BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16154
(105 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14161|GIT2_HUMAN ARF GTPase-activating protein GIT2 OS=Homo sapiens GN=GIT2 PE=1
SV=2
Length = 759
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 1 MDVYDELDRREVESIWQSVCQPPVGYELAPLGVPFLPVNRSLSSMRNQGRQKLGRLNEED 60
MDVYDE+DRRE +++W + Q VPFLPVN SS RNQGRQKL R N +
Sbjct: 283 MDVYDEVDRRETDAVWLAT-QNHSALVTETTVVPFLPVNPEYSSTRNQGRQKLARFNAHE 341
Query: 61 FNTLVTDIIYIAVQR 75
F TLV DI+ A +R
Sbjct: 342 FATLVIDILSDAKRR 356
>sp|Q9JLQ2|GIT2_MOUSE ARF GTPase-activating protein GIT2 OS=Mus musculus GN=Git2 PE=1
SV=2
Length = 708
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/75 (52%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 1 MDVYDELDRREVESIWQSVCQPPVGYELAPLGVPFLPVNRSLSSMRNQGRQKLGRLNEED 60
MDVYDE+DRRE +++W + Q VPFLPVN SS RNQGRQKL R N +
Sbjct: 282 MDVYDEVDRRETDAVWLAT-QNHSTLVTETTVVPFLPVNPEYSSTRNQGRQKLARFNAHE 340
Query: 61 FNTLVTDIIYIAVQR 75
F TLV DI+ A +R
Sbjct: 341 FATLVIDILSDAKRR 355
>sp|Q9Z272|GIT1_RAT ARF GTPase-activating protein GIT1 OS=Rattus norvegicus GN=Git1
PE=1 SV=1
Length = 770
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 1 MDVYDELDRREVESIWQSVCQPPVGYELAPLGVPFLPVNRSLSSMRNQGRQKLGRLNEED 60
MDVYDE+DRRE +++W + Q VPFLPVN S+ RNQGRQKL R N +
Sbjct: 290 MDVYDEVDRRENDAVWLAT-QNHSTLVTERSAVPFLPVNPEYSATRNQGRQKLARFNARE 348
Query: 61 FNTLVTDIIYIAVQR 75
F TL+ DI+ A +R
Sbjct: 349 FATLIIDILSEAKRR 363
>sp|Q68FF6|GIT1_MOUSE ARF GTPase-activating protein GIT1 OS=Mus musculus GN=Git1 PE=1
SV=1
Length = 770
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 1 MDVYDELDRREVESIWQSVCQPPVGYELAPLGVPFLPVNRSLSSMRNQGRQKLGRLNEED 60
MDVYDE+DRRE +++W + Q VPFLPVN S+ RNQGRQKL R N +
Sbjct: 290 MDVYDEVDRRENDAVWLAT-QNHSTLVTERSAVPFLPVNPEYSATRNQGRQKLARFNARE 348
Query: 61 FNTLVTDIIYIAVQR 75
F TL+ DI+ A +R
Sbjct: 349 FATLIIDILSEAKRR 363
>sp|Q9Y2X7|GIT1_HUMAN ARF GTPase-activating protein GIT1 OS=Homo sapiens GN=GIT1 PE=1
SV=2
Length = 761
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 1 MDVYDELDRREVESIWQSVCQPPVGYELAPLGVPFLPVNRSLSSMRNQGRQKLGRLNEED 60
MDVYDE+DRRE +++W + Q VPFLPVN S+ RNQGRQKL R N +
Sbjct: 281 MDVYDEVDRRENDAVWLAT-QNHSTLVTERSAVPFLPVNPEYSATRNQGRQKLARFNARE 339
Query: 61 FNTLVTDIIYIAVQR 75
F TL+ DI+ A +R
Sbjct: 340 FATLIIDILSEAKRR 354
>sp|P23201|SPA2_YEAST Protein SPA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SPA2 PE=1 SV=1
Length = 1466
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 15/81 (18%)
Query: 2 DVYDELDRREVESIWQSVCQPPVGYELAPLGVPFLPVNRSLSSMRNQGRQKLGRLNEEDF 61
DV DEL RR I + QP +L + RNQ RQKL L++ F
Sbjct: 62 DVSDELQRR----IGEDANQPD-----------YLLPKANFHMKRNQARQKLANLSQTRF 106
Query: 62 NTLVTDIIYIAVQRGSHGELD 82
N L+ DI++ +RG +LD
Sbjct: 107 NDLLDDILFEIKRRGFDKDLD 127
>sp|Q58P69|CHX10_ARATH Cation/H(+) antiporter 10 OS=Arabidopsis thaliana GN=CHX10 PE=2
SV=2
Length = 783
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 22 PPVG------YELAPLGVPFLPVNRSLSSMRNQGRQKLGRLNEEDFNTLVTDIIYI 71
PP+G +E + V FLP++ + S+MR G + L + N+ FN +T +I +
Sbjct: 314 PPLGSALEAKFERLTMNV-FLPISITFSAMRCDGARILSQFNDIFFNIFLTFLILV 368
>sp|O64966|HMDH1_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Gossypium
hirsutum GN=HMG1 PE=3 SV=1
Length = 585
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 7 LDRREVESIWQSVCQPPVGYELAPLGV--PFLPVNRSLS 43
LD + ESI C+ PVGYE P+G+ P L R S
Sbjct: 219 LDGFDYESILGQCCEMPVGYEQIPVGIAGPLLLNGREYS 257
>sp|Q6LSD6|METE_PHOPR 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Photobacterium profundum GN=metE
PE=3 SV=1
Length = 766
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 29 APLGVPFLPVNR-----SLSSMRNQGRQ-KLGRLNEEDFNTLVTDIIYIAVQRGSHGELD 82
A L +P LP + +R Q R K G L E D+NT + I A+QR +LD
Sbjct: 426 AALNLPLLPTTTIGSFPQTNEIRTQRRDFKAGYLTEADYNTALKGHIADAIQR--QEDLD 483
Query: 83 FDFSTIFLSGHA 94
D +F+ G A
Sbjct: 484 LD---VFVHGEA 492
>sp|A1R735|SYT_ARTAT Threonine--tRNA ligase OS=Arthrobacter aurescens (strain TC1)
GN=thrS PE=3 SV=1
Length = 669
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MDVYDELDRREVESIWQSVCQPPVGYELAPLGVPFLPVNRSLSS--MRNQGRQKLGRL 56
+ +YD +DR+ ESIW +C+ P + F + RS ++ + NQ Q+L R+
Sbjct: 179 ITIYDNVDRKSGESIWCDLCRGPHLQNTKIISNAF-ALTRSSAAYWLGNQNNQQLQRI 235
>sp|B5FFR4|METE_VIBFM 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Vibrio fischeri (strain MJ11)
GN=metE PE=3 SV=1
Length = 774
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 26 YELAPLGVPFLPVNR-----SLSSMRNQ-GRQKLGRLNEEDFNTLVTDIIYIAVQRGSHG 79
++ LG+P LP S +R Q + G+LNE+D+ T + I AV+R
Sbjct: 431 HQAEKLGLPLLPTTTIGSFPQTSDIRQQRSAYRTGKLNEQDYVTAMKGHIADAVERQERL 490
Query: 80 ELD 82
+LD
Sbjct: 491 DLD 493
>sp|Q5E430|METE_VIBF1 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase OS=Vibrio fischeri (strain ATCC 700601
/ ES114) GN=metE PE=3 SV=1
Length = 774
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 26 YELAPLGVPFLPVNR-----SLSSMRNQ-GRQKLGRLNEEDFNTLVTDIIYIAVQRGSHG 79
++ LG+P LP S +R Q + G+LNE+D+ T + I AV+R
Sbjct: 431 HQAEKLGLPLLPTTTIGSFPQTSDIRQQRSAYRTGKLNEQDYVTAMKGHIADAVERQERL 490
Query: 80 ELD 82
+LD
Sbjct: 491 DLD 493
>sp|Q9BZW4|TM6S2_HUMAN Transmembrane 6 superfamily member 2 OS=Homo sapiens GN=TM6SF2
PE=2 SV=3
Length = 377
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 22 PPVGYELAPLGVPFLPVNRSLSSMRNQGRQKLGRLNEEDFNTLVTDIIYIAVQRGSHGEL 81
PP+ ++A L + LPV+ +L+ + L + L+ ++++AV SHGE+
Sbjct: 4 PPLAGKIAALSLSALPVSYALNHVSALSHPLWVAL----MSALILGLLFVAVYSLSHGEV 59
Query: 82 DFD 84
+D
Sbjct: 60 SYD 62
>sp|Q5UQF8|YL488_MIMIV Uncharacterized protein L488 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L488 PE=1 SV=1
Length = 559
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 39 NRSLSSMRNQGRQKLGRLNEEDFNTLVTD 67
N + SS + +KLG +N ED N L TD
Sbjct: 288 NDTFSSTGGKANKKLGDINTEDINNLFTD 316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,141,096
Number of Sequences: 539616
Number of extensions: 1396349
Number of successful extensions: 2654
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2639
Number of HSP's gapped (non-prelim): 16
length of query: 105
length of database: 191,569,459
effective HSP length: 74
effective length of query: 31
effective length of database: 151,637,875
effective search space: 4700774125
effective search space used: 4700774125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)