RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16152
(295 letters)
>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
{Escherichia coli [TaxId: 562]}
Length = 228
Score = 193 bits (492), Expect = 6e-62
Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 3/225 (1%)
Query: 24 HVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFSIENF 83
H +H+A IMDGN R+AK+ GH G + + + + G+ +T+YAFS EN+
Sbjct: 4 HGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENW 63
Query: 84 KRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAMHITK 143
R +EV+ LM+L L E L+ +R+RIIG+ S L +++ +T
Sbjct: 64 NRPAQEVSALMELFV---WALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTA 120
Query: 144 DNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPEPDLI 203
NT LN+A +Y R ++V+ R L + ++ + + + ++ ++ + DL+
Sbjct: 121 GNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLV 180
Query: 204 IRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
IRT GE R+S+F+L Q + LYF LWP+F + A+ AF
Sbjct: 181 IRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFA 225
>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
{Micrococcus luteus [TaxId: 1270]}
Length = 229
Score = 185 bits (471), Expect = 1e-58
Identities = 78/229 (34%), Positives = 130/229 (56%), Gaps = 3/229 (1%)
Query: 20 LKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETLQWCLDLGVREVTVYAFS 79
+ +PKHIA IMDGN R+AK+ I+GH +G + + ++ DLGV+ +T+YAFS
Sbjct: 2 INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFS 61
Query: 80 IENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRIRIIGNIELLPSDLIASFKEAM 139
EN+ R ++EVN LM L + E + N +++ IG I+ LP + EA
Sbjct: 62 TENWSRPKDEVNYLMKLPGDFLNTFLPELIEKN---VKVETIGFIDDLPDHTKKAVLEAK 118
Query: 140 HITKDNTEGFLNVAFSYTSRDEMVETSRILIDGLRTNKITNEDVTMDLFDKCLYTGTSPE 199
TK NT L A +Y R E++ +++ + ++ +I+ ++++ F++ L+T P+
Sbjct: 119 EKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYLFTANMPD 178
Query: 200 PDLIIRTSGETRLSDFMLVQSKSSFLYFCHKLWPEFTAWNLINAVFAFQ 248
P+L+IRTSGE RLS+F++ Q S F + WP+F +L + +Q
Sbjct: 179 PELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQ 227
>d1g2oa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 262
Score = 29.2 bits (65), Expect = 0.47
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 15/115 (13%)
Query: 1 MSWVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNR-------RYAKRSNAKTIEGHSK 53
++ L L +G + + G R + A + G S
Sbjct: 150 LTDAYSPRLRELARQSDPQLAEG-----VYAGLPGPHYETPAEIRMLQTLGADLV-GMST 203
Query: 54 GFD-KLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEE 107
+ A + LGV VT A I + EV + + L+ +
Sbjct: 204 VHETIAARAAGAEV-LGVSLVTNLAAGITGEPLSHAEVLAAGAASATRMGALLAD 257
>d1vmka_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Thermotoga maritima [TaxId: 2336]}
Length = 265
Score = 27.4 bits (60), Expect = 1.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 73 VTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEE 107
VT A I + + + EEV +A+ K ++ +
Sbjct: 226 VTNMAAGITHGRLSHEEVVRTTKMAQGKIEKALTT 260
>d1qe5a_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP
{Cellulomonas sp. [TaxId: 40001]}
Length = 266
Score = 26.9 bits (59), Expect = 2.6
Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 13/114 (11%)
Query: 1 MSWVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNR------RYAKRSNAKTIEGHSKG 54
++ V L + + L +G + G + G S
Sbjct: 155 LTDVYSPRLRELAHRVDPTLPEG-----VYAQFPGPHYETPAEVRMAGILGADLVGMSTT 209
Query: 55 FD-KLAETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEE 107
+ A + LGV VT A I + EV A + L+ +
Sbjct: 210 LEAIAARHCGLEV-LGVSLVTNLAAGISPTPLSHAEVIEAGQAAGPRISALLAD 262
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 26.7 bits (57), Expect = 3.4
Identities = 7/67 (10%), Positives = 17/67 (25%), Gaps = 3/67 (4%)
Query: 3 WVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTIEGHSKGFDKLAETL 62
W ++ + +++ + + D Y + + D A T
Sbjct: 19 WNLNHE---GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF 75
Query: 63 QWCLDLG 69
L
Sbjct: 76 AAESALP 82
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 26.4 bits (56), Expect = 4.6
Identities = 11/48 (22%), Positives = 17/48 (35%)
Query: 1 MSWVVDSTLNWFQYAIIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTI 48
+ S ++ I + G P IA DG + Y S T+
Sbjct: 221 KYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTV 268
Score = 25.6 bits (54), Expect = 7.9
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 16 IIKLLKKGHVPKHIAFIMDGNRRYAKRSNAKTI 48
+ + G P DG + Y +++ +
Sbjct: 24 VTATIPVGSNPMGAVISPDGTKVYVANAHSNDV 56
>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding
(Amaranthus caudatus) [TaxId: 3567]}
Length = 153
Score = 25.2 bits (55), Expect = 8.0
Identities = 4/27 (14%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 25 VPKHIAFIMDGNRRYAKRSNAKTIEGH 51
+P + + +++Y R + I+ +
Sbjct: 3 LPVIMCLKSNNHQKYL-RYQSDNIQQY 28
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 25.6 bits (55), Expect = 8.3
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 9/90 (10%)
Query: 59 AETLQWCLDLGVREVTVYAFSIENFKRTEEEVNGLMDLARAKFKRLIEEKDKLNEKGIRI 118
L + G + F TE V+ D ++ ++ + E+GI +
Sbjct: 335 DGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYL 394
Query: 119 RIIGNIELLPS---------DLIASFKEAM 139
S +A+ + M
Sbjct: 395 APSQFEAGFTSLAHTEEDIDATLAAARTVM 424
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A
homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Length = 115
Score = 24.5 bits (53), Expect = 9.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 264 SLTSAGEAFVNELYSKRDEYIAN 286
+T +A + +L S+ +EYI N
Sbjct: 93 YVTDTQKANIQKLISELEEYIKN 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.403
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,103,215
Number of extensions: 50212
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 21
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)