCCCc---cHH
Confidence 45788999999999999999999999999999999999988776654321 12332 3443322 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDG 172 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~ 172 (295)
++++.+....+...+..+-+.=.| .+.+++.+-.+.+++.
T Consensus 95 ~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a 136 (306)
T 1o5k_A 95 KTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISER 136 (306)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence 333333333222333444443334 3789999999988875
No 19
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=48.78 E-value=1.5e+02 Score=26.48 Aligned_cols=106 Identities=16% Similarity=0.159 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+. ++.
T Consensus 34 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~-----------~grvpv-iaGvg~~---st~ 98 (304)
T 3cpr_A 34 IDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEV-----------GDRAKL-IAGVGTN---NTR 98 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHH-----------TTTSEE-EEECCCS---CHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHh-----------CCCCcE-EecCCCC---CHH
Confidence 4578899999999999999999999999999999999998877665432 122333 3453322 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| .+.+++.+-.+.+++.+
T Consensus 99 ~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~ 141 (304)
T 3cpr_A 99 TSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAAT 141 (304)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 444444433333444444444344 37899999999998763
No 20
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=48.65 E-value=1.4e+02 Score=26.33 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHh-cCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHH
Q psy16152 53 KGFDKLAETLQWCLD-LGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDL 131 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~-~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~ 131 (295)
-.++.+.++++|..+ .||.-|-+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+. ++
T Consensus 21 iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-----------~grvpv-iaGvg~~---~t 85 (293)
T 1f6k_A 21 INEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEA-----------KDQIAL-IAQVGSV---NL 85 (293)
T ss_dssp BCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHH-----------TTSSEE-EEECCCS---CH
T ss_pred cCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHh-----------CCCCeE-EEecCCC---CH
Confidence 457889999999999 9999999999999999999999988877655432 122333 3443322 23
Q ss_pred HHHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 132 IASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 132 ~~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
.++++.+....+...+..+-+.=.| .+.+++.+-.+.+++.+
T Consensus 86 ~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~ 129 (293)
T 1f6k_A 86 KEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAET 129 (293)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 3333333333222334444444344 47899999999988863
No 21
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=48.12 E-value=1e+02 Score=27.46 Aligned_cols=106 Identities=19% Similarity=0.259 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+... ..+.| +.|-.+. ++.
T Consensus 18 iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~---~t~ 82 (297)
T 2rfg_A 18 VDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQ-----------GRVPV-IAGAGSN---NPV 82 (297)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSCB-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhC-----------CCCeE-EEccCCC---CHH
Confidence 45788999999999999999999998999999999999988776654321 12322 3443222 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.++|.+-.+.+++.+
T Consensus 83 ~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 125 (297)
T 2rfg_A 83 EAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAI 125 (297)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 344333333222333444443344 38899999999988753
No 22
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=48.09 E-value=71 Score=29.19 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccC-CCC-
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENF---KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNI-ELL- 127 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~---~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~-~~l- 127 (295)
.-+..+.+++.||.+.||+ ||-+|-+=+ .-+.-.. .+.+.+.+.|.++ .+...++|+|+-+.-+. ..|
T Consensus 57 ~Nl~~l~~il~~n~~~~I~---~yRiSS~l~P~~thp~~~~-~~~~~~~~~l~~i---G~~a~~~~iRLS~HPgqF~vL~ 129 (310)
T 3tc3_A 57 SNLLCLKNILEWNLKHEIL---FFRISSNTIPLASHPKFHV-NWKDKLSHILGDI---GDFIKENSIRISMHPGQYVVLN 129 (310)
T ss_dssp HHHHHHHHHHHHHHHTTCC---EEECCTTSSTTTTSTTCCC-CHHHHTHHHHHHH---HHHHHHTTCEEEECCCTTCCTT
T ss_pred HHHHHHHHHHHHHHHcCCE---EEEeCcccCCCcccccccc-chHHHHHHHHHHH---HHHHHHcCcEEEecCCCCccCC
Confidence 4588899999999999997 566665322 1111000 1122333334332 34577899998886653 223
Q ss_pred ---CHHHHHHHHHHHHhc-----cC-CCceEEEEEecCCCHHHH
Q psy16152 128 ---PSDLIASFKEAMHIT-----KD-NTEGFLNVAFSYTSRDEM 162 (295)
Q Consensus 128 ---p~~~~~~~~~~e~~T-----~~-~~~~~lni~~~y~Gr~eI 162 (295)
|+-+.+++.+++... -+ ...+.|.+-..||+|++-
T Consensus 130 S~~~~Vv~~SI~dL~yHa~~ld~mG~~~~i~IH~Gg~yGdK~~a 173 (310)
T 3tc3_A 130 SVREEVVRSSIMELKYHADLLDSMGIEGKIQIHVGSSMNGKEES 173 (310)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCCcCceeecCCcCCCHHHH
Confidence 344555666655421 12 134555566679998754
No 23
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=47.13 E-value=1.6e+02 Score=26.47 Aligned_cols=106 Identities=15% Similarity=0.213 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+... ..+.| +.|-.+. ++.
T Consensus 40 iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~-----------grvpV-iaGvg~~---st~ 104 (315)
T 3si9_A 40 IDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVA-----------KRVPV-VAGAGSN---STS 104 (315)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSCB-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCCC---CHH
Confidence 45789999999999999999999998999999999999988776654321 12333 3343322 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.++|++-.+.+++.+
T Consensus 105 ~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~ 147 (315)
T 3si9_A 105 EAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAI 147 (315)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcC
Confidence 444444333333344444443333 47889999999988863
No 24
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=47.08 E-value=1.3e+02 Score=26.63 Aligned_cols=106 Identities=16% Similarity=0.174 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+. ++.
T Consensus 21 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-----------~gr~pv-iaGvg~~---~t~ 85 (294)
T 3b4u_A 21 VDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAG-----------IAPSRI-VTGVLVD---SIE 85 (294)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTT-----------CCGGGE-EEEECCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHh-----------CCCCcE-EEeCCCc---cHH
Confidence 4578899999999999999999999999999999999988876654421 112222 3343221 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC---CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY---TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y---~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.+++.+-.+.+++.+
T Consensus 86 ~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~ 129 (294)
T 3b4u_A 86 DAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKI 129 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc
Confidence 344433333333333433333233 36789998888888764
No 25
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=46.68 E-value=1.6e+02 Score=26.23 Aligned_cols=106 Identities=20% Similarity=0.199 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+... ..+.| +.|-.+. ++.
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~-----------grvpV-iaGvg~~---~t~ 94 (301)
T 1xky_A 30 IDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVD-----------KRVPV-IAGTGSN---NTH 94 (301)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCCS---CHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCceE-EeCCCCC---CHH
Confidence 45788999999999999999999998999999999999988776654321 12332 3443222 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| .+.++|.+-.+.+++.+
T Consensus 95 ~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 137 (301)
T 1xky_A 95 ASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAEST 137 (301)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 444444433333444444444334 37899999999998753
No 26
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=45.31 E-value=1.5e+02 Score=26.58 Aligned_cols=106 Identities=14% Similarity=0.102 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+.=..+..
T Consensus 29 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~-----------~grvpv-iaGvg~~~t~~ai 96 (318)
T 3qfe_A 29 LDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAV-----------GPDFPI-MAGVGAHSTRQVL 96 (318)
T ss_dssp ECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHH-----------CTTSCE-EEECCCSSHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHh-----------CCCCcE-EEeCCCCCHHHHH
Confidence 4578999999999999999999999999999999999998877665432 122333 3453332233333
Q ss_pred HHHHHHHHhccCCCceEEEEEecC----CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY----TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y----~Gr~eIv~a~r~l~~~v 173 (295)
+..+.+++. ..+..+-+.=.| .+.+++++-.+.+++.+
T Consensus 97 ~la~~a~~~---Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~ 138 (318)
T 3qfe_A 97 EHINDASVA---GANYVLVLPPAYFGKATTPPVIKSFFDDVSCQS 138 (318)
T ss_dssp HHHHHHHHH---TCSEEEECCCCC---CCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHc---CCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhC
Confidence 333333332 333334333324 25789999999998863
No 27
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=44.78 E-value=1.1e+02 Score=27.11 Aligned_cols=105 Identities=23% Similarity=0.318 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+... ..+.| +.|-.+ .++.
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------gr~pv-i~Gvg~---~~t~ 83 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVN-----------KRIPV-IAGTGS---NNTA 83 (291)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSCE-EEECCC---SSHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCc---ccHH
Confidence 46788999999999999999999999999999999999888776654321 12332 344322 2234
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDG 172 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~ 172 (295)
++++.+....+...+..+-+.=.| -+.+++.+-.+.+++.
T Consensus 84 ~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a 125 (291)
T 3a5f_A 84 ASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDA 125 (291)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGG
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence 444444443333444445444445 3888898888887765
No 28
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=44.54 E-value=1.7e+02 Score=25.95 Aligned_cols=106 Identities=13% Similarity=0.244 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+. ++.
T Consensus 25 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-----------~grvpv-iaGvg~~---~t~ 89 (297)
T 3flu_A 25 IHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHV-----------AKRVPV-IAGTGAN---NTV 89 (297)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-----------TTSSCE-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHh-----------CCCCcE-EEeCCCc---CHH
Confidence 4578899999999999999999999999999999999998877665432 122333 3343322 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.+++++-.+.+++.+
T Consensus 90 ~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~ 132 (297)
T 3flu_A 90 EAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEAT 132 (297)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 444444443333344444443333 47889999999998863
No 29
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=43.83 E-value=1.8e+02 Score=26.02 Aligned_cols=124 Identities=9% Similarity=0.124 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+-.-++|...-+.+|-..+++...+.. ...+.| +.|-.+. ++.
T Consensus 26 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~-----------~grvpv-iaGvg~~---~t~ 90 (309)
T 3fkr_A 26 LDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHV-----------AGRVPV-IVTTSHY---STQ 90 (309)
T ss_dssp BCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHH-----------TTSSCE-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHh-----------CCCCcE-EEecCCc---hHH
Confidence 4578899999999999999999999899999999999998877654432 122333 3343222 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC-----CCHHHHHHHHHHHHHhhh------hCCCCCCCCCHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY-----TSRDEMVETSRILIDGLR------TNKITNEDVTMDLFDKC 191 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y-----~Gr~eIv~a~r~l~~~v~------~~~l~~~dI~~~~i~~~ 191 (295)
++++.+....+...+..+-+.-.| -+.++|++-.+.+++.+. +.-.+--+++.+.+.+.
T Consensus 91 ~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l~~~~~~~L 160 (309)
T 3fkr_A 91 VCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARM 160 (309)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCHHHHHHH
Confidence 444444433333444444443334 278999999999988631 11012345776666543
No 30
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=42.76 E-value=1.5e+02 Score=26.64 Aligned_cols=105 Identities=12% Similarity=0.107 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|-+-.-++|...-+.+|-..+++...+.. ...+.| +.|-.+ ++.
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~-----------~grvpV-iaGvg~----st~ 93 (314)
T 3d0c_A 30 IDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELV-----------NGRATV-VAGIGY----SVD 93 (314)
T ss_dssp BCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHH-----------TTSSEE-EEEECS----SHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHh-----------CCCCeE-EecCCc----CHH
Confidence 4578899999999999999998888888988999999988877655432 122333 334322 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.++|.+-.+.+++.+
T Consensus 94 ~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 136 (314)
T 3d0c_A 94 TAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEAL 136 (314)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 444444433333344444443334 37899999999998763
No 31
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=42.49 E-value=1.8e+02 Score=25.62 Aligned_cols=103 Identities=17% Similarity=0.058 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. .| -+.|-.+. ++.
T Consensus 16 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~------------~g---vi~Gvg~~---~t~ 77 (286)
T 2r91_A 16 LDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAA------------RR---VIVQVASL---NAD 77 (286)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHC------------SS---EEEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHh------------CC---EEEeeCCC---CHH
Confidence 4578899999999999999999999899999999999988876654321 22 34554322 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC---CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY---TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y---~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.+++.+-.+.+++.+
T Consensus 78 ~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~ 121 (286)
T 2r91_A 78 EAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAV 121 (286)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc
Confidence 444443333333334444333334 36799999999998863
No 32
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=40.90 E-value=2e+02 Score=25.67 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|-+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+.=..+..
T Consensus 33 iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~-----------~grvpv-iaGvg~~~t~~ai 100 (304)
T 3l21_A 33 LDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAV-----------GDRARV-IAGAGTYDTAHSI 100 (304)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-----------TTTSEE-EEECCCSCHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHh-----------CCCCeE-EEeCCCCCHHHHH
Confidence 4578999999999999999999999899999999999998877665432 123443 4453322233444
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
+..+.+++. ..+..+-+.=.| .+.+++++-.+.+++.+
T Consensus 101 ~la~~a~~~---Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 140 (304)
T 3l21_A 101 RLAKACAAE---GAHGLLVVTPYYSKPPQRGLQAHFTAVADAT 140 (304)
T ss_dssp HHHHHHHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 444444433 333334333233 36899999999998763
No 33
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=40.90 E-value=1.9e+02 Score=25.60 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+-.-++|...-+.+|-..+++...+... ...+.| +.|-.+. ++.
T Consensus 25 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~----------g~rvpv-iaGvg~~---~t~ 90 (301)
T 3m5v_A 25 VDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCK----------GTKVKV-LAGAGSN---ATH 90 (301)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHT----------TSSCEE-EEECCCS---SHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC----------CCCCeE-EEeCCCC---CHH
Confidence 45788999999999999999999988899999999999988776654321 103444 4453322 234
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.+++++-.+.+++.+
T Consensus 91 ~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 133 (301)
T 3m5v_A 91 EAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSV 133 (301)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 444444443333444444444334 37889999999998863
No 34
>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2
Probab=40.29 E-value=23 Score=28.98 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=26.6
Q ss_pred EEecCCCHHHHHHHHHHHHHh-hhhCCCCCCCCC
Q psy16152 152 VAFSYTSRDEMVETSRILIDG-LRTNKITNEDVT 184 (295)
Q Consensus 152 i~~~y~Gr~eIv~a~r~l~~~-v~~~~l~~~dI~ 184 (295)
+.+.-+.+++|.+|+++|.++ ++.|+++++||-
T Consensus 39 tTve~Nt~e~I~~At~ELl~eii~~N~l~~eDIv 72 (148)
T 1xho_A 39 TTVSDNTADEIVAETQKLLKEMAEKNGLEEDDII 72 (148)
T ss_dssp EECSSSSHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred eEcCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEE
Confidence 455789999999999999877 467888887753
No 35
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=39.15 E-value=2.1e+02 Score=25.59 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+. ++.
T Consensus 41 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~-----------~grvpV-iaGvg~~---st~ 105 (314)
T 3qze_A 41 LDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQV-----------KGRIPV-IAGTGAN---STR 105 (314)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHH-----------TTSSCE-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHh-----------CCCCcE-EEeCCCc---CHH
Confidence 4578899999999999999999999899999999999998877665432 122333 3453322 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.+++++-.+.+++.+
T Consensus 106 eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 148 (314)
T 3qze_A 106 EAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAV 148 (314)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 444443333333344444443334 36789999999998863
No 36
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=38.34 E-value=1.6e+02 Score=24.07 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHHHHH
Q psy16152 56 DKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASF 135 (295)
Q Consensus 56 ~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~~~~ 135 (295)
......+..+.+.|++.|.|=++|+.++.-|++++...| .++++.+ ......|.++- +.++..+.+
T Consensus 89 ~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~~i---~~~l~~~-------~~~~~~V~iv~----fd~~~~~~~ 154 (168)
T 3gqe_A 89 EAYESIAKIVNDNNYKSVAIPLLSTGIFSGNKDRLTQSL---NHLLTAL-------DTTDADVAIYC----RDKKWEMTL 154 (168)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECTTSSTTSCSSCCHHHHH---HHHHHHH-------TTSCCEEEEEE----SCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHH---HHHHHHC-------CCCCCeEEEEE----cCHHHHHHH
Confidence 345566677788999999999999999999999998755 3444322 11223455553 456666666
Q ss_pred HHHHHhc
Q psy16152 136 KEAMHIT 142 (295)
Q Consensus 136 ~~~e~~T 142 (295)
.++....
T Consensus 155 ~~~~~~~ 161 (168)
T 3gqe_A 155 KEAVARR 161 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 6655443
No 37
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=38.14 E-value=2.2e+02 Score=25.48 Aligned_cols=106 Identities=14% Similarity=0.219 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+... ..+.| +.|-.+. ++.
T Consensus 42 iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~-----------grvpV-iaGvg~~---~t~ 106 (315)
T 3na8_A 42 LDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVA-----------HRVPT-IVSVSDL---TTA 106 (315)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHT-----------TSSCB-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-----------CCCcE-EEecCCC---CHH
Confidence 45789999999999999999999999999999999999988776655321 12332 3343222 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.+++++-.+.+++.+
T Consensus 107 ~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 149 (315)
T 3na8_A 107 KTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAI 149 (315)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 344443333333334444333333 36899999999998863
No 38
>3pzj_A Probable acetyltransferases; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: MSE; 1.85A {Chromobacterium violaceum}
Probab=37.91 E-value=69 Score=25.68 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=28.5
Q ss_pred hhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 47 TIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 47 ~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
...|.-.|.+.+..++.|+.+.|++.|.+.....
T Consensus 130 ~~~g~Gig~~ll~~l~~~a~~~g~~~i~l~v~~~ 163 (209)
T 3pzj_A 130 ALRRTRLATEAVFLLLKTAFELGYRRCEWRCDSR 163 (209)
T ss_dssp TTTTSHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCcEEEEeecCC
Confidence 3455656888899999999999999999998764
No 39
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=37.81 E-value=2.1e+02 Score=25.21 Aligned_cols=103 Identities=15% Similarity=0.004 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|-+..-++|...-+.+|-..+++...+. . .| -+.|-.+ .++.
T Consensus 17 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~----------~--~g---viaGvg~---~~t~ 78 (293)
T 1w3i_A 17 IDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDV----------T--NK---IIFQVGG---LNLD 78 (293)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTT----------C--SC---EEEECCC---SCHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH----------c--CC---EEEecCC---CCHH
Confidence 457889999999999999999999989999999999998877664331 1 23 3455332 2344
Q ss_pred HHHHHHHHhccCCCceEEEEEecC---CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY---TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y---~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.++|.+-.+.+++.+
T Consensus 79 ~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~ 122 (293)
T 1w3i_A 79 DAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVS 122 (293)
T ss_dssp HHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhC
Confidence 455555544444444544444344 36799999999998863
No 40
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=36.05 E-value=2.4e+02 Score=25.20 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+. . ..+.| +.|-.+.=..+..
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~----------~--grvpV-iaGvg~~~t~~ai 92 (313)
T 3dz1_A 26 IDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKR----------A--KSMQV-IVGVSAPGFAAMR 92 (313)
T ss_dssp BCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHH----------C--TTSEE-EEECCCSSHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHH----------c--CCCcE-EEecCCCCHHHHH
Confidence 457899999999999999999999989999999999998887665432 1 23443 4454333233333
Q ss_pred HHHHHHHHhccCCCceEEEEE-ecCCCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVA-FSYTSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~-~~y~Gr~eIv~a~r~l~~~v 173 (295)
+..+.+++.- .+..+-+. ..+-+.+++++-.+.+++.+
T Consensus 93 ~la~~A~~~G---adavlv~~P~~~~s~~~l~~~f~~va~a~ 131 (313)
T 3dz1_A 93 RLARLSMDAG---AAGVMIAPPPSLRTDEQITTYFRQATEAI 131 (313)
T ss_dssp HHHHHHHHHT---CSEEEECCCTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC---CCEEEECCCCCCCCHHHHHHHHHHHHHhC
Confidence 3444443332 22222221 12347889999999888765
No 41
>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A
Probab=35.95 E-value=27 Score=27.93 Aligned_cols=32 Identities=19% Similarity=0.438 Sum_probs=25.7
Q ss_pred EecCCCHHHHHHHHHHHHHh-hhhCCCCCCCCC
Q psy16152 153 AFSYTSRDEMVETSRILIDG-LRTNKITNEDVT 184 (295)
Q Consensus 153 ~~~y~Gr~eIv~a~r~l~~~-v~~~~l~~~dI~ 184 (295)
.+.-+.+++|.+|+++|.++ ++.|+++++||-
T Consensus 11 tv~~Nt~e~I~~at~eLl~~i~~~N~l~~~dIv 43 (127)
T 1dbf_A 11 TVERDTEEEILQKTKQLLEKIIEENHTKPEDVV 43 (127)
T ss_dssp ECSSCCHHHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEE
Confidence 45678999999999999876 467788887753
No 42
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=35.44 E-value=2e+02 Score=25.39 Aligned_cols=103 Identities=10% Similarity=-0.027 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+. . .| -+.|-.+ .++.
T Consensus 17 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~----------~--~g---ViaGvg~---~~t~ 78 (288)
T 2nuw_A 17 VNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDV----------T--HK---LIFQVGS---LNLN 78 (288)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTT----------C--SC---EEEECCC---SCHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHH----------h--CC---eEEeeCC---CCHH
Confidence 457889999999999999999999989999999999998877654321 1 23 3455332 2334
Q ss_pred HHHHHHHHhccCCCceEEEEEecC---CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY---TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y---~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+...+..+-+.=.| -+.++|.+-.+.+++.+
T Consensus 79 ~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~ 122 (288)
T 2nuw_A 79 DVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARIS 122 (288)
T ss_dssp HHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc
Confidence 444444444333444444443334 46799999999998863
No 43
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=35.37 E-value=1.6e+02 Score=26.30 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+. ++.
T Consensus 25 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~-----------~grvpV-iaGvg~~---~t~ 89 (311)
T 3h5d_A 25 INFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVV-----------NGRVPL-IAGVGTN---DTR 89 (311)
T ss_dssp BCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHS-----------CSSSCE-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHh-----------CCCCcE-EEeCCCc---CHH
Confidence 3467899999999999999999999999999999999998876654421 122333 3343222 234
Q ss_pred HHHHHHHHhccCCC-ceEEEEEecC--CCHHHHHHHHHHHHHh
Q psy16152 133 ASFKEAMHITKDNT-EGFLNVAFSY--TSRDEMVETSRILIDG 172 (295)
Q Consensus 133 ~~~~~~e~~T~~~~-~~~lni~~~y--~Gr~eIv~a~r~l~~~ 172 (295)
++++.+....+-.. +..+-+.=.| -+.+++++-.+.+++.
T Consensus 90 ~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a 132 (311)
T 3h5d_A 90 DSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADA 132 (311)
T ss_dssp HHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence 44444444333222 3444333233 3678999999988875
No 44
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=33.53 E-value=46 Score=29.52 Aligned_cols=117 Identities=10% Similarity=0.134 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEeecC---CC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEE
Q psy16152 54 GFDKLAETLQWCLDLGVREVTVYAFSI---EN-----------FKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIR 119 (295)
Q Consensus 54 g~~~l~~ii~wc~~~GI~~lTvY~fS~---eN-----------~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir 119 (295)
.-+.|.++++|+ ..+.+.|+|..-.+ .| -++-..|++.+++-++..++++. ....+++|+
T Consensus 44 s~drl~~li~Wa-~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~~~~-----~~~~~~rv~ 117 (247)
T 3oqv_A 44 SQKNTVMLLQWA-GQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLESVG-----DHAERFRVR 117 (247)
T ss_dssp CHHHHHHHHHHH-HHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----TTGGGEEEE
T ss_pred CHHHHHHHHHHH-HccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCccCceee
Confidence 458899999999 67788888865433 11 12233566777766666655431 122344454
Q ss_pred EeccCCCCCHHHHHHHHHHHHhccCCCceEEEEEecCCCHHHHHHHHHHHHHhhhhCCC-CCCCCCHHHHHhh
Q psy16152 120 IIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKI-TNEDVTMDLFDKC 191 (295)
Q Consensus 120 ~iGd~~~lp~~~~~~~~~~e~~T~~~~~~~lni~~~y~Gr~eIv~a~r~l~~~v~~~~l-~~~dI~~~~i~~~ 191 (295)
-..|.. ..+..++....++..- .-.++.-++|.++...+..+++ ....++++.++..
T Consensus 118 ~~Sd~~-~~~~Y~~l~~~ve~a~--------------~~d~~fR~ac~~ms~~~l~~rl~~g~~~~e~~l~~a 175 (247)
T 3oqv_A 118 SLSELQ-ETPEYRAVRERTDRAF--------------EEDAEFATACEDMVRAVVMNRPGDGVGISAEHLRAG 175 (247)
T ss_dssp EHHHHT-TSHHHHHHHHHHHHHH--------------HHCHHHHHHHHHHHHHHHHTCSSSCCCCCHHHHHHH
T ss_pred eHHHhh-CCHHHHHHHHHHHHHH--------------hcCHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHH
Confidence 444442 3455666666665532 2235667777777777766666 3344677666543
No 45
>1ufy_A Chorismate mutase; shikimate pathway, mutant, riken structur genomics/proteomics initiative, RSGI, structural genomics,; HET: MES; 0.96A {Thermus thermophilus} SCOP: d.79.1.2 PDB: 1ode_A* 1ui9_A*
Probab=31.95 E-value=35 Score=27.05 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=25.4
Q ss_pred EecCCCHHHHHHHHHHHHHh-hhhCCCCC-CCCC
Q psy16152 153 AFSYTSRDEMVETSRILIDG-LRTNKITN-EDVT 184 (295)
Q Consensus 153 ~~~y~Gr~eIv~a~r~l~~~-v~~~~l~~-~dI~ 184 (295)
.+.-+.+++|.+|+++|.++ ++.|++++ +||-
T Consensus 10 tv~~n~~e~I~~at~eLl~~i~~~N~l~~~~div 43 (122)
T 1ufy_A 10 TVEEDTPEAIHQATRELLLKMLEANGIQSYEELA 43 (122)
T ss_dssp ECSSSSHHHHHHHHHHHHHHHHHHHTCCCGGGEE
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHhcCCCChHhEE
Confidence 45678999999999999876 46778888 7753
No 46
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=31.18 E-value=1.5e+02 Score=26.64 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|-+-.-++|...-+.+|-..+++...+.. ...+.| +.|-.+ ++.
T Consensus 30 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~-----------~grvpV-iaGvg~----~t~ 93 (316)
T 3e96_A 30 IDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYV-----------HGRALV-VAGIGY----ATS 93 (316)
T ss_dssp BCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHH-----------TTSSEE-EEEECS----SHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHh-----------CCCCcE-EEEeCc----CHH
Confidence 4578999999999999999998888888989999999998877655432 122333 344322 233
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
++++.+....+-..+..+-+.=.| -+.+++++-.+.+++.+
T Consensus 94 ~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 136 (316)
T 3e96_A 94 TAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEAL 136 (316)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 444443333222333333332223 37899999999998864
No 47
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=31.13 E-value=2.7e+02 Score=24.46 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+.=..+..
T Consensus 20 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~-----------~grvpv-iaGvg~~~t~~ai 87 (292)
T 3daq_A 20 VNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLV-----------DKRVPV-IAGTGTNDTEKSI 87 (292)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHH-----------TTSSCE-EEECCCSCHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHh-----------CCCCcE-EEeCCcccHHHHH
Confidence 4578899999999999999999999999999999999998877665432 122333 3443322223333
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
+..+.+++. ..+..+-+.-.| -+.++|++-.+.+++.+
T Consensus 88 ~la~~a~~~---Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~ 127 (292)
T 3daq_A 88 QASIQAKAL---GADAIMLITPYYNKTNQRGLVKHFEAIADAV 127 (292)
T ss_dssp HHHHHHHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 333333332 333344333233 47889999999998853
No 48
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=31.12 E-value=2.6e+02 Score=24.17 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCC-----CC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEec
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIE-----NF-KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIG 122 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~e-----N~-~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iG 122 (295)
...+.+.+.++.|.++|++.|.+..-+.. .| .++......-++.+.+.+.+++. ...+.||++-+-.
T Consensus 108 ~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---~a~~~Gv~l~lEn 180 (340)
T 2zds_A 108 RAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILD---VFDAEGVRFAHEV 180 (340)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHH---HHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHHHHHHHHHHHHHH---HHHHcCCEEEEEc
Confidence 45678999999999999999998542210 11 13322223333444455555432 3455688877654
No 49
>3q71_A Poly [ADP-ribose] polymerase 14; structural genomics, structural genomics consortium, SGC, transferase, PARP14 macro 2; HET: AR6; 2.20A {Homo sapiens}
Probab=30.43 E-value=1.5e+02 Score=25.51 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 55 FDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 55 ~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
.....+.+..|.+.|++.|.|=++|+.++.-|+++...+|
T Consensus 134 ~~~y~~~L~~A~e~~i~SIAfPaIsTG~~G~P~~~aA~i~ 173 (221)
T 3q71_A 134 EDIIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELI 173 (221)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECTTSSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCceEeeccccCCCCCCCHHHHHHHH
Confidence 3445566777888999999999999999999999987654
No 50
>2ge3_A Probable acetyltransferase; structural GEN PSI, protein structure initiative, midwest center for struc genomics, MCSG; HET: ACO; 2.25A {Agrobacterium tumefaciens} SCOP: d.108.1.1
Probab=30.11 E-value=51 Score=25.17 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=27.4
Q ss_pred hHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 48 IEGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 48 ~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
..|.-.|.+-+..+++++.+.|++.|.+...+.
T Consensus 97 ~rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~~ 129 (170)
T 2ge3_A 97 YRNKGLGARLMRRTLDAAHEFGLHRIELSVHAD 129 (170)
T ss_dssp GTTSSHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred HhCCCHHHHHHHHHHHHHHHCCceEEEEEEEcC
Confidence 345556788899999999999999999998764
No 51
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=29.92 E-value=3.1e+02 Score=24.71 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+.=..+..
T Consensus 52 iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~-----------~grvpV-iaGvg~~st~eai 119 (332)
T 2r8w_A 52 VDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATIL-----------RGRRTL-MAGIGALRTDEAV 119 (332)
T ss_dssp BCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-----------TTSSEE-EEEECCSSHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHh-----------CCCCcE-EEecCCCCHHHHH
Confidence 4578899999999999999999999999999999999998877665432 122333 3343222223333
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
+..+.+++. ..+..+-+.=.| -+.++|++-.+.+++.+
T Consensus 120 ~la~~A~~~---Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~ 159 (332)
T 2r8w_A 120 ALAKDAEAA---GADALLLAPVSYTPLTQEEAYHHFAAVAGAT 159 (332)
T ss_dssp HHHHHHHHH---TCSEEEECCCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 333333332 333333333334 37899999999998763
No 52
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=29.80 E-value=2.9e+02 Score=24.27 Aligned_cols=106 Identities=16% Similarity=0.227 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+.. ...+.| +.|-.+.=..+..
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~-----------~gr~pv-iaGvg~~~t~~ai 86 (291)
T 3tak_A 19 VDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVA-----------NKRIPI-IAGTGANSTREAI 86 (291)
T ss_dssp BCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-----------TTSSCE-EEECCCSSHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHh-----------CCCCeE-EEeCCCCCHHHHH
Confidence 4578899999999999999999988889988999999988876655432 112333 3453322223333
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
+..+.+++. ..+..+-+.=.| -+.+++++-.+.+++.+
T Consensus 87 ~la~~a~~~---Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~ 126 (291)
T 3tak_A 87 ELTKAAKDL---GADAALLVTPYYNKPTQEGLYQHYKAIAEAV 126 (291)
T ss_dssp HHHHHHHHH---TCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc---CCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence 333333332 333444343333 47899999999998863
No 53
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=29.45 E-value=3.4e+02 Score=25.02 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+-.-++|...-+.+|-..+++...+.. ...+.| +.|-.+. ++.
T Consensus 77 ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~-----------~grvpV-iaGvg~~---st~ 141 (360)
T 4dpp_A 77 FDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCF-----------GGSIKV-IGNTGSN---STR 141 (360)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHH-----------TTTSEE-EEECCCS---SHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHh-----------CCCCeE-EEecCCC---CHH
Confidence 4578999999999999999999999889988999999988776654432 123443 3343222 234
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDG 172 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~ 172 (295)
++++.+....+...+..+-+.=.| -+.+++++-.+.+++.
T Consensus 142 eai~la~~A~~~Gadavlvv~PyY~k~sq~gl~~hf~~IA~a 183 (360)
T 4dpp_A 142 EAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLHM 183 (360)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence 444444443333444444443334 3788999888888774
No 54
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=29.22 E-value=1.9e+02 Score=23.35 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 55 FDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 55 ~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
...+.+++..+.+.|++.|.|=.+++.++.-|.+++..+|
T Consensus 105 ~~~l~~~l~~a~~~~~~sIa~P~IgtGi~G~p~~~v~~ii 144 (160)
T 2jyc_A 105 QKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMI 144 (160)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESCCSSCSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHH
Confidence 3445666677888899999999999999999999998765
No 55
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=29.09 E-value=2.1e+02 Score=22.54 Aligned_cols=71 Identities=8% Similarity=0.086 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEe---ecCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCC--cEEEEeccCCCCCH
Q psy16152 56 DKLAETLQWCLDLGVREVTVYA---FSIENF-KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKG--IRIRIIGNIELLPS 129 (295)
Q Consensus 56 ~~l~~ii~wc~~~GI~~lTvY~---fS~eN~-~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~--i~ir~iGd~~~lp~ 129 (295)
.....+-.||...|+..+-+|. .|+.++ +|| ++..|++.+ .... +.+-++-++|+|..
T Consensus 26 ~Q~~~l~~~a~~~g~~i~~~~~D~g~Sg~~~~~Rp--~l~~ll~~~--------------~~g~~~~d~lvv~~ldRl~R 89 (167)
T 3guv_A 26 AQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGRI--QFNRMMEDI--------------KSGKDGVSFVLVFKLSRFAR 89 (167)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCCSSSSSCCCH--HHHHHHHHH--------------HTCTTCCSEEEESCGGGTCS
T ss_pred HHHHHHHHHHHhCCCEEEEEEeecCCCCCCcccCH--HHHHHHHHH--------------HcCCCCccEEEEEeCchhcC
Confidence 3356677889999998887875 577775 564 344443322 1222 66778889998888
Q ss_pred HHHHHHHHHHHhc
Q psy16152 130 DLIASFKEAMHIT 142 (295)
Q Consensus 130 ~~~~~~~~~e~~T 142 (295)
+..+.+.-++...
T Consensus 90 ~~~~~~~~~~~l~ 102 (167)
T 3guv_A 90 NAADVLSTLQIMQ 102 (167)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7766655544443
No 56
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=28.45 E-value=1.4e+02 Score=23.67 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 55 FDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 55 ~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
...+.++++.+.+.|++.|.|=.+++.+..-+.+++..+|
T Consensus 94 ~~~l~~~l~~a~~~~~~sIa~P~IgtG~~G~~~~~v~~ii 133 (149)
T 2eee_A 94 QKSLEAMKSHCLKNGVTDLSMPRIGCGLDRLQWENVSAMI 133 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEECCCCCCTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHH
Confidence 4456667777888999999999999999999999998865
No 57
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=28.41 E-value=1.5e+02 Score=25.02 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 56 DKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 56 ~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
..+.+.+..|.+.|++.|.|=++|+.++.-|++++..+|
T Consensus 115 ~~y~~~L~~a~~~~i~SIAfP~IgtG~~G~p~~~aa~i~ 153 (199)
T 3kh6_A 115 KTVTSVLEECEQRKYTSVSLPAIGTGNAGKNPITVADNI 153 (199)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEeecccccCCCCcCHHHHHHHH
Confidence 445566777889999999999999999999999998754
No 58
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=28.25 E-value=3.1e+02 Score=24.16 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCCeEEEEeecC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEE-----eccC--CCC
Q psy16152 60 ETLQWCLDLGVREVTVYAFSI-----ENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRI-----IGNI--ELL 127 (295)
Q Consensus 60 ~ii~wc~~~GI~~lTvY~fS~-----eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~-----iGd~--~~l 127 (295)
+-++.+.++|++.|.+|+-+. .|++++.+|.-..+..+.+ ..++.|+.|+. .|.. ..-
T Consensus 87 ~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~----------~a~~~G~~V~~~l~~~~~~e~~~~~ 156 (302)
T 2ftp_A 87 KGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLE----------AARQHQVRVRGYISCVLGCPYDGDV 156 (302)
T ss_dssp HHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHH----------HHHHTTCEEEEEEECTTCBTTTBCC
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHH----------HHHHCCCeEEEEEEEEeeCCcCCCC
Confidence 456678889999999987554 3788888877554433333 23456777652 2211 123
Q ss_pred -CHHHHHHHHHHHHhccCCCceEEEEEecCC--CHHHHHHHHHHHH
Q psy16152 128 -PSDLIASFKEAMHITKDNTEGFLNVAFSYT--SRDEMVETSRILI 170 (295)
Q Consensus 128 -p~~~~~~~~~~e~~T~~~~~~~lni~~~y~--Gr~eIv~a~r~l~ 170 (295)
|+.+.+.++.+.+... -.|+++-..| -=.++.+.++.+.
T Consensus 157 ~~~~~~~~~~~~~~~G~----d~i~l~DT~G~~~P~~~~~lv~~l~ 198 (302)
T 2ftp_A 157 DPRQVAWVARELQQMGC----YEVSLGDTIGVGTAGATRRLIEAVA 198 (302)
T ss_dssp CHHHHHHHHHHHHHTTC----SEEEEEESSSCCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCC----CEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 3444444444444322 2577775444 3334444454443
No 59
>2ae6_A Acetyltransferase, GNAT family; GCN5-related N-acetyltransferase (GNAT), alpha-beta, structu genomics, PSI, protein structure initiative; HET: GOL; 2.19A {Enterococcus faecalis} SCOP: d.108.1.1
Probab=28.01 E-value=58 Score=24.97 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=27.2
Q ss_pred hHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 48 IEGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 48 ~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
..|.-.|-.-+..++.++.+.|++.|.+..++.
T Consensus 93 ~rg~GiG~~ll~~~~~~a~~~g~~~i~l~v~~~ 125 (166)
T 2ae6_A 93 FQDQGIGGSLLSYIKDMAEISGIHKLSLRVMAT 125 (166)
T ss_dssp GTTSSHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred HhCCCHHHHHHHHHHHHHHHCCCCEEEEEeecC
Confidence 345556788899999999999999999998765
No 60
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=27.88 E-value=2.1e+02 Score=24.27 Aligned_cols=62 Identities=11% Similarity=0.189 Sum_probs=39.3
Q ss_pred HHhhHHHHHHHHHHHHhcCCCeEEEEe-ecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEec
Q psy16152 51 HSKGFDKLAETLQWCLDLGVREVTVYA-FSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIG 122 (295)
Q Consensus 51 h~~g~~~l~~ii~wc~~~GI~~lTvY~-fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iG 122 (295)
.....+.+.+.++.|.++|++.|.+.. +..++ ..+..+.+ .+.+.+++ +...+.||++-+-.
T Consensus 97 r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~---~~~~~~~~----~~~l~~l~---~~a~~~Gv~l~lE~ 159 (290)
T 3tva_A 97 RASRVAEMKEISDFASWVGCPAIGLHIGFVPES---SSPDYSEL----VRVTQDLL---THAANHGQAVHLET 159 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCT---TSHHHHHH----HHHHHHHH---HHHHTTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCCCCccc---chHHHHHH----HHHHHHHH---HHHHHcCCEEEEec
Confidence 456789999999999999999999853 22222 22333333 33344443 23557888876654
No 61
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=27.78 E-value=1.3e+02 Score=21.55 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHhcCCCeEEE
Q psy16152 54 GFDKLAETLQWCLDLGVREVTV 75 (295)
Q Consensus 54 g~~~l~~ii~wc~~~GI~~lTv 75 (295)
-+..+.++++.|..+|+..|++
T Consensus 69 ~y~~vv~vmd~l~~aG~~~v~l 90 (99)
T 2pfu_A 69 DYETLMKVMDTLHQAGYLKIGL 90 (99)
T ss_dssp CHHHHHHHHHHHHHTCCCCEEC
T ss_pred CHHHHHHHHHHHHHcCCCeEEE
Confidence 4688999999999999999984
No 62
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=27.25 E-value=22 Score=27.41 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhhhCCCCCCCCCH
Q psy16152 160 DEMVETSRILIDGLRTNKITNEDVTM 185 (295)
Q Consensus 160 ~eIv~a~r~l~~~v~~~~l~~~dI~~ 185 (295)
.|+.+-+|.|.+.+..|++++|+++.
T Consensus 25 pev~~~Vr~LVq~Ll~~~i~~EeFt~ 50 (105)
T 2h7b_A 25 PEIGERVRTLVLGLVNSTLTIEEFHS 50 (105)
T ss_dssp HHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 46778888888888777765555443
No 63
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=27.05 E-value=1.3e+02 Score=28.37 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHhcCCCeEEEEeecCC
Q psy16152 54 GFDKLAETLQWCLDLGVREVTVYAFSIE 81 (295)
Q Consensus 54 g~~~l~~ii~wc~~~GI~~lTvY~fS~e 81 (295)
..+.+.+.++.+.++|+..|++|.++..
T Consensus 218 t~e~~~~tl~~~~~l~~~~i~~y~l~~~ 245 (457)
T 1olt_A 218 TPESFAFTLKRVAELNPDRLSVFNYAHL 245 (457)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEEECCCC
T ss_pred CHHHHHHHHHHHHhcCcCEEEeecCcCC
Confidence 4688999999999999999999999843
No 64
>2bei_A Diamine acetyltransferase 2; SSAT2, BC011751, AAH11751, thialysine N-acetyltransferase, structural genomics, protein structure initiative, PSI; HET: ACO; 1.84A {Homo sapiens} SCOP: d.108.1.1 PDB: 2q4v_A*
Probab=26.96 E-value=63 Score=25.07 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=27.2
Q ss_pred hHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 48 IEGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 48 ~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
..|.-.|-.-+..+++|+.+.|++.|.+..++.
T Consensus 100 ~rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~ 132 (170)
T 2bei_A 100 YRGQGIGSKIIKKVAEVALDKGCSQFRLAVLDW 132 (170)
T ss_dssp GCSSSHHHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred hcCCCHHHHHHHHHHHHHHHCCCCEEEEEEecc
Confidence 345556788899999999999999999988764
No 65
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=26.78 E-value=52 Score=21.84 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy16152 85 RTEEEVNGLMDLARAKFKR 103 (295)
Q Consensus 85 R~~~Ev~~L~~l~~~~l~~ 103 (295)
++.+||..+|+++++-++.
T Consensus 32 ktdqEV~~~Memf~EDi~s 50 (53)
T 1r4g_A 32 KTDQEVKAVMELVEEDIES 50 (53)
T ss_dssp CSSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 4569999999998876643
No 66
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=26.73 E-value=1.8e+02 Score=25.25 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=37.1
Q ss_pred HhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcE--EEE
Q psy16152 52 SKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIR--IRI 120 (295)
Q Consensus 52 ~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~--ir~ 120 (295)
....+.+.+.++.|.++|++.|.+..... ..+.+.... +.+.|.+++ +...+.||+ +-+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~~---~~~~~~~~~----~~~~l~~l~---~~a~~~Gv~~~l~~ 164 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLGCKYLIQPMMPT---ITTHDEAKL----VCDIFNQAS---DVIKAEGIATGFGY 164 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECSCCC---CCSHHHHHH----HHHHHHHHH---HHHHHTTCTTCEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCCC---CCCHHHHHH----HHHHHHHHH---HHHHHCCCcceEEE
Confidence 45678899999999999999998843221 123333333 334444443 234567887 755
No 67
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=26.68 E-value=1.1e+02 Score=23.49 Aligned_cols=65 Identities=12% Similarity=0.324 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEe---ecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 56 DKLAETLQWCLDLGVREVTVYA---FSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 56 ~~l~~ii~wc~~~GI~~lTvY~---fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
.....+-+||...|+..+-+|. .|+.|++||. +..|++ .+.+..+.+-++-++++|..+..
T Consensus 25 ~Q~~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~--l~~ll~--------------~~~~g~~d~lvv~~ldRl~R~~~ 88 (138)
T 3bvp_A 25 EQIDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPA--MQRLIN--------------DIENKAFDTVLVYKLDRLSRSVR 88 (138)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEETCCSSSSCCHH--HHHHHH--------------GGGGTSCSEEEESSHHHHCSCHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHH--HHHHHH--------------HHHhCCCCEEEEEeCCcccccHH
Confidence 3455677899999998888884 5888887753 333332 23344556678888888777765
Q ss_pred HHHH
Q psy16152 133 ASFK 136 (295)
Q Consensus 133 ~~~~ 136 (295)
..+.
T Consensus 89 ~~~~ 92 (138)
T 3bvp_A 89 DTLY 92 (138)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5333
No 68
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=26.31 E-value=50 Score=30.16 Aligned_cols=83 Identities=14% Similarity=0.090 Sum_probs=46.4
Q ss_pred CCCEEEEEEcCCh-hhHHhcCCchhHhHHhhHHH-H------------HHHHHHHHhcCCCeEEEEeecCCCCCCCHHHH
Q psy16152 25 VPKHIAFIMDGNR-RYAKRSNAKTIEGHSKGFDK-L------------AETLQWCLDLGVREVTVYAFSIENFKRTEEEV 90 (295)
Q Consensus 25 iP~HIavImDGnr-R~A~~~g~~~~~Gh~~g~~~-l------------~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev 90 (295)
-|.||||+.|+.+ ..=|..=.+...|++..... + .-+-+++..+||+.+.+= --|-
T Consensus 62 ~P~~iavaFD~~~~~tfR~elyp~YKanR~~~PeeL~~Q~~~l~~Qi~p~ike~l~a~gi~~l~~~----------G~EA 131 (305)
T 3h7i_A 62 GYTKIVLCIDNAKSGYWRRDFAYYYKKNRGKAREESTWDWEGYFESSHKVIDELKAYMPYIVMDID----------KYEA 131 (305)
T ss_dssp TCCEEEEECCCCTTCCHHHHHSTTTTHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHSSSEEECCT----------TCCH
T ss_pred CCCEEEEEecCCCCcchHhhhCHHhccCCCCCCHHHHHHHHHhhhhhHHHHHHHHHHCCCCEEccC----------CccH
Confidence 5999999999752 22233334555566655432 1 234455667899877632 2455
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhCCcEE-EEeccCCCC
Q psy16152 91 NGLMDLARAKFKRLIEEKDKLNEKGIRI-RIIGNIELL 127 (295)
Q Consensus 91 ~~L~~l~~~~l~~~~~~~~~~~~~~i~i-r~iGd~~~l 127 (295)
+.++..+.... .+.|.+| -+.||.|++
T Consensus 132 DDiIgTLA~~a----------~~~g~~V~IvSgDKDl~ 159 (305)
T 3h7i_A 132 NDHIAVLVKKF----------SLEGHKILIISSDGDFT 159 (305)
T ss_dssp HHHHHHHHHHH----------HHTTCCEEEECSSCCCG
T ss_pred HHHHHHHHHHH----------HHCCCcEEEEeCCCCcc
Confidence 66665544332 1234443 366787764
No 69
>2j8m_A Acetyltransferase PA4866 from P. aeruginosa; GCN5 family, phosphinothricin, methionine sulfone, methionine sulfoximine; 1.44A {Pseudomonas aeruginosa} PDB: 2bl1_A 2j8n_A 2j8r_A* 1yvo_A
Probab=26.00 E-value=65 Score=24.71 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=26.8
Q ss_pred HhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 49 EGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 49 ~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
.|.-.|-+-+..+++|+.+.|+..|.++.+..
T Consensus 95 rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~~ 126 (172)
T 2j8m_A 95 RGKGLGVQLLQALIERARAQGLHVMVAAIESG 126 (172)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred cCCCHHHHHHHHHHHHHHHCCccEEEEEEcCC
Confidence 44445788899999999999999999988764
No 70
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=25.78 E-value=2.9e+02 Score=23.09 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.4
Q ss_pred HHhhHHHHHHHHHHHHhcCCCeEEEEee
Q psy16152 51 HSKGFDKLAETLQWCLDLGVREVTVYAF 78 (295)
Q Consensus 51 h~~g~~~l~~ii~wc~~~GI~~lTvY~f 78 (295)
.....+.+.+.++.|.++|++.|.+..+
T Consensus 83 r~~~~~~~~~~i~~a~~lG~~~v~~~~~ 110 (290)
T 2qul_A 83 RDAGTEYVKRLLDDCHLLGAPVFAGLTF 110 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeecc
Confidence 4566789999999999999999987543
No 71
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.68 E-value=2.2e+02 Score=21.56 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=28.7
Q ss_pred hhhhhCCcEEEEeccCCCCCHHHHHHHHHHHHhccCC-CceEEEEEecCCCHHHHHHHHHH
Q psy16152 109 DKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDN-TEGFLNVAFSYTSRDEMVETSRI 168 (295)
Q Consensus 109 ~~~~~~~i~ir~iGd~~~lp~~~~~~~~~~e~~T~~~-~~~~lni~~~y~Gr~eIv~a~r~ 168 (295)
+.+.++|.++|.+.. |.++.+.+++ ..+.+ ..+.+. -.+.++---.|++-
T Consensus 20 diikkngfkvrtvrs----pqelkdsiee---lvkkynativvv---vvddkewaekairf 70 (134)
T 2l69_A 20 DIIKKNGFKVRTVRS----PQELKDSIEE---LVKKYNATIVVV---VVDDKEWAEKAIRF 70 (134)
T ss_dssp HHHHHTTCEEEEECS----HHHHHHHHHH---HTTCCCCEEEEE---ECSSHHHHHHHHHH
T ss_pred HHHHhcCceEEEecC----HHHHHHHHHH---HHHHhCCeEEEE---EEccHHHHHHHHHH
Confidence 456789999999864 7777766654 33333 333332 23555544445443
No 72
>3fbu_A Acetyltransferase, GNAT family; structur genomics, PSI2, MCSG, protein structure initiative, midwest for structural genomics; HET: COA; 1.80A {Bacillus anthracis str}
Probab=25.41 E-value=1.1e+02 Score=22.74 Aligned_cols=33 Identities=6% Similarity=0.014 Sum_probs=26.4
Q ss_pred hHhHHhhHHHHHHHHHHHHhc-CCCeEEEEeecC
Q psy16152 48 IEGHSKGFDKLAETLQWCLDL-GVREVTVYAFSI 80 (295)
Q Consensus 48 ~~Gh~~g~~~l~~ii~wc~~~-GI~~lTvY~fS~ 80 (295)
..|...|..-+..++.|+.+. |++.|.+...+.
T Consensus 94 ~rg~Gig~~ll~~~~~~a~~~~~~~~i~l~v~~~ 127 (168)
T 3fbu_A 94 YFNKGYASEAAQATLKYGFKEMKLHRIIATCQPE 127 (168)
T ss_dssp GTTSSHHHHHHHHHHHHHHHTSCCSEEEEEECTT
T ss_pred HhcCCHHHHHHHHHHHHHHhhCCceEEEEEeccC
Confidence 344445788899999999876 999999998764
No 73
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=25.02 E-value=2.4e+02 Score=24.50 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=36.8
Q ss_pred HhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEE
Q psy16152 52 SKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRI 120 (295)
Q Consensus 52 ~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~ 120 (295)
....+.+.+.++.|.++|++.|.+-... -..+.++... +.+.|.++. +...+.||++-+
T Consensus 110 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~---~~~~~~~~~~----~~~~l~~l~---~~a~~~Gv~l~l 168 (305)
T 3obe_A 110 PKFDEFWKKATDIHAELGVSCMVQPSLP---RIENEDDAKV----VSEIFNRAG---EITKKAGILWGY 168 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEECCCC---CCSSHHHHHH----HHHHHHHHH---HHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeCCCC---CCCCHHHHHH----HHHHHHHHH---HHHHHcCCEEEE
Confidence 3457889999999999999999973211 1123333333 334444443 235578888765
No 74
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=24.92 E-value=2.9e+02 Score=23.12 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=30.7
Q ss_pred EEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHH
Q psy16152 29 IAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNG 92 (295)
Q Consensus 29 IavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~ 92 (295)
|||||.+.. .+..+.+....+.++||++- +...| -.|.++++..
T Consensus 25 V~IimGS~S----------------D~~v~~~a~~~L~~~gI~~e-~~V~S---AHRtp~~l~~ 68 (181)
T 4b4k_A 25 VGVIMGSTS----------------DWETMKYACDILDELNIPYE-KKVVS---AHRTPDYMFE 68 (181)
T ss_dssp EEEEESSGG----------------GHHHHHHHHHHHHHTTCCEE-EEECC---TTTSHHHHHH
T ss_pred EEEEECCHh----------------HHHHHHHHHHHHHHcCCCee-EEEEc---cccChHHHHH
Confidence 999998875 34667777788889999952 23333 4588886554
No 75
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=24.74 E-value=3.6e+02 Score=23.77 Aligned_cols=106 Identities=13% Similarity=0.133 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEeccCCCCCHHHH
Q psy16152 53 KGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLI 132 (295)
Q Consensus 53 ~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iGd~~~lp~~~~ 132 (295)
-.++.+.++++|..+.||.-|.+..-++|...-+.+|-..+++...+... ..+.| +.|-.+.=..+..
T Consensus 22 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~-----------grvpv-iaGvg~~~t~~ai 89 (300)
T 3eb2_A 22 VRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQ-----------RRVPV-VAGVASTSVADAV 89 (300)
T ss_dssp BCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHT-----------TSSCB-EEEEEESSHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhC-----------CCCcE-EEeCCCCCHHHHH
Confidence 45788999999999999999998888889999999999988776654321 12222 2232211123333
Q ss_pred HHHHHHHHhccCCCceEEEEEecC--CCHHHHHHHHHHHHHhh
Q psy16152 133 ASFKEAMHITKDNTEGFLNVAFSY--TSRDEMVETSRILIDGL 173 (295)
Q Consensus 133 ~~~~~~e~~T~~~~~~~lni~~~y--~Gr~eIv~a~r~l~~~v 173 (295)
+..+.+++. ..+..+-+.=.| -+.+++++-.+.+++.+
T Consensus 90 ~la~~a~~~---Gadavlv~~P~y~~~~~~~l~~~f~~va~a~ 129 (300)
T 3eb2_A 90 AQAKLYEKL---GADGILAILEAYFPLKDAQIESYFRAIADAV 129 (300)
T ss_dssp HHHHHHHHH---TCSEEEEEECCSSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHc---CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC
Confidence 333333332 334444444444 37899999999998863
No 76
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=24.66 E-value=1.9e+02 Score=24.44 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 55 FDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 55 ~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
.....+.+..+.+.|++.|.|=++|+.++.-|++++..+|
T Consensus 126 ~~~y~~~L~~A~~~~i~SIAfP~IstG~~G~p~~~aa~i~ 165 (211)
T 1vhu_A 126 YKAFLGPLEKAEEMGVESIAFPAVSAGIYGCDLEKVVETF 165 (211)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCTTSSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHH
Confidence 4455666777778899999999999999999999998765
No 77
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=24.29 E-value=2.3e+02 Score=23.59 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=38.9
Q ss_pred hHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEe
Q psy16152 50 GHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRII 121 (295)
Q Consensus 50 Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~i 121 (295)
......+.+.+.++.|.++|++.|.+..-....-..+.++ -.+.+.+.+.++.. ...+.||++-+-
T Consensus 77 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~---~~~~~~~~l~~l~~---~a~~~gv~l~lE 142 (275)
T 3qc0_A 77 GREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDA---ARRMVVEGIAAVLP---HARAAGVPLAIE 142 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHH---HHHHHHHHHHHHHH---HHHHHTCCEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHH---HHHHHHHHHHHHHH---HHHHcCCEEEEe
Confidence 3456788999999999999999999864111000122222 22333444444432 344568877665
No 78
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=24.01 E-value=95 Score=27.38 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=35.0
Q ss_pred hhHHhcCCchh------H----hHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHH
Q psy16152 38 RYAKRSNAKTI------E----GHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLA 97 (295)
Q Consensus 38 R~A~~~g~~~~------~----Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~ 97 (295)
++|++.|++.. . +.+...+.+.++++...+.|+..|++-+-.+- -.+.++..+++.+
T Consensus 127 ~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~G~---~~P~~~~~lv~~l 193 (295)
T 1ydn_A 127 GAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGR---GTPDTVAAMLDAV 193 (295)
T ss_dssp HHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETTSC---CCHHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCCCC---cCHHHHHHHHHHH
Confidence 56677776543 1 12344677777777777888888887763332 3566666555444
No 79
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=23.72 E-value=3.5e+02 Score=23.18 Aligned_cols=66 Identities=14% Similarity=0.048 Sum_probs=38.7
Q ss_pred HHhhHHHHHHHHHHHHhcCCCeEEEEeecC-CCC--CC-CHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEec
Q psy16152 51 HSKGFDKLAETLQWCLDLGVREVTVYAFSI-ENF--KR-TEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIG 122 (295)
Q Consensus 51 h~~g~~~l~~ii~wc~~~GI~~lTvY~fS~-eN~--~R-~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iG 122 (295)
.....+.+.+.++.|.++|++.|.+..++. ..+ .. +.++ -++.+.+.+.+++. ...+.||++-+-.
T Consensus 102 r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~---~~~~~~~~l~~l~~---~a~~~gv~l~lEn 171 (309)
T 2hk0_A 102 RAAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAG---DYARGVEGINGIAD---FANDLGINLCIEV 171 (309)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHH---HHHHHHHHHHHHHH---HHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHH---HHHHHHHHHHHHHH---HHHHcCCEEEEee
Confidence 456778999999999999999998543221 111 11 2222 22333444444432 3456788876643
No 80
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=23.24 E-value=1.3e+02 Score=26.52 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=38.8
Q ss_pred hhHHhcCCchh------H----hHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHH
Q psy16152 38 RYAKRSNAKTI------E----GHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARA 99 (295)
Q Consensus 38 R~A~~~g~~~~------~----Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~ 99 (295)
+||++.|+... . +.+...+.+.++++-..++|+..|++-+-.+- -.+.++..+++.+.+
T Consensus 128 ~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~---~~P~~~~~lv~~l~~ 196 (298)
T 2cw6_A 128 KAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGV---GTPGIMKDMLSAVMQ 196 (298)
T ss_dssp HHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEEETTSC---CCHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCC---cCHHHHHHHHHHHHH
Confidence 57777776542 1 11234677888888888888888888874442 357777777666544
No 81
>2i79_A Acetyltransferase, GNAT family; acetyl coenzyme *A, structur genomics, PSI-2, protein structure initiative; HET: ACO; 2.10A {Streptococcus pneumoniae}
Probab=23.18 E-value=90 Score=23.86 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=27.4
Q ss_pred hHhHHhhHHHHHHHHHHHHhcC-CCeEEEEeecC
Q psy16152 48 IEGHSKGFDKLAETLQWCLDLG-VREVTVYAFSI 80 (295)
Q Consensus 48 ~~Gh~~g~~~l~~ii~wc~~~G-I~~lTvY~fS~ 80 (295)
..|.-.|-+-+..+++|+.+.| ++.|.+..++.
T Consensus 98 ~~g~Gig~~ll~~~~~~a~~~~~~~~i~l~v~~~ 131 (172)
T 2i79_A 98 YWNNGLGSLLLEEAIEWAQASGILRRLQLTVQTR 131 (172)
T ss_dssp GTTSSHHHHHHHHHHHHHHHTSSCCEEEEEEETT
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCeEEEEEEEECC
Confidence 3455567888999999999998 99999998774
No 82
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=23.08 E-value=2.4e+02 Score=23.43 Aligned_cols=64 Identities=16% Similarity=0.325 Sum_probs=39.4
Q ss_pred HHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhCCcEEEEec
Q psy16152 51 HSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIG 122 (295)
Q Consensus 51 h~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~~~~i~ir~iG 122 (295)
.+.+.+.+.+.++.|.++|++.|.+..... ...+.++ -++.+.+.+.+++. ...+.||++-+-.
T Consensus 79 ~~~~~~~~~~~i~~A~~lG~~~v~~~~~p~--~~~~~~~---~~~~~~~~l~~l~~---~a~~~Gv~l~lE~ 142 (281)
T 3u0h_A 79 FLRELSLLPDRARLCARLGARSVTAFLWPS--MDEEPVR---YISQLARRIRQVAV---ELLPLGMRVGLEY 142 (281)
T ss_dssp HHHHHHTHHHHHHHHHHTTCCEEEEECCSE--ESSCHHH---HHHHHHHHHHHHHH---HHGGGTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeecCC--CCCcchh---hHHHHHHHHHHHHH---HHHHcCCEEEEEe
Confidence 456778899999999999999998654322 1123322 22333444544432 3457788876653
No 83
>3eo4_A Uncharacterized protein MJ1062; APC60792.2,MJ_1062,methanocaldococcus jannaschii DSM 2661, S genomics, PSI-2; HET: MES PG6; 2.19A {Methanocaldococcus jannaschii}
Probab=23.08 E-value=82 Score=23.67 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=26.6
Q ss_pred HhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 49 EGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 49 ~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
.|.-.|..-+..++.|+.+.|++.|.+...+.
T Consensus 103 rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~~ 134 (164)
T 3eo4_A 103 WGKHIGRHSVSLVLKWLKNIGYKKAHARILEN 134 (164)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred cCccHHHHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 34445788899999999999999999998765
No 84
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=23.08 E-value=2.7e+02 Score=23.21 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=45.0
Q ss_pred EEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy16152 28 HIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEE 107 (295)
Q Consensus 28 HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~ 107 (295)
.|+|||.+.. ......+...-+.++||+ |+...--..|.++++..+.+-.++
T Consensus 9 ~V~IimgS~S----------------D~~v~~~a~~~L~~~gi~----~ev~V~SaHR~p~~~~~~~~~a~~-------- 60 (174)
T 3lp6_A 9 RVGVIMGSDS----------------DWPVMADAAAALAEFDIP----AEVRVVSAHRTPEAMFSYARGAAA-------- 60 (174)
T ss_dssp SEEEEESCGG----------------GHHHHHHHHHHHHHTTCC----EEEEECCTTTCHHHHHHHHHHHHH--------
T ss_pred eEEEEECcHH----------------hHHHHHHHHHHHHHcCCC----EEEEEECCCCCHHHHHHHHHHHHh--------
Confidence 5999998874 346677777788899999 444443467888877654322211
Q ss_pred HhhhhhCCcEEEEeccCCCCCHHH
Q psy16152 108 KDKLNEKGIRIRIIGNIELLPSDL 131 (295)
Q Consensus 108 ~~~~~~~~i~ir~iGd~~~lp~~~ 131 (295)
....+=|-+-|--.-||.-+
T Consensus 61 ----~g~~ViIa~AG~aa~Lpgvv 80 (174)
T 3lp6_A 61 ----RGLEVIIAGAGGAAHLPGMV 80 (174)
T ss_dssp ----HTCCEEEEEEESSCCHHHHH
T ss_pred ----CCCCEEEEecCchhhhHHHH
Confidence 11234455566666666643
No 85
>4abl_A Poly [ADP-ribose] polymerase 14; transferase, PARP14; 1.15A {Homo sapiens} PDB: 4abk_A
Probab=23.05 E-value=3.2e+02 Score=22.53 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 56 DKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 56 ~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
....+.+..|.+.|++.|.|=++|+.++.-|++++..+|
T Consensus 104 ~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~ 142 (183)
T 4abl_A 104 SSVSSVLQECEKKNYSSICLPAIGTGNAKQHPDKVAEAI 142 (183)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEeeccccCCCCCcCHHHHHHHH
Confidence 445566778889999999999999999999999987654
No 86
>1vhs_A Similar to phosphinothricin acetyltransferase; structural genomics, unknown function; 1.80A {Bacillus subtilis} SCOP: d.108.1.1
Probab=23.04 E-value=66 Score=25.02 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=26.7
Q ss_pred HhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 49 EGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 49 ~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
.|.-.|.+-+..++.|+.+.|++.|.+..+..
T Consensus 94 rg~GiG~~ll~~~~~~a~~~g~~~i~l~v~~~ 125 (175)
T 1vhs_A 94 RGKGVGSYLLQEALRIAPNLGIRSLMAFIFGH 125 (175)
T ss_dssp CSSSHHHHHHHHHHHHGGGGTCSEEEEEEETT
T ss_pred cCCCHHHHHHHHHHHHHHhCCceEEEEEEecC
Confidence 34445788899999999999999999988764
No 87
>2dxq_A AGR_C_4057P, acetyltransferase; structural genomics, PSI-2, protein struc initiative, midwest center for structural genomics, MCSG; 1.80A {Agrobacterium tumefaciens str}
Probab=22.81 E-value=92 Score=23.35 Aligned_cols=35 Identities=9% Similarity=0.088 Sum_probs=28.0
Q ss_pred chhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 46 KTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 46 ~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
|...|.-.|-.-+..+++++.+.|+..|.+..+..
T Consensus 91 p~~rg~GiG~~Ll~~~~~~a~~~g~~~i~l~v~~~ 125 (150)
T 2dxq_A 91 EARRGRGYGRTVVRHAIETAFGANCYKVMLLTGRH 125 (150)
T ss_dssp GGGTTSSHHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence 44455556888899999999999999999988654
No 88
>1tiq_A Protease synthase and sporulation negative regulatory protein PAI 1; alpha-beta protein, structural genomics, PSI; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.108.1.1
Probab=22.67 E-value=84 Score=24.49 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=26.4
Q ss_pred HhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 49 EGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 49 ~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
.|.-.|-.-+..+++||.+.|++.|.+..++.
T Consensus 103 rg~GiG~~Ll~~~~~~a~~~g~~~i~L~v~~~ 134 (180)
T 1tiq_A 103 QKHGLGKHLLNKAIEIALERNKKNIWLGVWEK 134 (180)
T ss_dssp CSSSHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred hCCCHHHHHHHHHHHHHHHCCCCEEEEEehhc
Confidence 45555778888999999999999999988764
No 89
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=22.64 E-value=1.3e+02 Score=26.86 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHH
Q psy16152 55 FDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMD 95 (295)
Q Consensus 55 ~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~ 95 (295)
.+++..++..|.+.|++.|-+=||+...|.=|++||..++.
T Consensus 197 ~~rir~vL~iA~~~g~~~LVLGA~GCGvfgnpp~~VA~~~~ 237 (277)
T 3sig_A 197 RGRAAKVLAAARHHGHRRLVLGAWGCGVFGNDPAQVAETFA 237 (277)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCTTSSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCcCCCCHHHHHHHHH
Confidence 67788999999999999999999999999999999998763
No 90
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=22.55 E-value=2.1e+02 Score=25.67 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.8
Q ss_pred HHhhHHHHHHHHHHHHhcCCCeEEE
Q psy16152 51 HSKGFDKLAETLQWCLDLGVREVTV 75 (295)
Q Consensus 51 h~~g~~~l~~ii~wc~~~GI~~lTv 75 (295)
.....+.+.++++.+.++|++.|++
T Consensus 90 r~~~i~~~~~~i~~a~~lG~~~v~~ 114 (367)
T 1tz9_A 90 RDHYIDNYRQTLRNLGKCGISLVCY 114 (367)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3466888999999999999999976
No 91
>2xd7_A Core histone macro-H2A.2; chromosomal protein, nucleosome core, chromatin regulator, nucleus, DNA-binding protein, phosphoprotein; 2.09A {Homo sapiens}
Probab=22.48 E-value=2.4e+02 Score=23.33 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 55 FDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 55 ~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
.....+.+..+.+.|++.|.|=++|+.++.-|++++..+|
T Consensus 115 ~~~y~~~L~~a~~~~~~SIAfP~IstG~~g~p~~~aa~i~ 154 (193)
T 2xd7_A 115 EETIKNCLSAAEDKKLKSVAFPPFPSGRNCFPKQTAAQVT 154 (193)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHH
Confidence 3445566667778899999999999999999999987754
No 92
>2r1i_A GCN5-related N-acetyltransferase; YP_831484.1, putative acetyltransferase, arthrobacter SP. FB acetyltransferase (GNAT) family; HET: MSE; 1.65A {Arthrobacter SP}
Probab=22.46 E-value=1.4e+02 Score=22.26 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=27.7
Q ss_pred hhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 47 TIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 47 ~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
...|...|..-+..+++++.+.|++.|.+...+.
T Consensus 108 ~~rg~Gig~~ll~~~~~~a~~~g~~~i~~~~~~~ 141 (172)
T 2r1i_A 108 GRRGHRLGSALLAASCGLVRSRGGALLEINVDGE 141 (172)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred ccccCCHHHHHHHHHHHHHHHCCCCEEEEEEcCC
Confidence 3445556788899999999999999999988654
No 93
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=21.78 E-value=2.9e+02 Score=22.86 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=32.9
Q ss_pred EEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHH
Q psy16152 28 HIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLM 94 (295)
Q Consensus 28 HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~ 94 (295)
.|+|||.+.. ......+...-+.++||++ +...--..|.++++..+.
T Consensus 8 ~V~IimgS~S----------------D~~v~~~a~~~l~~~gi~~----ev~V~SaHR~p~~~~~~~ 54 (169)
T 3trh_A 8 FVAILMGSDS----------------DLSTMETAFTELKSLGIPF----EAHILSAHRTPKETVEFV 54 (169)
T ss_dssp EEEEEESCGG----------------GHHHHHHHHHHHHHTTCCE----EEEECCTTTSHHHHHHHH
T ss_pred cEEEEECcHH----------------hHHHHHHHHHHHHHcCCCE----EEEEEcccCCHHHHHHHH
Confidence 6999998874 3466777778888999994 433333568888766543
No 94
>4e0a_A BH1408 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG, transferase; 1.80A {Bacillus halodurans} PDB: 4f6a_A*
Probab=21.77 E-value=96 Score=22.80 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=26.3
Q ss_pred HhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 49 EGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 49 ~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
.|...|..-+..++.|+.+.|++.+.+.....
T Consensus 101 rg~Gig~~ll~~~~~~~~~~g~~~i~l~~~~~ 132 (164)
T 4e0a_A 101 RGGGIGRLIFEAIISYGKAHQVDAIELDVYDF 132 (164)
T ss_dssp CSSSHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred hcCChHHHHHHHHHHHHHHcCCCEEEEEEEcC
Confidence 34445788899999999999999999988654
No 95
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=21.43 E-value=31 Score=26.94 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHhhhhCCCCCCCCCHH
Q psy16152 157 TSRDEMVETSRILIDGLRTNKITNEDVTMD 186 (295)
Q Consensus 157 ~Gr~eIv~a~r~l~~~v~~~~l~~~dI~~~ 186 (295)
..-.|+.+-+|.|.+++..|++++|+++..
T Consensus 37 ~~spev~~~Vr~LVq~Ll~~~i~~EeFt~~ 66 (114)
T 2p6v_A 37 XQSTETAANVXELVQNLLDGXIEAEDFTSR 66 (114)
T ss_dssp SSCHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 355678889999999888777655555443
No 96
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=21.42 E-value=2.1e+02 Score=23.92 Aligned_cols=73 Identities=22% Similarity=0.401 Sum_probs=45.4
Q ss_pred CCCCEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHH
Q psy16152 24 HVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKR 103 (295)
Q Consensus 24 ~iP~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~ 103 (295)
+-| -|+|||.+.. ....+.+...-+.++||+ |+...---.|.++++..+.+.
T Consensus 11 ~~P-~V~IimGS~S----------------D~~v~~~a~~~l~~~gi~----~ev~V~saHR~p~~l~~~~~~------- 62 (173)
T 4grd_A 11 SAP-LVGVLMGSSS----------------DWDVMKHAVAILQEFGVP----YEAKVVSAHRMPDEMFDYAEK------- 62 (173)
T ss_dssp SSC-SEEEEESSGG----------------GHHHHHHHHHHHHHTTCC----EEEEECCTTTSHHHHHHHHHH-------
T ss_pred CCC-eEEEEeCcHh----------------HHHHHHHHHHHHHHcCCC----EEEEEEccccCHHHHHHHHHH-------
Confidence 345 4999998875 346677777888899999 444333456888866543321
Q ss_pred HHHHHhhhhhCCcE--EEEeccCCCCCHHH
Q psy16152 104 LIEEKDKLNEKGIR--IRIIGNIELLPSDL 131 (295)
Q Consensus 104 ~~~~~~~~~~~~i~--ir~iGd~~~lp~~~ 131 (295)
...+|++ |-.-|--.-||.-+
T Consensus 63 -------a~~~g~~ViIa~AG~aahLpgvv 85 (173)
T 4grd_A 63 -------ARERGLRAIIAGAGGAAHLPGML 85 (173)
T ss_dssp -------HTTTTCSEEEEEEESSCCHHHHH
T ss_pred -------HHhcCCeEEEEeccccccchhhh
Confidence 2234444 45556666676644
No 97
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=21.33 E-value=2.4e+02 Score=23.47 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=32.8
Q ss_pred EEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHH
Q psy16152 28 HIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGL 93 (295)
Q Consensus 28 HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L 93 (295)
.|+|||.+.. ......+...-+.++||+ |+...--..|.++++..+
T Consensus 13 ~V~IimGS~S----------------D~~v~~~a~~~L~~~Gi~----~dv~V~SaHR~p~~l~~~ 58 (170)
T 1xmp_A 13 LVGVIMGSTS----------------DWETMKYACDILDELNIP----YEKKVVSAHRTPDYMFEY 58 (170)
T ss_dssp SEEEEESSGG----------------GHHHHHHHHHHHHHTTCC----EEEEECCTTTSHHHHHHH
T ss_pred cEEEEECcHH----------------HHHHHHHHHHHHHHcCCC----EEEEEEeccCCHHHHHHH
Confidence 4999998875 346677777778899999 454443457888876543
No 98
>3g8w_A Lactococcal prophage PS3 protein 05; APC61042, acetyltransferase, staphylococcus epidermidis ATCC structural genomics; HET: NHE FLC; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=21.32 E-value=1.3e+02 Score=22.41 Aligned_cols=32 Identities=6% Similarity=0.099 Sum_probs=27.3
Q ss_pred HhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 49 EGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 49 ~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
.|.-.|-.-+..++.|+.+.|++.|.+...+.
T Consensus 94 rg~Gig~~ll~~~~~~a~~~g~~~i~l~v~~~ 125 (169)
T 3g8w_A 94 NDEIVNRELINHIIQYAKEQNIETLMIAIASN 125 (169)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred CCCcHHHHHHHHHHHHHHHCCCCEEEEEEecC
Confidence 55556788899999999999999999888765
No 99
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=21.26 E-value=2.4e+02 Score=23.27 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=44.7
Q ss_pred EEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy16152 28 HIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEE 107 (295)
Q Consensus 28 HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~ 107 (295)
.|+|||.+.. ......+...-+.++||+ |+...--..|.++++..+.+-
T Consensus 5 ~V~Iimgs~S----------------D~~v~~~a~~~l~~~gi~----~ev~V~SaHR~p~~~~~~~~~----------- 53 (163)
T 3ors_A 5 KVAVIMGSSS----------------DWKIMQESCNMLDYFEIP----YEKQVVSAHRTPKMMVQFASE----------- 53 (163)
T ss_dssp CEEEEESCGG----------------GHHHHHHHHHHHHHTTCC----EEEEECCTTTSHHHHHHHHHH-----------
T ss_pred eEEEEECcHH----------------HHHHHHHHHHHHHHcCCC----EEEEEECCcCCHHHHHHHHHH-----------
Confidence 4999998874 346677777888999999 454444467888876654321
Q ss_pred HhhhhhCCcE--EEEeccCCCCCHHH
Q psy16152 108 KDKLNEKGIR--IRIIGNIELLPSDL 131 (295)
Q Consensus 108 ~~~~~~~~i~--ir~iGd~~~lp~~~ 131 (295)
..+.+++ |-+-|--.-||.-+
T Consensus 54 ---a~~~g~~ViIa~AG~aa~Lpgvv 76 (163)
T 3ors_A 54 ---ARERGINIIIAGAGGAAHLPGMV 76 (163)
T ss_dssp ---TTTTTCCEEEEEEESSCCHHHHH
T ss_pred ---HHhCCCcEEEEECCchhhhHHHH
Confidence 2334444 55555556676644
No 100
>1wur_A GTP cyclohydrolase I; beta barrel, protein-inhibitor complex, pteridine tetrahydrobiopterin, structural genomics, NPPSFA; HET: 8DG; 1.82A {Thermus thermophilus} SCOP: d.96.1.1 PDB: 1wm9_A* 1wuq_A*
Probab=21.13 E-value=39 Score=29.47 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=21.9
Q ss_pred CEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhc
Q psy16152 27 KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDL 68 (295)
Q Consensus 27 ~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~ 68 (295)
-|||.|+||. -.|..++..+++|...-
T Consensus 119 ahVaYiP~~k---------------VvGLSKlaRiV~~farR 145 (220)
T 1wur_A 119 VHIGYIPDGK---------------ILGLSKFARIVDMFARR 145 (220)
T ss_dssp EEEEEECSSE---------------EECHHHHHHHHHHHHSS
T ss_pred EEEEEeCCCe---------------eecHHHHHHHHHHHHcC
Confidence 5999999764 36899999999996543
No 101
>1on0_A YYCN protein; structural genomics, alpha-beta protein with anti-parallel B strands, PSI, protein structure initiative; 2.20A {Bacillus subtilis} SCOP: d.108.1.1
Probab=21.05 E-value=64 Score=24.59 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=26.7
Q ss_pred hHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 48 IEGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 48 ~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
..|.-.|-+-+..++.|+.+.|++.|.+..+..
T Consensus 100 ~rg~G~g~~ll~~~~~~a~~~g~~~i~l~v~~~ 132 (158)
T 1on0_A 100 YRGKGYAKQALAALDQAARSMGIRKLSLHVFAH 132 (158)
T ss_dssp GCSSSHHHHHHHHHHHHHHHHTCCEEEECCCTT
T ss_pred hcCCCHHHHHHHHHHHHHHHCCCCEEEEEEecC
Confidence 344445788899999999999999999988654
No 102
>3fix_A N-acetyltransferase; termoplasma acidophilum, structural GEN PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.30A {Thermoplasma acidophilum} PDB: 3f0a_A* 3k9u_A* 3ne7_A*
Probab=20.86 E-value=1.2e+02 Score=23.33 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=27.9
Q ss_pred hhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecC
Q psy16152 47 TIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80 (295)
Q Consensus 47 ~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~ 80 (295)
...|...|-.-+..++.|+.+.|++.|.+.....
T Consensus 121 ~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~ 154 (183)
T 3fix_A 121 EYTHKKIGKTLLLEAEKIMKKKGILECRLYVHRQ 154 (183)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCceEEEEEecC
Confidence 3445556888899999999999999999988664
No 103
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=20.40 E-value=2.6e+02 Score=22.84 Aligned_cols=68 Identities=21% Similarity=0.323 Sum_probs=43.1
Q ss_pred EEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhcCCCeEEEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy16152 29 IAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEK 108 (295)
Q Consensus 29 IavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~GI~~lTvY~fS~eN~~R~~~Ev~~L~~l~~~~l~~~~~~~ 108 (295)
|+|||.+.. ......+...-+.++||+ |+...--..|.++++..+.+-
T Consensus 2 V~Iimgs~S----------------D~~v~~~a~~~l~~~gi~----~dv~V~saHR~p~~~~~~~~~------------ 49 (157)
T 2ywx_A 2 ICIIMGSES----------------DLKIAEKAVNILKEFGVE----FEVRVASAHRTPELVEEIVKN------------ 49 (157)
T ss_dssp EEEEESSGG----------------GHHHHHHHHHHHHHTTCC----EEEEECCTTTCHHHHHHHHHH------------
T ss_pred EEEEEccHH----------------HHHHHHHHHHHHHHcCCC----eEEEEEcccCCHHHHHHHHHh------------
Confidence 789998874 346667777778899999 554443467888866543211
Q ss_pred hhhhhCCcEEEEeccCCCCCHHH
Q psy16152 109 DKLNEKGIRIRIIGNIELLPSDL 131 (295)
Q Consensus 109 ~~~~~~~i~ir~iGd~~~lp~~~ 131 (295)
... .+=|-+-|--.-||.-+
T Consensus 50 --a~~-~ViIa~AG~aa~Lpgvv 69 (157)
T 2ywx_A 50 --SKA-DVFIAIAGLAAHLPGVV 69 (157)
T ss_dssp --CCC-SEEEEEEESSCCHHHHH
T ss_pred --cCC-CEEEEEcCchhhhHHHH
Confidence 111 55566677666666643
No 104
>1is8_A GTP cyclohydrolase I; enzyme-regulatory protein complex, hydrolase/protein binding complex; HET: PHE; 2.70A {Rattus norvegicus} SCOP: d.96.1.1 PDB: 1is7_A* 1wpl_A* 1fb1_A
Probab=20.04 E-value=38 Score=29.71 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=21.7
Q ss_pred CEEEEEEcCChhhHHhcCCchhHhHHhhHHHHHHHHHHHHhc
Q psy16152 27 KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDL 68 (295)
Q Consensus 27 ~HIavImDGnrR~A~~~g~~~~~Gh~~g~~~l~~ii~wc~~~ 68 (295)
-|||.|+||. -.|..++..+++|...-
T Consensus 132 ahVaYiP~gk---------------ViGLSKlaRiVd~farR 158 (230)
T 1is8_A 132 VHIGYLPNKQ---------------VLGLSKLARIVEIYSRR 158 (230)
T ss_dssp EEEEEECSEE---------------CCCHHHHHHHHHHHHSS
T ss_pred EEEEEcCCCe---------------eccHHHHHHHHHHHhcc
Confidence 4999999664 36899999999996543
Done!