Query psy16154
Match_columns 105
No_of_seqs 100 out of 119
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 22:12:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qlo_A Herpes simplex virus pr 34.5 8.2 0.00028 21.9 -0.0 10 2-11 24-33 (34)
2 2izx_A CAMP-dependent protein 32.5 38 0.0013 18.6 2.6 22 58-79 4-25 (41)
3 2kyg_A CAMP-dependent protein 27.9 48 0.0016 19.2 2.6 22 58-79 12-33 (50)
4 1unk_A Colicin E7; immunity pr 21.2 52 0.0018 21.9 2.1 21 51-71 5-25 (87)
5 1qey_A MNT-C, protein (regulat 19.8 40 0.0014 18.8 1.0 24 51-74 5-28 (31)
6 2izy_A CAMP-dependent protein 19.3 87 0.003 18.6 2.6 22 58-79 7-28 (54)
7 1gxg_A Colicin E8 immunity pro 19.3 57 0.002 21.3 1.9 21 51-71 5-25 (85)
8 2l7k_A Uncharacterized protein 18.3 67 0.0023 21.0 2.0 27 39-65 35-61 (76)
9 1fr2_A Colicin E9 immunity pro 16.2 60 0.0021 21.3 1.5 20 51-70 5-24 (86)
10 2a7w_A PRA-PH, phosphoribosyl- 15.6 78 0.0027 21.9 2.0 12 66-77 83-94 (116)
No 1
>1qlo_A Herpes simplex virus protein ICP47; membrane proteins; NMR {Herpes simplex virus} SCOP: j.35.1.1
Probab=34.46 E-value=8.2 Score=21.92 Aligned_cols=10 Identities=50% Similarity=0.873 Sum_probs=8.8
Q ss_pred cchhhHHHHh
Q psy16154 2 DVYDELDRRE 11 (105)
Q Consensus 2 DVYDEl~RRe 11 (105)
||.||+..|+
T Consensus 24 dv~~ei~kr~ 33 (34)
T 1qlo_A 24 DVRDEINKRG 33 (34)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHhcc
Confidence 8999999885
No 2
>2izx_A CAMP-dependent protein kinase type II-alpha regulatory subunit; CAMP-binding, phosphorylation, nucleotide-binding, PKA, CAMP, anchor, kinase, acetylation; 1.3A {Homo sapiens} PDB: 2hwn_A
Probab=32.49 E-value=38 Score=18.57 Aligned_cols=22 Identities=5% Similarity=0.087 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHhcCCC
Q psy16154 58 EEDFNTLVTDIIYIAVQRGSHG 79 (105)
Q Consensus 58 ~~rF~dL~~DIl~E~~RR~~~~ 79 (105)
+..+.+|+.|+..|+-|.+|.-
T Consensus 4 p~~l~~lL~~~~~~vl~~qP~d 25 (41)
T 2izx_A 4 PPGLTELLQGYTVEVLRQQPPD 25 (41)
T ss_dssp CTTHHHHHHHHHHHHHHHCCSC
T ss_pred CccHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999863
No 3
>2kyg_A CAMP-dependent protein kinase type II-alpha regul subunit; protein/protein, homodimer bound to monomer, protein binding; NMR {Homo sapiens}
Probab=27.93 E-value=48 Score=19.22 Aligned_cols=22 Identities=5% Similarity=0.087 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCC
Q psy16154 58 EEDFNTLVTDIIYIAVQRGSHG 79 (105)
Q Consensus 58 ~~rF~dL~~DIl~E~~RR~~~~ 79 (105)
+..+.+|+.|+..|+-|.+|.-
T Consensus 12 p~~l~~lL~~~~~evlr~qP~D 33 (50)
T 2kyg_A 12 PPGLTELLQGYTVEVLRQQPPD 33 (50)
T ss_dssp CTTHHHHHHHHHHHHHHHCCSC
T ss_pred CccHHHHHHHHHHHHHHHCCCC
Confidence 6789999999999999999873
No 4
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=21.24 E-value=52 Score=21.87 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=19.2
Q ss_pred hhhcCCChhhHHHHHHHHHHH
Q psy16154 51 QKLGRLNEEDFNTLVTDIIYI 71 (105)
Q Consensus 51 QKLA~L~~~rF~dL~~DIl~E 71 (105)
.||+-++..+|-+|+..|+..
T Consensus 5 ~~i~DYTE~EFl~fv~~i~~~ 25 (87)
T 1unk_A 5 NSISDYTEAEFVQLLKEIEKE 25 (87)
T ss_dssp CSGGGSCHHHHHHHHHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHhC
Confidence 589999999999999999876
No 5
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=19.80 E-value=40 Score=18.78 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=19.2
Q ss_pred hhhcCCChhhHHHHHHHHHHHHHH
Q psy16154 51 QKLGRLNEEDFNTLVTDIIYIAVQ 74 (105)
Q Consensus 51 QKLA~L~~~rF~dL~~DIl~E~~R 74 (105)
.+||.....+|..++.|+|.++.+
T Consensus 5 ER~Ad~qse~vKk~vfdtLk~~Y~ 28 (31)
T 1qey_A 5 ERLADEQSELVKKMVFDTLKDLYK 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356777788999999999988754
No 6
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=19.34 E-value=87 Score=18.56 Aligned_cols=22 Identities=5% Similarity=0.087 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHhcCCC
Q psy16154 58 EEDFNTLVTDIIYIAVQRGSHG 79 (105)
Q Consensus 58 ~~rF~dL~~DIl~E~~RR~~~~ 79 (105)
+..+.+|+.|+..|+-|.+|.-
T Consensus 7 p~~l~~lL~~f~~evlr~qP~D 28 (54)
T 2izy_A 7 PPGLTELLQGYTVEVLRQQPPD 28 (54)
T ss_dssp CTTHHHHHHHHHHHHHHHCCSC
T ss_pred CccHHHHHHHHHHHHHHHCCCC
Confidence 5689999999999999999974
No 7
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=19.29 E-value=57 Score=21.34 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=18.5
Q ss_pred hhhcCCChhhHHHHHHHHHHH
Q psy16154 51 QKLGRLNEEDFNTLVTDIIYI 71 (105)
Q Consensus 51 QKLA~L~~~rF~dL~~DIl~E 71 (105)
+||+-++..+|-+|+..|+..
T Consensus 5 ~~i~DyTe~Efi~lv~~I~~~ 25 (85)
T 1gxg_A 5 NSISDYTETEFKKIIEDIINC 25 (85)
T ss_dssp SSTTTSCHHHHHHHHHHHHHT
T ss_pred hhhhhcCHHHHHHHHHHHHhC
Confidence 589999999999999999853
No 8
>2l7k_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Clostridium difficile}
Probab=18.31 E-value=67 Score=20.99 Aligned_cols=27 Identities=15% Similarity=0.409 Sum_probs=18.5
Q ss_pred CCCCCchhhhHhhhhcCCChhhHHHHH
Q psy16154 39 NRSLSSMRNQGRQKLGRLNEEDFNTLV 65 (105)
Q Consensus 39 ~p~fh~kRNQARQKLA~L~~~rF~dL~ 65 (105)
..++-.-=.|+=+||..++..+|..|.
T Consensus 35 D~eMr~La~~tl~KL~~MTDaefael~ 61 (76)
T 2l7k_A 35 DEDMRELAKRTLAKIAPLTENEYAELA 61 (76)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHhhcc
Confidence 334333334566799999999999874
No 9
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=16.23 E-value=60 Score=21.29 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=18.0
Q ss_pred hhhcCCChhhHHHHHHHHHH
Q psy16154 51 QKLGRLNEEDFNTLVTDIIY 70 (105)
Q Consensus 51 QKLA~L~~~rF~dL~~DIl~ 70 (105)
+||+-++..+|-+||..|+.
T Consensus 5 ~~i~DyTe~Efi~lv~~I~~ 24 (86)
T 1fr2_A 5 HSISDYTEAEFLQLVTTICN 24 (86)
T ss_dssp SCGGGSBHHHHHHHHHHHHT
T ss_pred hhhhhcCHHHHHHHHHHHHh
Confidence 58999999999999999874
No 10
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=15.58 E-value=78 Score=21.90 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcC
Q psy16154 66 TDIIYIAVQRGS 77 (105)
Q Consensus 66 ~DIl~E~~RR~~ 77 (105)
.||+.|+.||..
T Consensus 83 ~dV~~eL~~R~~ 94 (116)
T 2a7w_A 83 EDVVMELHRREG 94 (116)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHhc
Confidence 589999999975
Done!