RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16155
(306 letters)
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 115 bits (291), Expect = 2e-31
Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 35/179 (19%)
Query: 58 LYYEQYDSVSVMFATLVESHDTAPAST---LVSLEILNQIICDFDKILFVPKASRVEKIK 114
+Y + YD+V+++FA +V + + LV L LN + FD++
Sbjct: 1 VYAQSYDNVTILFADIVGFTALSSRHSPEELVRL--LNDLYTRFDEL------------- 45
Query: 115 VAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRV 174
V K+K G Y+AA GL E + + A +ML
Sbjct: 46 ---------LDKHGVYKVKTIGDAYMAASGL--------PEPSPAHAQTLAEMALDMLEA 88
Query: 175 LRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQV 233
++ N + ++R+GI G V AGV+G+++P YD+WGD VNLASRM+STG+P +I V
Sbjct: 89 IKSVNIHSFEGLRVRVGIHTGPVVAGVIGARRPRYDVWGDTVNLASRMESTGVPGKIHV 147
Score = 60.3 bits (147), Expect = 5e-11
Identities = 22/34 (64%), Positives = 31/34 (91%)
Query: 273 LAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
+AGV+G+++P YD+WGD VNLASRM+STG+P +I
Sbjct: 112 VAGVIGARRPRYDVWGDTVNLASRMESTGVPGKI 145
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 104 bits (262), Expect = 2e-27
Identities = 51/173 (29%), Positives = 70/173 (40%), Gaps = 37/173 (21%)
Query: 66 VSVMFATLVESH---DTAPASTLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLA 122
V+V+FA +V + LV E+LN+ FD+I+
Sbjct: 2 VTVLFADIVGFTALSERLGPEELV--ELLNEYFSAFDEIIE------------------- 40
Query: 123 ACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNA-- 180
K G +A GL G H + A M L + NA
Sbjct: 41 ---RHGGTVDKTIGDAVMAVFGLP-------GAHEDHAERAVRA-ALEMQEALAELNAER 89
Query: 181 ANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQV 233
+LRIGI G V AGVVGS++P Y + GD VNLA+R++S P +I V
Sbjct: 90 EGGPPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILV 142
Score = 56.8 bits (138), Expect = 6e-10
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 273 LAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
+AGVVGS++P Y + GD VNLA+R++S P +I
Sbjct: 107 VAGVVGSERPEYTVIGDTVNLAARLESLAKPGQI 140
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 94.6 bits (236), Expect = 2e-23
Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 35/177 (19%)
Query: 61 EQYDSVSVMFATLVESHDTAPAST---LVSLEILNQIICDFDKILFVPKASRVEKIKVAG 117
E YD+V+++F+ +V ST +V+L LN + FD+I
Sbjct: 32 ESYDNVTILFSDIVGFTSLCSTSTPEQVVNL--LNDLYSRFDQI---------------- 73
Query: 118 WTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRK 177
K+K G Y+ A GL D+ + A +M+ L+
Sbjct: 74 ------IDRHGGYKVKTIGDAYMVASGLPEEA----LVDHAELIADE---ALDMVEELKT 120
Query: 178 FNAANNHT-FKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQV 233
+ ++RIGI G V AGVVG + P Y ++GD VNLASRM+S G P +IQV
Sbjct: 121 VLVQHREEGLRVRIGIHTGPVVAGVVGIRMPRYCLFGDTVNLASRMESAGDPGQIQV 177
Score = 57.7 bits (140), Expect = 5e-10
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 273 LAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
+AGVVG + P Y ++GD VNLASRM+S G P +I
Sbjct: 142 VAGVVGIRMPRYCLFGDTVNLASRMESAGDPGQI 175
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be divided
into two major groups; the mononucleotidyl cyclases
(MNC's) and the diguanylate cyclases (DGC's). The
MNC's, which include the adenylate cyclases (AC's) and
the guanylate cyclases (GC's), have a conserved cyclase
homology domain (CHD), while the DGC's have a conserved
GGDEF domain, named after a conserved motif within this
subgroup. Their products, cyclic guanylyl and adenylyl
nucleotides, are second messengers that play important
roles in eukaryotic signal transduction and prokaryotic
sensory pathways.
Length = 133
Score = 83.2 bits (206), Expect = 9e-20
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 37/168 (22%)
Query: 66 VSVMFATLVESHDTAPASTLVSL-EILNQIICDFDKILFVPKASRVEKIKVAGWTYLAAC 124
V+++FA +V A A E+LN++ FD
Sbjct: 2 VTILFADIVGFTSLADALGPDEGDELLNELAGRFDS----------------------LI 39
Query: 125 GASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAANNH 184
S KIK G ++ GL HP + A +M + N + +
Sbjct: 40 RRSGDLKIKTIGDEFMVVSGL------------DHPAAAVAF-AEDMREAVSALNQSEGN 86
Query: 185 TFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQ 232
++RIGI G V GV+GS +P YD+WG +VNLASRM+S ++
Sbjct: 87 PVRVRIGIHTGPVVVGVIGS-RPQYDVWGALVNLASRMESQAKAGQVL 133
Score = 43.1 bits (102), Expect = 2e-05
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 274 AGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
GV+GS +P YD+WG +VNLASRM+S ++
Sbjct: 101 VGVIGS-RPQYDVWGALVNLASRMESQAKAGQV 132
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 54.5 bits (131), Expect = 8e-09
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 15/107 (14%)
Query: 129 VEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAANNHTFKL 188
+K G +LA G PS + C L + + ++
Sbjct: 89 GRVVKFIGDGFLAVFGR-PSPLED----------AVACALDLQLALRNPLARLRRESLRV 137
Query: 189 RIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQVFG 235
RIGI G V G G Y + G VN A+R++S P ++ +
Sbjct: 138 RIGIHTGEVVVGNTGG----YTVVGSAVNQAARLESLAKPGQVLLSE 180
Score = 29.0 bits (65), Expect = 2.9
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 273 LAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
+ G G Y + G VN A+R++S P ++
Sbjct: 147 VVGNTGG----YTVVGSAVNQAARLESLAKPGQV 176
>gnl|CDD|214444 MTH00165, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 573
Score = 37.4 bits (88), Expect = 0.007
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFF 272
FFF FF FF +F
Sbjct: 3 MCLISFFFLFFLSLILFFLGLYFLL 27
Score = 37.4 bits (88), Expect = 0.008
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
FFF FF FF +F
Sbjct: 5 LISFFFLFFLSLILFFLGLYFLLN 28
Score = 37.4 bits (88), Expect = 0.008
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 244 IHLPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
+ + FFF FF FF +F
Sbjct: 1 MSMCLISFFFLFFLSLILFFLGLYFLLNDY 30
Score = 36.3 bits (85), Expect = 0.016
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
F FF FF +F + F+
Sbjct: 10 FLFFLSLILFFLGLYFLLNDYSLFI 34
Score = 36.3 bits (85), Expect = 0.018
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
FFF FF FF +F + L
Sbjct: 8 FFFLFFLSLILFFLGLYFLLNDYSL 32
Score = 35.1 bits (82), Expect = 0.041
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
FF FF FF +F +
Sbjct: 9 FFLFFLSLILFFLGLYFLLNDYSLF 33
Score = 29.7 bits (68), Expect = 2.2
Identities = 4/39 (10%), Positives = 8/39 (20%)
Query: 235 GFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
G Y L ++ + F +
Sbjct: 534 GLYNFLKKLSKLIQWLQNNNLKIYLLSFLLWMIILLLLF 572
Score = 29.3 bits (67), Expect = 2.7
Identities = 2/29 (6%), Positives = 5/29 (17%)
Query: 240 FGDNIHLPKFFFFFFFFFFFFFFFFFFFF 268
+ + F + F
Sbjct: 545 LIQWLQNNNLKIYLLSFLLWMIILLLLFL 573
Score = 29.3 bits (67), Expect = 3.1
Identities = 3/26 (11%), Positives = 5/26 (19%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFL 273
+ F + FL
Sbjct: 548 WLQNNNLKIYLLSFLLWMIILLLLFL 573
Score = 29.3 bits (67), Expect = 3.1
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 254 FFFFFFFFFFFFFFFFFFFLAGV 276
FFF FF F G+
Sbjct: 1 MSMCLISFFFLFFLSLILFFLGL 23
Score = 29.0 bits (66), Expect = 4.0
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
FF +F + F + F L
Sbjct: 17 ILFFLGLYFLLNDYSLFIEWELFSL 41
>gnl|CDD|165783 PLN00218, PLN00218, predicted protein; Provisional.
Length = 151
Score = 33.8 bits (77), Expect = 0.043
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 245 HLPKF-FFFFFFFFFFFFFFFFFFFFFFFLA 274
+ P F +FF FFFFFF+ F FFFFLA
Sbjct: 9 YFPYFRYFFLFFFFFFWRESSLVFLFFFFLA 39
Score = 28.8 bits (64), Expect = 2.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
F FFFFFF+ F FFFF F
Sbjct: 17 FLFFFFFFWRESSLVFLFFFFLAF 40
>gnl|CDD|177159 MTH00097, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 121
Score = 32.2 bits (74), Expect = 0.092
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
FF F FFFFFF+FF +FF L
Sbjct: 54 FFSLFLSMFFFFFFYFFKVYFFSNL 78
Score = 31.8 bits (73), Expect = 0.15
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLY 284
+ FF F FFFFFF+FF +F + + + LY
Sbjct: 50 PYLVFFSLFLSMFFFFFFYFFKVYFFSNLSLNVFELY 86
Score = 31.0 bits (71), Expect = 0.25
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 243 NIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVG 278
+ L K + FF F FFFFFF+FF + +
Sbjct: 44 SFKLKKPYLVFFSLFLSMFFFFFFYFFKVYFFSNLS 79
>gnl|CDD|235692 PRK06076, PRK06076, NADH:ubiquinone oxidoreductase subunit H;
Provisional.
Length = 322
Score = 33.6 bits (78), Expect = 0.10
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 235 GFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFF 266
G+ PPF +P +F FF F F +
Sbjct: 257 GWLPPFPLGGGIPGAIWFVLKVAFFVFLFIWL 288
>gnl|CDD|214442 MTH00160, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 335
Score = 32.9 bits (76), Expect = 0.20
Identities = 7/31 (22%), Positives = 7/31 (22%)
Query: 243 NIHLPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
KF F F F F L
Sbjct: 305 KKKKNKFSLILNFLSFISLFGLILSSLLFLL 335
Score = 29.8 bits (68), Expect = 1.7
Identities = 6/31 (19%), Positives = 7/31 (22%)
Query: 243 NIHLPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
N+ K F F F F
Sbjct: 303 NLKKKKNKFSLILNFLSFISLFGLILSSLLF 333
>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 403
Score = 32.6 bits (75), Expect = 0.23
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
FFF F FF F FF F F
Sbjct: 1 LSLLFFFSPFLFFLFLMFFSFLMF 24
Score = 32.2 bits (74), Expect = 0.36
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
FFF F FF F FF F F
Sbjct: 2 SLLFFFSPFLFFLFLMFFSFLMFN 25
Score = 31.8 bits (73), Expect = 0.39
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFFL 273
FFF F FF F FF F
Sbjct: 1 LSLLFFFSPFLFFLFLMFFSFLMF 24
Score = 31.8 bits (73), Expect = 0.42
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLA 274
FFF F FF F FF F F +
Sbjct: 3 LLFFFSPFLFFLFLMFFSFLMFNNYS 28
Score = 30.3 bits (69), Expect = 1.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFLAGV 276
FFF F FF F FF F F + +G+
Sbjct: 4 LFFFSPFLFFLFLMFFSFLMFNNYSWSGL 32
Score = 28.7 bits (65), Expect = 3.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
F F FFF FF+F F++ FL
Sbjct: 341 FMKNKFSFFFIFFYFLVSFYYSLFL 365
Score = 28.3 bits (64), Expect = 5.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFLAG 275
KF FFF FF+F F++ F G
Sbjct: 345 KFSFFFIFFYFLVSFYYSLFLIVSSFMG 372
Score = 27.9 bits (63), Expect = 7.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFFLAGVVGS 279
F F FFF FF+F F++ L +V S
Sbjct: 340 SFMKNKFSFFFIFFYFLVSFYYSLFLIVSS 369
Score = 27.9 bits (63), Expect = 7.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFF 270
F F FFF FF+F F++
Sbjct: 340 SFMKNKFSFFFIFFYFLVSFYY 361
Score = 27.9 bits (63), Expect = 8.1
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFFFFFFL 273
P FF F FF F F + + FF
Sbjct: 9 PFLFFLFLMFFSFLMFNNYSWSGLFFF 35
Score = 27.6 bits (62), Expect = 9.2
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFF 271
F F F F+ F+
Sbjct: 380 NFNVGLSLPLVFMMFNMFWLSLFY 403
>gnl|CDD|233790 TIGR02227, sigpep_I_bact, signal peptidase I, bacterial type. This
model represents signal peptidase I from most bacteria.
Eukaryotic sequences are likely organellar. Several
bacteria have multiple paralogs, but these represent
isozymes of signal peptidase I. Virtually all known
bacteria may be presumed to A related model finds a
simlar protein in many archaea and a few bacteria, as
well as a microsomal (endoplasmic reticulum) protein in
eukaryotes [Protein fate, Protein and peptide secretion
and trafficking].
Length = 163
Score = 31.4 bits (72), Expect = 0.31
Identities = 9/43 (20%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDIWGDVV 291
F FF + + G GS +P GD +
Sbjct: 1 LILSLLIAILLALLIRTFVFFPYKVPG--GSMEPTLKE-GDRI 40
Score = 28.4 bits (64), Expect = 3.6
Identities = 3/21 (14%), Positives = 4/21 (19%)
Query: 248 KFFFFFFFFFFFFFFFFFFFF 268
F FF +
Sbjct: 3 LSLLIAILLALLIRTFVFFPY 23
>gnl|CDD|177218 MTH00162, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 89
Score = 30.1 bits (69), Expect = 0.32
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
FF F + FF + +F FF F
Sbjct: 40 FFLLFLYLSFFNYELYFLLFFLTF 63
Score = 29.7 bits (68), Expect = 0.48
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFFL 273
FF F + FF + +F FFL
Sbjct: 38 SLFFLLFLYLSFFNYELYFLLFFL 61
Score = 29.0 bits (66), Expect = 0.70
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLAGV 276
FF F + FF + +F FF V
Sbjct: 38 SLFFLLFLYLSFFNYELYFLLFFLTFSV 65
>gnl|CDD|177215 MTH00158, ATP8, ATP synthase F0 subunit 8; Provisional.
Length = 32
Score = 28.6 bits (65), Expect = 0.35
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFF 271
F F F F +F F
Sbjct: 10 LILFILFLITFILFNILNYFIFI 32
Score = 28.6 bits (65), Expect = 0.35
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFF 272
F F F F +F F
Sbjct: 10 LILFILFLITFILFNILNYFIFI 32
Score = 26.3 bits (59), Expect = 2.5
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 253 FFFFFFFFFFFFFFFFFFFFL 273
F F F F +F+
Sbjct: 10 LILFILFLITFILFNILNYFI 30
>gnl|CDD|221704 pfam12676, DUF3796, Protein of unknown function (DUF3796). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 120 amino acids in length.
Length = 121
Score = 30.4 bits (69), Expect = 0.40
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQ 280
F F F+FF FF FF +FF A V +
Sbjct: 18 FFTFSGDKVSFLFYFFAFFAFFSYFFEAKVSNTL 51
Score = 28.9 bits (65), Expect = 1.3
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKP 282
F F F F+FF FF FF +F V +
Sbjct: 19 FTFSGDKVSFLFYFFAFFAFFSYFFEAKVSNTLA 52
>gnl|CDD|214443 MTH00163, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 445
Score = 31.7 bits (73), Expect = 0.43
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
F F F F F+F +FF
Sbjct: 29 FLLSFLFMLLFSLSFYFSNISYFF 52
Score = 31.7 bits (73), Expect = 0.49
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFLA 274
FF FF F ++ LA
Sbjct: 164 NSGSLSFFLLNFFGSLNFLWYLSMILA 190
Score = 31.7 bits (73), Expect = 0.54
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
F F F F F+F +F
Sbjct: 28 LFLLSFLFMLLFSLSFYFSNISYFF 52
Score = 31.3 bits (72), Expect = 0.59
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 244 IHLPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
I L ++ F F F F L
Sbjct: 12 IPLCFLKNSWWLVQSLLFLLSFLFMLLFSL 41
Score = 31.3 bits (72), Expect = 0.65
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLAGV 276
F F F F F+F + G+
Sbjct: 27 LLFLLSFLFMLLFSLSFYFSNISYFFGL 54
Score = 30.9 bits (71), Expect = 0.78
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFL 273
KF F F F ++ L
Sbjct: 3 KFLFMLLFLIPLCFLKNSWWLVQSLL 28
Score = 30.9 bits (71), Expect = 0.97
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 246 LPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
L F ++ F F F L
Sbjct: 11 LIPLCFLKNSWWLVQSLLFLLSFLFMLL 38
Score = 30.9 bits (71), Expect = 0.98
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 246 LPKFFFFFFFFFFFFFFFFFFFFFFFF 272
L ++ F F F F F
Sbjct: 17 LKNSWWLVQSLLFLLSFLFMLLFSLSF 43
Score = 30.5 bits (70), Expect = 1.0
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
FF FF F ++ FL
Sbjct: 168 LSFFLLNFFGSLNFLWYLSMILAFL 192
Score = 30.5 bits (70), Expect = 1.1
Identities = 6/25 (24%), Positives = 7/25 (28%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFF 272
F F F F F+F
Sbjct: 22 WLVQSLLFLLSFLFMLLFSLSFYFS 46
Score = 30.5 bits (70), Expect = 1.3
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
++ F F F F F+
Sbjct: 21 WWLVQSLLFLLSFLFMLLFSLSFYF 45
Score = 30.1 bits (69), Expect = 1.3
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
F F F F F+F +
Sbjct: 24 VQSLLFLLSFLFMLLFSLSFYFSNI 48
Score = 30.1 bits (69), Expect = 1.3
Identities = 8/31 (25%), Positives = 9/31 (29%), Gaps = 5/31 (16%)
Query: 247 PKFFFFFFFFFFFFFFFFF-----FFFFFFF 272
F F F F F F+ FF
Sbjct: 86 SNLFLFLILFLLIFLLLTFSSMNLLLFYIFF 116
Score = 30.1 bits (69), Expect = 1.4
Identities = 5/27 (18%), Positives = 7/27 (25%)
Query: 246 LPKFFFFFFFFFFFFFFFFFFFFFFFF 272
K ++ F F F F
Sbjct: 16 FLKNSWWLVQSLLFLLSFLFMLLFSLS 42
Score = 30.1 bits (69), Expect = 1.6
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 240 FGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
++ L + F F F F F+F
Sbjct: 17 LKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISY 50
Score = 29.7 bits (68), Expect = 1.9
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 246 LPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
LP F+ + FF FF L
Sbjct: 152 LPLLVGIFYLYNNSGSLSFFLLNFFGSL 179
Score = 29.7 bits (68), Expect = 1.9
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFL 273
FF FF F ++ +
Sbjct: 163 NNSGSLSFFLLNFFGSLNFLWYLSMI 188
Score = 28.2 bits (64), Expect = 6.4
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
F+ + FF FF F
Sbjct: 159 FYLYNNSGSLSFFLLNFFGSLNFLW 183
Score = 27.4 bits (62), Expect = 9.5
Identities = 6/25 (24%), Positives = 7/25 (28%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFF 272
K + F F F F F
Sbjct: 81 KKNNYSNLFLFLILFLLIFLLLTFS 105
>gnl|CDD|233317 TIGR01218, Gpos_tandem_5TM, tandem five-transmembrane protein.
Members of this family of proteins, with average length
of 210, have no invariant residues but five predicted
transmembrane segments. Strangely, most members occur in
groups of consecutive paralogous genes. A striking
example is a set of eleven encoded consecutively,
head-to-tail, in Staphylococcus aureus strain COL.
Length = 208
Score = 31.4 bits (72), Expect = 0.43
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFLAGV 276
K+ F F + FF F F+ F G
Sbjct: 145 KYRIFILFLYIFFLGLSIFLFYLFINNGG 173
Score = 29.1 bits (66), Expect = 2.3
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 246 LPKFFFFFFFFFFFFFFFFFFFFFFF 271
F F + FF F F+ F
Sbjct: 144 FKYRIFILFLYIFFLGLSIFLFYLFI 169
Score = 28.3 bits (64), Expect = 3.6
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 246 LPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
P F + F F + FF F F+L
Sbjct: 140 RPTSFKYRIFILFLYIFFLGLSIFLFYL 167
Score = 28.0 bits (63), Expect = 6.1
Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 15/57 (26%)
Query: 236 FYPPFGDNIHLPKFFFFFFFFFFFFFFFFFF---------------FFFFFFLAGVV 277
P F + FF F F+ F F FFF L ++
Sbjct: 139 IRPTSFKYRIFILFLYIFFLGLSIFLFYLFINNGGENIILVINGIIFLFFFLLINML 195
>gnl|CDD|216554 pfam01529, zf-DHHC, DHHC palmitoyltransferase. This family
includes the well known DHHC zinc binding domain as well
as three of the four conserved transmembrane regions
found in this family of palmitoyltransferase enzymes.
Length = 167
Score = 30.5 bits (69), Expect = 0.60
Identities = 9/44 (20%), Positives = 12/44 (27%)
Query: 231 IQVFGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLA 274
+ F + L FF F F FF +L
Sbjct: 111 YLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFFHLYLI 154
Score = 28.2 bits (63), Expect = 3.7
Identities = 7/46 (15%), Positives = 10/46 (21%)
Query: 229 NEIQVFGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLA 274
+ F FF F F FF + +
Sbjct: 110 VYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLFFHLYLIL 155
Score = 28.2 bits (63), Expect = 4.1
Identities = 5/43 (11%), Positives = 7/43 (16%)
Query: 231 IQVFGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
+ + F FF F F
Sbjct: 106 FYYLVYLIRNIELFFFLILSLFSSIILLVLSLFFLLFLSFLLF 148
Score = 27.8 bits (62), Expect = 5.1
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFF 272
K+F F + + F++
Sbjct: 85 KYFLLFLLYLTLYLILLLVLSFYYL 109
Score = 27.1 bits (60), Expect = 7.8
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFLAG 275
FFF F FF FL+
Sbjct: 118 LFFFLILSLFSSIILLVLSLFFLLFLSF 145
>gnl|CDD|214338 CHL00025, ndhF, NADH dehydrogenase subunit 5.
Length = 741
Score = 31.4 bits (72), Expect = 0.64
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
+ F + F+ F +FFF F
Sbjct: 718 SYLFLYLFYVSIFLLILYFFFSFI 741
Score = 30.6 bits (70), Expect = 1.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFFL 273
+ F + F+ F +FFF F+
Sbjct: 718 SYLFLYLFYVSIFLLILYFFFSFI 741
Score = 28.3 bits (64), Expect = 6.9
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 245 HLPKFFFFFFFFFFFFFFFFFFF 267
+L + F+ F +FFF F
Sbjct: 719 YLFLYLFYVSIFLLILYFFFSFI 741
>gnl|CDD|223937 COG1005, NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H)
[Energy production and conversion].
Length = 332
Score = 31.1 bits (71), Expect = 0.65
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 235 GFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFF 271
G+ PF +P F +F F FFFF +
Sbjct: 260 GWLGPFPPPGWVPGPFVWFVLKTAFLFFFFLWLRATL 296
>gnl|CDD|177158 MTH00095, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 527
Score = 31.0 bits (71), Expect = 0.75
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFFLAGVV 277
FF F FF F F ++FF F FF + ++
Sbjct: 140 FFIFLFFSGFIFSSYYFFSFSFFSSSMI 167
Score = 30.7 bits (70), Expect = 1.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFF 271
FF F FF F F ++FF F FF
Sbjct: 140 FFIFLFFSGFIFSSYYFFSFSFF 162
Score = 30.3 bits (69), Expect = 1.5
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
FFF + FF FFF F F
Sbjct: 351 LFFFNNYMIFFSLMFFFSVFLTFG 374
Score = 29.5 bits (67), Expect = 2.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
FFF + FF FFF F F +
Sbjct: 352 FFFNNYMIFFSLMFFFSVFLTFGY 375
Score = 29.5 bits (67), Expect = 2.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
F F FF F F ++FF F FF
Sbjct: 141 FIFLFFSGFIFSSYYFFSFSFFSSS 165
Score = 29.5 bits (67), Expect = 2.7
Identities = 10/25 (40%), Positives = 10/25 (40%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
F FFFFF F F F L
Sbjct: 3 ILIFLILFFFFFLLLFILFLPFMKL 27
Score = 29.1 bits (66), Expect = 2.9
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 246 LPKFFFFFFFF---FFFFFFFFFFFFFFFFL 273
LP F + F+ F+ F F FFFF L
Sbjct: 425 LPSLFLYLDFYVPLFYLFMIMLFSFFFFKLL 455
Score = 29.1 bits (66), Expect = 3.1
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFFL 273
FFF + FF FFF F F
Sbjct: 351 LFFFNNYMIFFSLMFFFSVFLTFG 374
Score = 29.1 bits (66), Expect = 3.4
Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 9/49 (18%)
Query: 234 FGFYPPFGDNIHLPKFFFFFFFFFFFFFFF---------FFFFFFFFFL 273
F+ F + F FF F FFFF + F F FL
Sbjct: 479 LKFFDLFLNKFGYKGFNFFSSFSFFFFSYMKSFKYNSLLILLFLIFLFL 527
Score = 28.3 bits (64), Expect = 5.3
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
FFF + FF FFF FL
Sbjct: 347 LILELFFFNNYMIFFSLMFFFSVFL 371
Score = 28.3 bits (64), Expect = 5.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 243 NIHLPKFFFFFFFFFFFFFFFFFFFFF 269
+ ++P F+ F F FFFF F
Sbjct: 433 DFYVPLFYLFMIMLFSFFFFKLLFKEL 459
Score = 28.3 bits (64), Expect = 6.4
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 244 IHLPKFFFFFFFFFFFFFFFFFFFFFFFF 272
I L FFFFF F F F FF
Sbjct: 5 IFLILFFFFFLLLFILFLPFMKLNLFFLE 33
>gnl|CDD|217705 pfam03739, YjgP_YjgQ, Predicted permease YjgP/YjgQ family. Members
of this family are predicted integral membrane proteins
of unknown function. They are about 350 amino acids long
and contain about 6 transmembrane regions. They are
predicted to be permeases although there is no
verification of this.
Length = 354
Score = 30.7 bits (70), Expect = 0.81
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDIW 287
F F F L ++ PL DI
Sbjct: 7 FLKPFLLVLLVLLLLFLLVDLLRLLDDILSKGLPLADIL 45
>gnl|CDD|214445 MTH00166, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 160
Score = 30.2 bits (69), Expect = 0.82
Identities = 5/26 (19%), Positives = 5/26 (19%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFL 273
KF F F F
Sbjct: 75 KFKFSLKLLILFLLMLLLMLNNFIKN 100
Score = 27.8 bits (63), Expect = 4.9
Identities = 4/25 (16%), Positives = 4/25 (16%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFF 272
KF F F
Sbjct: 77 KFSLKLLILFLLMLLLMLNNFIKNS 101
Score = 27.8 bits (63), Expect = 5.0
Identities = 2/27 (7%), Positives = 2/27 (7%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFFFFFFL 273
F F
Sbjct: 78 FSLKLLILFLLMLLLMLNNFIKNSEMS 104
Score = 27.5 bits (62), Expect = 5.8
Identities = 4/26 (15%), Positives = 5/26 (19%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFL 273
+ F F F F
Sbjct: 74 EKFKFSLKLLILFLLMLLLMLNNFIK 99
Score = 27.5 bits (62), Expect = 5.9
Identities = 3/26 (11%), Positives = 3/26 (11%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFL 273
K F F
Sbjct: 81 KLLILFLLMLLLMLNNFIKNSEMSNF 106
Score = 27.1 bits (61), Expect = 9.2
Identities = 2/30 (6%), Positives = 2/30 (6%)
Query: 244 IHLPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
F F
Sbjct: 76 FKFSLKLLILFLLMLLLMLNNFIKNSEMSN 105
>gnl|CDD|177152 MTH00087, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 195
Score = 30.3 bits (69), Expect = 0.85
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFFLAGVVGS 279
FF F F F + +F L +V
Sbjct: 4 VFFLDVFMFVFLLQYLLYFKESMLNVLVKK 33
Score = 29.2 bits (66), Expect = 1.9
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
FF F F F + +F
Sbjct: 4 VFFLDVFMFVFLLQYLLYFKESML 27
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 30.8 bits (70), Expect = 0.89
Identities = 6/30 (20%), Positives = 7/30 (23%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFLAGVV 277
F F F F F +V
Sbjct: 12 LFRRRLNLLFLIIFLLFALLILRLFYLQIV 41
Score = 30.1 bits (68), Expect = 1.6
Identities = 7/33 (21%), Positives = 8/33 (24%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQ 280
F F F F+L V G
Sbjct: 13 FRRRLNLLFLIIFLLFALLILRLFYLQIVQGDD 45
Score = 27.8 bits (62), Expect = 8.3
Identities = 4/26 (15%), Positives = 5/26 (19%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFFFFFF 272
+ F F F F
Sbjct: 10 GRLFRRRLNLLFLIIFLLFALLILRL 35
>gnl|CDD|222228 pfam13567, DUF4131, Domain of unknown function (DUF4131). This
domain is frequently found to the N-terminus of the
Competence domain, pfam03772.
Length = 173
Score = 30.0 bits (68), Expect = 1.1
Identities = 2/38 (5%), Positives = 7/38 (18%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDI 286
+ G+ ++ D+
Sbjct: 29 LLLYRRKRRRTLLLLLLLLLLGGLGLGLRAYRRAANDL 66
Score = 28.1 bits (63), Expect = 4.2
Identities = 2/41 (4%), Positives = 5/41 (12%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDIWGD 289
+ L + L +
Sbjct: 32 YRRKRRRTLLLLLLLLLLGGLGLGLRAYRRAANDLSHLLDG 72
>gnl|CDD|177136 MTH00064, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 151
Score = 29.4 bits (67), Expect = 1.2
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 244 IHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGS 279
+ P F + FFFFFF V S
Sbjct: 71 VFSPNSSFVSYSNLGELGVFFFFFFGLLLCVLVFYS 106
>gnl|CDD|190882 pfam04144, SCAMP, SCAMP family. In vertebrates, secretory carrier
membrane proteins (SCAMPs) 1-3 constitute a family of
putative membrane-trafficking proteins composed of
cytoplasmic N-terminal sequences with NPF repeats, four
central transmembrane regions (TMRs), and a cytoplasmic
tail. SCAMPs probably function in endocytosis by
recruiting EH-domain proteins to the N-terminal NPF
repeats but may have additional functions mediated by
their other sequences.
Length = 177
Score = 29.9 bits (68), Expect = 1.2
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 252 FFFFFFFFFFFFFFFFFFFFFLA 274
F FF+FFF FF F +
Sbjct: 100 FNFFWFFFIFFLHILFCIIQAVG 122
Score = 29.1 bits (66), Expect = 2.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 253 FFFFFFFFFFFFFFFFFFFFLAGVVGS 279
F FF+FFF FF F G+ G
Sbjct: 100 FNFFWFFFIFFLHILFCIIQAVGIPGW 126
Score = 28.7 bits (65), Expect = 2.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 249 FFFFFFFFFFFFFFFFFFFFF 269
F FF+FFF FF F
Sbjct: 100 FNFFWFFFIFFLHILFCIIQA 120
Score = 28.7 bits (65), Expect = 2.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 250 FFFFFFFFFFFFFFFFFFFFF 270
F FF+FFF FF F
Sbjct: 100 FNFFWFFFIFFLHILFCIIQA 120
Score = 28.7 bits (65), Expect = 2.9
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 251 FFFFFFFFFFFFFFFFFFFFF 271
F FF+FFF FF F
Sbjct: 100 FNFFWFFFIFFLHILFCIIQA 120
>gnl|CDD|216975 pfam02326, YMF19, Plant ATP synthase F0. This family corresponds
to subunit 8 (YMF19) of the F0 complex of plant and
algae mitochondrial F-ATPases (EC:3.6.1.34).
Length = 84
Score = 28.1 bits (63), Expect = 1.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFFLAGVV 277
+F FF+ FFF F+ F F L +
Sbjct: 8 YFTQFFWLCLFFFTFYIFLLNFILPKIS 35
Score = 26.6 bits (59), Expect = 5.0
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 244 IHLPKFFFFFFFFFFFFFFFFFFFFFFFF 272
+ +FF+ FFF F+ F F
Sbjct: 7 TYFTQFFWLCLFFFTFYIFLLNFILPKIS 35
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 29.9 bits (68), Expect = 1.5
Identities = 5/24 (20%), Positives = 6/24 (25%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
F F +FFF
Sbjct: 1 SLLGFLFSLLPPILLLVGVWFFFR 24
Score = 29.6 bits (67), Expect = 2.4
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 245 HLPKFFFFFFFFFFFFFFFFFFFF 268
L F F +FFF
Sbjct: 1 SLLGFLFSLLPPILLLVGVWFFFR 24
>gnl|CDD|211613 TIGR00882, 2A0105, oligosaccharide:H+ symporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 396
Score = 30.1 bits (68), Expect = 1.6
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 247 PKFFFFFFFFFFFFFFFFFFF-FFFFFLAGVVGSQK 281
F+ F FFF +FF +F FF +L V G K
Sbjct: 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSK 37
>gnl|CDD|214437 MTH00152, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 163
Score = 29.1 bits (66), Expect = 1.7
Identities = 13/33 (39%), Positives = 13/33 (39%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGS 279
P F F F FF F F FFFFL
Sbjct: 75 PLFGSNFKFVFFSLTLFGFLGLFFFFLYLYSSG 107
Score = 28.3 bits (64), Expect = 2.9
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGS 279
F F FF F F FFFF +L G
Sbjct: 78 GSNFKFVFFSLTLFGFLGLFFFFLYLYSSGGL 109
Score = 28.3 bits (64), Expect = 3.6
Identities = 11/49 (22%), Positives = 13/49 (26%), Gaps = 5/49 (10%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDIWGDVVNLAS 295
P F F F FF F F FF + +L
Sbjct: 73 PNPLFGSNFKFVFFSLTLFGFLGLFFF-----FLYLYSSGGLSLSSLFD 116
Score = 27.5 bits (62), Expect = 6.4
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 238 PPFGDNIHLPKFFFFFFFFFFFFFFFFFFF 267
P FG N F F F FFFF + +
Sbjct: 75 PLFGSNFKFVFFSLTLFGFLGLFFFFLYLY 104
>gnl|CDD|110319 pfam01306, LacY_symp, LacY proton/sugar symporter. This family is
closely related to the sugar transporter family.
Length = 413
Score = 29.7 bits (67), Expect = 1.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQK 281
+ F FFFF+FF +F FF +L V K
Sbjct: 10 WMFGLFFFFYFFIMSAYFPFFPIWLHDVNHLSK 42
Score = 27.8 bits (62), Expect = 7.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 260 FFFFFFFFFFFFFLAGVVGSQKPLYDIWGDVVNLASRMDS 299
F+ F FFFF+FF ++ + P + IW VN S+ D+
Sbjct: 9 FWMFGLFFFFYFF---IMSAYFPFFPIWLHDVNHLSKTDT 45
>gnl|CDD|237560 PRK13922, PRK13922, rod shape-determining protein MreC;
Provisional.
Length = 276
Score = 29.6 bits (67), Expect = 1.8
Identities = 4/30 (13%), Positives = 5/30 (16%)
Query: 246 LPKFFFFFFFFFFFFFFFFFFFFFFFFLAG 275
+P F LA
Sbjct: 1 MPLFSRGKKLLLLLLLILLLLLALALLLAD 30
Score = 28.0 bits (63), Expect = 5.3
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 2/48 (4%)
Query: 247 PKFFFFF--FFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDIWGDVVN 292
F +GS P+ + GDVV+
Sbjct: 1 MPLFSRGKKLLLLLLLILLLLLALALLLADRRLGSLSPVRQVVGDVVS 48
>gnl|CDD|150551 pfam09891, DUF2118, Uncharacterized protein conserved in archaea
(DUF2118). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 149
Score = 28.9 bits (65), Expect = 1.9
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 97 DFDKILFVPKASRVEKIKVAGWT-YLAACGASRVEK 131
D +++ K + ++ + G+ Y RV K
Sbjct: 68 DGRTGIYLKKGTELKLVPAEGYKVYPIVDEGDRVLK 103
>gnl|CDD|177151 MTH00086, CYTB, cytochrome b; Provisional.
Length = 355
Score = 29.5 bits (67), Expect = 1.9
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
F F F F +FF F F+
Sbjct: 332 FLFLSQIFSFIYFFLILLMLFLFY 355
Score = 28.8 bits (65), Expect = 3.7
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFFFFF 271
P F F F +FF F F+
Sbjct: 331 PFLFLSQIFSFIYFFLILLMLFLFY 355
Score = 28.0 bits (63), Expect = 5.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 246 LPKFFFFFFFFFFFFFFFFFF 266
L + F F +FF F F+
Sbjct: 335 LSQIFSFIYFFLILLMLFLFY 355
>gnl|CDD|239583 cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase
(Delta6-FADS)-like CD includes the integral-membrane
enzymes: delta-4, delta-5, delta-6, delta-8,
delta-8-sphingolipid, and delta-11 desaturases found in
vertebrates, higher plants, fungi, and bacteria. These
desaturases are required for the synthesis of highly
unsaturated fatty acids (HUFAs), which are mainly
esterified into phospholipids and contribute to
maintaining membrane fluidity. While HUFAs may be
required for cold tolerance in bacteria, plants and
fish, the primary role of HUFAs in mammals is cell
signaling. These enzymes are described as front-end
desaturases because they introduce a double bond between
the pre-exiting double bond and the carboxyl (front) end
of the fatty acid. Various substrates are involved, with
both acyl-coenzyme A (CoA) and acyl-lipid desaturases
present in this CD. Acyl-lipid desaturases are localized
in the membranes of cyanobacterial thylakoid, plant
endoplasmic reticulum (ER), and plastid; and acyl-CoA
desaturases are present in ER membrane. ER-bound plant
acyl-lipid desaturases and acyl-CoA desaturases require
cytochrome b5 as an electron donor. Most of the
eukaryotic desaturase domains have an adjacent
N-terminal cytochrome b5-like domain. This domain family
has extensive hydrophobic regions that would be capable
of spanning the membrane bilayer at least twice.
Comparison of sequences also reveals the existence of
three regions of conserved histidine cluster motifs that
contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH.
These histidine residues are reported to be
catalytically essential and proposed to be the ligands
for the iron atoms contained within the homolog,
stearoyl CoA desaturase.
Length = 204
Score = 29.1 bits (66), Expect = 2.1
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLAGVV 277
F+FF F +LA V
Sbjct: 99 FYFFPLLALLLLAFLVVQLAGGLWLAVVF 127
Score = 28.0 bits (63), Expect = 5.1
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGS 279
K F + F+FF F + + G
Sbjct: 88 QKKRFLHRYQHFYFFPLLALLLLAFLVVQLAGG 120
>gnl|CDD|224196 COG1277, NosY, ABC-type transport system involved in multi-copper
enzyme maturation, permease component [General function
prediction only].
Length = 278
Score = 29.4 bits (66), Expect = 2.4
Identities = 6/41 (14%), Positives = 9/41 (21%)
Query: 231 IQVFGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFF 271
+ +FGF L F + F
Sbjct: 132 LLLFGFPGNVSSISRLLLFLGSSLLYGLVLLSISLLISSLF 172
>gnl|CDD|233071 TIGR00649, MG423, conserved hypothetical protein. Contains an
ATP-binding domain at the N-terminal end of the protein.
Possibly part of a superfamily of beta-lactmases
[Hypothetical proteins, Conserved].
Length = 422
Score = 29.2 bits (66), Expect = 2.8
Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 32/182 (17%)
Query: 21 EYLFLQLPDPLFKFYVAG---GLAVL---ISELYLNVSRPYRELYYEQYDSVSVMFATLV 74
YL Q+ + G +A++ I E LNV E++ + V T +
Sbjct: 76 PYLLHQVGFFP----IYGTPLTIALIKSKIKEHGLNVRTDLLEIHEG--EPVEFGENTAI 129
Query: 75 E----SHDTAPASTLVSLEILNQII---CDFDKILFVPKASRVEKIKVAGWTYLAACGAS 127
E +H + P S +L I DF K P + +A G
Sbjct: 130 EFFRITH-SIPDSVGFALHTPLGYIVYTGDF-KFDNTPVIGEPPDLN-----RIAEIGKK 182
Query: 128 RVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPL-----VMMTCFAANMLRVLRKFNAAN 182
V ++ T + G PS + N +++ FA+N+ RV + A
Sbjct: 183 GV-LCLISDSTNVENPGFTPSEAKVLEQLNDIFKNADGRIIVATFASNIHRVQQLIQIAR 241
Query: 183 NH 184
+
Sbjct: 242 KN 243
>gnl|CDD|220694 pfam10326, 7TM_GPCR_Str, Serpentine type 7TM GPCR chemoreceptor
Str. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Str is a member of the
Str superfamily of chemoreceptors. Almost a quarter
(22.5%) of str and srj family genes and pseudogenes in
C. elegans appear to have been newly formed by gene
duplications since the species split. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 307
Score = 29.0 bits (66), Expect = 3.0
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 245 HLPKFFFFFFFFFFFFFFFFFFFFFFF 271
K +F + F + +FFF
Sbjct: 121 SGKKLILWFLYPLIFGIIWGLLVYFFF 147
Score = 27.8 bits (63), Expect = 6.3
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFF 272
K +F + F + +FFF
Sbjct: 123 KKLILWFLYPLIFGIIWGLLVYFFF 147
>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain
(I29). This domain is found at the N-terminus of some
C1 peptidases such as Cathepsin L where it acts as a
propeptide. There are also a number of proteins that are
composed solely of multiple copies of this domain such
as the peptidase inhibitor salarin. This family is
classified as I29 by MEROPS.
Length = 58
Score = 26.4 bits (59), Expect = 3.1
Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 167 FAANMLRVLRKFNAANNHTFKLRI 190
F N+ + + N N ++ L +
Sbjct: 25 FKENLRFI-EEHNKKGNVSYTLGL 47
>gnl|CDD|177154 MTH00091, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 273
Score = 28.7 bits (65), Expect = 3.5
Identities = 10/24 (41%), Positives = 10/24 (41%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFFL 273
FF FFF F FF F L
Sbjct: 110 FFSKNFFFLLLFGLLICFFQMFLL 133
Score = 27.9 bits (63), Expect = 6.1
Identities = 9/23 (39%), Positives = 9/23 (39%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFF 271
FF FFF F FF F
Sbjct: 110 FFSKNFFFLLLFGLLICFFQMFL 132
Score = 27.9 bits (63), Expect = 6.1
Identities = 9/28 (32%), Positives = 9/28 (32%)
Query: 246 LPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
LP FF FFF F F
Sbjct: 101 LPFLLVLLQFFSKNFFFLLLFGLLICFF 128
>gnl|CDD|150923 pfam10327, 7TM_GPCR_Sri, Serpentine type 7TM GPCR chemoreceptor
Sri. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Sri is part of the Str
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 303
Score = 28.7 bits (65), Expect = 3.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 246 LPKFFFFFFFFFFFFFFFFFFFFFFF 271
+PK+ + F + F F F F+
Sbjct: 128 IPKWLYIFLYILCHIFPFLTAFLFYQ 153
Score = 28.3 bits (64), Expect = 4.4
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 243 NIHLPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
N H+ + + F + F F F F+
Sbjct: 124 NKHVIPKWLYIFLYILCHIFPFLTAFLFYQS 154
Score = 27.5 bits (62), Expect = 9.9
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 251 FFFFFFFFFFFFFFFFFFFFFFLAGV 276
+ + F + F F F F+ +G+
Sbjct: 131 WLYIFLYILCHIFPFLTAFLFYQSGL 156
>gnl|CDD|214460 MTH00212, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 160
Score = 28.0 bits (63), Expect = 3.7
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 234 FGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFF 271
FG+ N HL +F F +
Sbjct: 65 FGYMVALSPNEHLFFKKYFKGFGMILISLNLYLLLMTL 102
Score = 27.3 bits (61), Expect = 8.2
Identities = 5/32 (15%), Positives = 7/32 (21%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVG 278
FF +F F + G
Sbjct: 75 EHLFFKKYFKGFGMILISLNLYLLLMTLGSSN 106
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 29.0 bits (65), Expect = 3.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 248 KFFFFFFFFFFFFFFFFFF 266
KFF+F+F FF F +F ++
Sbjct: 1326 KFFWFYFISFFSFLYFTYY 1344
>gnl|CDD|177241 MTH00193, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 306
Score = 28.6 bits (65), Expect = 3.8
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
F F+ F F F+
Sbjct: 242 LMFLGGDLLSLLFYLKLLFISFLFI 266
Score = 27.8 bits (63), Expect = 7.4
Identities = 5/25 (20%), Positives = 6/25 (24%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
F F+ F F F
Sbjct: 243 MFLGGDLLSLLFYLKLLFISFLFIW 267
>gnl|CDD|214436 MTH00151, ND5, NADH dehydrogenase subunit 5; Provisional.
Length = 565
Score = 29.0 bits (66), Expect = 3.8
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 253 FFFFFFFFFFFFFFFFFFFFLAGVV 277
F F + F F +F L G+
Sbjct: 7 SSFLLFSYSVFLFPLLGYFGLNGIS 31
>gnl|CDD|146748 pfam04276, DUF443, Protein of unknown function (DUF443). Family of
uncharacterized proteins.
Length = 197
Score = 28.3 bits (64), Expect = 4.0
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFF 272
K FFF F + FF F F
Sbjct: 135 KNFFFILFAYIFFGGFSILALSGFI 159
Score = 27.6 bits (62), Expect = 7.6
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFFFF 270
P F FFF F + FF F
Sbjct: 132 PSFKNFFFILFAYIFFGGFSILAL 155
>gnl|CDD|221450 pfam12166, DUF3595, Protein of unknown function (DUF3595). This
family of proteins is functionally uncharacterized.This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 578 and 2525 amino
acids in length.
Length = 420
Score = 28.8 bits (65), Expect = 4.1
Identities = 11/45 (24%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 236 FYPPFGDNI-HLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGS 279
PP G L KF F F F F L
Sbjct: 50 LPPPRGQKKPKLVKFLMGGLFLILILLLLFGPLFLFSTLNPAGQI 94
>gnl|CDD|238179 cd00290, cytochrome_b_C, Cytochrome b(C-terminus)/b6/petD:
Cytochrome b is a subunit of cytochrome bc1, an
11-subunit mitochondrial respiratory enzyme. Cytochrome
b spans the mitochondrial membrane with 8 transmembrane
helices (A-H) in eukaryotes. In plants and
cyanobacteria, cytochrome b6 is analogous to eukaryote
cytochrome b, containing two chains: helices A-D are
encoded by the petB gene and helices E-H are encoded by
the petD gene in these organisms. Cytochrome b/b6
contains two bound hemes and two ubiquinol/ubiquinone
binding sites. The C-terminal domain is involved in
forming the ubiquinol/ubiquinone binding sites, but not
the heme binding sites. The N-terminal portion of
cytochrome b, which contains both heme binding sites,
is described in a separate CD.
Length = 147
Score = 28.0 bits (63), Expect = 4.2
Identities = 8/37 (21%), Positives = 10/37 (27%), Gaps = 5/37 (13%)
Query: 236 FYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFF 272
F+P F PK F F F+
Sbjct: 14 FHPYFW-----PKDLLGAFPILIIFMILVFYAPNLLG 45
>gnl|CDD|217505 pfam03348, Serinc, Serine incorporator (Serinc). This is a family
of eukaryotic membrane proteins which incorporate serine
into membranes and facilitate the synthesis of the
serine-derived lipids phosphatidylserine and
sphingolipid. Members of this family contain 11
transmembrane domains and form intracellular complexes
with key enzymes involved in serine and sphingolipid
biosynthesis.
Length = 428
Score = 28.7 bits (65), Expect = 4.5
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGS 279
K FF FFFF + GV+GS
Sbjct: 113 FKILLLIGLIVGAFFIPNGFFFFVWMYIGVIGS 145
>gnl|CDD|220693 pfam10325, 7TM_GPCR_Srz, Serpentine type 7TM GPCR chemoreceptor
Srz. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srz is a solo families
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srz appear to be under
strong adaptive evolutionary pressure.
Length = 266
Score = 28.3 bits (64), Expect = 4.5
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFL 273
K +F F F F FFF +
Sbjct: 48 KITYFLFIFLIIFLILIFFFTKNSII 73
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 28.0 bits (63), Expect = 4.6
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 252 FFFFFFFFFFFFFFFFFFFFFLAGVVGSQ 280
FF F F+A + S
Sbjct: 130 FFLFLLVLLLTALAASGLGLFIAALAPSF 158
>gnl|CDD|177132 MTH00060, ND3, NADH dehydrogenase subunit 3; Provisional.
Length = 116
Score = 27.2 bits (61), Expect = 4.8
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
F FF FF F +FF +
Sbjct: 3 VLLFVFFVFFLLFLVIYFFHSGLW 26
Score = 27.2 bits (61), Expect = 5.2
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFL 273
F FF FF F +FF
Sbjct: 2 LVLLFVFFVFFLLFLVIYFFHSGLW 26
Score = 27.2 bits (61), Expect = 6.0
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQ 280
F FF FF F +FF + G
Sbjct: 5 LFVFFVFFLLFLVIYFFHSGLWNNKIYSGGFS 36
>gnl|CDD|224376 COG1459, PulF, Type II secretory pathway, component PulF [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 397
Score = 28.3 bits (64), Expect = 4.9
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 245 HLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKP 282
L +F F + + + ++ +KP
Sbjct: 201 ALTQFLLALSDFLREWGWLLLLIIIIIAIGYLLLLRKP 238
>gnl|CDD|224588 COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related
proteins [Cell division and chromosome partitioning].
Length = 858
Score = 28.7 bits (64), Expect = 5.0
Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 1/51 (1%)
Query: 229 NEIQVFGFYPPFGDNIHLPKFFFFF-FFFFFFFFFFFFFFFFFFFLAGVVG 278
+E+ NIH P + F FL +G
Sbjct: 34 DEVTASAEAQRASLNIHHPDPAVLKSIVGILSQRIWERKFNDPDFLLIRLG 84
>gnl|CDD|220572 pfam10104, Brr6_like_C_C, Di-sulfide bridge nucleocytoplasmic
transport domain. Brr6_like_C_C is the highly conserved
C-terminal region of a group of proteins found in fungi.
It carries four highly conserved cysteine residues. It
is suggested that members of the family interact with
each other via di-sulfide bridges to form a complex
which is involved in nucleocytoplasmic transport. Brr6
in yeast is an essential integral membrane protein of
the NE-ER, wit two predicted transmembrane domains, and
is a dosage suppressor of Apq12, pfam12716.
Length = 135
Score = 27.6 bits (62), Expect = 5.0
Identities = 8/24 (33%), Positives = 8/24 (33%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFF 271
K F F F F F FF
Sbjct: 111 KTLLFILIIFLISLFSSNFAFGFF 134
>gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517). This
family consists of several hypothetical glycine rich
plant and bacterial proteins of around 300 residues in
length. The function of this family is unknown.
Length = 280
Score = 28.1 bits (63), Expect = 5.1
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 220 SRMDSTGLPNEIQVFGFYPPFGDNIHLPKFFFFFFFFFFFFFFFF--FFFFFFFFLAGVV 277
SR S+ + G+Y G F F F FF F F +AGV+
Sbjct: 17 SRSSSSPRSSSPGGGGYYGSPG-----GGFGFPFLIPFFGFGGGGGLFGLLILMAIAGVL 71
>gnl|CDD|216181 pfam00902, TatC, Sec-independent protein translocase protein
(TatC). The bacterial Tat system has a remarkable
ability to transport folded proteins even enzyme
complexes across the cytoplasmic membrane. It is
structurally and mechanistically similar to the Delta
pH-driven thylakoidal protein import pathway. A
functional Tat system or Delta pH-dependent pathway
requires three integral membrane proteins: TatA/Tha4,
TatB/Hcf106 and TatC/cpTatC. The TatC protein is
essential for the function of both pathways. It might be
involved in twin-arginine signal peptide recognition,
protein translocation and proton translocation. Sequence
analysis predicts that TatC contains six transmembrane
helices (TMHs), and experimental data confirmed that N-
and C-termini of TatC or cpTatC are exposed to the
cytoplasmic or stromal face of the membrane. The
cytoplasmic N-terminus and the first cytoplasmic loop
region of the Escherichia coli TatC protein are
essential for protein export. At least two TatC
molecules co-exist within each Tat translocon.
Length = 212
Score = 27.9 bits (63), Expect = 5.2
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFL 273
+F F F F F F +F L
Sbjct: 96 RFLLPFVFASFLLFLLGAAFAYFVVL 121
>gnl|CDD|197841 smart00714, LITAF, Possible membrane-associated motif in
LPS-induced tumor necrosis factor alpha factor (LITAF),
also known as PIG7, and other animal proteins.
Length = 67
Score = 26.1 bits (58), Expect = 5.2
Identities = 5/23 (21%), Positives = 5/23 (21%)
Query: 245 HLPKFFFFFFFFFFFFFFFFFFF 267
L F FF F
Sbjct: 23 VLAWLICFLLFFLCFCCCLPCCL 45
Score = 25.7 bits (57), Expect = 8.7
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 251 FFFFFFFFFFFFFFFFFFFFFFL 273
+ F FF F L
Sbjct: 23 VLAWLICFLLFFLCFCCCLPCCL 45
Score = 25.4 bits (56), Expect = 9.2
Identities = 4/23 (17%), Positives = 5/23 (21%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFF 271
+ F FF F
Sbjct: 23 VLAWLICFLLFFLCFCCCLPCCL 45
Score = 25.4 bits (56), Expect = 9.2
Identities = 4/23 (17%), Positives = 5/23 (21%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFF 272
+ F FF F
Sbjct: 23 VLAWLICFLLFFLCFCCCLPCCL 45
>gnl|CDD|214457 MTH00205, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 448
Score = 28.4 bits (64), Expect = 5.3
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFF 272
FF FFF F F F F
Sbjct: 32 LFFSSFFFSNSFLMTSFISSSFSF 55
Score = 27.6 bits (62), Expect = 9.7
Identities = 9/41 (21%), Positives = 10/41 (24%)
Query: 243 NIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPL 283
+ FF FFF F F PL
Sbjct: 22 SFFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPL 62
>gnl|CDD|177156 MTH00093, ND4L, NADH dehydrogenase subunit 4L; Provisional.
Length = 77
Score = 26.4 bits (59), Expect = 5.5
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFFLAGVVGS 279
F F +F +F FF+F V+ S
Sbjct: 27 FLMMSLFIYFMYFLNEMMFFYFMCFSVISS 56
>gnl|CDD|223692 COG0619, CbiQ, ABC-type cobalt transport system, permease component
CbiQ and related transporters [Inorganic ion transport
and metabolism].
Length = 252
Score = 27.7 bits (62), Expect = 6.8
Identities = 10/52 (19%), Positives = 12/52 (23%)
Query: 244 IHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDIWGDVVNLAS 295
+P F F F F L VG G +V
Sbjct: 55 AKIPLKFLLLLLGFLLLGLLLIAFTNGFSLGPAVGLFGLGPVTIGSLVLGLL 106
>gnl|CDD|177244 MTH00197, ND2, NADH dehydrogenase subunit 2; Provisional.
Length = 323
Score = 27.7 bits (62), Expect = 7.0
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFFF 269
P F ++ +F F F F
Sbjct: 183 PSIFMLYYLIYFVIMFMLFLFLS 205
>gnl|CDD|222537 pfam14093, DUF4271, Domain of unknown function (DUF4271). This
family of integral membrane proteins is functionally
uncharacterized. This family of proteins is found in
bacteria. Proteins in this family are typically between
221 and 326 amino acids in length.
Length = 207
Score = 27.6 bits (62), Expect = 7.4
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDIW 287
F F F F + + L G + K D W
Sbjct: 83 QLIVFGLIFGGVFLFILLKYILYRLIGWLFFDKKKIDQW 121
>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular
trafficking and secretion].
Length = 314
Score = 27.8 bits (62), Expect = 7.4
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 258 FFFFFFFFFFFFFFFLAGVVGSQKPLYDIWGDVVNLA 294
+ F FFFF F AG+V LY I ++ ++
Sbjct: 257 MYIMPIIFTFFFFNFPAGLV-----LYWIVSNLFSIL 288
>gnl|CDD|239579 cd03499, SQR_TypeC_SdhC, Succinate:quinone oxidoreductase (SQR)
Type C subfamily, Succinate dehydrogenase C (SdhC)
subunit; composed of bacterial SdhC and eukaryotic large
cytochrome b binding (CybL) proteins. SQR catalyzes the
oxidation of succinate to fumarate coupled to the
reduction of quinone to quinol. Members of this family
reduce high potential quinones such as ubiquinone. SQR
is also called succinate dehydrogenase or Complex II,
and is part of the citric acid cycle and the aerobic
respiratory chain. SQR is composed of a flavoprotein
catalytic subunit, an iron-sulfur protein and one or two
hydrophobic transmembrane subunits. Proteins in this
subfamily are classified as Type C SQRs because they
contain two transmembrane subunits and one heme group.
The heme and quinone binding sites reside in the
transmembrane subunits. The SdhC or CybL protein is one
of the two transmembrane subunits of bacterial and
eukaryotic SQRs. The two-electron oxidation of succinate
in the flavoprotein active site is coupled to the
two-electron reduction of quinone in the membrane anchor
subunits via electron transport through FAD and three
iron-sulfur centers. The reversible reduction of quinone
is an essential feature of respiration, allowing
transfer of electrons between respiratory complexes.
Length = 117
Score = 26.7 bits (60), Expect = 7.6
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 251 FFFFFFFFFFFFFFFFFFFFFFLAGV 276
+ F + F+ L G+
Sbjct: 56 LLGSWLGKLVLFGLTWALFYHLLNGI 81
>gnl|CDD|181676 PRK09165, PRK09165, replicative DNA helicase; Provisional.
Length = 497
Score = 27.9 bits (63), Expect = 7.6
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 165 TCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVG 203
T A N+ FNAA + + + + AV GVVG
Sbjct: 231 TALATNI-----AFNAAKAYRREAQPDGSKKAVNGGVVG 264
>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain
(I29). This domain is found at the N-terminus of some
C1 peptidases such as Cathepsin L where it acts as a
propeptide. There are also a number of proteins that are
composed solely of multiple copies of this domain such
as the peptidase inhibitor salarin. This family is
classified as I29 by MEROPS. Peptide proteinase
inhibitors can be found as single domain proteins or as
single or multiple domains within proteins; these are
referred to as either simple or compound inhibitors,
respectively. In many cases they are synthesised as part
of a larger precursor protein, either as a prepropeptide
or as an N-terminal domain associated with an inactive
peptidase or zymogen. This domain prevents access of the
substrate to the active site. Removal of the N-terminal
inhibitor domain either by interaction with a second
peptidase or by autocatalytic cleavage activates the
zymogen. Other inhibitors interact direct with
proteinases using a simple noncovalent lock and key
mechanism; while yet others use a conformational
change-based trapping mechanism that depends on their
structural and thermodynamic properties.
Length = 57
Score = 25.3 bits (56), Expect = 7.7
Identities = 6/24 (25%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 167 FAANMLRVLRKFNAANNHTFKLRI 190
F N+ ++ + N H++KL +
Sbjct: 25 FKENLKKI-EEHNKKYEHSYKLGV 47
>gnl|CDD|139556 PRK13414, PRK13414, flagellar biosynthesis protein FliZ;
Provisional.
Length = 209
Score = 27.5 bits (61), Expect = 8.2
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 259 FFFFFFFFFFFFFFLAGVVGSQKPLYD 285
FF FFF F F ++ S+K +
Sbjct: 69 VLFFLIFFFIIFLFKKMILNSKKSKNE 95
Score = 27.5 bits (61), Expect = 8.8
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 246 LPKFFFFFFFFFFFFFFF 263
L FF FFF F F
Sbjct: 65 LVTIVLFFLIFFFIIFLF 82
>gnl|CDD|215958 pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone
oxidoreductase, chain 3.
Length = 102
Score = 26.3 bits (59), Expect = 8.8
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFFLAGVV 277
+ F F F F F L G++
Sbjct: 65 WAVVFNGLGFLSFVEMFLFLLILLLGLL 92
>gnl|CDD|177150 MTH00083, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 256
Score = 27.6 bits (62), Expect = 8.9
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 248 KFFFFFFFF--FFFFFFFFFFFFFFFFL 273
KF F F F FFF F+ FF +
Sbjct: 76 KFGMILFIFSEFMFFFSIFWTFFDAALV 103
>gnl|CDD|177153 MTH00090, ND1, NADH dehydrogenase subunit 1; Provisional.
Length = 284
Score = 27.6 bits (62), Expect = 9.2
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 250 FFFFFFFFFFFFFFFFFFFFFFFL 273
FF FF F F F F L
Sbjct: 221 FFSVLTSVLFFKFSFLMLFLIFSL 244
>gnl|CDD|133462 cd06852, GT_MraY, Phospho-N-acetylmuramoyl-pentapeptide-transferase
(mraY) is an enzyme responsible for the formation of the
first lipid intermediate in the synthesis of bacterial
cell wall peptidoglycan. It catalyzes the formation of
undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-
pentapeptide from UDP-MurNAc-pentapeptide and
undecaprenyl-phosphate. It is an integral membrane
protein with possibly ten transmembrane domains.
Length = 280
Score = 27.5 bits (62), Expect = 9.3
Identities = 6/38 (15%), Positives = 8/38 (21%)
Query: 233 VFGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFF 270
Y G + FF + F F
Sbjct: 85 ALLLYYFNGSGTLITLPFFKNGLIDLGILYIPFAIFVI 122
>gnl|CDD|220468 pfam09913, DUF2142, Predicted membrane protein (DUF2142). This
domain, found in various hypothetical prokaryotic
proteins, has no known function.
Length = 390
Score = 27.3 bits (61), Expect = 9.7
Identities = 10/98 (10%), Positives = 22/98 (22%), Gaps = 17/98 (17%)
Query: 215 VVNLASRMDSTGLPNEIQVFGFYPP------FGDNIHLPKFFFFFFFFFFF--------- 259
+ + ++ +P + + LP F
Sbjct: 258 APLIGGGATNVDFSAQLGYLLAHPLDYVRLFIRNVLSLPSVLAGQFISGGLGWLDTPLPS 317
Query: 260 --FFFFFFFFFFFFFLAGVVGSQKPLYDIWGDVVNLAS 295
+F F A S++ I ++ L
Sbjct: 318 WLYFIAIVALILLAFAALGAISKRLKRKILSLLLVLVI 355
>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family pfam01061.
Length = 278
Score = 27.3 bits (61), Expect = 9.8
Identities = 5/34 (14%), Positives = 7/34 (20%)
Query: 240 FGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFL 273
FG I F + + L
Sbjct: 163 FGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSL 196
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.329 0.143 0.463
Gapped
Lambda K H
0.267 0.0761 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,309,237
Number of extensions: 1628452
Number of successful extensions: 16745
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12076
Number of HSP's successfully gapped: 1026
Length of query: 306
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 209
Effective length of database: 6,635,264
Effective search space: 1386770176
Effective search space used: 1386770176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 59 (26.4 bits)