RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16154
         (105 letters)



>d1tx9a1 a.84.1.1 (A:7-144) Scaffolding protein gpD of
          bacteriophage procapsid {Bacteriophage phi-X174 [TaxId:
          10847]}
          Length = 138

 Score = 24.6 bits (53), Expect = 2.3
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 9/37 (24%)

Query: 56 LNEEDFNTLVTDIIYIAVQRGS---------HGELDF 83
          L E+DF+ L ++ ++IA  R           +G LDF
Sbjct: 23 LTEDDFDFLTSNKVWIATDRSRARRCVEACVYGTLDF 59


>d1x9fa_ a.1.1.2 (A:) Extracellular dodecameric hemoglobin
          (erythrocruorin), subunit IV (globin A) {Common
          earthworm (Lumbricus terrestris) [TaxId: 6398]}
          Length = 147

 Score = 23.6 bits (50), Expect = 5.4
 Identities = 7/31 (22%), Positives = 9/31 (29%)

Query: 6  ELDRREVESIWQSVCQPPVGYELAPLGVPFL 36
            DRRE+  IW  V           +     
Sbjct: 5  YEDRREIRHIWDDVWSSSFTDRRVAIVRAVF 35


>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 743

 Score = 23.6 bits (51), Expect = 6.0
 Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)

Query: 71  IAVQRGSHGELDFDF--STIFLSGHARDYSW 99
           +A           +F  S I ++G  RD+ W
Sbjct: 613 VAPDGTVSHITGGNFAQSAITINGWLRDFLW 643


>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 108

 Score = 23.0 bits (49), Expect = 6.7
 Identities = 13/37 (35%), Positives = 13/37 (35%)

Query: 21  QPPVGYELAPLGVPFLPVNRSLSSMRNQGRQKLGRLN 57
            P V Y L P G        SL        QK  RLN
Sbjct: 72  PPRVEYTLTPEGYALYDALSSLCHWGETFAQKKARLN 108


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0644    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 400,730
Number of extensions: 15677
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 7
Length of query: 105
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 40
Effective length of database: 1,515,146
Effective search space: 60605840
Effective search space used: 60605840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)