Query psy16155
Match_columns 306
No_of_seqs 262 out of 2037
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 22:13:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4171|consensus 100.0 9.9E-40 2.1E-44 321.2 18.2 170 28-306 409-580 (671)
2 KOG3619|consensus 100.0 2.1E-38 4.5E-43 322.1 16.3 183 28-240 65-258 (867)
3 smart00044 CYCc Adenylyl- / gu 100.0 1E-29 2.2E-34 221.7 18.6 182 28-241 2-185 (194)
4 KOG3619|consensus 100.0 4.1E-30 9E-35 261.7 15.6 225 6-247 587-820 (867)
5 KOG3618|consensus 100.0 1.1E-30 2.5E-35 256.5 11.1 179 28-306 1051-1233(1318)
6 KOG1023|consensus 100.0 3.1E-30 6.7E-35 251.0 10.1 233 7-292 234-478 (484)
7 PF00211 Guanylate_cyc: Adenyl 100.0 5E-28 1.1E-32 208.8 11.2 152 59-240 2-154 (184)
8 KOG3618|consensus 99.9 6.6E-28 1.4E-32 237.2 11.3 184 28-241 274-487 (1318)
9 COG2114 CyaA Adenylate cyclase 99.9 3.2E-24 6.9E-29 192.4 14.1 170 28-242 17-187 (227)
10 cd07302 CHD cyclase homology d 99.9 3.5E-23 7.6E-28 175.4 15.1 147 65-241 1-150 (177)
11 KOG1023|consensus 99.3 1.8E-13 3.9E-18 134.0 0.4 116 164-306 319-435 (484)
12 PF00211 Guanylate_cyc: Adenyl 99.2 1.8E-11 3.8E-16 105.4 5.2 118 161-306 28-145 (184)
13 cd07556 Nucleotidyl_cyc_III Cl 99.1 4.1E-09 9E-14 84.6 13.1 130 66-231 2-132 (133)
14 COG2114 CyaA Adenylate cyclase 99.0 1.2E-09 2.6E-14 98.0 7.0 106 162-306 67-176 (227)
15 smart00044 CYCc Adenylyl- / gu 98.8 7.1E-09 1.5E-13 90.1 6.9 118 162-306 57-175 (194)
16 cd07302 CHD cyclase homology d 98.8 1.1E-08 2.3E-13 86.3 7.5 119 162-306 22-140 (177)
17 KOG4171|consensus 97.6 3.1E-05 6.8E-10 78.0 2.1 43 199-241 548-590 (671)
18 cd07556 Nucleotidyl_cyc_III Cl 94.2 0.05 1.1E-06 43.0 3.5 40 266-306 93-132 (133)
19 PF05165 GGDN: GGDN family; I 93.9 0.49 1.1E-05 42.9 9.3 60 63-125 125-186 (246)
20 COG2429 Archaeal GTP cyclohydr 92.1 1.3 2.7E-05 39.6 9.1 64 63-129 129-194 (250)
21 COG3887 Predicted signaling pr 89.1 6 0.00013 40.3 11.8 165 68-298 177-364 (655)
22 PRK14538 putative bifunctional 86.2 11 0.00024 40.3 12.6 126 65-235 204-330 (838)
23 PRK10245 adrA diguanylate cycl 86.2 16 0.00035 35.0 12.8 59 63-125 234-293 (366)
24 PRK11059 regulatory protein Cs 85.1 18 0.0004 37.2 13.4 58 65-124 259-317 (640)
25 PRK09966 putative inner membra 84.4 15 0.00033 35.1 11.9 112 5-125 213-335 (407)
26 PRK02240 GTP cyclohydrolase II 81.2 13 0.00028 33.9 9.2 61 63-125 132-194 (254)
27 PRK09894 diguanylate cyclase; 80.8 25 0.00055 31.8 11.3 57 64-124 157-214 (296)
28 smart00267 GGDEF diguanylate c 77.7 32 0.00069 27.0 9.9 57 65-125 34-91 (163)
29 PRK13561 putative diguanylate 75.8 22 0.00049 36.4 10.4 108 6-124 204-314 (651)
30 COG2199 c-di-GMP synthetase (d 72.6 52 0.0011 27.3 10.3 59 63-125 49-108 (181)
31 PRK11829 biofilm formation reg 72.1 23 0.00051 36.3 9.4 111 6-125 205-319 (660)
32 PRK15426 putative diguanylate 62.0 1.8E+02 0.0038 29.1 14.7 58 64-125 428-486 (570)
33 COG3706 PleD Response regulato 58.4 1.1E+02 0.0025 30.2 10.6 55 63-124 299-357 (435)
34 PF10851 DUF2652: Protein of u 56.4 1E+02 0.0022 24.7 10.9 87 109-225 14-109 (116)
35 PRK02240 GTP cyclohydrolase II 54.0 1.5E+02 0.0033 27.1 10.0 55 68-125 4-62 (254)
36 cd01949 GGDEF Diguanylate-cycl 50.6 1.2E+02 0.0025 23.5 8.2 56 65-124 31-87 (158)
37 PF00990 GGDEF: GGDEF domain; 50.1 92 0.002 24.4 7.5 58 64-125 31-89 (161)
38 TIGR02577 cas_TM1794_Crm2 CRIS 46.9 1.5E+02 0.0033 29.7 9.7 116 63-227 341-481 (482)
39 PLN02291 phospho-2-dehydro-3-d 40.6 3.1E+02 0.0067 27.4 10.4 100 68-179 361-463 (474)
40 TIGR01358 DAHP_synth_II 3-deox 36.9 3.7E+02 0.008 26.7 10.2 97 68-176 341-440 (443)
41 PF11294 DUF3095: Protein of u 35.1 4.3E+02 0.0093 25.7 10.8 41 185-225 106-156 (373)
42 PRK09776 putative diguanylate 27.0 4.7E+02 0.01 28.4 10.4 58 63-124 694-752 (1092)
43 TIGR02578 cas_TM1811_Csm1 CRIS 25.7 5.3E+02 0.012 26.9 9.9 117 63-227 520-647 (648)
44 TIGR00254 GGDEF diguanylate cy 25.4 3.3E+02 0.0071 21.3 11.6 56 65-124 33-89 (165)
45 PRK10060 RNase II stability mo 22.1 3.3E+02 0.0072 28.2 7.7 58 64-125 265-323 (663)
No 1
>KOG4171|consensus
Probab=100.00 E-value=9.9e-40 Score=321.22 Aligned_cols=170 Identities=24% Similarity=0.413 Sum_probs=156.5
Q ss_pred cchHHHHHHHhcccHHHHHHHHccCCCCcccccceeCcEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCC
Q psy16155 28 PDPLFKFYVAGGLAVLISELYLNVSRPYRELYYEQYDSVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPK 106 (306)
Q Consensus 28 ~~~~~~~lL~~~lP~~v~~~l~~~~~~~~~~~~~~~~~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~ 106 (306)
||+|.+.||..++|+.|+++|.+++. ..+.++.+|||||+||+|||.++.. .|.+++++||++|+.||+++ .-
T Consensus 409 EKkkTd~LLy~mlP~~VA~qLr~g~~----v~a~~f~~vTilFsdIv~Ft~ic~~ctp~~vV~~LN~lyt~fD~~i--~~ 482 (671)
T KOG4171|consen 409 EKKKTDTLLYSMLPRSVAQQLRQGES----VDAKEFDDVTILFSDIVGFTAICSQCTPMQVVNMLNELYTRFDRII--DT 482 (671)
T ss_pred HHhhHHHHHHHhCCHHHHHHHHcCCC----cCccccCceEEEEeccchHHhHhhccCcHHHHHHHHHHHHHHHHhh--cc
Confidence 99999999999999999999999854 6778899999999999999999999 99999999999999999999 55
Q ss_pred CCcEEEEeEeCcEEEEeecCCccchhhhcccchhhccCCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhc-CCC
Q psy16155 107 ASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAAN-NHT 185 (306)
Q Consensus 107 ~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~gl~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~~~~~~~-~~~ 185 (306)
+ +++||+|+||+||+++|+|... ..||..++.+|+.|+...+++..+. ..+
T Consensus 483 ~-~VYKVETIGDaYm~vsG~P~~~---------------------------~~HAe~i~~~AL~Mm~~ak~v~~p~~~~p 534 (671)
T KOG4171|consen 483 H-DVYKVETIGDAYMVVSGLPDAS---------------------------DYHAEHIADLALGMMEEAKEVVSPVTGEP 534 (671)
T ss_pred c-CeEEEeeccchheeecCCCCCC---------------------------hhHHHHHHHHHHHHHHHhhhhcCcCCCCc
Confidence 6 9999999999999999999865 5899999999999999999988776 568
Q ss_pred ceEeeecccceEEEEEeCCCCcccccccchHHHHHHHHhcCCCCeEEEecccccccCcccCCCcceeeeeeeeeeeeeee
Q psy16155 186 FKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQVFGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFF 265 (306)
Q Consensus 186 l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~~~a~~g~i~Is~~~~~l~~gi~~~~~~~~~~~~~~~~~~~~~ 265 (306)
+++|||||+|
T Consensus 535 i~iRiGIHsG---------------------------------------------------------------------- 544 (671)
T KOG4171|consen 535 IQIRIGIHSG---------------------------------------------------------------------- 544 (671)
T ss_pred eEEEEEeccC----------------------------------------------------------------------
Confidence 8888887777
Q ss_pred cccccceEEEeeeccCceeeeeccchhhhhhhhhcCCCCCC
Q psy16155 266 FFFFFFFLAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306 (306)
Q Consensus 266 ~~~~~~~~~~~~g~~~~~~~~~g~~v~~a~~~~~~~~~~~~ 306 (306)
||+|||||.++|+||+||||||+||||||++.|++|
T Consensus 545 -----~VvAGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI 580 (671)
T KOG4171|consen 545 -----PVVAGVVGVKMPRYCLFGDTVNLASRMESSSVPGKI 580 (671)
T ss_pred -----CeeeeeecccccceeecCCchhhhhhhhcCCCCceE
Confidence 578999999999999999999999999999999987
No 2
>KOG3619|consensus
Probab=100.00 E-value=2.1e-38 Score=322.11 Aligned_cols=183 Identities=22% Similarity=0.400 Sum_probs=169.1
Q ss_pred cchHHHHHHHhcccHHHHHHHHccCCC----------CcccccceeCcEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHH
Q psy16155 28 PDPLFKFYVAGGLAVLISELYLNVSRP----------YRELYYEQYDSVSVMFATLVESHDTAPA-STLVSLEILNQIIC 96 (306)
Q Consensus 28 ~~~~~~~lL~~~lP~~v~~~l~~~~~~----------~~~~~~~~~~~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~ 96 (306)
++++.++||.+.+|++++..++++... ...++.+.|.+|+|+|+||+|||.+++. ++.+++.+||++|+
T Consensus 65 ~~~~qerlllsvlp~~va~~m~~~i~~~~~~~~~~~~f~~iy~~~h~nVSIl~adivgft~l~s~~saqelv~~LneLf~ 144 (867)
T KOG3619|consen 65 EKQQQERLLLSVLPAHVAMEMKKDIIESSARCKNDNQFHKLYIQRHDNVSILFADIVGFTQLASQCSAQELVKVLNELFA 144 (867)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcchhhhccchhheeeccchHhhHHHHhhhhhhhcCCCHHHHHHHHHHHHH
Confidence 888999999999999999988765431 3445677889999999999999999999 99999999999999
Q ss_pred HHHHHHhcCCCCcEEEEeEeCcEEEEeecCCccchhhhcccchhhccCCCCccccCCCCCCchHHHHHHHHHHHHHHHHH
Q psy16155 97 DFDKILFVPKASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLR 176 (306)
Q Consensus 97 ~~d~~i~~~~~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~gl~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~ 176 (306)
+||++. +.+ .+.+||..||+|.|++|+|... ++||..++++.++|.+.+.
T Consensus 145 rfd~lA--~~~-~clRiKiLGdcyyCvsglp~~~---------------------------~dHA~~~v~mgl~Mi~aI~ 194 (867)
T KOG3619|consen 145 RFDRLA--AEN-HCLRIKILGDCYYCVSGLPEAR---------------------------PDHAVCCVEMGLDMIKAIK 194 (867)
T ss_pred HHHHHH--Hhc-ceEeeeeecceeEEecCCCCCC---------------------------hhHHHHHHHHHHHHHHHHH
Confidence 999999 666 9999999999999999999654 6899999999999999999
Q ss_pred HHHHhcCCCceEeeecccceEEEEEeCCCCcccccccchHHHHHHHHhcCCCCeEEEecccccc
Q psy16155 177 KFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQVFGFYPPF 240 (306)
Q Consensus 177 ~~~~~~~~~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~~~a~~g~i~Is~~~~~l 240 (306)
.+.+.....+.+|||||+|.|.+|++|..+|+||+|++.|.+|.+||+.+.||.|+||++|.+.
T Consensus 195 ~vr~at~~dvnmrvGihsG~Vl~GvlG~~kwq~DVws~dv~lAn~mEs~G~pgrVhis~~Tl~~ 258 (867)
T KOG3619|consen 195 QVREATGVDVNMRVGIHSGSVLCGVLGLRKWQYDVWSNDVTLANHMEAGGVPGRVHISKATLDC 258 (867)
T ss_pred HHHHHhCCCCceEEEEecCceeecccccceeeeeeccchhhhhhhhhhcCCCceeEechhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887544
No 3
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=99.97 E-value=1e-29 Score=221.71 Aligned_cols=182 Identities=26% Similarity=0.362 Sum_probs=164.8
Q ss_pred cchHHHHHHHhcccHHHHHHHHccCCCCcccccceeCcEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCC
Q psy16155 28 PDPLFKFYVAGGLAVLISELYLNVSRPYRELYYEQYDSVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPK 106 (306)
Q Consensus 28 ~~~~~~~lL~~~lP~~v~~~l~~~~~~~~~~~~~~~~~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~ 106 (306)
|+++++++|.+|+|+.+++++..+.. .....+++++||+|+||+|||.+++. .|+++..+||.++..+.+++ ++
T Consensus 2 ~~~~~~~ll~~~lP~~v~~~l~~g~~---~~~~~~~~~~tvlf~di~g~t~l~~~~~~~~~~~~l~~~~~~~~~~i--~~ 76 (194)
T smart00044 2 EKRKTDRLLDQLLPASVAESLKRGGS---PVPAESYDNVTILFTDIVGFTTLSSEATPEQVVTLLNDLYSRFDRII--DR 76 (194)
T ss_pred hHHHHHHHHHHhCCHHHHHHHHhCCC---CccccccCeEEEEEeEhhhhhhhhhhCCHHHHHHHHHHHHHHHHHHH--Hh
Confidence 57889999999999999999999752 34667789999999999999999988 99999999999999999999 67
Q ss_pred CCcEEEEeEeCcEEEEeecCCccchhhhcccchhhccCCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhc-CCC
Q psy16155 107 ASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAAN-NHT 185 (306)
Q Consensus 107 ~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~gl~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~~~~~~~-~~~ 185 (306)
| +++++++.||++|++||.+... ..+++.+++.+++++++.+..++... ..+
T Consensus 77 ~-gg~v~~~~Gd~~l~~F~~~~~~--------------------------~~~~a~~a~~~al~l~~~~~~~~~~~~~~~ 129 (194)
T smart00044 77 H-GGYKVKTIGDAYMVVSGLPTEA--------------------------LVDHAELAADEALDMVESLKTVLSQHRGNG 129 (194)
T ss_pred c-CeEEEEEeCCEEEEEECCCCCc--------------------------chHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 7 9999999999999999988754 24789999999999999999887654 458
Q ss_pred ceEeeecccceEEEEEeCCCCcccccccchHHHHHHHHhcCCCCeEEEeccccccc
Q psy16155 186 FKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQVFGFYPPFG 241 (306)
Q Consensus 186 l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~~~a~~g~i~Is~~~~~l~ 241 (306)
+.+|||||+|++++|.+|...++|+++|++||.|+||++.+.+++|.+|+++++..
T Consensus 130 l~~riGih~G~v~~~~~g~~~~~~~~~G~~vn~AarL~~~a~~g~i~vs~~~~~~l 185 (194)
T smart00044 130 LRVRIGIHTGPVVAGVVGITMPRYCLFGDTVNLASRMESVGDPGQILVSEETYSLL 185 (194)
T ss_pred eeEEEEEeccceEEEecCCCCceeEEeChHHHHHHHHHhcCCCCeEEECHHHHHHH
Confidence 99999999999999999997789999999999999999999999999999998843
No 4
>KOG3619|consensus
Probab=99.97 E-value=4.1e-30 Score=261.70 Aligned_cols=225 Identities=35% Similarity=0.505 Sum_probs=192.1
Q ss_pred ccHHHHHHHHHHHHHHHHHhhc----cchHHHHHHHhcccHHHHHHHHccCCCCcccccceeCcEEEEEEecCCcCcCCC
Q psy16155 6 KDVNPICLTFEHWRWEYLFLQL----PDPLFKFYVAGGLAVLISELYLNVSRPYRELYYEQYDSVSVMFATLVESHDTAP 81 (306)
Q Consensus 6 ~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~lL~~~lP~~v~~~l~~~~~~~~~~~~~~~~~vtvlF~DI~gft~l~~ 81 (306)
+.++..++.--.|..+.+++++ .++.++.||.++||.+|+......+.+..+++.+.|.+|.|||+.|.||.+...
T Consensus 587 Rq~E~~~RlDFLWk~q~~~E~ee~e~m~~~Nr~LLeNiLPaHVA~HFl~~~~r~~eLY~qSy~~VgVMFASipnF~dFYs 666 (867)
T KOG3619|consen 587 RQVEYTARLDFLWKVQAQEEKEEMETMQNLNRLLLENILPSHVAAHFLGSKKRNEELYHQSYDCVGVMFASIPNFKDFYS 666 (867)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhcccchHHHHHhhhceEEEEEEecCCcceeee
Confidence 4567778888888888887777 778889999999999999988766664578899999999999999999988876
Q ss_pred C-----ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeecCCccchhhhcccchhhccCCCCccccCCCCC
Q psy16155 82 A-----STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGED 156 (306)
Q Consensus 82 ~-----~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~gl~~~~~~~~~~~ 156 (306)
+ ...|.+++||++++.||+++..++|++++||||+|.+|||++|+...... +.+....
T Consensus 667 E~d~NneGlECLRlLNEIIaDFDeLL~~pkF~~IEKIKTIGSTYMAAsGL~~~~~~-----------------~~~~~~~ 729 (867)
T KOG3619|consen 667 ECDVNNEGLECLRLLNEIIADFDELLSKPKFSGVEKIKTIGSTYMAASGLNPTSAQ-----------------ENDQSLR 729 (867)
T ss_pred eecCCcccchHHHHHHHHHhhHHHhcCccccccceeEEEecchhhhhhCCChhhhh-----------------ccCcchh
Confidence 6 56789999999999999999878998889988888888888887754311 0001113
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCCceEeeecccceEEEEEeCCCCcccccccchHHHHHHHHhcCCCCeEEEecc
Q psy16155 157 NTHPLVMMTCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQVFGF 236 (306)
Q Consensus 157 ~~~~a~~av~~a~~~~~~~~~~~~~~~~~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~~~a~~g~i~Is~~ 236 (306)
...|....+++|++|...++.+|......+.+||||+.||+++|++|..+|+||+||++||+|+||++++.+|.|+++++
T Consensus 730 ~~~h~~~l~eFAlal~~~L~~IN~~SfNnF~LrIGin~GpvvAGVIGArKPqYDIWGNTVNvASRMdSTGv~g~IQVTEE 809 (867)
T KOG3619|consen 730 QWSHLGALVEFALALMHKLDEINRHSFNNFELRIGINHGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPGRIQVTEE 809 (867)
T ss_pred HHhhHHHHHHHHHHHHHHHHhhhHHhhccceeeeceeccceeeeEecCCCCCccccccchhhhhcccccCCCCeEEecHH
Confidence 45788999999999999999999998899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccCC
Q psy16155 237 YPPFGDNIHLP 247 (306)
Q Consensus 237 ~~~l~~gi~~~ 247 (306)
+..+..+.+-.
T Consensus 810 t~~iL~~~gy~ 820 (867)
T KOG3619|consen 810 TANILQGLGYR 820 (867)
T ss_pred HHHHHhcCCee
Confidence 98876555444
No 5
>KOG3618|consensus
Probab=99.97 E-value=1.1e-30 Score=256.50 Aligned_cols=179 Identities=38% Similarity=0.560 Sum_probs=154.3
Q ss_pred cchHHHHHHHhcccHHHHHHHHccCCCCcccccceeCcEEEEEEecCCcCcCCCC---ChHHHHHHHHHHHHHHHHHHhc
Q psy16155 28 PDPLFKFYVAGGLAVLISELYLNVSRPYRELYYEQYDSVSVMFATLVESHDTAPA---STLVSLEILNQIICDFDKILFV 104 (306)
Q Consensus 28 ~~~~~~~lL~~~lP~~v~~~l~~~~~~~~~~~~~~~~~vtvlF~DI~gft~l~~~---~~~~~v~~Ln~~~~~~d~~i~~ 104 (306)
.+++.+-||.+++|.++++.|+...+ +++.+.++.|+|+.|++|.++.++ +.+|.++.||+++..||+++.+
T Consensus 1051 mrdQADwLL~NiIP~HvaE~LK~~~k-----YSeNH~~~gviFASIvNfnemYeEnyeGGkEflRVLNElIGDFDELLsr 1125 (1318)
T KOG3618|consen 1051 MRDQADWLLRNIIPYHVAEQLKVSQK-----YSENHDSGGVIFASIVNFNEMYEENYEGGKEFLRVLNELIGDFDELLSR 1125 (1318)
T ss_pred HHHHHHHHHhccchHHHHHHhhcccc-----ccccCccceEEEEEeccHHHHHHHhhhchHHHHHHHHHHhccHHHHhcc
Confidence 88889999999999999999998765 788999999999999999999988 8899999999999999999966
Q ss_pred CCCCcEEEEeEeCcEEEEeecCCccchhhhcccchhhccCCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16155 105 PKASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAANNH 184 (306)
Q Consensus 105 ~~~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~gl~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~~~~~~~~~ 184 (306)
..|. ..+|||++|.|||||+||+++++.+... +.+|.....+++++|++.++.+|.....
T Consensus 1126 Pdf~-------------------~iEKIKTIG~tyMAASGLnp~~~~~~~h-p~EHl~~l~eFa~amq~Vvd~FN~dlL~ 1185 (1318)
T KOG3618|consen 1126 PDFS-------------------SIEKIKTIGATYMAASGLNPAQAQDGSH-PQEHLQILFEFAKAMQRVVDDFNNDLLW 1185 (1318)
T ss_pred ccch-------------------hhHHHhhhhHHHHHhcCCChHHccCCCC-hHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6662 3456777777778888887777665544 5789999999999999999999876544
Q ss_pred -CceEeeecccceEEEEEeCCCCcccccccchHHHHHHHHhcCCCCeEEEecccccccCcccCCCcceeeeeeeeeeeee
Q psy16155 185 -TFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQVFGFYPPFGDNIHLPKFFFFFFFFFFFFFFF 263 (306)
Q Consensus 185 -~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~~~a~~g~i~Is~~~~~l~~gi~~~~~~~~~~~~~~~~~~~ 263 (306)
.+.+|+|.+.|
T Consensus 1186 Fnf~lrvG~NiG-------------------------------------------------------------------- 1197 (1318)
T KOG3618|consen 1186 FNFKLRVGFNIG-------------------------------------------------------------------- 1197 (1318)
T ss_pred eeeeEEeecccc--------------------------------------------------------------------
Confidence 66666665544
Q ss_pred eecccccceEEEeeeccCceeeeeccchhhhhhhhhcCCCCCC
Q psy16155 264 FFFFFFFFFLAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306 (306)
Q Consensus 264 ~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~a~~~~~~~~~~~~ 306 (306)
||.|||||.+|..||||||+||+||||+|||+|++|
T Consensus 1198 -------pvTAGVIGTtKLyYDIWGDtVNiASRMdsTGv~nRI 1233 (1318)
T KOG3618|consen 1198 -------PVTAGVIGTTKLYYDIWGDTVNIASRMDSTGVENRI 1233 (1318)
T ss_pred -------CccccccccceeeehhhcchhhhhhhccccCCccee
Confidence 678999999999999999999999999999999987
No 6
>KOG1023|consensus
Probab=99.96 E-value=3.1e-30 Score=250.95 Aligned_cols=233 Identities=23% Similarity=0.284 Sum_probs=197.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhc--------cchHHHHHHHhcccHHHHHHHHccCCCCcccccceeCcEEEEEEecCCcCc
Q psy16155 7 DVNPICLTFEHWRWEYLFLQL--------PDPLFKFYVAGGLAVLISELYLNVSRPYRELYYEQYDSVSVMFATLVESHD 78 (306)
Q Consensus 7 ~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~lL~~~lP~~v~~~l~~~~~~~~~~~~~~~~~vtvlF~DI~gft~ 78 (306)
.++.+.+.++.+...+++..+ ++.+.+.||.++||+.|++.++.++. ..++.+.++|++|+||+|||.
T Consensus 234 l~D~m~~~le~Y~~nLe~~v~eRt~~l~~e~~k~d~LL~~mLP~~VA~~lk~G~~----v~pe~~~~vti~fsDiv~fT~ 309 (484)
T KOG1023|consen 234 LMDSLFRMLESYADNLEKLVDERTAELEEEKKKTDTLLGQMLPKSVAESLKLGKT----VDPESFDSVTIYFSDIVGFTV 309 (484)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhHhhcCCc----CCccccCceeeeeHHHHHHHH
Confidence 356777777777777766655 88999999999999999999999866 667788999999999999999
Q ss_pred CCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeecCCccchhhhcccchhhccCCCCccccCCCCCC
Q psy16155 79 TAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDN 157 (306)
Q Consensus 79 l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~gl~~~~~~~~~~~~ 157 (306)
+++. .|.+++.+||++|+.||.++ +++ +++|++++||+||+++|+|... .
T Consensus 310 l~~~~~P~~vv~~lNdlyt~Fd~ii--~~~-d~yKVetiGDaYmvvSglp~~n--------------------------~ 360 (484)
T KOG1023|consen 310 LSSNSTPIQVVTLLNDLYTTFDRII--DKH-DVYKVETIGDAYMVVSGLPIRN--------------------------G 360 (484)
T ss_pred HHhcCCCceeeeeccchHHhhhhcc--ccc-CCeeEeccCcceeecccCceec--------------------------H
Confidence 9999 89999999999999999999 777 9999999999999999999765 2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCC--CceEeeecccceEEEEEeCCCCcccccccchHHHHHHHHhcCCCCeEEEec
Q psy16155 158 THPLVMMTCFAANMLRVLRKFNAANNH--TFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQVFG 235 (306)
Q Consensus 158 ~~~a~~av~~a~~~~~~~~~~~~~~~~--~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~~~a~~g~i~Is~ 235 (306)
..|+..++.+++.++..+....-++.. ++++|||+|+|++++|++|.+.|+|..+||+||+|+||++.+. +.|++|+
T Consensus 361 ~~H~~eia~msl~~~~~~~~f~i~H~P~~~l~iRig~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~ 439 (484)
T KOG1023|consen 361 YRHAREIASMALGLRSFLESFSLPHRPWEKLRLRIGFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSE 439 (484)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCchhhheeeccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecH
Confidence 359999999999999999998777765 8999999999999999999999999999999999999999999 9999999
Q ss_pred ccccccCcccCCCcceeeeeeeeeeeeeeecccccceEEEeeecc-Cceeeeeccchh
Q psy16155 236 FYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQ-KPLYDIWGDVVN 292 (306)
Q Consensus 236 ~~~~l~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~g~~v~ 292 (306)
+++.+.. +.+. |.--..| .--+-|+. .-.|.+.|++-.
T Consensus 440 ~~~~~l~--~~~~---------------~~~e~rG--~v~~kgkg~~~t~wl~g~~~~ 478 (484)
T KOG1023|consen 440 EAKNLLT--ERPQ---------------FETEERG--LVELKGKGVMSTYWLLGESSK 478 (484)
T ss_pred HHHHHHH--hcCc---------------eeeeccC--cEEeecCceeeeEEeccCccc
Confidence 9988554 2221 0011122 22233666 778999988653
No 7
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=99.95 E-value=5e-28 Score=208.81 Aligned_cols=152 Identities=32% Similarity=0.495 Sum_probs=140.5
Q ss_pred ccceeCcEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeecCCccchhhhccc
Q psy16155 59 YYEQYDSVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACGASRVEKIKVAGW 137 (306)
Q Consensus 59 ~~~~~~~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ 137 (306)
+.++++++||||+||+|||.+++. +|++++.+||++++.+++++ +++ ++.++++.||++|++||.+...
T Consensus 2 ~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~v--~~~-~g~~~~~~Gd~~~~~f~~~~~~------- 71 (184)
T PF00211_consen 2 YSEQYRNVTVLFADIVGFTDLTEQLDPEELVRLLNDFFSSLDRIV--KQH-GGEIIKFIGDGVMAVFGLPEPD------- 71 (184)
T ss_dssp EEEEEEEEEEEEEEETTHHHHHHHSHHHHHHHHHHHHHHHHHHHH--HHT-TEEEEEEETTEEEEEESSSSCH-------
T ss_pred CccccCeEEEEEEEecCcHHHHHhCCchhHHHHHHHHHHHhhhcc--ccc-cccccccccceeEEEecccccc-------
Confidence 456788999999999999999998 79999999999999999999 666 8999999999999999999443
Q ss_pred chhhccCCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCceEeeecccceEEEEEeCCCCcccccccchHH
Q psy16155 138 TYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVN 217 (306)
Q Consensus 138 ty~aa~gl~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~~~~~~~~~~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn 217 (306)
.+++..++++++++.+.+++++.....++.+|||||+|++++|.+|..++.|+++|++||
T Consensus 72 --------------------~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~rIGI~~G~v~~g~~G~~~~~~~v~G~~vn 131 (184)
T PF00211_consen 72 --------------------EDAAERAVQFALALLEALERLNKESGPPLSVRIGIHTGPVVVGVVGSRRPEYDVFGDAVN 131 (184)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHSS-EEEEEEEEEEEEEEEEESSSEEEEEESHHHH
T ss_pred --------------------ccccccccccccchhhcccccccccceeeeeeccccccccccccccCcccceeeeehhhh
Confidence 578899999999999999999888778999999999999999999988899999999999
Q ss_pred HHHHHHhcCCCCeEEEecccccc
Q psy16155 218 LASRMDSTGLPNEIQVFGFYPPF 240 (306)
Q Consensus 218 ~A~rm~~~a~~g~i~Is~~~~~l 240 (306)
+|+||++.+.+++|+||+++++.
T Consensus 132 ~Aarl~~~a~~~~i~vs~~v~~~ 154 (184)
T PF00211_consen 132 IAARLESLAPPGQILVSEEVYDA 154 (184)
T ss_dssp HHHHHHHTSSTTSEEEEHHHHHH
T ss_pred hhHHHHHhhcccccccCHHHHHH
Confidence 99999999999999999999883
No 8
>KOG3618|consensus
Probab=99.95 E-value=6.6e-28 Score=237.18 Aligned_cols=184 Identities=21% Similarity=0.397 Sum_probs=164.6
Q ss_pred cchHHHHHHHhcccHHHHHHHHccCCCCcc-----------------------------cccceeCcEEEEEEecCCcCc
Q psy16155 28 PDPLFKFYVAGGLAVLISELYLNVSRPYRE-----------------------------LYYEQYDSVSVMFATLVESHD 78 (306)
Q Consensus 28 ~~~~~~~lL~~~lP~~v~~~l~~~~~~~~~-----------------------------~~~~~~~~vtvlF~DI~gft~ 78 (306)
|++--++++.+.+|+.|++.|+.....+.. -..+...+|+|||+||+|||.
T Consensus 274 EkqlKe~MIhSVMP~kvAD~Llk~g~~pS~nd~~~~~~~s~~~r~~~s~~vk~~~~FRPF~M~~menVSILFADIvGFTk 353 (1318)
T KOG3618|consen 274 EKQLKERMIHSVMPRKVADDLLKQGDEPSENDVKRHATSSPKNRKKKSSIVKAPIAFRPFKMQQMENVSILFADIVGFTK 353 (1318)
T ss_pred HHHHHHHHHHhhcChHHHHHHHhhcCCCCcccccCCCCCCcccccchhhccccccccCchhhhhhhhhhhhhhhhhchhh
Confidence 777888899999999999998776541110 012233599999999999999
Q ss_pred CCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeecCCccchhhhcccchhhccCCCCccccCCCCCC
Q psy16155 79 TAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDN 157 (306)
Q Consensus 79 l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~gl~~~~~~~~~~~~ 157 (306)
+++. ..++++.+||++|..||+++ +-- +++||.|.||+|.|+.|.|.+.
T Consensus 354 MSsnKsA~~LV~lLNDLFgRFD~LC--~l~-gcEKISTLGDCYYCVaGCPEPr--------------------------- 403 (1318)
T KOG3618|consen 354 MSSNKSAHALVGLLNDLFGRFDRLC--ELT-GCEKISTLGDCYYCVAGCPEPR--------------------------- 403 (1318)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHH--Hhc-CcchhccccceeeeecCCCCCc---------------------------
Confidence 9999 89999999999999999999 434 9999999999999999999764
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCceEeeecccceEEEEEeCCCCcccccccchHHHHHHHHhcCCCCeEEEeccc
Q psy16155 158 THPLVMMTCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQVFGFY 237 (306)
Q Consensus 158 ~~~a~~av~~a~~~~~~~~~~~~~~~~~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~~~a~~g~i~Is~~~ 237 (306)
.+|+.++++|.+.|+++++++..+....+.+|+|+|+|.|++|++|.+|..+|+|.+.|++|..||+.+.+|+|+||++|
T Consensus 404 aDHA~ccvEMGLgMI~AirqFd~~r~e~VnMRVGvHTGtVlCGivGtrRfKFDVwSNDV~LAN~MEssGvag~VHiSeaT 483 (1318)
T KOG3618|consen 404 ADHAYCCVEMGLGMIKAIRQFDQERKEMVNMRVGVHTGTVLCGIVGTRRFKFDVWSNDVNLANLMESSGVAGKVHISEAT 483 (1318)
T ss_pred ccceeeehhhcchHHHHHHHHHHHhhcccceEEEEecceEEeeeeecceEeeeeccCcchHHHHHHhcCCCcceEeeHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q psy16155 238 PPFG 241 (306)
Q Consensus 238 ~~l~ 241 (306)
..+.
T Consensus 484 ak~L 487 (1318)
T KOG3618|consen 484 AKYL 487 (1318)
T ss_pred HHHh
Confidence 6654
No 9
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.91 E-value=3.2e-24 Score=192.39 Aligned_cols=170 Identities=19% Similarity=0.267 Sum_probs=133.1
Q ss_pred cchHHHHHHHhcccHHHHHHHHccCCCCcccccceeCcEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCC
Q psy16155 28 PDPLFKFYVAGGLAVLISELYLNVSRPYRELYYEQYDSVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPK 106 (306)
Q Consensus 28 ~~~~~~~lL~~~lP~~v~~~l~~~~~~~~~~~~~~~~~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~ 106 (306)
........+..+++..+.+++..... . . +.+|+||+||+|||.+++. +|.++..+||.++..+..++ ++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~-~~vtilfaDi~g~T~l~~~~~~~~~~~ll~~~~~~~~~~v--~~ 86 (227)
T COG2114 17 AGLRSDLVLRLYLARVVGRLLARGGA------G-D-RRVTLLFADIVGSTELSESLGDEALVELLNLYFDAVAEVV--AR 86 (227)
T ss_pred hhhhhhHHHHHHhhhccchhhccccc------c-C-ceEEEEEEeeccchHHhhhCCHHHHHHHHHHHHHHHHHHH--HH
Confidence 33444556666777777766655421 1 1 7899999999999999999 88899999999999999999 56
Q ss_pred CCcEEEEeEeCcEEEEeecCCccchhhhcccchhhccCCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy16155 107 ASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAANNHTF 186 (306)
Q Consensus 107 ~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~gl~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~~~~~~~~~~l 186 (306)
| ++.++|++||++|++||.|... .+....+....+++.+...+.+.. .+
T Consensus 87 ~-gG~v~k~iGD~~la~F~~p~~~---------------------------~~A~~~a~~~~~~~~~~~~~~~~~---~l 135 (227)
T COG2114 87 H-GGRVVKFIGDGFLAVFGRPSPL---------------------------EDAVACALDLQLALRNPLARLRRE---SL 135 (227)
T ss_pred c-CCEEEEEecceEEEEeCCCCCc---------------------------HHHHHHHHHHHHHHHHHHhhccCc---Ce
Confidence 6 9999999999999999999854 111112222344444444443322 38
Q ss_pred eEeeecccceEEEEEeCCCCcccccccchHHHHHHHHhcCCCCeEEEecccccccC
Q psy16155 187 KLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQVFGFYPPFGD 242 (306)
Q Consensus 187 ~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~~~a~~g~i~Is~~~~~l~~ 242 (306)
++|||||+|++++|..|. ||++|++||+|+|||+.+++++|.+|+++++...
T Consensus 136 ~~riGi~~G~vv~~~~g~----~~~~G~~VN~AaRLe~~a~~g~i~iS~~~~~~~~ 187 (227)
T COG2114 136 RVRIGIHTGEVVVGNTGG----YTVVGSAVNQAARLESLAKPGQVLLSEATYDLVR 187 (227)
T ss_pred eEEEEEEeecEEEEeecC----eeEechHhHHHHHHHHhcCCCeEEEcHHHHHHHh
Confidence 999999999999999987 9999999999999999999999999999988544
No 10
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.90 E-value=3.5e-23 Score=175.38 Aligned_cols=147 Identities=31% Similarity=0.413 Sum_probs=136.3
Q ss_pred cEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeecCCccchhhhcccchhhcc
Q psy16155 65 SVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAAC 143 (306)
Q Consensus 65 ~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~ 143 (306)
++||+|+||+|||.+++. ++++++.++|.+++.+++++ +++ ++.++++.||+++++|+.+...
T Consensus 1 ~~~il~~di~~~t~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~-~g~~~~~~gd~~~~~f~~~~~~------------- 64 (177)
T cd07302 1 EVTVLFADIVGFTALSERLGPEELVELLNEYFSAFDEII--ERH-GGTVDKTIGDAVMAVFGLPGAH------------- 64 (177)
T ss_pred CEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHH--HHc-CCEEEEEeCceEEEEeCCCCCc-------------
Confidence 489999999999999998 99999999999999999999 557 9999999999999999988653
Q ss_pred CCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHh--cCCCceEeeecccceEEEEEeCCCCcccccccchHHHHHH
Q psy16155 144 GLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAA--NNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASR 221 (306)
Q Consensus 144 gl~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~~~~~~--~~~~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~r 221 (306)
.+++.+|+.+|+++++.+...+.. ....+.+|||||+|+++.|.+|.++++|+++|++||+|+|
T Consensus 65 --------------~~~~~~A~~~a~~i~~~~~~~~~~~~~~~~~~~riGi~~G~~~~g~~g~~~~~~~~~G~~v~~A~r 130 (177)
T cd07302 65 --------------EDHAERAVRAALEMQEALAELNAEREGGPPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAAR 130 (177)
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEecceEEEEecCCCCcceeEecchHhHHHH
Confidence 578899999999999999998876 4568999999999999999999999999999999999999
Q ss_pred HHhcCCCCeEEEeccccccc
Q psy16155 222 MDSTGLPNEIQVFGFYPPFG 241 (306)
Q Consensus 222 m~~~a~~g~i~Is~~~~~l~ 241 (306)
|++.+++++|++|+++++..
T Consensus 131 l~~~a~~~~i~vs~~~~~~l 150 (177)
T cd07302 131 LESLAKPGQILVSEATYELL 150 (177)
T ss_pred HHhcCCCCEEEECHHHHHhh
Confidence 99999999999999998844
No 11
>KOG1023|consensus
Probab=99.33 E-value=1.8e-13 Score=133.97 Aligned_cols=116 Identities=22% Similarity=0.191 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEeeecccceEEEEEeCCCCcc-cccccchHHHHHHHHhcCCCCeEEEecccccccC
Q psy16155 164 MTCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPL-YDIWGDVVNLASRMDSTGLPNEIQVFGFYPPFGD 242 (306)
Q Consensus 164 av~~a~~~~~~~~~~~~~~~~~l~vrIGi~~G~v~~Gv~G~~~~~-y~v~G~~Vn~A~rm~~~a~~g~i~Is~~~~~l~~ 242 (306)
.+.+..++....+.+.+.+...- --+.|+.++.+.|.+.+. +.++.+.+.++..+.+....-.+ . +.-..
T Consensus 319 vv~~lNdlyt~Fd~ii~~~d~yK----VetiGDaYmvvSglp~~n~~~H~~eia~msl~~~~~~~~f~i--~---H~P~~ 389 (484)
T KOG1023|consen 319 VVTLLNDLYTTFDRIIDKHDVYK----VETIGDAYMVVSGLPIRNGYRHAREIASMALGLRSFLESFSL--P---HRPWE 389 (484)
T ss_pred eeeeccchHHhhhhcccccCCee----EeccCcceeecccCceecHhHHHHHHHHHHHHHHHHHhccCC--C---CCCch
Confidence 67888888888888776665533 225579999999996555 66899999999998886443222 1 11122
Q ss_pred cccCCCcceeeeeeeeeeeeeeecccccceEEEeeeccCceeeeeccchhhhhhhhhcCCCCCC
Q psy16155 243 NIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306 (306)
Q Consensus 243 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~a~~~~~~~~~~~~ 306 (306)
.+.+++ |+|+||++|||||.+.|+||+||||||+||||+|+|+ ++|
T Consensus 390 ~l~iRi-----------------g~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i 435 (484)
T KOG1023|consen 390 KLRLRI-----------------GFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMI 435 (484)
T ss_pred hhheee-----------------ccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEE
Confidence 566676 8888899999999999999999999999999999998 765
No 12
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=99.19 E-value=1.8e-11 Score=105.41 Aligned_cols=118 Identities=23% Similarity=0.274 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceEeeecccceEEEEEeCCCCcccccccchHHHHHHHHhcCCCCeEEEecccccc
Q psy16155 161 LVMMTCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQVFGFYPPF 240 (306)
Q Consensus 161 a~~av~~a~~~~~~~~~~~~~~~~~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~~~a~~g~i~Is~~~~~l 240 (306)
+..++.+...+...+.++...+... .+ =..|+.++.++|.+.+..+..-+++++|..|.+.... -..+.
T Consensus 28 ~~~~~~~l~~~~~~~~~~v~~~~g~---~~-~~~Gd~~~~~f~~~~~~~~~~~~a~~~al~~~~~~~~-------~~~~~ 96 (184)
T PF00211_consen 28 PEELVRLLNDFFSSLDRIVKQHGGE---II-KFIGDGVMAVFGLPEPDEDAAERAVQFALALLEALER-------LNKES 96 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEE---EE-EEETTEEEEEESSSSCHCHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred chhHHHHHHHHHHHhhhcccccccc---cc-ccccceeEEEeccccccccccccccccccchhhcccc-------ccccc
Confidence 5567777777777888777666521 11 1448999999999877778888889988888765211 00000
Q ss_pred cCcccCCCcceeeeeeeeeeeeeeecccccceEEEeeeccCceeeeeccchhhhhhhhhcCCCCCC
Q psy16155 241 GDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306 (306)
Q Consensus 241 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~a~~~~~~~~~~~~ 306 (306)
...+++++ |+++|+++.|++|..+|.||+||++||.|+||++.+.|++|
T Consensus 97 ~~~~~~rI-----------------GI~~G~v~~g~~G~~~~~~~v~G~~vn~Aarl~~~a~~~~i 145 (184)
T PF00211_consen 97 GPPLSVRI-----------------GIHTGPVVVGVVGSRRPEYDVFGDAVNIAARLESLAPPGQI 145 (184)
T ss_dssp HSS-EEEE-----------------EEEEEEEEEEEEESSSEEEEEESHHHHHHHHHHHTSSTTSE
T ss_pred ceeeeeec-----------------cccccccccccccCcccceeeeehhhhhhHHHHHhhccccc
Confidence 23566665 99999999999998899999999999999999999999975
No 13
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=99.06 E-value=4.1e-09 Score=84.60 Aligned_cols=130 Identities=33% Similarity=0.582 Sum_probs=105.9
Q ss_pred EEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeecCCccchhhhcccchhhccC
Q psy16155 66 VSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACG 144 (306)
Q Consensus 66 vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~g 144 (306)
++++++||.+|+.+.+. +....-++|..+...+.+.+ ..+ ++...++.||.+++++...
T Consensus 2 ~~ll~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~--~~~-~~~~~r~~~d~f~~l~~~~----------------- 61 (133)
T cd07556 2 VTILFADIVGFTSLADALGPDEGDELLNELAGRFDSLI--RRS-GDLKIKTIGDEFMVVSGLD----------------- 61 (133)
T ss_pred EEEEEEEchhhHHHHhcCCHHHHHHHHHHHHHHHHHHH--HHc-CcEEEEeecceEEEEECch-----------------
Confidence 68999999999999999 77888899999999999999 444 5567789999999997531
Q ss_pred CCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCceEeeecccceEEEEEeCCCCcccccccchHHHHHHHHh
Q psy16155 145 LEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDS 224 (306)
Q Consensus 145 l~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~~~~~~~~~~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~~ 224 (306)
....+..++..+.+.+............+++|++.|++..+..|. ++.++.+|+.++.|.+++.
T Consensus 62 ---------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ig~~~g~~~~~~~~~-~~~~~~~~~~~~~a~~a~~ 125 (133)
T cd07556 62 ---------------HPAAAVAFAEDMREAVSALNQSEGNPVRVRIGIHTGPVVVGVIGS-RPQYDVWGALVNLASRMES 125 (133)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHhccCCceEEEEEEecccEEEEeccC-CccceEEcHHHHHHHHHHh
Confidence 123456667777776665543344578899999999999998888 8889999999999999999
Q ss_pred cCCCCeE
Q psy16155 225 TGLPNEI 231 (306)
Q Consensus 225 ~a~~g~i 231 (306)
.+++++|
T Consensus 126 ~a~~~~i 132 (133)
T cd07556 126 QAKAGQV 132 (133)
T ss_pred cCCCCCc
Confidence 9888765
No 14
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=98.96 E-value=1.2e-09 Score=98.00 Aligned_cols=106 Identities=19% Similarity=0.188 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEeeecccceEEEEEeCCCCcccccccchHHHHHH----HHhcCCCCeEEEeccc
Q psy16155 162 VMMTCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASR----MDSTGLPNEIQVFGFY 237 (306)
Q Consensus 162 ~~av~~a~~~~~~~~~~~~~~~~~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~r----m~~~a~~g~i~Is~~~ 237 (306)
...++......+.+......+...+.-.|| |.++..+|.+.+.- +++..|.. +...... ....
T Consensus 67 ~~~~~ll~~~~~~~~~~v~~~gG~v~k~iG----D~~la~F~~p~~~~----~A~~~a~~~~~~~~~~~~~----~~~~- 133 (227)
T COG2114 67 EALVELLNLYFDAVAEVVARHGGRVVKFIG----DGFLAVFGRPSPLE----DAVACALDLQLALRNPLAR----LRRE- 133 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEec----ceEEEEeCCCCCcH----HHHHHHHHHHHHHHHHHhh----ccCc-
Confidence 346677777778888877777766655555 99999999977665 66666552 2221110 0000
Q ss_pred ccccCcccCCCcceeeeeeeeeeeeeeecccccceEEEeeeccCceeeeeccchhhhhhhhhcCCCCCC
Q psy16155 238 PPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306 (306)
Q Consensus 238 ~~l~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~a~~~~~~~~~~~~ 306 (306)
.++.++ |+|+|+++.|.+|+ ||+|||+||+|+||++.+.||+|
T Consensus 134 -----~l~~ri-----------------Gi~~G~vv~~~~g~----~~~~G~~VN~AaRLe~~a~~g~i 176 (227)
T COG2114 134 -----SLRVRI-----------------GIHTGEVVVGNTGG----YTVVGSAVNQAARLESLAKPGQV 176 (227)
T ss_pred -----CeeEEE-----------------EEEeecEEEEeecC----eeEechHhHHHHHHHHhcCCCeE
Confidence 155565 88999999999988 99999999999999999999875
No 15
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=98.83 E-value=7.1e-09 Score=90.10 Aligned_cols=118 Identities=23% Similarity=0.187 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEeeecccceEEEEEeCCCCcc-cccccchHHHHHHHHhcCCCCeEEEecccccc
Q psy16155 162 VMMTCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPL-YDIWGDVVNLASRMDSTGLPNEIQVFGFYPPF 240 (306)
Q Consensus 162 ~~av~~a~~~~~~~~~~~~~~~~~l~vrIGi~~G~v~~Gv~G~~~~~-y~v~G~~Vn~A~rm~~~a~~g~i~Is~~~~~l 240 (306)
..+......+.+.+.+....++.. +--..|+.++..+|.+... .+..-.++..|.++.+....-. ... .
T Consensus 57 ~~~~~~l~~~~~~~~~~i~~~gg~----v~~~~Gd~~l~~F~~~~~~~~~~a~~a~~~al~l~~~~~~~~----~~~--~ 126 (194)
T smart00044 57 EQVVTLLNDLYSRFDRIIDRHGGY----KVKTIGDAYMVVSGLPTEALVDHAELAADEALDMVESLKTVL----SQH--R 126 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCeE----EEEEeCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHHHH----hhc--c
Confidence 345566666666677666665432 2234579999999986544 3555666777777765421110 000 0
Q ss_pred cCcccCCCcceeeeeeeeeeeeeeecccccceEEEeeeccCceeeeeccchhhhhhhhhcCCCCCC
Q psy16155 241 GDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306 (306)
Q Consensus 241 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~a~~~~~~~~~~~~ 306 (306)
..+++.++ |+|+|++++|.+|..+|.||+||++||+|+||++.+.||+|
T Consensus 127 ~~~l~~ri-----------------Gih~G~v~~~~~g~~~~~~~~~G~~vn~AarL~~~a~~g~i 175 (194)
T smart00044 127 GNGLRVRI-----------------GIHTGPVVAGVVGITMPRYCLFGDTVNLASRMESVGDPGQI 175 (194)
T ss_pred CCCeeEEE-----------------EEeccceEEEecCCCCceeEEeChHHHHHHHHHhcCCCCeE
Confidence 23566665 89999999999999989999999999999999999999986
No 16
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=98.82 E-value=1.1e-08 Score=86.28 Aligned_cols=119 Identities=24% Similarity=0.247 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEeeecccceEEEEEeCCCCcccccccchHHHHHHHHhcCCCCeEEEeccccccc
Q psy16155 162 VMMTCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQVFGFYPPFG 241 (306)
Q Consensus 162 ~~av~~a~~~~~~~~~~~~~~~~~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~~~a~~g~i~Is~~~~~l~ 241 (306)
.........+.+.+.++...+...+. -..|+.++..++.+...-+..-.++..|.+|++....-.... ...
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~g~~~----~~~gd~~~~~f~~~~~~~~~~~~A~~~a~~i~~~~~~~~~~~-----~~~ 92 (177)
T cd07302 22 EELVELLNEYFSAFDEIIERHGGTVD----KTIGDAVMAVFGLPGAHEDHAERAVRAALEMQEALAELNAER-----EGG 92 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEE----EEeCceEEEEeCCCCCchhHHHHHHHHHHHHHHHHHHHhhcc-----cCC
Confidence 45566666777777776666443322 235799999999877777777788888888887522111110 112
Q ss_pred CcccCCCcceeeeeeeeeeeeeeecccccceEEEeeeccCceeeeeccchhhhhhhhhcCCCCCC
Q psy16155 242 DNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306 (306)
Q Consensus 242 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~a~~~~~~~~~~~~ 306 (306)
..+.+++ |+++|++++|.+|..++.|++||++||+|+||++.+.||+|
T Consensus 93 ~~~~~ri-----------------Gi~~G~~~~g~~g~~~~~~~~~G~~v~~A~rl~~~a~~~~i 140 (177)
T cd07302 93 PPLRLRI-----------------GIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQI 140 (177)
T ss_pred CCeEEEE-----------------EEecceEEEEecCCCCcceeEecchHhHHHHHHhcCCCCEE
Confidence 2455554 89999999999999999999999999999999999999876
No 17
>KOG4171|consensus
Probab=97.57 E-value=3.1e-05 Score=78.04 Aligned_cols=43 Identities=47% Similarity=0.618 Sum_probs=40.1
Q ss_pred EEEeCCCCcccccccchHHHHHHHHhcCCCCeEEEeccccccc
Q psy16155 199 AGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQVFGFYPPFG 241 (306)
Q Consensus 199 ~Gv~G~~~~~y~v~G~~Vn~A~rm~~~a~~g~i~Is~~~~~l~ 241 (306)
+||+|.+.|+|.++|++||+|+|||+...|++|++|+.|++..
T Consensus 548 AGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~~l 590 (671)
T KOG4171|consen 548 AGVVGVKMPRYCLFGDTVNLASRMESSSVPGKINVSPTTYRKL 590 (671)
T ss_pred eeeecccccceeecCCchhhhhhhhcCCCCceEEeCHHHHHHH
Confidence 4799999999999999999999999999999999999997753
No 18
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=94.23 E-value=0.05 Score=42.95 Aligned_cols=40 Identities=43% Similarity=0.738 Sum_probs=36.9
Q ss_pred cccccceEEEeeeccCceeeeeccchhhhhhhhhcCCCCCC
Q psy16155 266 FFFFFFFLAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306 (306)
Q Consensus 266 ~~~~~~~~~~~~g~~~~~~~~~g~~v~~a~~~~~~~~~~~~ 306 (306)
|++.|++..+..|. ++.++.+|+.+|.|+++.+.+.||+|
T Consensus 93 g~~~g~~~~~~~~~-~~~~~~~~~~~~~a~~a~~~a~~~~i 132 (133)
T cd07556 93 GIHTGPVVVGVIGS-RPQYDVWGALVNLASRMESQAKAGQV 132 (133)
T ss_pred EEecccEEEEeccC-CccceEEcHHHHHHHHHHhcCCCCCc
Confidence 77788899998888 99999999999999999999999986
No 19
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=93.85 E-value=0.49 Score=42.86 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=44.9
Q ss_pred eCcEEEEEEecCCcC-cCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeec
Q psy16155 63 YDSVSVMFATLVESH-DTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACG 125 (306)
Q Consensus 63 ~~~vtvlF~DI~gft-~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G 125 (306)
-..|+|.-.||.++| .+++. +|-+....+++++..+.+.+ +++ ++.--=.-||.+|+++.
T Consensus 125 d~~v~iAH~DI~d~T~~~Td~~~~ydt~~~I~~l~~~l~~~~--~~~-G~L~fylGGDNi~~v~p 186 (246)
T PF05165_consen 125 DGYVQIAHFDINDSTGTYTDEESPYDTYLEIEDLYAKLMKYL--EKY-GSLAFYLGGDNIMAVCP 186 (246)
T ss_dssp S--EEEEEEEETTHHHHTTTTS-HHHHHHHHHHHHHHHHHHH--HTT-T---EEEETTEEEEE-T
T ss_pred CCceEEEEEeeeccchhhhcccChHHHHHHHHHHHHHHHHHH--Hhc-CCEEEEecCceEEEECC
Confidence 457999999999999 88877 88898888899999988888 455 66554467999999873
No 20
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=92.09 E-value=1.3 Score=39.63 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=51.1
Q ss_pred eCcEEEEEEecCCcC-cCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeecCCcc
Q psy16155 63 YDSVSVMFATLVESH-DTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACGASRV 129 (306)
Q Consensus 63 ~~~vtvlF~DI~gft-~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G~~~~ 129 (306)
-..+.|.-.||.+-| +++.. +|-.....+++.+..+.+-+ +++ ++..-=.-||.+|+++....+
T Consensus 129 dg~v~IAH~Dvn~~Tgt~Td~~~~~~t~~~I~~~~~~L~~~l--~k~-gal~fflGGDN~ma~~p~~s~ 194 (250)
T COG2429 129 DGYVQIAHFDVNDATGTYTDIVSPYDTYTEIQRVYATLMRFL--EKI-GALLFFLGGDNIMAVCPGLSA 194 (250)
T ss_pred CCceEEEEEeeecchhhhhcccchhHHHHHHHHHHHHHHHHH--Hhc-CcEEEEecCcceEEECCCCCc
Confidence 347899999999999 77777 89899999999999999999 445 654434569999999765543
No 21
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=89.08 E-value=6 Score=40.28 Aligned_cols=165 Identities=11% Similarity=0.043 Sum_probs=109.7
Q ss_pred EEEEecCCcCcCCCCChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeecCCccchhhhcccchhhccCCCC
Q psy16155 68 VMFATLVESHDTAPASTLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEP 147 (306)
Q Consensus 68 vlF~DI~gft~l~~~~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~gl~~ 147 (306)
+....+-+|..++...+++-...+|.+...+-.-.. +.| +..-=++.+|.++++....
T Consensus 177 l~~i~vDNyDe~t~~~~d~~rs~inS~V~s~l~~~a-~~~-~if~rr~s~drf~~~~~~~-------------------- 234 (655)
T COG3887 177 LGIISVDNYDEVTQGLSDSDRSQINSFVTSFLEEWA-TEY-NIFLRRYSSDRFYAFTNYK-------------------- 234 (655)
T ss_pred EEEEEeccHHHHhcCCChhhHHHHHHHHHHHHHHHH-HHh-hhhheeecCCeEEEEecHH--------------------
Confidence 334445688888888666666667776666444331 556 7766679999999986422
Q ss_pred ccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCceEeeecccceEEEEEeCCCCcccccccchHHHHHHHHhcCC
Q psy16155 148 SVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGL 227 (306)
Q Consensus 148 ~~~~~~~~~~~~~a~~av~~a~~~~~~~~~~~~~~~~~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~~~a~ 227 (306)
......+-=..+++.+++.......++.+.||+..|. ....-.|+....+.++...-.
T Consensus 235 ------------~L~~l~~~kF~iLd~~RE~s~~~~ipLTLSiGvg~g~----------~~~~elg~vA~~~L~lAlgRG 292 (655)
T COG3887 235 ------------ILEKLEEDKFSILDEFREESSQKNIPLTLSIGVGYGE----------NNLIELGEVAQSNLDLALGRG 292 (655)
T ss_pred ------------HHHHHHHhhhHHHHHHHHHhhccCcceEEEEEeccCc----------ccHHHHHHHHHHhHHHHhccC
Confidence 2233344455667777777777777999999987774 234667888888888887777
Q ss_pred CCeEEEecccccccCcccCCCcceeeeeeeeeeeeeeecccccceEE-----------------------EeeeccCcee
Q psy16155 228 PNEIQVFGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLA-----------------------GVVGSQKPLY 284 (306)
Q Consensus 228 ~g~i~Is~~~~~l~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~g~~~~~~ 284 (306)
..||.|-+.+.+.. |+|=.+-|..= =++|.+.|.-
T Consensus 293 GDQVvIke~~~k~~----------------------fyGG~s~~~ekrTRvRaRvis~al~d~i~e~d~VfImGHk~pDm 350 (655)
T COG3887 293 GDQVVIKENNGKVR----------------------FYGGKSNPMEKRTRVRARVISTALSDIIKESDNVFIMGHKFPDM 350 (655)
T ss_pred CceEEEEcCCCcee----------------------eeCCCcchhHHhHHHHHHHHHHHHHHHHhhcCcEEEEccCCCCh
Confidence 77888877665521 11222211110 1679999999
Q ss_pred eeeccchhhhhhhh
Q psy16155 285 DIWGDVVNLASRMD 298 (306)
Q Consensus 285 ~~~g~~v~~a~~~~ 298 (306)
|-.|.++-++.--.
T Consensus 351 DalGsAig~~~~A~ 364 (655)
T COG3887 351 DALGSAIGMQKFAS 364 (655)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998765443
No 22
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=86.20 E-value=11 Score=40.27 Aligned_cols=126 Identities=12% Similarity=0.063 Sum_probs=83.1
Q ss_pred cEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeecCCccchhhhcccchhhcc
Q psy16155 65 SVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAAC 143 (306)
Q Consensus 65 ~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~ 143 (306)
...+.-..|-||.+.... ...+--.+...+-+.+.+.+ .+| ++..=++..|.|+++..
T Consensus 204 ~~v~g~i~iDNyde~~~~~~~~~~s~l~~~i~~~l~~~~--~~~-~~~~r~~~~dry~~~~~------------------ 262 (838)
T PRK14538 204 TLALAMITFDNLEESLIRYDLSEQSQIQGEYLSALSDFI--EPY-EGYLKQLIDDRFLLLIN------------------ 262 (838)
T ss_pred CcEEEEEEeeCHHHHhcccchHHHHHHHHHHHHHHHHHH--HhC-CEEEEEecCCcEEEEEE------------------
Confidence 334444556677776666 44444555566666677887 667 77666889999999873
Q ss_pred CCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCceEeeecccceEEEEEeCCCCcccccccchHHHHHHHH
Q psy16155 144 GLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMD 223 (306)
Q Consensus 144 gl~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~~~~~~~~~~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~ 223 (306)
........+--..+++.+++....+..++.+.||+..|. ..|.-.++-.+.|..|.
T Consensus 263 --------------~~~l~~~~~~kF~iLd~ir~~~~~~~~~vTLSiGig~g~----------~~~~e~~~~A~~aldlA 318 (838)
T PRK14538 263 --------------RQNLDKMIENKFSILDTIRNISHKYQLKVTLSMGIACWN----------LSYDKLATYSQNAIELA 318 (838)
T ss_pred --------------HHHHHHHHHhCCcHHHHHHHhhcCCCCceEEEEEEeCCC----------CCHHHHHHHHHHHHHHH
Confidence 233334444445677777777777777889999977762 34566667777777776
Q ss_pred hcCCCCeEEEec
Q psy16155 224 STGLPNEIQVFG 235 (306)
Q Consensus 224 ~~a~~g~i~Is~ 235 (306)
-.-...|+.|-.
T Consensus 319 lgRGGDQvvvk~ 330 (838)
T PRK14538 319 QKRGGDQAVVNI 330 (838)
T ss_pred hccCCCEEEEEc
Confidence 655566776654
No 23
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=86.16 E-value=16 Score=35.00 Aligned_cols=59 Identities=7% Similarity=0.002 Sum_probs=40.8
Q ss_pred eCcEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeec
Q psy16155 63 YDSVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACG 125 (306)
Q Consensus 63 ~~~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G 125 (306)
..+.++++.||.+|..+.+. +.+..=.+|..+-..+.+.+ .. +...-++-||.+.++..
T Consensus 234 ~~~~~ll~idId~Fk~INd~~Gh~~GD~lL~~vA~~L~~~l--~~--~d~laRlggdeFavll~ 293 (366)
T PRK10245 234 HRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITL--RG--SDVIGRFGGDEFAVIMS 293 (366)
T ss_pred CCCEEEEEEECCcchHHHHhhCchHHHHHHHHHHHHHHHhC--CC--CCEEEEEcCcEEEEEeC
Confidence 34688999999999999887 44444455666666666666 22 22334688999988763
No 24
>PRK11059 regulatory protein CsrD; Provisional
Probab=85.08 E-value=18 Score=37.17 Aligned_cols=58 Identities=10% Similarity=0.006 Sum_probs=40.1
Q ss_pred cEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEee
Q psy16155 65 SVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAAC 124 (306)
Q Consensus 65 ~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~ 124 (306)
..++++.||-+|..+-+. +....=.+|..+-..+...+ .++++....++-||.+.++.
T Consensus 259 ~~~ll~idid~fk~iNd~~Gh~~gD~~L~~va~~L~~~~--~~~~~~~~aR~ggdeFaill 317 (640)
T PRK11059 259 HGVVMLIRLPDFDLLQEEWGESQVEELLFELINLLSTFV--MRYPGALLARYSRSDFAVLL 317 (640)
T ss_pred cEEEEEEECchHHHHHHhcChHHHHHHHHHHHHHHHHHH--hcCCCCEEEEecCCEEEEEe
Confidence 578999999999999888 54444445666666666666 33323334568899998875
No 25
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=84.45 E-value=15 Score=35.05 Aligned_cols=112 Identities=10% Similarity=0.006 Sum_probs=63.5
Q ss_pred hccHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHhc-------cc--HHHHHHHHccCCCCcccccceeCcEEEEEEecC
Q psy16155 5 VKDVNPICLTFEHWRWEYLFLQL-PDPLFKFYVAGG-------LA--VLISELYLNVSRPYRELYYEQYDSVSVMFATLV 74 (306)
Q Consensus 5 ~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~lL~~~-------lP--~~v~~~l~~~~~~~~~~~~~~~~~vtvlF~DI~ 74 (306)
..|+..+...++.+..++++... .+++..++.... +| ....+.+..-.. ...+....++++.|+.
T Consensus 213 ~dEl~~L~~~~N~m~~~l~~~~~~l~~~~~~l~~~a~~D~lTgl~nr~~f~~~l~~~~~-----~~~~~~~~~l~~i~id 287 (407)
T PRK09966 213 IAEFHRFALDFNSLLDEMEEWQLRLQAKNAQLLRTALHDPLTGLANRAAFRSGINTLMN-----NSDARKTSALLFLDGD 287 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCccCCccHHHHHHHHHHHHH-----HhhcCCceEEEEEECc
Confidence 35788899999999998877644 222222222211 11 111222211100 0112335789999999
Q ss_pred CcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeec
Q psy16155 75 ESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACG 125 (306)
Q Consensus 75 gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G 125 (306)
+|..+-+. +....=.+|..+-..+.+.+ ... ...-+.-||.+.++..
T Consensus 288 ~f~~in~~~G~~~gd~~l~~~a~~L~~~~--~~~--~~~~R~~~deF~ill~ 335 (407)
T PRK09966 288 NFKYINDTWGHATGDRVLIEIAKRLAEFG--GLR--HKAYRLGGDEFAMVLY 335 (407)
T ss_pred cchHHHhhhchHHHHHHHHHHHHHHHHhC--CCC--CEEEEEccceEEEEEc
Confidence 99999877 44444455666666666665 222 2234578999988763
No 26
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=81.21 E-value=13 Score=33.93 Aligned_cols=61 Identities=13% Similarity=0.112 Sum_probs=43.9
Q ss_pred eCcEEEEEEecCCcCcCCCC--ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeec
Q psy16155 63 YDSVSVMFATLVESHDTAPA--STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACG 125 (306)
Q Consensus 63 ~~~vtvlF~DI~gft~l~~~--~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G 125 (306)
-..|+|.-.||.++|..... +|-+....+++++..+-+.+.. .+ ++.--=.-||.+|++|.
T Consensus 132 ~~~v~iaH~Di~~~T~~~td~~~~~dt~~~i~~~~~~l~~~~~~-~~-g~l~ff~GGDN~~~~~~ 194 (254)
T PRK02240 132 DGYVQIAHFDINDITGTYTDIENAFDTFLEIEQAYLALMRELRK-AH-DALSFFVGGDNFMAPCP 194 (254)
T ss_pred CCceEEEEEeeecccceeeccCchhHHHHHHHHHHHHHHHHHHH-hc-CcEEEEecCceEEEECC
Confidence 45899999999999998554 7777776677777776666632 14 54333356999999973
No 27
>PRK09894 diguanylate cyclase; Provisional
Probab=80.77 E-value=25 Score=31.79 Aligned_cols=57 Identities=5% Similarity=0.045 Sum_probs=40.4
Q ss_pred CcEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEee
Q psy16155 64 DSVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAAC 124 (306)
Q Consensus 64 ~~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~ 124 (306)
...++++.||.+|..+.+. +....=.+|..+-..+.+.+ ... ...-++-||.++++.
T Consensus 157 ~~~~l~~i~id~f~~in~~~G~~~gd~~L~~ia~~l~~~~--~~~--~~~~R~~g~~F~ill 214 (296)
T PRK09894 157 QNLYLALLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWT--RDY--ETVYRYGGEEFIICL 214 (296)
T ss_pred CcEEEEEEECccccHHHHccCcHHHHHHHHHHHHHHHHhC--CCC--CEEEEEcCCeEEEEe
Confidence 3588999999999999888 55555556667766676666 322 233457789888875
No 28
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=77.71 E-value=32 Score=27.04 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=42.4
Q ss_pred cEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeec
Q psy16155 65 SVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACG 125 (306)
Q Consensus 65 ~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G 125 (306)
..+++.++|.+|..+.+. +.+..-.++..+...+.+.+ ... ....+..+|.++++..
T Consensus 34 ~~~l~~i~i~~~~~~~~~~g~~~~~~~l~~i~~~l~~~~--~~~--~~~~r~~~~~f~ii~~ 91 (163)
T smart00267 34 PFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCL--RPG--DLLARLGGDEFALLLP 91 (163)
T ss_pred eEEEEEEEccccchhhhccCchhHHHHHHHHHHHHHHhc--CCC--CEEEEecCceEEEEec
Confidence 488999999999999888 66667777888888888877 322 2233466788887764
No 29
>PRK13561 putative diguanylate cyclase; Provisional
Probab=75.85 E-value=22 Score=36.43 Aligned_cols=108 Identities=11% Similarity=0.099 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhhccchH--HHHHHHhcccHHHHHHHHccCCCCcccccceeCcEEEEEEecCCcCcCCCC-
Q psy16155 6 KDVNPICLTFEHWRWEYLFLQLPDPL--FKFYVAGGLAVLISELYLNVSRPYRELYYEQYDSVSVMFATLVESHDTAPA- 82 (306)
Q Consensus 6 ~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~lL~~~lP~~v~~~l~~~~~~~~~~~~~~~~~vtvlF~DI~gft~l~~~- 82 (306)
.|+..+++.++.+..++++..++-++ ...-+....-+.-..+..+... .+....++++.||.+|..+.+.
T Consensus 204 dEl~~L~~~~n~~~~~l~~~~~~l~~~a~~D~lTgL~NR~~f~~~l~~~l-------~~~~~~~l~~idld~f~~in~~~ 276 (651)
T PRK13561 204 DEIGMLVRSYNLNQQLLQRQYEEQSRNATRFPVSDLPNKALLMALLEQVV-------ARKQTTALMIITCETLRDTAGVL 276 (651)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcCCccHHHHHHHHHHHH-------hcCCCeEEEEEECCchHHHHHhh
Confidence 47788888888888777666552111 1111111112221111111100 0234688999999999998877
Q ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEee
Q psy16155 83 STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAAC 124 (306)
Q Consensus 83 ~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~ 124 (306)
+....=.+|..+-..+.+.+ .. +....+..||.+.++.
T Consensus 277 G~~~gD~lL~~ia~~L~~~~--~~--~~~~aRl~gdeF~ill 314 (651)
T PRK13561 277 KEAQREILLLTLVEKLKSVL--SP--RMVLAQISGYDFAIIA 314 (651)
T ss_pred ChHHHHHHHHHHHHHHHHhC--CC--CcEEEEEeCCEEEEEE
Confidence 55544455666666676666 22 2334568899998886
No 30
>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]
Probab=72.57 E-value=52 Score=27.35 Aligned_cols=59 Identities=8% Similarity=0.108 Sum_probs=41.5
Q ss_pred eCcEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeec
Q psy16155 63 YDSVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACG 125 (306)
Q Consensus 63 ~~~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G 125 (306)
....++++.||-+|..+-+. +...--.+|..+-..+...+ ... . ..-++-||.+.++..
T Consensus 49 ~~~~~l~~iDiD~Fk~iND~~Gh~~GD~vL~~va~~L~~~~--~~~-~-~~~R~gGdEF~i~l~ 108 (181)
T COG2199 49 GEPLALLLLDLDHFKQINDTYGHAAGDEVLREVARRLRSNL--REG-D-LVARLGGDEFAVLLP 108 (181)
T ss_pred CCCeEEEEEeCcCCccccccccchHHHHHHHHHHHHHHHhc--CCC-C-EEEEeccceeEEEeC
Confidence 35689999999999997766 44444455666666677776 322 2 455688999998864
No 31
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=72.12 E-value=23 Score=36.29 Aligned_cols=111 Identities=7% Similarity=-0.002 Sum_probs=60.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHhcccHHHH-HHHHccCCCCcccccceeCcEEEEEEecCCcCcCCCC
Q psy16155 6 KDVNPICLTFEHWRWEYLFLQL--PDPLFKFYVAGGLAVLIS-ELYLNVSRPYRELYYEQYDSVSVMFATLVESHDTAPA 82 (306)
Q Consensus 6 ~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~lL~~~lP~~v~-~~l~~~~~~~~~~~~~~~~~vtvlF~DI~gft~l~~~ 82 (306)
.|+..+++.++.+...+++..+ ++.....-+..+.-+.-. +.+...-. ........++++.||.+|..+-+.
T Consensus 205 ~El~~L~~~~n~~~~~l~~~~~~l~~~~~~D~lTgL~NR~~f~~~l~~~l~-----~~~~~~~~~l~~idid~f~~in~~ 279 (660)
T PRK11829 205 DELGVLVRNYNRNQQLLADAYADMGRISHRFPVTELPNRSLFISLLEKEIA-----SSTRTDHFHLLVIGIETLQEVSGA 279 (660)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCchhHHHHHHHHHHHHH-----hhccCCCEEEEEEECCcHHHHHHh
Confidence 4677888888888777666544 111111112222222111 11111100 011123578999999999999887
Q ss_pred -ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeec
Q psy16155 83 -STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACG 125 (306)
Q Consensus 83 -~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G 125 (306)
+.+..=.+|..+-..+.+.+ .. +...-+..||.+.++..
T Consensus 280 ~G~~~gD~lL~~va~~l~~~~--~~--~~~~aRl~gdeF~vl~~ 319 (660)
T PRK11829 280 MSEAQHQQLLLTIVQRIEQCI--DD--SDLLAQLSKTEFAVLAR 319 (660)
T ss_pred hChHHHHHHHHHHHHHHHHhC--CC--CcEEEEEeCCEEEEEEc
Confidence 55444455666666666665 21 22344688999988763
No 32
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=62.02 E-value=1.8e+02 Score=29.12 Aligned_cols=58 Identities=12% Similarity=0.026 Sum_probs=41.0
Q ss_pred CcEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeec
Q psy16155 64 DSVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACG 125 (306)
Q Consensus 64 ~~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G 125 (306)
...+++++||.+|..+-+. +.+.-=.+|..+-..+...+ .. ....-+.-||.++++..
T Consensus 428 ~~~~l~~idid~fk~iNd~~G~~~GD~~L~~~a~~l~~~~--~~--~~~~~R~ggdeF~ill~ 486 (570)
T PRK15426 428 QPFSVIQLDLDHFKSINDRFGHQAGDRVLSHAAGLISSSL--RA--QDVAGRVGGEEFCVVLP 486 (570)
T ss_pred CcEEEEEEECcccCHhhHhhChHHHHHHHHHHHHHHHHhC--CC--CCEEEeecCcEEEEEeC
Confidence 4588999999999999888 55544455666666666666 32 22334688999988753
No 33
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=58.42 E-value=1.1e+02 Score=30.20 Aligned_cols=55 Identities=7% Similarity=0.016 Sum_probs=34.1
Q ss_pred eCcEEEEEEecCCcCcCCCC----ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEee
Q psy16155 63 YDSVSVMFATLVESHDTAPA----STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAAC 124 (306)
Q Consensus 63 ~~~vtvlF~DI~gft~l~~~----~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~ 124 (306)
-...+++++||-.|..+-.. -.++++ ..+-..+.+.+ +. .-..-++-|+.++++.
T Consensus 299 ~~pls~~m~DID~FK~iNDt~GH~~GDevL---r~vA~~L~~~v-r~---~Dl~aRyGGEEF~vvl 357 (435)
T COG3706 299 GRPLSLLMLDIDDFKEINDTYGHDVGDEVL---RQVARRLRQTV-RG---LDLVARYGGEEFAVVL 357 (435)
T ss_pred CCCeeEEEEecccccccccccCCccHHHHH---HHHHHHHHhhc-cc---cccceecCCeeEEEEe
Confidence 34789999999999999877 334443 33333333333 11 2233457788888875
No 34
>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function.
Probab=56.44 E-value=1e+02 Score=24.66 Aligned_cols=87 Identities=11% Similarity=0.001 Sum_probs=56.0
Q ss_pred cEEEEeEeCcEEEEeecCCccchhhhcccchhhccCCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhc------
Q psy16155 109 RVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAAN------ 182 (306)
Q Consensus 109 ~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~gl~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~~~~~~~------ 182 (306)
+...-|..||+++-..--.... ..-..++..|-.+..+..+++....
T Consensus 14 ~l~lseiEGDAilFy~~~~~~~---------------------------~~v~~q~~~M~~aF~~~~~~~~~~~~C~C~a 66 (116)
T PF10851_consen 14 GLKLSEIEGDAILFYKYGKDTS---------------------------VEVCRQCERMRRAFHQRREQLKKDRICQCGA 66 (116)
T ss_pred CcEEEEecccEEEEEcCCCCcc---------------------------HHHHHHHHHHHHHHHHHHHHHhhcccCCchh
Confidence 7777788899988763211111 1123344444444444444444333
Q ss_pred ---CCCceEeeecccceEEEEEeCCCCcccccccchHHHHHHHHhc
Q psy16155 183 ---NHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDST 225 (306)
Q Consensus 183 ---~~~l~vrIGi~~G~v~~Gv~G~~~~~y~v~G~~Vn~A~rm~~~ 225 (306)
...+.+++-.|.|++.--.+|... -++|..|-.|.||-..
T Consensus 67 C~~~~~LsLKfV~H~Ge~~~~~Vk~~~---kL~G~dVI~aHrlLKN 109 (116)
T PF10851_consen 67 CAQLINLSLKFVAHYGEVAQQKVKRFC---KLAGKDVIEAHRLLKN 109 (116)
T ss_pred hhhhhcceEEEEEEeeeeeeeeecccc---hhcCchhhHhHHHHcC
Confidence 128899999999999888887632 5889999999999754
No 35
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=54.03 E-value=1.5e+02 Score=27.08 Aligned_cols=55 Identities=4% Similarity=-0.092 Sum_probs=41.5
Q ss_pred EEEEecCCcCcCCCC-ChH---HHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeec
Q psy16155 68 VMFATLVESHDTAPA-STL---VSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACG 125 (306)
Q Consensus 68 vlF~DI~gft~l~~~-~~~---~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G 125 (306)
|.-..|.||-++++. .|. ++-.+=+++|..+.+.+ .++ ++...-+-||.+++++.
T Consensus 4 it~iqid~YgpWT~t~~prRE~dlQ~lQsrLya~L~~~~--~~~-ggl~Ff~RgDN~iavtN 62 (254)
T PRK02240 4 ITLIQIDNYGPWTVTPNPRRESDLQALQSRLYADLAQQF--GAR-DGYVFFTRFDNMIAVTN 62 (254)
T ss_pred EEEEEecCCCcCcCCCCCccHHHHHHHHHHHHHHHHHHH--HhC-CCEEEeccCceEEEEcC
Confidence 345678899999888 442 34455678888888888 455 88888889999999854
No 36
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=50.62 E-value=1.2e+02 Score=23.51 Aligned_cols=56 Identities=7% Similarity=0.113 Sum_probs=40.8
Q ss_pred cEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEee
Q psy16155 65 SVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAAC 124 (306)
Q Consensus 65 ~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~ 124 (306)
..+++..+|.+|..+... +....-.+|..+...+.+.+ ... ......-++.++++.
T Consensus 31 ~~~l~~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~--~~~--~~~~~~~~~~f~~l~ 87 (158)
T cd01949 31 PLALLLIDIDHFKQINDTYGHAAGDEVLKEVAERLRSSL--RES--DLVARLGGDEFAILL 87 (158)
T ss_pred eEEEEEEEchhhhHHHHhhChHhHHHHHHHHHHHHHHhC--CCC--CEEEEecCCeEEEEe
Confidence 578999999999999888 66767777888888888877 322 223335567777765
No 37
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=50.08 E-value=92 Score=24.44 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=41.7
Q ss_pred CcEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeec
Q psy16155 64 DSVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACG 125 (306)
Q Consensus 64 ~~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G 125 (306)
...+++..+|.++..+.+. +....-.+|..+-..+...+ .. .....++-+|.++++.-
T Consensus 31 ~~~~l~~i~i~~~~~l~~~~G~~~~~~~l~~i~~~L~~~~--~~--~~~~~r~~~~~f~il~~ 89 (161)
T PF00990_consen 31 EPFALVLIDIDNLDELNEKYGYEVGDEILRQIAKRLKKQL--RE--SDILARLGDDEFAILLP 89 (161)
T ss_dssp SEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CT--TSEEEEEETTEEEEEEE
T ss_pred CCceEEEEeccccccccccccccccccccccccccccccc--cc--ccccccccchheeeccc
Confidence 4789999999999998776 55555566777666666666 21 33445678999988753
No 38
>TIGR02577 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 family. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.
Probab=46.92 E-value=1.5e+02 Score=29.70 Aligned_cols=116 Identities=13% Similarity=0.012 Sum_probs=71.8
Q ss_pred eCcEEEEEEecCCcCcCCCC-------------------Ch---HHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEE
Q psy16155 63 YDSVSVMFATLVESHDTAPA-------------------ST---LVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTY 120 (306)
Q Consensus 63 ~~~vtvlF~DI~gft~l~~~-------------------~~---~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ 120 (306)
..-.+++.+|--+.-.+.+. .| ..+-+.|+.++......+ .++ ++..|=.-||.+
T Consensus 341 ~~y~Ail~aDGD~mG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~aL~~f~~~~~~~v--~~~-~g~~VYaGGDDv 417 (482)
T TIGR02577 341 RPYYAILKADGDRMGKLLRGEIRPEEKERIHPKKVKNLTTPAAHVAFSRALAEFSLKAVKIV--VNE-HGELVYAGGDDV 417 (482)
T ss_pred CceEEEEEccccchHHHHhCCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHh--hhh-CeEEEEEccCcE
Confidence 44689999997766555443 12 234466777777666666 344 677777889999
Q ss_pred EEeecCCccchhhhcccchhhccCCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhc---CCCceEeeecccceE
Q psy16155 121 LAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAAN---NHTFKLRIGIAHGAV 197 (306)
Q Consensus 121 ma~~G~~~~~kik~~G~ty~aa~gl~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~~~~~~~---~~~l~vrIGi~~G~v 197 (306)
+++.. ...+.++|..+.+.+....... ...+.+..||....
T Consensus 418 lai~p-----------------------------------~~~al~~a~~l~~~F~~~~~~~~~~~~~~T~SaGI~iah- 461 (482)
T TIGR02577 418 LALLP-----------------------------------VDTALDVAKELRKEFRESLEKSLGGERGPTMSAGLLIVH- 461 (482)
T ss_pred EEEcc-----------------------------------HHHHHHHHHHHHHHHHHHhhcccccCCCceEEEEEEEeC-
Confidence 99862 2346788888888877766432 22344444422211
Q ss_pred EEEEeCCCCcccccccchHHHHHHHHhcCC
Q psy16155 198 TAGVVGSQKPLYDIWGDVVNLASRMDSTGL 227 (306)
Q Consensus 198 ~~Gv~G~~~~~y~v~G~~Vn~A~rm~~~a~ 227 (306)
.-..+..+++.|.+++..|+
T Consensus 462 ----------~k~Pl~~~~~~a~ell~~AK 481 (482)
T TIGR02577 462 ----------HKEPLYDALELARRLLKRAK 481 (482)
T ss_pred ----------CCCcHHHHHHHHHHHHHHhc
Confidence 11456677788888876543
No 39
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=40.64 E-value=3.1e+02 Score=27.39 Aligned_cols=100 Identities=16% Similarity=0.067 Sum_probs=66.9
Q ss_pred EEEEe-cCCcCcCCCC--ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeecCCccchhhhcccchhhccC
Q psy16155 68 VMFAT-LVESHDTAPA--STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACG 144 (306)
Q Consensus 68 vlF~D-I~gft~l~~~--~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~g 144 (306)
|..|| +-|=|.-++. .+..+-+++.++-..|+-.-....++++.-++..||.+.=+-|-...-.-...+..|-..|+
T Consensus 361 vW~cDPMHGNT~~t~~G~KTR~f~~Il~Ev~~ff~vh~~~Gt~~GGlHLElTG~dVTEC~Gg~~~i~e~dL~~rY~T~CD 440 (474)
T PLN02291 361 TWVSDPMHGNTIKAPSGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCD 440 (474)
T ss_pred EEeecCCCCCceeCCCCccCCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCCCcceeCCCccccCcchhhhccccCCC
Confidence 66666 6676766554 66667777777777666555557777999999999998877554322211223455777777
Q ss_pred CCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy16155 145 LEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFN 179 (306)
Q Consensus 145 l~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~~~~ 179 (306)
+.-.+.+++++|..+.+.++...
T Consensus 441 ------------PRLN~~QsLelaf~va~~l~~~~ 463 (474)
T PLN02291 441 ------------PRLNASQSLELAFIIAERLRKRR 463 (474)
T ss_pred ------------CCCCHHHHHHHHHHHHHHHHHhh
Confidence 44556788888888777775543
No 40
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=36.93 E-value=3.7e+02 Score=26.68 Aligned_cols=97 Identities=14% Similarity=0.043 Sum_probs=63.6
Q ss_pred EEEEe-cCCcCcCCCC--ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeecCCccchhhhcccchhhccC
Q psy16155 68 VMFAT-LVESHDTAPA--STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACG 144 (306)
Q Consensus 68 vlF~D-I~gft~l~~~--~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G~~~~~kik~~G~ty~aa~g 144 (306)
|..|| +-|=|.-++. .+..+-+++.++-..|+-.-....++++.-++..||.+.=+-|-...-.-......|-.+|+
T Consensus 341 vW~cDPMHGNT~~t~~G~KTR~f~~Il~Ev~~ff~vh~~~Gt~~GGlHlE~Tg~dVTEC~Gg~~~i~e~dL~~rY~T~CD 420 (443)
T TIGR01358 341 VWVCDPMHGNTEEAASGYKTRRFDDIRSEVKGFFEVHRAEGTHPGGVHLELTGEDVTECLGGAREITETDLASRYETACD 420 (443)
T ss_pred EEeecCCCCCceeCCCCccCCcHHHHHHHHHHHHHHHHHcCCCCCeEEEEecCCCcceeCCCccccCcchhhhccccCCC
Confidence 56666 6666666554 66667777777777666555557777999999999998876554322111223345777776
Q ss_pred CCCccccCCCCCCchHHHHHHHHHHHHHHHHH
Q psy16155 145 LEPSVRSASGEDNTHPLVMMTCFAANMLRVLR 176 (306)
Q Consensus 145 l~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~ 176 (306)
+.-.+.+++++|..+.+.++
T Consensus 421 ------------PRLN~~QsLelaf~va~~l~ 440 (443)
T TIGR01358 421 ------------PRLNAEQSLELAFLVAEKLR 440 (443)
T ss_pred ------------CCCCHHHHHHHHHHHHHHHh
Confidence 44556677888777766554
No 41
>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.
Probab=35.12 E-value=4.3e+02 Score=25.65 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=26.2
Q ss_pred CceEeeeccc--------ceEEEEEeCC-CCcc-cccccchHHHHHHHHhc
Q psy16155 185 TFKLRIGIAH--------GAVTAGVVGS-QKPL-YDIWGDVVNLASRMDST 225 (306)
Q Consensus 185 ~l~vrIGi~~--------G~v~~Gv~G~-~~~~-y~v~G~~Vn~A~rm~~~ 225 (306)
.+.+|+|+-. .++-++-... +... .-..|+.+..|.+....
T Consensus 106 ~l~LRvg~VPV~~Ir~~G~dvrvAr~~~S~~~~~amf~GgGL~~AE~~mK~ 156 (373)
T PF11294_consen 106 DLELRVGLVPVSDIRAEGLDVRVARFAASPNVSYAMFSGGGLAWAEALMKA 156 (373)
T ss_pred CCceeEeeeEHHHHHhCCCeEEEEEEccCCCceEEEEecCcHHHHHHHHhc
Confidence 5777887432 3455555544 3333 34789999999998873
No 42
>PRK09776 putative diguanylate cyclase; Provisional
Probab=26.98 E-value=4.7e+02 Score=28.36 Aligned_cols=58 Identities=9% Similarity=0.044 Sum_probs=38.7
Q ss_pred eCcEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEee
Q psy16155 63 YDSVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAAC 124 (306)
Q Consensus 63 ~~~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~ 124 (306)
....++++.||.+|..+-+. +...-=.+|..+-..+.+.+ .. +-..-+.-||.+.++.
T Consensus 694 ~~~~~l~~idid~fk~in~~~G~~~gd~~L~~~a~~l~~~~--~~--~~~~~R~~gdeF~vl~ 752 (1092)
T PRK09776 694 HQRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSML--RS--SDVLARLGGDEFGLLL 752 (1092)
T ss_pred CCcEEEEEEECcchHHHHHhhChhhHHHHHHHHHHHHHHhC--CC--cCEEEEecCcEEEEEe
Confidence 34689999999999999877 44444344555555555555 21 2234468899998875
No 43
>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Probab=25.67 E-value=5.3e+02 Score=26.93 Aligned_cols=117 Identities=8% Similarity=0.003 Sum_probs=71.2
Q ss_pred eCcEEEEEEecCCcCcCCCC---Ch------HHHHHHHHHHHHH-HHHHHhcC-CCCcEEEEeEeCcEEEEeecCCccch
Q psy16155 63 YDSVSVMFATLVESHDTAPA---ST------LVSLEILNQIICD-FDKILFVP-KASRVEKIKVAGWTYLAACGASRVEK 131 (306)
Q Consensus 63 ~~~vtvlF~DI~gft~l~~~---~~------~~~v~~Ln~~~~~-~d~~i~~~-~~~~~~~ik~~GD~~ma~~G~~~~~k 131 (306)
...++|+-+|.-+.-.+-.. .+ ..+-+.|+.+|+. +..++..+ +.+.+..|=.-||.++++..
T Consensus 520 ~~~lavl~~D~DnlG~~f~~g~~~~~~~s~~~~lS~~l~~fF~~~v~~i~~~~~~~~~~~~VYaGGDDv~~ig~------ 593 (648)
T TIGR02578 520 HKKLGVLKMDVDNLGEIFASGLKRPTRISRLATLSRQLELFFKLYLLHLAEDKRNKRNLYVVYSGGDDLFLIGP------ 593 (648)
T ss_pred CceEEEEEccccCHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCEEEEEEccccEEEEcc------
Confidence 35789999999886665533 11 2334556666665 44445222 23367777778999998752
Q ss_pred hhhcccchhhccCCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCceEeeecccceEEEEEeCCCCccccc
Q psy16155 132 IKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDI 211 (306)
Q Consensus 132 ik~~G~ty~aa~gl~~~~~~~~~~~~~~~a~~av~~a~~~~~~~~~~~~~~~~~l~vrIGi~~G~v~~Gv~G~~~~~y~v 211 (306)
...+.++|.++++.+.+.... ..+.+..||... .+. ..
T Consensus 594 -----------------------------~~~~l~~A~~i~~~F~~~~~~--~~~TlSaGi~i~----------~~k-~P 631 (648)
T TIGR02578 594 -----------------------------WNAVLELASDIREYFEKFTCR--DKITISAGVVVV----------SPK-YP 631 (648)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHhCC--CCeeEEEEEEEC----------CCC-CC
Confidence 235678888888888876532 345555553322 111 34
Q ss_pred ccchHHHHHHHHhcCC
Q psy16155 212 WGDVVNLASRMDSTGL 227 (306)
Q Consensus 212 ~G~~Vn~A~rm~~~a~ 227 (306)
+..+.++|.++++.|+
T Consensus 632 l~~~~~~aee~l~~AK 647 (648)
T TIGR02578 632 VYRAARIAEELLEAAK 647 (648)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5667777877776553
No 44
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.
Probab=25.45 E-value=3.3e+02 Score=21.26 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=39.5
Q ss_pred cEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEee
Q psy16155 65 SVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAAC 124 (306)
Q Consensus 65 ~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~ 124 (306)
..+++..+|.+|..+... +....-.+|..+...+.+.+ .. +....+.-+|.++++.
T Consensus 33 ~~~l~~i~i~~~~~i~~~~G~~~~~~ll~~~a~~l~~~~--~~--~~~i~r~~~~~f~il~ 89 (165)
T TIGR00254 33 SFSVLMIDIDNFKKINDTLGHDVGDEVLREVARILQSSV--RG--SDVVGRYGGEEFVVIL 89 (165)
T ss_pred ceEEEEEeccchhHHHHhhChhhHHHHHHHHHHHHHHhc--Cc--CCEEEEecCCeEEEEe
Confidence 578999999999999877 55555566777777777766 22 2334456778777775
No 45
>PRK10060 RNase II stability modulator; Provisional
Probab=22.10 E-value=3.3e+02 Score=28.19 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=38.6
Q ss_pred CcEEEEEEecCCcCcCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeEeCcEEEEeec
Q psy16155 64 DSVSVMFATLVESHDTAPA-STLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLAACG 125 (306)
Q Consensus 64 ~~vtvlF~DI~gft~l~~~-~~~~~v~~Ln~~~~~~d~~i~~~~~~~~~~ik~~GD~~ma~~G 125 (306)
...++++.|+.+|..+-+. +...-=.+|..+-..+...+ .. +...-+.-||.+.++..
T Consensus 265 ~~~~ll~idld~fk~iNd~~G~~~gD~lL~~va~~L~~~~--~~--~d~vaRlggdeF~ill~ 323 (663)
T PRK10060 265 NQVGIVYLDLDNFKKVNDAYGHMFGDQLLQDVSLAILSCL--EE--DQTLARLGGDEFLVLAS 323 (663)
T ss_pred CcEEEEEEECcchhHHHHhhCcHHHHHHHHHHHHHHHHhC--CC--CCEEEEEcCCEEEEEEc
Confidence 4678999999999987666 44433345666666666666 22 22344578999988763
Done!