Query psy16154
Match_columns 105
No_of_seqs 100 out of 119
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 22:12:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16154.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16154hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dm9a1 d.81.4.1 (A:81-198) V- 38.2 10 0.00073 23.3 2.5 30 45-74 6-35 (118)
2 d2v4jb3 d.134.1.1 (B:136-208,B 19.1 53 0.0039 21.3 3.6 43 62-105 24-66 (177)
3 d1kcfa1 a.140.2.1 (A:3-38) Mit 18.8 19 0.0014 19.1 0.9 11 4-14 22-32 (36)
4 d1nvma1 a.5.7.1 (A:291-341) 4- 17.2 28 0.002 19.9 1.5 13 65-77 19-31 (51)
5 d1ayia_ a.28.2.1 (A:) ImmE7 pr 17.1 35 0.0025 21.2 2.1 21 51-71 5-25 (86)
6 d1gxha_ a.28.2.1 (A:) ImmE8 (I 16.1 36 0.0026 21.1 1.9 19 51-69 5-23 (85)
7 d2vlqa1 a.28.2.1 (A:4-84) ImmE 15.2 32 0.0024 21.1 1.5 20 51-70 2-21 (81)
8 d2a7wa1 a.204.1.4 (A:4-94) Pho 15.0 38 0.0028 20.7 1.9 11 66-76 80-90 (91)
9 d1zj8a3 d.134.1.1 (A:407-555) 12.7 66 0.0048 19.8 2.6 42 63-105 26-69 (149)
10 d3c7bb3 d.134.1.1 (B:123-196,B 12.3 84 0.0061 20.4 3.2 43 62-105 26-68 (179)
No 1
>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}
Probab=38.24 E-value=10 Score=23.32 Aligned_cols=30 Identities=13% Similarity=0.358 Sum_probs=25.8
Q ss_pred hhhhHhhhhcCCChhhHHHHHHHHHHHHHH
Q psy16154 45 MRNQGRQKLGRLNEEDFNTLVTDIIYIAVQ 74 (105)
Q Consensus 45 kRNQARQKLA~L~~~rF~dL~~DIl~E~~R 74 (105)
.-++|+.||+.++..+..+++..++.+.-.
T Consensus 6 v~~~a~~~l~~~~~~~Y~~~L~~Li~~a~~ 35 (118)
T d2dm9a1 6 VLEEVKRRLETMSEDEYFESVKALLKEAIK 35 (118)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChhHHHHHHHHHHHHHHH
Confidence 467899999999999999999999887644
No 2
>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite reductase subunit beta, DsrB {Desulfovibrio vulgaris [TaxId: 881]}
Probab=19.08 E-value=53 Score=21.28 Aligned_cols=43 Identities=16% Similarity=-0.022 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcccccCCccCCCCCCccccC
Q psy16154 62 NTLVTDIIYIAVQRGSHGELDFDFSTIFLSGHARDYSWPFIKDI 105 (105)
Q Consensus 62 ~dL~~DIl~E~~RR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (105)
..++.-|..|+..++.+..++..| -|-.||=..+-.-+.|+||
T Consensus 24 ~~~~~al~del~~~~~~~~lp~k~-kI~vSGCpn~C~~~~i~DI 66 (177)
T d2v4jb3 24 SGPVKAIMDEVFEDFQSMRLPAPV-RISLACCINMCGAVHCSDI 66 (177)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSSCB-CEEEESSTTCCSSGGGSSE
T ss_pred HHHHHHHHHHHHHHhccccccccc-ceeecCCCCcccccccCCe
Confidence 467778889999999998887655 4668888888888888876
No 3
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=18.79 E-value=19 Score=19.10 Aligned_cols=11 Identities=64% Similarity=0.643 Sum_probs=9.4
Q ss_pred hhhHHHHhhhh
Q psy16154 4 YDELDRREVES 14 (105)
Q Consensus 4 YDEl~RRe~e~ 14 (105)
-||+-||+.++
T Consensus 22 kdellrrivds 32 (36)
T d1kcfa1 22 KDELLRRIVDS 32 (36)
T ss_dssp TTHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 48999999886
No 4
>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain {Pseudomonas sp. [TaxId: 306]}
Probab=17.18 E-value=28 Score=19.86 Aligned_cols=13 Identities=23% Similarity=0.141 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcC
Q psy16154 65 VTDIIYIAVQRGS 77 (105)
Q Consensus 65 ~~DIl~E~~RR~~ 77 (105)
.-|||.|+.||..
T Consensus 19 ~rdil~ElGrR~~ 31 (51)
T d1nvma1 19 TLDILVELGHRRM 31 (51)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHhhccc
Confidence 4599999999975
No 5
>d1ayia_ a.28.2.1 (A:) ImmE7 protein (Im7) {Escherichia coli [TaxId: 562]}
Probab=17.10 E-value=35 Score=21.21 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.6
Q ss_pred hhhcCCChhhHHHHHHHHHHH
Q psy16154 51 QKLGRLNEEDFNTLVTDIIYI 71 (105)
Q Consensus 51 QKLA~L~~~rF~dL~~DIl~E 71 (105)
+||+-.+..+|-.++.+|+.+
T Consensus 5 ~~isDYTE~EFl~fl~~i~~~ 25 (86)
T d1ayia_ 5 NSISDYTEAEFVQLLKEIEKE 25 (86)
T ss_dssp SSGGGCCHHHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHHHHHHHHHhc
Confidence 579999999999999999764
No 6
>d1gxha_ a.28.2.1 (A:) ImmE8 (Im8) {Escherichia coli [TaxId: 562]}
Probab=16.07 E-value=36 Score=21.09 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=17.5
Q ss_pred hhhcCCChhhHHHHHHHHH
Q psy16154 51 QKLGRLNEEDFNTLVTDII 69 (105)
Q Consensus 51 QKLA~L~~~rF~dL~~DIl 69 (105)
+||+-.+..+|-+++.+|+
T Consensus 5 ~~isDYTE~EFl~fl~~i~ 23 (85)
T d1gxha_ 5 NSISDYTETEFKKIIEDII 23 (85)
T ss_dssp SSTTTSCHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHH
Confidence 5899999999999999996
No 7
>d2vlqa1 a.28.2.1 (A:4-84) ImmE9 protein (Im9) {Escherichia coli [TaxId: 562]}
Probab=15.15 E-value=32 Score=21.12 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=18.0
Q ss_pred hhhcCCChhhHHHHHHHHHH
Q psy16154 51 QKLGRLNEEDFNTLVTDIIY 70 (105)
Q Consensus 51 QKLA~L~~~rF~dL~~DIl~ 70 (105)
+||+-.+..+|-.++..|+.
T Consensus 2 ~~i~DYTE~EFl~fl~~i~~ 21 (81)
T d2vlqa1 2 HSISDYTEAEFLQLVTTICN 21 (81)
T ss_dssp CCGGGSCHHHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHHHh
Confidence 58899999999999999985
No 8
>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase HisE {Chromobacterium violaceum [TaxId: 536]}
Probab=14.99 E-value=38 Score=20.75 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=8.6
Q ss_pred HHHHHHHHHhc
Q psy16154 66 TDIIYIAVQRG 76 (105)
Q Consensus 66 ~DIl~E~~RR~ 76 (105)
.||+.|+.||+
T Consensus 80 ~dV~~eL~~R~ 90 (91)
T d2a7wa1 80 EDVVMELHRRE 90 (91)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 47888888886
No 9
>d1zj8a3 d.134.1.1 (A:407-555) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.69 E-value=66 Score=19.81 Aligned_cols=42 Identities=19% Similarity=0.221 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCC--CCCCCCCcccccCCccCCCCCCccccC
Q psy16154 63 TLVTDIIYIAVQRGSH--GELDFDFSTIFLSGHARDYSWPFIKDI 105 (105)
Q Consensus 63 dL~~DIl~E~~RR~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (105)
.++..|..++.++... ..+...| .|-.||-..+-+.|.|+||
T Consensus 26 ~~a~~l~~~l~~~~~~~~~~lp~k~-kI~iSGCpn~C~~~~i~Di 69 (149)
T d1zj8a3 26 VRAQHLVPELERRLEDINSQLDVPI-TVNINGCPNSCARIQIADI 69 (149)
T ss_dssp HHHHHHHHHHHHHTHHHHTTCCSCC-CEEEESSTTCTTCGGGSSE
T ss_pred HHHHHHHHHHHHHhhhhcccCCCce-EEEEEcCCcccccccccce
Confidence 4556666677666532 2333333 6778999999999999886
No 10
>d3c7bb3 d.134.1.1 (B:123-196,B:262-366) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=12.28 E-value=84 Score=20.44 Aligned_cols=43 Identities=16% Similarity=0.019 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCcccccCCccCCCCCCccccC
Q psy16154 62 NTLVTDIIYIAVQRGSHGELDFDFSTIFLSGHARDYSWPFIKDI 105 (105)
Q Consensus 62 ~dL~~DIl~E~~RR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (105)
.-|+.-+..|+..++.+..++..| .|-.||=.++-.=+.|+||
T Consensus 26 ~gl~~al~deL~~~~~~~~lP~k~-KI~vSGCpn~C~~~~i~DI 68 (179)
T d3c7bb3 26 SGIVKAVMDELYEYFTDHKLPAMC-RISLACCANMCGAVHASDI 68 (179)
T ss_dssp HHHHHHHHHHHHHHHSSCCBSSCC-CEEEESSTTCCSSGGGCSE
T ss_pred hHHHHHHHHHHHHHHhhccccccc-eeEEeccCCcCCCccccce
Confidence 456667788999999998888775 4777888787777777776
Done!