Query psy16154
Match_columns 105
No_of_seqs 100 out of 119
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 22:12:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0818|consensus 99.9 1.2E-28 2.5E-33 212.5 5.0 84 1-85 282-365 (669)
2 PF08518 GIT_SHD: Spa2 homolog 99.3 8.5E-13 1.8E-17 76.4 2.9 30 49-78 1-30 (31)
3 smart00555 GIT Helical motif i 99.1 3.5E-11 7.6E-16 69.3 2.6 30 49-78 1-30 (31)
4 PF08518 GIT_SHD: Spa2 homolog 97.6 1.2E-05 2.6E-10 46.6 -0.1 14 1-14 18-31 (31)
5 smart00555 GIT Helical motif i 96.7 0.00044 9.5E-09 39.7 -0.1 14 1-14 18-31 (31)
6 KOG0818|consensus 91.8 0.19 4.1E-06 45.2 3.6 38 41-78 257-294 (669)
7 PF06424 PRP1_N: PRP1 splicing 50.4 9.8 0.00021 28.2 1.4 26 58-92 103-128 (133)
8 PF12464 Mac: Maltose acetyltr 34.5 7.9 0.00017 23.1 -1.0 28 33-60 8-35 (55)
9 cd07562 Peptidase_S41_TRI Tric 32.1 75 0.0016 24.5 3.9 55 3-74 5-60 (266)
10 KOG1664|consensus 30.8 23 0.0005 28.6 0.8 37 42-82 70-106 (220)
11 KOG3088|consensus 30.2 55 0.0012 27.7 2.9 36 5-43 81-116 (313)
12 PF12162 STAT1_TAZ2bind: STAT1 28.8 22 0.00047 19.4 0.3 8 2-9 13-20 (23)
13 PF06732 Pescadillo_N: Pescadi 28.3 43 0.00094 27.7 2.0 32 43-77 12-43 (281)
14 PF13111 DUF3962: Protein of u 25.9 24 0.00053 28.3 0.2 42 62-104 134-178 (216)
15 KOG2481|consensus 24.7 49 0.0011 30.0 1.9 34 41-80 13-46 (570)
16 PF10537 WAC_Acf1_DNA_bd: ATP- 24.3 87 0.0019 21.9 2.7 22 58-79 78-99 (102)
17 PRK03963 V-type ATP synthase s 21.7 91 0.002 22.9 2.5 31 47-77 88-118 (198)
18 PF13006 Nterm_IS4: Insertion 20.3 45 0.00098 23.4 0.6 12 46-57 80-91 (98)
No 1
>KOG0818|consensus
Probab=99.95 E-value=1.2e-28 Score=212.51 Aligned_cols=84 Identities=44% Similarity=0.659 Sum_probs=79.5
Q ss_pred CcchhhHHHHhhhhhhhhcCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhhhcCCChhhHHHHHHHHHHHHHHhcCCCC
Q psy16154 1 MDVYDELDRREVESIWQSVCQPPVGYELAPLGVPFLPVNRSLSSMRNQGRQKLGRLNEEDFNTLVTDIIYIAVQRGSHGE 80 (105)
Q Consensus 1 mDVYDEl~RRe~e~~w~~~~~~p~~l~~~~~~~pfLp~~p~fh~kRNQARQKLA~L~~~rF~dL~~DIl~E~~RR~~~~~ 80 (105)
||||||++|||+|++|.+++++ +++..++.++||||+||+||++|||+|||||+++..+|..|++|||.+.+||+.+..
T Consensus 282 mD~yDEvdRRE~eavW~~tqnh-sal~a~~~tvpFLP~nP~~SAtRNQgRQKLArFn~~eFt~LliDil~dakRRq~g~n 360 (669)
T KOG0818|consen 282 MDVYDEVDRRETDAVWLATQNH-SALVTETTTVPFLPVNPEYSATRNQGRQKLARFNAHEFATLLIDILSDAKRRQQGSS 360 (669)
T ss_pred HHHHHHHhhhhhhhHHhhhccc-hhhcccCccccccCCCchhhhhhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999998 679999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCC
Q psy16154 81 LDFDF 85 (105)
Q Consensus 81 ~~~~~ 85 (105)
+.-..
T Consensus 361 ls~p~ 365 (669)
T KOG0818|consen 361 LSGPK 365 (669)
T ss_pred CCCCc
Confidence 74333
No 2
>PF08518 GIT_SHD: Spa2 homology domain (SHD) of GIT; InterPro: IPR013724 GIT proteins are signalling integrators with GTPase-activating function which may be involved in the organisation of the cytoskeletal matrix assembled at active zones (CAZ). The function of the CAZ might be to define sites of neurotransmitter release. Mutations in the Spa2 homology domain (SHD) domain of GIT1 described here interfere with the association of GIT1 with Piccolo, beta-PIX, and focal adhesion kinase [].
Probab=99.33 E-value=8.5e-13 Score=76.41 Aligned_cols=30 Identities=37% Similarity=0.520 Sum_probs=28.7
Q ss_pred HhhhhcCCChhhHHHHHHHHHHHHHHhcCC
Q psy16154 49 GRQKLGRLNEEDFNTLVTDIIYIAVQRGSH 78 (105)
Q Consensus 49 ARQKLA~L~~~rF~dL~~DIl~E~~RR~~~ 78 (105)
|||||++|+..+|.+|++||++|++||+.+
T Consensus 1 aRqKL~~Ls~~~F~eL~~DV~~E~~RR~~~ 30 (31)
T PF08518_consen 1 ARQKLARLSNQRFEELATDVYDELDRRETE 30 (31)
T ss_pred CcHHHHhCCHHHHHHHHHHHHHHHHHhhcc
Confidence 799999999999999999999999999865
No 3
>smart00555 GIT Helical motif in the GIT family of ADP-ribosylation factor GTPase-activating proteins. Helical motif in the GIT family of ADP-ribosylation factor GTPase-activating proteins, and in yeast Spa2p and Sph1p (CPP; unpublished results). In p95-APP1 the N-terminal GIT motif might be involved in binding PIX.
Probab=99.13 E-value=3.5e-11 Score=69.32 Aligned_cols=30 Identities=40% Similarity=0.573 Sum_probs=28.6
Q ss_pred HhhhhcCCChhhHHHHHHHHHHHHHHhcCC
Q psy16154 49 GRQKLGRLNEEDFNTLVTDIIYIAVQRGSH 78 (105)
Q Consensus 49 ARQKLA~L~~~rF~dL~~DIl~E~~RR~~~ 78 (105)
|||||++|+..+|.+|++||++|++||+.+
T Consensus 1 ar~KL~~L~~~~F~~L~~Dv~~El~RR~~e 30 (31)
T smart00555 1 ARQKLARLSDEQFQKLLTDLNDELKRRENE 30 (31)
T ss_pred CcHHHHhcCHHHHHHHHHHHHHHHHHhhcC
Confidence 799999999999999999999999999864
No 4
>PF08518 GIT_SHD: Spa2 homology domain (SHD) of GIT; InterPro: IPR013724 GIT proteins are signalling integrators with GTPase-activating function which may be involved in the organisation of the cytoskeletal matrix assembled at active zones (CAZ). The function of the CAZ might be to define sites of neurotransmitter release. Mutations in the Spa2 homology domain (SHD) domain of GIT1 described here interfere with the association of GIT1 with Piccolo, beta-PIX, and focal adhesion kinase [].
Probab=97.61 E-value=1.2e-05 Score=46.57 Aligned_cols=14 Identities=79% Similarity=1.189 Sum_probs=12.6
Q ss_pred CcchhhHHHHhhhh
Q psy16154 1 MDVYDELDRREVES 14 (105)
Q Consensus 1 mDVYDEl~RRe~e~ 14 (105)
||||||++||++++
T Consensus 18 ~DV~~E~~RR~~~a 31 (31)
T PF08518_consen 18 TDVYDELDRRETEA 31 (31)
T ss_pred HHHHHHHHHhhccC
Confidence 69999999999874
No 5
>smart00555 GIT Helical motif in the GIT family of ADP-ribosylation factor GTPase-activating proteins. Helical motif in the GIT family of ADP-ribosylation factor GTPase-activating proteins, and in yeast Spa2p and Sph1p (CPP; unpublished results). In p95-APP1 the N-terminal GIT motif might be involved in binding PIX.
Probab=96.65 E-value=0.00044 Score=39.74 Aligned_cols=14 Identities=57% Similarity=0.781 Sum_probs=12.4
Q ss_pred CcchhhHHHHhhhh
Q psy16154 1 MDVYDELDRREVES 14 (105)
Q Consensus 1 mDVYDEl~RRe~e~ 14 (105)
||||||+.||++++
T Consensus 18 ~Dv~~El~RR~~e~ 31 (31)
T smart00555 18 TDLNDELKRRENEA 31 (31)
T ss_pred HHHHHHHHHhhcCC
Confidence 69999999999863
No 6
>KOG0818|consensus
Probab=91.79 E-value=0.19 Score=45.17 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=36.1
Q ss_pred CCCchhhhHhhhhcCCChhhHHHHHHHHHHHHHHhcCC
Q psy16154 41 SLSSMRNQGRQKLGRLNEEDFNTLVTDIIYIAVQRGSH 78 (105)
Q Consensus 41 ~fh~kRNQARQKLA~L~~~rF~dL~~DIl~E~~RR~~~ 78 (105)
+|+.+=|-||-||..|+...|.+|+.|++-|.-||.-.
T Consensus 257 d~se~~k~ar~klq~l~n~~FeeL~mD~yDEvdRRE~e 294 (669)
T KOG0818|consen 257 DLSELAKAAKKKLQSLSNHLFEELAMDVYDEVDRRETD 294 (669)
T ss_pred hHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHhhhhhh
Confidence 78999999999999999999999999999999999764
No 7
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=50.38 E-value=9.8 Score=28.18 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCCcccccCC
Q psy16154 58 EEDFNTLVTDIIYIAVQRGSHGELDFDFSTIFLSG 92 (105)
Q Consensus 58 ~~rF~dL~~DIl~E~~RR~~~~~~~~~~~~~~~~~ 92 (105)
+.+|.||--+ +..-...+|..||-.|
T Consensus 103 ~~QFaDLKR~---------La~VS~eeW~~IPE~G 128 (133)
T PF06424_consen 103 QQQFADLKRS---------LATVSEEEWENIPEAG 128 (133)
T ss_pred HHHHHHHHHH---------HccCCHHHHhcCCccc
Confidence 5677777544 3446667777777555
No 8
>PF12464 Mac: Maltose acetyltransferase ; InterPro: IPR024688 Maltose acetyltransferase uses acetyl-CoA as acetyl donor to acetylate cytoplasmic maltose [], while galactoside acetyltransferase act on galactosides. ; GO: 0016407 acetyltransferase activity; PDB: 3V4E_A 4EGG_E 4DCL_A 3FTT_A 1KRR_B 1KRU_A 1KRV_C 1KQA_A 3NZ2_J 3ECT_A ....
Probab=34.53 E-value=7.9 Score=23.11 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCccCCCCCCCchhhhHhhhhcCCChhh
Q psy16154 33 VPFLPVNRSLSSMRNQGRQKLGRLNEED 60 (105)
Q Consensus 33 ~pfLp~~p~fh~kRNQARQKLA~L~~~r 60 (105)
.+|.+..|++...|.+|+.++..+++..
T Consensus 8 ~~Y~~~d~el~~~r~~a~~l~~~~N~~~ 35 (55)
T PF12464_consen 8 ELYDASDPELQEIRARAKRLLQRYNQTP 35 (55)
T ss_dssp S-EETTSHHHHHHHHHHHHHHHHHHHSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHcCC
Confidence 3688889999999999999998876654
No 9
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=32.13 E-value=75 Score=24.53 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=41.6
Q ss_pred chhhHHHHhhhhhhhhcCCCCCCCCCCCCCCCccCCCCCCCchhhhHhhhhcCC-ChhhHHHHHHHHHHHHHH
Q psy16154 3 VYDELDRREVESIWQSVCQPPVGYELAPLGVPFLPVNRSLSSMRNQGRQKLGRL-NEEDFNTLVTDIIYIAVQ 74 (105)
Q Consensus 3 VYDEl~RRe~e~~w~~~~~~p~~l~~~~~~~pfLp~~p~fh~kRNQARQKLA~L-~~~rF~dL~~DIl~E~~R 74 (105)
++|++-|...+..|... -.+-++...|.+.|.+++.. +..+|.+++..++.|+.-
T Consensus 5 ~fd~~w~~~~~~y~~~~-----------------~~g~dW~~~~~~y~~~~~~~~~~~e~~~~l~~ml~~L~d 60 (266)
T cd07562 5 MFDEAWRLVRDNFYDPD-----------------MHGVDWDAVRAEYRPLLPRAATRAELADVLNEMLGELND 60 (266)
T ss_pred HHHHHHHHHHhhccCCC-----------------CCCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcC
Confidence 57777777777643322 12568889999999999766 669999999999999853
No 10
>KOG1664|consensus
Probab=30.80 E-value=23 Score=28.57 Aligned_cols=37 Identities=32% Similarity=0.293 Sum_probs=27.3
Q ss_pred CCchhhhHhhhhcCCChhhHHHHHHHHHHHHHHhcCCCCCC
Q psy16154 42 LSSMRNQGRQKLGRLNEEDFNTLVTDIIYIAVQRGSHGELD 82 (105)
Q Consensus 42 fh~kRNQARQKLA~L~~~rF~dL~~DIl~E~~RR~~~~~~~ 82 (105)
+|...||+|+|.=. .=.|+++||+.|.++|-.+....
T Consensus 70 ~S~~lN~~RlKvL~----ar~d~i~~i~~ea~k~Ls~i~~~ 106 (220)
T KOG1664|consen 70 KSNLLNQSRLKVLR----ARDDIIDDILDEAKKRLSKVSKD 106 (220)
T ss_pred HHHHhhHHHHHHHH----HHHHHHHHHHHHHHHHHhcccCC
Confidence 45578999998732 22588999999999988775543
No 11
>KOG3088|consensus
Probab=30.18 E-value=55 Score=27.69 Aligned_cols=36 Identities=28% Similarity=0.174 Sum_probs=19.6
Q ss_pred hhHHHHhhhhhhhhcCCCCCCCCCCCCCCCccCCCCCCC
Q psy16154 5 DELDRREVESIWQSVCQPPVGYELAPLGVPFLPVNRSLS 43 (105)
Q Consensus 5 DEl~RRe~e~~w~~~~~~p~~l~~~~~~~pfLp~~p~fh 43 (105)
-||+|||.+..- ...++ ..-+=+..+.|.|+.|=||
T Consensus 81 ~ELdRREr~~a~--~g~~~-~~nNWPPLP~~~pv~Pcfy 116 (313)
T KOG3088|consen 81 QELDRRERALAR--AGIVI-RENNWPPLPSFIPVFPCFY 116 (313)
T ss_pred HHHhHHHHHHhh--ccCcc-cccCCCCCCCCCCcccccc
Confidence 378888887621 11111 1112223567888888876
No 12
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=28.77 E-value=22 Score=19.43 Aligned_cols=8 Identities=75% Similarity=1.219 Sum_probs=6.8
Q ss_pred cchhhHHH
Q psy16154 2 DVYDELDR 9 (105)
Q Consensus 2 DVYDEl~R 9 (105)
|+||||.|
T Consensus 13 ddy~~l~~ 20 (23)
T PF12162_consen 13 DDYDELER 20 (23)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 78999976
No 13
>PF06732 Pescadillo_N: Pescadillo N-terminus; InterPro: IPR010613 Pescadillo protein localises to distinct substructures of the interphase nucleus including nucleoli, the site of ribosome biogenesis. During mitosis pescadillo closely associates with the periphery of metaphase chromosomes and by late anaphase is associated with nucleolus-derived foci and prenucleolar bodies. Blastomeres in mouse embryos lacking pescadillo arrest at morula stages of development, the nucleoli fail to differentiate and accumulation of ribosomes is inhibited. It has been proposed that in mammalian cells pescadillo is essential for ribosome biogenesis and nucleologenesis and that disruption to its function results in cell cycle arrest []. ; GO: 0042254 ribosome biogenesis, 0005730 nucleolus
Probab=28.27 E-value=43 Score=27.72 Aligned_cols=32 Identities=34% Similarity=0.360 Sum_probs=23.6
Q ss_pred CchhhhHhhhhcCCChhhHHHHHHHHHHHHHHhcC
Q psy16154 43 SSMRNQGRQKLGRLNEEDFNTLVTDIIYIAVQRGS 77 (105)
Q Consensus 43 h~kRNQARQKLA~L~~~rF~dL~~DIl~E~~RR~~ 77 (105)
.-+||||.-||. |+...|+-|+ ||..|-=|.|
T Consensus 12 yiTR~qAlkkLQ-lsl~dFRRLC--ILKGIyPreP 43 (281)
T PF06732_consen 12 YITRNQALKKLQ-LSLKDFRRLC--ILKGIYPREP 43 (281)
T ss_pred cccHHHHHHHhc-CCHHHHhhHH--hhcCccCCCC
Confidence 348999999995 8999999987 3554444444
No 14
>PF13111 DUF3962: Protein of unknown function (DUF3962)
Probab=25.91 E-value=24 Score=28.33 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcC---CCCCCCCCcccccCCccCCCCCCcccc
Q psy16154 62 NTLVTDIIYIAVQRGS---HGELDFDFSTIFLSGHARDYSWPFIKD 104 (105)
Q Consensus 62 ~dL~~DIl~E~~RR~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (105)
-+|++++|||--+... +..-+.-|.++.----+---|||+ ||
T Consensus 134 Palith~Fce~p~~l~~~~~~~~el~F~~l~s~~~~EaMS~Pi-kd 178 (216)
T PF13111_consen 134 PALITHKFCEEPLHLEIGNDNQEELTFYPLRSQNICEAMSEPI-KD 178 (216)
T ss_pred HHHHHHHHhccceeeecCCCccceeEEEEeeecchhhhhcCcc-cC
Confidence 4799999998777665 445556677776333345678995 54
No 15
>KOG2481|consensus
Probab=24.69 E-value=49 Score=30.00 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=24.9
Q ss_pred CCCchhhhHhhhhcCCChhhHHHHHHHHHHHHHHhcCCCC
Q psy16154 41 SLSSMRNQGRQKLGRLNEEDFNTLVTDIIYIAVQRGSHGE 80 (105)
Q Consensus 41 ~fh~kRNQARQKLA~L~~~rF~dL~~DIl~E~~RR~~~~~ 80 (105)
.-.-+||||+.||. |+-..|+-|++ ++.-||+++
T Consensus 13 ~~YiTr~qAlKkLQ-LsLaDFRRLCI-----lKGIYP~EP 46 (570)
T KOG2481|consen 13 TNYITRSQALKKLQ-LSLADFRRLCI-----LKGIYPREP 46 (570)
T ss_pred hhhhhHHHHHHHhc-ccHHHHhhHhh-----hccccCCCc
Confidence 34568999999995 88889988763 555555544
No 16
>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays. This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.
Probab=24.27 E-value=87 Score=21.92 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHhcCCC
Q psy16154 58 EEDFNTLVTDIIYIAVQRGSHG 79 (105)
Q Consensus 58 ~~rF~dL~~DIl~E~~RR~~~~ 79 (105)
..++.+|+.||+..++.|+...
T Consensus 78 ~~rld~Lv~~v~~~~k~~ff~G 99 (102)
T PF10537_consen 78 RSRLDDLVDDVYDFFKDRFFVG 99 (102)
T ss_pred cccHHHHHHHHHHHHHHcCcCC
Confidence 4479999999999999998643
No 17
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=21.72 E-value=91 Score=22.92 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=24.7
Q ss_pred hhHhhhhcCCChhhHHHHHHHHHHHHHHhcC
Q psy16154 47 NQGRQKLGRLNEEDFNTLVTDIIYIAVQRGS 77 (105)
Q Consensus 47 NQARQKLA~L~~~rF~dL~~DIl~E~~RR~~ 77 (105)
+++++||+.++..++.+++.+++.+.-...+
T Consensus 88 ~~a~~~l~~~~~~~Y~~~l~~li~~a~~~l~ 118 (198)
T PRK03963 88 EAVRERLAELPEDEYFETLKALTKEAVEELG 118 (198)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhC
Confidence 4578888999999999999999887765543
No 18
>PF13006 Nterm_IS4: Insertion element 4 transposase N-terminal; InterPro: IPR024473 This entry represents the N-terminal domain of Insertion Element 4 transposases [].
Probab=20.31 E-value=45 Score=23.36 Aligned_cols=12 Identities=42% Similarity=0.493 Sum_probs=9.0
Q ss_pred hhhHhhhhcCCC
Q psy16154 46 RNQGRQKLGRLN 57 (105)
Q Consensus 46 RNQARQKLA~L~ 57 (105)
=-||||||+.-+
T Consensus 80 itqARqRLG~~p 91 (98)
T PF13006_consen 80 ITQARQRLGAEP 91 (98)
T ss_pred HHHHHHHcCHHH
Confidence 359999998643
Done!