RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16152
(295 letters)
>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate
synthase. Previously known as uncharacterized protein
family UPF0015, a single member of this family has been
identified as an undecaprenyl diphosphate synthase.
Length = 222
Score = 289 bits (743), Expect = 4e-99
Identities = 99/217 (45%), Positives = 148/217 (68%), Gaps = 3/217 (1%)
Query: 32 IMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVN 91
IMDGNRR+AK+ EGH G + + E L+WCL+LG++ +T+YAFS EN+KR +EEV+
Sbjct: 1 IMDGNRRWAKKRGLPRTEGHRAGAEAVREILEWCLELGIKYLTLYAFSTENWKRPKEEVD 60
Query: 92 GLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLN 151
LM+L K +RL+E L++ G+R+R+IG++ LLP DL + ++A TK+NT LN
Sbjct: 61 FLMELLERKLRRLLE---DLHKNGVRVRVIGDLSLLPEDLRKAIEDAEEATKNNTGLTLN 117
Query: 152 VAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETR 211
+A +Y RDE+V+ + L + K++ ED+ ++ +K LYT P+PDL+IRTSGE R
Sbjct: 118 IALNYGGRDEIVDAVKRLARDVADGKLSPEDIDEEVIEKYLYTSDLPDPDLLIRTSGEKR 177
Query: 212 LSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
LS+F+L QS + LYF LWP+FT +L+ A+ +Q
Sbjct: 178 LSNFLLWQSAYAELYFTDTLWPDFTKEDLLRAIRDYQ 214
>gnl|CDD|238265 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases
(cis-IPPS); homodimers which catalyze the successive
1'-4 condensation of the isopentenyl diphosphate (IPP)
molecule to trans,trans-farnesyl diphosphate (FPP) or to
cis,trans-FPP to form long-chain polyprenyl
diphosphates. A few can also catalyze the condensation
of IPP to trans-geranyl diphosphate to form the
short-chain cis,trans- FPP. In prokaryotes, the
cis-IPPS, undecaprenyl diphosphate synthase (UPP
synthase) catalyzes the formation of the carrier lipid
UPP in bacterial cell wall peptidooglycan biosynthesis.
Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl
diphosphate (dedol-PP) synthase catalyzes the formation
of the polyisoprenoid glycosyl carrier lipid dolichyl
monophosphate. cis-IPPS are mechanistically and
structurally distinct from trans-IPPS, lacking the DDXXD
motifs, yet requiring Mg2+ for activity.
Length = 221
Score = 286 bits (735), Expect = 6e-98
Identities = 112/223 (50%), Positives = 152/223 (68%), Gaps = 3/223 (1%)
Query: 26 PKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKR 85
PKH+AFIMDGNRR+AK+ IEGH G +KL + L+WCL+LGV+EVT+YAFS EN+KR
Sbjct: 1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKR 60
Query: 86 TEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDN 145
+EEV+ LM+L R +R +L + G+RIRIIG++ LLP L K+A TK+N
Sbjct: 61 PKEEVDFLMELFRDVLRR---ILKELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNN 117
Query: 146 TEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIR 205
T LNVAF+Y R E++ R + + ++ K+T ED+ +K LYT SP+PDL+IR
Sbjct: 118 TGFTLNVAFNYGGRQEIIHAVREIAEKVKAGKLTPEDIDESTLNKHLYTHDSPDPDLLIR 177
Query: 206 TSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
TSGE RLS+F+L QS S LYF LWP+FT W+ + A+ +Q
Sbjct: 178 TSGEQRLSNFLLWQSAYSELYFSDVLWPDFTFWDFLRALLDYQ 220
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid
metabolism].
Length = 245
Score = 265 bits (680), Expect = 3e-89
Identities = 102/227 (44%), Positives = 149/227 (65%), Gaps = 3/227 (1%)
Query: 22 KGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIE 81
+P+H+A IMDGNRR+AK+ IEGH G L E L+WCL+LG++ +T+YAFS E
Sbjct: 13 PARLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTE 72
Query: 82 NFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHI 141
N+KR +EEV+ LM+L + EE KL++ G+RIRIIG++ LP ++ + ++A
Sbjct: 73 NWKRPKEEVSFLMELFEKALR---EELKKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEK 129
Query: 142 TKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPD 201
TK+NT LN+A +Y RDE+V+ R + + + K++ ED+ +L LYT P+PD
Sbjct: 130 TKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPEDIDEELISSHLYTSGLPDPD 189
Query: 202 LIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
L+IRTSGE RLS+F+L QS S LYF LWP+F +L+ A+ +Q
Sbjct: 190 LLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRREDLLRAIRDYQ 236
>gnl|CDD|129165 TIGR00055, uppS, undecaprenyl diphosphate synthase. This enzyme
builds undecaprenyl diphosphate, a molecule that in
bacteria is used a carrier in synthesizing cell wall
components. Alternate name: undecaprenyl pyrophosphate
synthetase. Activity has been demonstrated
experimentally for members of this family from
Micrococcus luteus, E. coli, Haemophilus influenzae, and
Streptococcus pneumoniae [Cell envelope, Biosynthesis
and degradation of surface polysaccharides and
lipopolysaccharides].
Length = 226
Score = 232 bits (593), Expect = 2e-76
Identities = 93/225 (41%), Positives = 138/225 (61%), Gaps = 3/225 (1%)
Query: 27 KHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRT 86
+H+A IMDGN R+AK+ GH G L L+WC +LGV +T+YAFS EN+KR
Sbjct: 1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRP 60
Query: 87 EEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNT 146
+EEV+ LM+L K R E +L+ +RIRIIG++ LL +L K+A TK+NT
Sbjct: 61 KEEVDFLMELFEKKLDR---EVKELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNT 117
Query: 147 EGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRT 206
+ LN+AF+Y R+E++ + + + +++ K+ ED+ + +K LYT P DL+IRT
Sbjct: 118 DFTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEETLNKHLYTANLPPVDLLIRT 177
Query: 207 SGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQYDF 251
SGE R+S+F+L QS + LYF LWP+F + A+ FQ+
Sbjct: 178 SGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRH 222
>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 251
Score = 224 bits (573), Expect = 6e-73
Identities = 90/229 (39%), Positives = 135/229 (58%), Gaps = 3/229 (1%)
Query: 20 LKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFS 79
L KG++PKHIA IMDGN R+AK+ I GH G D + + + +LGV+ +T+YAFS
Sbjct: 17 LDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFS 76
Query: 80 IENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAM 139
EN+KR ++EV LM+L + + E L E +++ +IG+ + LP + + ++A+
Sbjct: 77 TENWKRPKDEVKFLMNLPVEFLDKFVPE---LIENNVKVNVIGDTDRLPEHTLRALEKAI 133
Query: 140 HITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPE 199
TK+NT LN A +Y R E+V + + + K+ ED+T +L L T P+
Sbjct: 134 EKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGKLNPEDITEELISNYLMTKGLPD 193
Query: 200 PDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
PDL+IRTSGE RLS+F+L Q S YF LWP+F L+ A+ +Q
Sbjct: 194 PDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKDYQ 242
>gnl|CDD|237831 PRK14836, PRK14836, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 253
Score = 197 bits (502), Expect = 2e-62
Identities = 86/223 (38%), Positives = 127/223 (56%), Gaps = 3/223 (1%)
Query: 15 AIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVT 74
+I + ++P+HIA IMDGN R+AKR +EGH G + T+++CL+ G+ +T
Sbjct: 4 SIQMIPANENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLT 63
Query: 75 VYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIAS 134
++AFS EN+ R +EV+ LM+L R E DKL+ GIR+R IG+ L L
Sbjct: 64 LFAFSSENWLRPADEVSALMELFLKALDR---EVDKLHRNGIRVRFIGDRSRLSPKLQER 120
Query: 135 FKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYT 194
+ A +T NT L++A SY R ++V +R L + K+ +++ L + L
Sbjct: 121 MEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAAGKLAPDEIDEALLAQHLAL 180
Query: 195 GTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTA 237
PEPDL IRTSGE R+S+F+L Q + LYF LWP+F A
Sbjct: 181 ADLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFDA 223
>gnl|CDD|184841 PRK14831, PRK14831, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 249
Score = 192 bits (489), Expect = 2e-60
Identities = 87/229 (37%), Positives = 130/229 (56%), Gaps = 3/229 (1%)
Query: 20 LKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFS 79
L +PKH+A IMDGN R+AKR I GH +G D L + L+ C D G+ +T YAFS
Sbjct: 15 LDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFS 74
Query: 80 IENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAM 139
EN+ R EEVN LM L +R +EE L E+ +RIR +G+++ LP L +
Sbjct: 75 TENWSRPLEEVNFLMTLFERVLRRELEE---LMEENVRIRFVGDLDPLPKSLQEEISRST 131
Query: 140 HITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPE 199
+TK+N NV +Y R E+V+ +R + ++ ++ ++ +LF+ LYT +
Sbjct: 132 ELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQQGELDPSEIDENLFESELYTAGIKD 191
Query: 200 PDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
PDL+IRTSGE R+S+F+L Q + +Y LWP+F A+ +Q
Sbjct: 192 PDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQ 240
>gnl|CDD|237829 PRK14834, PRK14834, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 249
Score = 188 bits (479), Expect = 6e-59
Identities = 83/223 (37%), Positives = 122/223 (54%), Gaps = 3/223 (1%)
Query: 25 VPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFK 84
VP+H+A IMDGN R+AK GH G + L ++ +LG+ +T++AFS EN+
Sbjct: 14 VPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWS 73
Query: 85 RTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKD 144
R EV+ L L R +R + E L+ G+R+R+IG L +D+ A EA +T++
Sbjct: 74 RPASEVSDLFGLLRLFIRRDLAE---LHRNGVRVRVIGERAGLEADICALLNEAEELTRN 130
Query: 145 NTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLII 204
NT L +AF+Y SRDE+ R L + ++ + + L T P+PDLII
Sbjct: 131 NTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPASIDAETISANLDTADIPDPDLII 190
Query: 205 RTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAF 247
RTSGE RLS+F+L Q+ S L F WP+F L A+ +
Sbjct: 191 RTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAALEAAIEEY 233
>gnl|CDD|237830 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 275
Score = 182 bits (464), Expect = 2e-56
Identities = 83/242 (34%), Positives = 135/242 (55%), Gaps = 5/242 (2%)
Query: 11 WFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGV 70
++ + + +K G +P+H+ I+DGNRR+A+ + GH G K E L+WCL+LG+
Sbjct: 27 GYEQRLEREVKHGKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGI 86
Query: 71 REVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSD 130
VT++ FS +NF R+ EV LM+L + +R+ + +++ +R+R IG + P
Sbjct: 87 PTVTIWVFSTDNFSRSPAEVETLMNLFEREARRMAVDP-RIHANRVRVRAIGRHDGFPPK 145
Query: 131 LIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVET-SRILIDGLRTNKITNE---DVTMD 186
++ + +E T+ + LN+A Y R+E+V+ +L++ T K E ++T +
Sbjct: 146 VLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLEAAATGKSPEEVAAELTPE 205
Query: 187 LFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFA 246
LYT P+PD IIRTSGE RLS F+L QS S YFC WP F + + A+
Sbjct: 206 HISAHLYTAGVPDPDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKVDFLRALRD 265
Query: 247 FQ 248
+Q
Sbjct: 266 YQ 267
>gnl|CDD|237825 PRK14828, PRK14828, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 256
Score = 181 bits (462), Expect = 2e-56
Identities = 85/217 (39%), Positives = 119/217 (54%), Gaps = 13/217 (5%)
Query: 25 VPKHIAFIMDGNRRYAKRSNAKTI-EGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENF 83
VP H+ I+DGNRR+A+++ + +GH G K+ E L WC + V VT+Y S +N
Sbjct: 26 VPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNL 85
Query: 84 KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITK 143
R EE+N L+D+ ++L + R+R +G+++LLP+ KEA T
Sbjct: 86 GRPSEELNPLLDIIEDVVRQLAPDGR------WRVRHVGSLDLLPAPSANRLKEAEEATV 139
Query: 144 DNTEGFLNVAFSYTSRDEMVETSRILI-----DGLRTNKITNEDVTMDLFDKCLYTGTSP 198
N +NVA Y R E+V+ R L+ G +++ E VT+D LYTG P
Sbjct: 140 GNDGIKVNVAVGYGGRQEIVDAVRSLLTEHKDKGTSIDELA-ESVTVDAISTHLYTGGQP 198
Query: 199 EPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEF 235
+PDL+IRTSGE RLS FML QS S YFC WP F
Sbjct: 199 DPDLVIRTSGEQRLSGFMLWQSAHSEYYFCETYWPAF 235
>gnl|CDD|237827 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 253
Score = 172 bits (438), Expect = 9e-53
Identities = 91/242 (37%), Positives = 138/242 (57%), Gaps = 6/242 (2%)
Query: 9 LNWFQYAIIKL-LKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLD 67
+N F Y + L +P+HIA IMDGN R+A I GH +G L E L+ C D
Sbjct: 1 MNNFDYVMRPPDLDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKD 60
Query: 68 LGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLI-EEKDKLNEKGIRIRIIGNIEL 126
G++ +T YAFS EN++R EEV+ LM L F+RL+ E +++ +G+RI IG++
Sbjct: 61 WGIKALTAYAFSTENWQRPIEEVDFLMLL----FERLLRRELAQMHREGVRISFIGDLSA 116
Query: 127 LPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMD 186
LP L + +M T +N VA +Y SR+E+ R + + ++ K++ + V
Sbjct: 117 LPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLSADAVNEQ 176
Query: 187 LFDKCLYTGTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFA 246
L ++ LYT +P PDL+IRTSGE RLS+F+L Q + +YF LWP+F A+ +
Sbjct: 177 LVEQHLYTADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQALLS 236
Query: 247 FQ 248
+Q
Sbjct: 237 YQ 238
>gnl|CDD|237826 PRK14829, PRK14829, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 243
Score = 166 bits (422), Expect = 2e-50
Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 3/226 (1%)
Query: 22 KGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIE 81
K +P+HIA +MDGN R+A + K EGH G L + + ++ GV +++Y FS E
Sbjct: 11 KNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTE 70
Query: 82 NFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHI 141
N+KR+ +EV LM +R R +++++E G+R+R G L +I + A +
Sbjct: 71 NWKRSPDEVRFLMGFSRDVIHR---RREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEEL 127
Query: 142 TKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPD 201
TK+NT L +Y R E+ + + + +R KI+ + VT + LY P+ D
Sbjct: 128 TKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDGKISGDRVTEKMISDHLYNPDMPDVD 187
Query: 202 LIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAF 247
L +RTSGE R S+F+L QS + L F KL+P+F +L A+ +
Sbjct: 188 LFLRTSGEQRTSNFLLWQSAYAELDFVPKLFPDFGRDDLWAAIDEY 233
>gnl|CDD|173302 PRK14841, PRK14841, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 233
Score = 164 bits (416), Expect = 1e-49
Identities = 93/225 (41%), Positives = 143/225 (63%), Gaps = 9/225 (4%)
Query: 25 VPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFK 84
+P+H+A IMDGN R+AK+ I+GH +G + L T++W L+LG++ +T ++FS EN+K
Sbjct: 3 IPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWK 62
Query: 85 RTEEEVNGLMDLARAKFKRLIE-EKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITK 143
R +EEV LMDL F ++I+ E + L + +R+RI+G E LP ++ ++E TK
Sbjct: 63 RPKEEVEFLMDL----FVQMIDREMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTK 118
Query: 144 DNTEGFLNVAFSYTSRDEMVET-SRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDL 202
+ L +AF+Y R E+++ IL D + KI ++T + F + LY P+PDL
Sbjct: 119 EFDRMTLVIAFNYGGRREILDAVESILKDVSQGKKI---ELTEETFRQYLYLPDVPDPDL 175
Query: 203 IIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAF 247
IIRTSGE RLS+F+L QS S LYF KLWP+FT + + A+ ++
Sbjct: 176 IIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESY 220
>gnl|CDD|184846 PRK14838, PRK14838, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 242
Score = 160 bits (406), Expect = 4e-48
Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 5/232 (2%)
Query: 17 IKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVY 76
+ + +P+HIA IMDGN R+AK + GH G + + + LGV+ +T+Y
Sbjct: 2 KEQIDMNRIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLY 61
Query: 77 AFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFK 136
FS EN+ R +EV LM L E++ + IR RIIG+I LP ++
Sbjct: 62 TFSTENWNRPSDEVAALMSLLLDSI-----EEETFMKNNIRFRIIGDIAKLPEEVQERLN 116
Query: 137 EAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGT 196
E T NT L +A SY+SR E+ E +R + ++ ++ E++T + + L T
Sbjct: 117 ECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLVQNGELNPEEITEESISEHLTTNF 176
Query: 197 SPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
P+PDL+IRT GE RLS+++L Q S LYFC WP+F L A++ +Q
Sbjct: 177 MPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCKAIYDYQ 228
>gnl|CDD|173301 PRK14840, PRK14840, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 250
Score = 158 bits (400), Expect = 4e-47
Identities = 82/228 (35%), Positives = 131/228 (57%), Gaps = 7/228 (3%)
Query: 25 VPKHIAFIMDGNRRYAKRSNA----KTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSI 80
+P+H+A IMDGNRR+ ++ + I GH G L + + L LG+ +T++AFS
Sbjct: 18 LPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFST 77
Query: 81 ENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMH 140
ENF R++EEV L L ++ L + L+E IR+R IG++ LP +L + ++A
Sbjct: 78 ENFSRSKEEVAELFSLFNSQ---LDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASS 134
Query: 141 ITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEP 200
T + L +A +Y +DE+V + L L KI+++D++ +L L T P+P
Sbjct: 135 ATAHYSRMELVLAINYGGKDELVRAFKKLHQDLANKKISSDDISEELISSYLDTSGLPDP 194
Query: 201 DLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
DL+IRT GE R+S+F+L Q + LY LWP+FT +L+ A+ +Q
Sbjct: 195 DLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTPNDLLEAIKTYQ 242
>gnl|CDD|237832 PRK14839, PRK14839, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 239
Score = 148 bits (375), Expect = 2e-43
Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 12/221 (5%)
Query: 28 HIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTE 87
H+A IMDGN R+A + GH G + + ++ DLG+ +T+YAFS +N++R
Sbjct: 12 HVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPA 71
Query: 88 EEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTE 147
EV GLM L RA L E ++L G+R+ +IG + LP + + A T
Sbjct: 72 AEVGGLMRLLRA---YLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDR 128
Query: 148 GFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTS 207
L +A Y++RD ++ + + E ++ + F L TG + DL+IRT
Sbjct: 129 LHLRIAVDYSARDAILAAAAKALGP--------EGLSREAFSDLL-TGDGGDVDLLIRTG 179
Query: 208 GETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
GE RLSDF+L +S + L+F ++WP+F A +L AV F
Sbjct: 180 GEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFH 220
>gnl|CDD|237828 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 233
Score = 144 bits (366), Expect = 3e-42
Identities = 83/223 (37%), Positives = 122/223 (54%), Gaps = 6/223 (2%)
Query: 26 PKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKR 85
KH+A IMDGN R+AK GH KG L E WC + + +T+YAFS EN+KR
Sbjct: 5 LKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKR 64
Query: 86 TEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDN 145
+ EV+ LM L + K L +E+ E IR + IG++E +L + + T+ +
Sbjct: 65 PKSEVDFLMKLLK---KYLKDERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTR-S 120
Query: 146 TEGFLNV-AFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLII 204
+GF V A +Y S+DE+ + L++ ++ I + + CL T PE DL+I
Sbjct: 121 FKGFTQVLALNYGSKDEISRAFKKLLESPPSH-IGELESLEEEISNCLDTADLPEVDLLI 179
Query: 205 RTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAF 247
RT GE RLS+F+L QS + L+F LWP+FT +L N + F
Sbjct: 180 RTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDF 222
>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 296
Score = 138 bits (349), Expect = 4e-39
Identities = 72/211 (34%), Positives = 112/211 (53%), Gaps = 3/211 (1%)
Query: 25 VPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFK 84
+P H+A +MDGN R+A + EGH G + + ++LG++ +++YAFS EN+K
Sbjct: 67 LPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWK 126
Query: 85 RTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKD 144
R+ EEV LM R +R +D LN+ G+RIR +G+ L +I A +TK
Sbjct: 127 RSPEEVRFLMGFNRDVVRR---RRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKS 183
Query: 145 NTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLII 204
N +N +Y R E+ E +R + ++ E +T + L P+ DL +
Sbjct: 184 NDVITINYCVNYGGRTEITEATREIAREAAAGRLNPERITESTIARHLQRPDIPDVDLFL 243
Query: 205 RTSGETRLSDFMLVQSKSSFLYFCHKLWPEF 235
RTSGE R S+FML Q+ + F KLWP++
Sbjct: 244 RTSGEQRSSNFMLWQAAYAEYIFQDKLWPDY 274
>gnl|CDD|173303 PRK14842, PRK14842, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 241
Score = 135 bits (341), Expect = 1e-38
Identities = 80/234 (34%), Positives = 129/234 (55%), Gaps = 12/234 (5%)
Query: 20 LKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFS 79
L + +P HIA IMDGN R+A+ K EGH +G + + + L+ G++ +++YAFS
Sbjct: 3 LFESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFS 62
Query: 80 IENFKRTEEEVNGLMDLARAKFKRLIE----EKDKLNEKGIRIRIIGNIELLPSDLIASF 135
EN+KR E+ R+ F L+E D ++ +GIRI G+ + L ++
Sbjct: 63 TENWKRPITEI-------RSIFGLLVEFIETRLDTIHARGIRIHHSGSRKKLTRTVLDKI 115
Query: 136 KEAMHITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNED-VTMDLFDKCLYT 194
AM TK N +N +Y S DE++ ++ + + K+T E + F+K LYT
Sbjct: 116 DFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLARKAKKVTLEKPLKEKEFEKFLYT 175
Query: 195 GTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
P DL+IRT+GE RLS+F+L QS + LYF LWP+F +L++++ ++
Sbjct: 176 SPLPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVDSLKWYE 229
>gnl|CDD|173298 PRK14837, PRK14837, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 230
Score = 118 bits (297), Expect = 4e-32
Identities = 74/221 (33%), Positives = 119/221 (53%), Gaps = 17/221 (7%)
Query: 20 LKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFS 79
+ K +P H+ IMDGNRR+A + EGH +G + E ++ L LG++ +++Y FS
Sbjct: 1 MNKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFS 60
Query: 80 IENFKRTEEEVNGLM----DLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASF 135
EN+ RT+ E+ LM D ++F + + I+I + G+IE L ++ S
Sbjct: 61 TENWNRTDSEIEHLMFLIADYLSSEF-------NFYKKNNIKIIVSGDIESLSEEVKKSI 113
Query: 136 KEAMHITKDNTEGFLNVAFSYTSRDEMVE-TSRILIDGLRTNKITNEDVTMDLFDKCLYT 194
K+A+ TK+ LN+A +Y R+E+V + L GL + NE+V F K L
Sbjct: 114 KDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLSSGLDLETL-NENV----FSKFLDN 168
Query: 195 GTSPEPDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEF 235
P+ DL+IRT G+ R+S+F+L + F + LWPE+
Sbjct: 169 PELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEY 209
>gnl|CDD|182326 PRK10240, PRK10240, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 229
Score = 115 bits (288), Expect = 7e-31
Identities = 67/216 (31%), Positives = 115/216 (53%), Gaps = 5/216 (2%)
Query: 33 MDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNG 92
MDGN R+AK+ GH G + + + + G+ +T+YAFS EN+ R +EV+
Sbjct: 1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSA 60
Query: 93 LMDLARAKFKRLIEEKDK-LNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLN 151
LM+L F ++ + K L+ +R+RIIG+ S L +++ +T NT LN
Sbjct: 61 LMEL----FVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLN 116
Query: 152 VAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLIIRTSGETR 211
+A +Y R ++V+ R L + ++ + + + ++ ++ + DL+IRT GE R
Sbjct: 117 IAANYGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHICMHELAPVDLVIRTGGEHR 176
Query: 212 LSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAF 247
+S+F+L Q + LYF LWP+F + A+ AF
Sbjct: 177 ISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAF 212
>gnl|CDD|185571 PTZ00349, PTZ00349, dehydrodolichyl diphosphate synthetase;
Provisional.
Length = 322
Score = 108 bits (270), Expect = 2e-27
Identities = 92/319 (28%), Positives = 142/319 (44%), Gaps = 79/319 (24%)
Query: 9 LNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDL 68
LN + I LL+ KHI+ IMDGNRR+AK + GH G L + ++ C+ L
Sbjct: 3 LNIIERFITSLLRDFINIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKL 62
Query: 69 GVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLN---EKGIRIRIIGNIE 125
++ ++V++FS+ N+ R+ EE++ L L LI E + I+I+IIGN+
Sbjct: 63 KIKILSVFSFSLLNYNRSPEEIHFLFYL---NLLILINEDFFFKFIKDNKIKIKIIGNL- 118
Query: 126 LLPSDLIASFKEAMHITKDNTEGF----LNVAFSYTSRDEM------------------- 162
S + ++++ +H ++ TE F LN+ FSYTSR+EM
Sbjct: 119 ---SYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSLCKFNPNLYFDTYKNLLE 175
Query: 163 ----VETSRILIDGLRTNKIT----------------NEDVTMDL-FD-KCLYTGTS--- 197
+ S IL D ++ NE + +DL FD C+ S
Sbjct: 176 EKKILCGSNILTDPIKEGTFAIPDDEDECDYLDHELENERIDLDLKFDGDCICGEKSFLN 235
Query: 198 ------------------PEPDLIIRTSGETRLSDFMLVQ-SKSSFLYFCHKLWPEFTAW 238
P P+++IRTSGE RLSDFML Q S+ + +YF ++ WP F
Sbjct: 236 EEQIEIVNYHKKLLTSDLPPPNILIRTSGEKRLSDFMLYQISEFTEIYFINEYWPIFNFL 295
Query: 239 NLINAVFAFQYDFYTNEMW 257
I + Y +
Sbjct: 296 QFIYII--LHYTIFQTTKL 312
>gnl|CDD|182175 PRK09971, PRK09971, xanthine dehydrogenase subunit XdhB;
Provisional.
Length = 291
Score = 29.6 bits (67), Expect = 2.0
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 11/56 (19%)
Query: 114 KGIRIRII-------GNIELLPSDLIASFKEAMHITKDNTEGFLNVAFSYTSRDEM 162
G+R I G + L +++ +F I + E Y RD M
Sbjct: 141 NGVRFVPINGFYTGPGKVSLEHDEILVAF----IIPPEPYEHAGGAYIKYAMRDAM 192
>gnl|CDD|217962 pfam04201, TPD52, Tumour protein D52 family. The hD52 gene was
originally identified through its elevated expression
level in human breast carcinoma. Cloning of D52
homologues from other species has indicated that D52 may
play roles in calcium-mediated signal transduction and
cell proliferation. Two human homologues of hD52, hD53
and hD54, have also been identified, demonstrating the
existence of a novel gene/protein family. These proteins
have an amino terminal coiled-coil that allows members
to form homo- and heterodimers with each other.
Length = 162
Score = 28.8 bits (64), Expect = 2.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 85 RTEEEVNGLMDLARAKFKRLIEEKDKL 111
+ EEE++ L + AK K L E K KL
Sbjct: 40 KLEEEISTLRQVLAAKEKHLAELKRKL 66
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 28.6 bits (64), Expect = 4.0
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 96 LARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITKDNTEGFLNVAF 154
RAK LI EKD G +I I + P L + E M + + F V F
Sbjct: 23 AGRAKLDTLIIEKDD---FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDF-GVKF 77
>gnl|CDD|223084 COG0005, Pnp, Purine nucleoside phosphorylase [Nucleotide transport
and metabolism].
Length = 262
Score = 28.4 bits (64), Expect = 4.2
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 57 KLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEE 107
LA L C+ + VT YA I T EEV + K +L+
Sbjct: 209 ILARELGLCV-AALSLVTNYAAGIGQ-PLTHEEVLEVAKENAEKIAKLLAA 257
>gnl|CDD|193559 cd08011, M20_ArgE_DapE_like6, M20 Peptidases with similarity to
acetylornithine deacetylases and
succinyl-diaminopimelate desuccinylases. Peptidase M20
family, Uncharacterized protein subfamily with
similarity to acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE) subfamily. This group includes the
hypothetical protein ygeY from Escherichia coli, a
putative deacetylase, but many in this subfamily are
classified as unassigned peptidases. ArgE/DapE enzymes
catalyze analogous reactions and share a common
activator, the metal ion (usually Co2+ or Zn2+). ArgE
catalyzes a broad range of substrates, including
N-acetylornithine, alpha-N-acetylmethionine and
alpha-N-formylmethionine, while DapE catalyzes the
hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP)
to L,L-diaminopimelate and succinate. Proteins in this
subfamily are mostly archaeal, and have been inferred by
homology as being related to both ArgE and DapE.
Length = 390
Score = 28.5 bits (64), Expect = 5.0
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 18/74 (24%)
Query: 76 YAFSI-------ENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLP 128
+ FSI EN + +E+ L++ A K E ++ +I + E P
Sbjct: 264 FRFSIDRRLIPEENLEEVRKEIVDLLERAEEGIKHRFE---------VKSLMIVSAEFTP 314
Query: 129 SD--LIASFKEAMH 140
D ++ + +EA+
Sbjct: 315 PDSSVVEALREAIR 328
>gnl|CDD|132321 TIGR03278, methan_mark_10, methanogenesis marker radical SAM
protein. Members of this protein family, to date, are
found in a completed prokaryotic genome if and only if
the species is one of the archaeal methanogens. It is a
radical SAM enzyme by homology. The exact function is
unknown, but likely is linked to methanogenesis. In most
genomes, the member of this family is encoded by a gene
next to, and divergently transcribed from, the methyl
coenzyme M reductase operon.
Length = 404
Score = 28.1 bits (63), Expect = 5.5
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 53 KGFDKLAETLQWCLDLGVREVTVYAFS 79
KGFD D GVREV+ F+
Sbjct: 113 KGFDDPEIAEFLI-DNGVREVSFTVFA 138
>gnl|CDD|131423 TIGR02370, pyl_corrinoid, methyltransferase cognate corrinoid
proteins, Methanosarcina family. This model describes a
subfamily of the B12 binding domain (pfam02607,
pfam02310) proteins. Members of the seed alignment
include corrinoid proteins specific to four different,
mutally non-homologous enzymes of the genus
Methanosarcina. Three of the four cognate enzymes
(trimethylamine, dimethylamine, and monomethylamine
methyltransferases) all have the unusual, ribosomally
incorporated amino acid pyrrolysine at the active site.
All act in systems in which a methyl group is
transferred to the corrinoid protein to create
methylcobalamin, from which the methyl group is later
transferred elsewhere.
Length = 197
Score = 27.8 bits (62), Expect = 5.7
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 22/87 (25%)
Query: 47 TIEG--HSKGFDKLAETLQW----CLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARA- 99
EG H G + + L+ +DLG R+V I+ ++ LM A
Sbjct: 91 VAEGDVHDIGKNIVVTMLRANGFDVIDLG-RDVP-----IDTVVEKVKKEKPLMLTGSAL 144
Query: 100 ------KFKRLIEEKDKLNEKGIRIRI 120
K + DKL E+G R +
Sbjct: 145 MTTTMYGQKDIN---DKLKEEGYRDSV 168
>gnl|CDD|217753 pfam03835, Rad4, Rad4 transglutaminase-like domain.
Length = 142
Score = 27.3 bits (61), Expect = 6.3
Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 31 FIMDGNRRYAKRSNAKT----IEGHSKGFDKLAETL 62
D RRY NAKT +E KG D L
Sbjct: 87 GAKDVTRRYCSTWNAKTRKLRVERTWKGADWWESIL 122
>gnl|CDD|131015 TIGR01960, ndhF3_CO2, NAD(P)H dehydrogenase, subunit NdhF3 family.
This family represents a subfamily of NAD(P)H
dehydrogenase subunit 5, or ndhF. It is restricted to
two paralogs in each completed cyanobacterial genome, in
which several subtypes of ndhF are found. Included in
this family is NdhF3, shown to play a role in
high-affinity CO2 uptake in Synechococcus sp. PCC7002.
In all cases, neighboring genes include a paralog of
ndhD but do include other NAD(P)H dehydrogenase
subunits. Instead, genes related to C02 uptake tend to
be found nearby.
Length = 606
Score = 28.2 bits (63), Expect = 7.0
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 222 SSFLYFCHKLWPEFT--AWNLINAVFAFQYDFYTNEMWRA 259
SF+Y + P+ + + A YDFYT++++RA
Sbjct: 505 GSFIYL-GRAIPKPIRLPLRFVQDLLA--YDFYTDKLYRA 541
>gnl|CDD|240623 cd05199, SDH_like, Saccharopine Dehydrogenase like proteins.
Saccharopine Dehydrogenase (SDH) and related proteins,
including bifunctional lysine ketoglutarate
reductase/SDH enzymes and N(5)-(carboxyethyl)ornithine
synthases. SDH catalyzes the final step in the
reversible NAD-dependent oxidative deamination of
saccharopine to alpha-ketoglutarate and lysine, in the
alpha-aminoadipate pathway of L-lysine biosynthesis. SDH
is structurally related to formate dehydrogenase and
similar enzymes, having a 2-domain structure in which a
Rossmann-fold NAD(P)-binding domain is inserted within
the linear sequence of a catalytic domain of related
structure. Bifunctional lysine ketoglutarate
reductase/SDH protein is a pair of enzymes linked on a
single polypeptide chain that catalyze the initial,
consecutive steps of lysine degradation. These proteins
are related to the 2-domain saccharopine dehydrogenases.
Length = 319
Score = 28.0 bits (63), Expect = 7.0
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 20/83 (24%)
Query: 82 NFKRTEEEVNGLMDLARAK----FKRLIEEKDKLNEKGIRIRIIGN-------IELLPSD 130
N R + GL DL RA + LI E K+ +I I G+ E+L
Sbjct: 139 NGLRAYGKKTGLFDLKRAHECSDLEELIAELKKVGLPPPKIVITGSGRVGSGAAEVL--- 195
Query: 131 LIASFKEAMHITKDNTEGFLNVA 153
+A+ I + + E FL VA
Sbjct: 196 ------KALGIKEVSPEDFLTVA 212
>gnl|CDD|221167 pfam11690, DUF3287, Protein of unknown function (DUF3287). This
eukaryotic family of proteins has no known function.
Length = 112
Score = 26.7 bits (59), Expect = 7.0
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 72 EVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSD 130
V + S E ++E +D + +RL +E+ +L +K +RI + +L S
Sbjct: 29 AVFRHLSSKE-----KKEAYDFIDKVEDQHRRLCDERRRLGKKRQDLRIERKMRMLESH 82
>gnl|CDD|227345 COG5012, COG5012, Predicted cobalamin binding protein [General
function prediction only].
Length = 227
Score = 27.3 bits (61), Expect = 7.8
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 22/88 (25%)
Query: 47 TIEG--HSKGFDKLAETLQW----CLDLGVREVTVYAFSIENFKRTEEEVN-------GL 93
T+EG H G + +A L+ +DLG R+V +E F +E+ L
Sbjct: 111 TVEGDVHDIGKNIVATMLEAAGFEVIDLG-RDV-----PVEEFVEKAKELKPDLVSMSAL 164
Query: 94 MDLARAKFKRLIEEKDKLNEKGIRIRII 121
M K +IE L E+GIR ++I
Sbjct: 165 MTTTMIGMKDVIE---LLKEEGIRDKVI 189
>gnl|CDD|219288 pfam07077, DUF1345, Protein of unknown function (DUF1345). This
family consists of several hypothetical bacterial
proteins of around 230 residues in length. The function
of this family is unknown.
Length = 181
Score = 27.2 bits (61), Expect = 8.5
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 235 FTAWNLINAVFAFQY--DFYT 253
+W L++ +FA Y +Y
Sbjct: 94 ALSWLLVHTIFALHYAHLYYQ 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.403
Gapped
Lambda K H
0.267 0.0773 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,015,146
Number of extensions: 1441062
Number of successful extensions: 1514
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1483
Number of HSP's successfully gapped: 52
Length of query: 295
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 199
Effective length of database: 6,679,618
Effective search space: 1329243982
Effective search space used: 1329243982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)