RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16155
(306 letters)
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 183 bits (468), Expect = 1e-57
Identities = 79/185 (42%), Positives = 103/185 (55%), Gaps = 25/185 (13%)
Query: 56 RELYYEQYDSVSVMFATLV-------ESHDTAPASTLVSLEILNQIICDFDKILFVPKAS 108
ELY++ YD V VMFA++ ES + L LN+II DFD +L PK S
Sbjct: 5 EELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRL--LNEIIADFDDLLSKPKFS 62
Query: 109 RVEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFA 168
VEKIK G TY+AA G S + + A EP + H M+ FA
Sbjct: 63 GVEKIKTIGSTYMAATGLSAIPSQEHAQ---------EPERQYM------HIGTMVE-FA 106
Query: 169 ANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLP 228
++ L N + + FKLR+GI HG V AGV+G+QKP YDIWG+ VN+ASRMDSTG+
Sbjct: 107 YALVGKLDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVL 166
Query: 229 NEIQV 233
++IQV
Sbjct: 167 DKIQV 171
Score = 76.1 bits (188), Expect = 1e-16
Identities = 23/33 (69%), Positives = 30/33 (90%)
Query: 274 AGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
AGV+G+QKP YDIWG+ VN+ASRMDSTG+ ++I
Sbjct: 137 AGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKI 169
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 130 bits (329), Expect = 4e-37
Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 37/182 (20%)
Query: 56 RELYYEQYDSVSVMFATLVE----SHDTAPASTLVSLEILNQIICDFDKILFVPKASRVE 111
R + ++YD SV+FA +V + TAPA LV L+++ FD++
Sbjct: 1 RNIIADKYDEASVLFADIVGFTERASSTAPA-DLVRF--LDRLYSAFDEL---------- 47
Query: 112 KIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANM 171
+EKI+V+G +Y+ G+ P H + FA +M
Sbjct: 48 ------------VDQHGLEKIEVSGDSYMVVSGV-PR------PRPDHTQALAD-FALDM 87
Query: 172 LRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 231
V + + LR+G+A G V AGVVGS++ Y +WGD VN+ASRM+ST +I
Sbjct: 88 TNVAAQLKDPRGNPVPLRVGLATGPVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQI 147
Query: 232 QV 233
QV
Sbjct: 148 QV 149
Score = 67.6 bits (166), Expect = 1e-13
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 274 AGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
AGVVGS++ Y +WGD VN+ASRM+ST +I
Sbjct: 115 AGVVGSRRFRYCVWGDAVNVASRMESTDSVGQI 147
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 127 bits (321), Expect = 1e-35
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 39/183 (21%)
Query: 56 RELYYEQYDSVSVMFA-----TLVESHDTAPASTLVSLEILNQIICDFDKILFVPKASRV 110
++Y +++D+VS++FA T + S TA LV LN++ FDK+
Sbjct: 25 HKIYIQKHDNVSILFADIEGFTSLASQCTA--QELVMT--LNELFARFDKL--------- 71
Query: 111 EKIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAAN 170
+ +IK+ G Y GL P R+ D+ H V M +
Sbjct: 72 -------------AAENHCLRIKILGDCYYCVSGL-PEARA----DHAHCCVEM---GMD 110
Query: 171 MLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNE 230
M+ + +R+GI G V GV+G +K +D+W + V LA+ M++ G
Sbjct: 111 MIEAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGR 170
Query: 231 IQV 233
I +
Sbjct: 171 IHI 173
Score = 66.1 bits (162), Expect = 4e-13
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 273 LAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
GV+G +K +D+W + V LA+ M++ G I
Sbjct: 138 HCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRI 171
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 126 bits (318), Expect = 2e-35
Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 33/178 (18%)
Query: 61 EQYDSVSVMFA-----TLVESHDTAPASTLVSLEILNQIICDFDKILFVPKASRVEKIKV 115
++YD+V+++F+ S + + + +LN + FD + K V K++
Sbjct: 8 KRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVET 67
Query: 116 AGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVL 175
G Y+ G H + A +M+ +
Sbjct: 68 VGDKYMTVSGLPE--------------------------PCIHHARSICH-LALDMMEIA 100
Query: 176 RKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQV 233
+ + + ++ IGI G V GV+G + P Y ++G+ VNL SR ++TG +I V
Sbjct: 101 GQVQV-DGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINV 157
Score = 66.2 bits (162), Expect = 5e-13
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 273 LAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
+ GV+G + P Y ++G+ VNL SR ++TG +I
Sbjct: 122 VTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKI 155
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 125 bits (315), Expect = 7e-35
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 37/177 (20%)
Query: 61 EQYDSVSVMFATLVE----SHDTAPASTLVSLEILNQIICDFDKILFVPKASRVEKIKVA 116
+++ +V+++F+ +V +P ++++ LN + FD+
Sbjct: 10 KKFSNVTMLFSDIVGFTAICSQCSPL-QVITM--LNALYTRFDQQ--------------- 51
Query: 117 GWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLR 176
CG V K++ G Y A GL E +TH + + A M+ +
Sbjct: 52 -------CGELDVYKVETIGDAYCVAGGL-HK------ESDTHAVQIAL-MALKMMELSD 96
Query: 177 KFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQV 233
+ + + K+RIG+ G+V AGVVG + P Y ++G+ V LA++ +S +P +I V
Sbjct: 97 EVMSPHGEPIKMRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINV 153
Score = 66.2 bits (162), Expect = 5e-13
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 273 LAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
AGVVG + P Y ++G+ V LA++ +S +P +I
Sbjct: 118 FAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKI 151
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 110 bits (276), Expect = 2e-29
Identities = 42/176 (23%), Positives = 78/176 (44%), Gaps = 34/176 (19%)
Query: 61 EQYDSVSVMFATLVESHDTAPASTLVSLEI---LNQIICDFDKILFVPKASRVEKIKVAG 117
+++ +V+F+ +V T AS LE+ L+++ FD +E+
Sbjct: 5 QEHPEATVLFSDIVGF--TEIASRSSPLEVXSLLDELYQRFDAA--------IEEYP--- 51
Query: 118 WTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRK 177
++ K++ G Y+ C + + H V++ FA M +
Sbjct: 52 ----------QLYKVETIGDAYMVVCNV-TV------PCDDHADVLLE-FALRMHEEASR 93
Query: 178 FNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQV 233
++ ++R+G+ G V AGVVG + P + ++GD VN ASRM+S G +I +
Sbjct: 94 VASSLGEPVRIRVGMHSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHI 149
Score = 54.6 bits (132), Expect = 3e-09
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 274 AGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
AGVVG + P + ++GD VN ASRM+S G +I
Sbjct: 115 AGVVGRKMPRFXLFGDTVNTASRMESHGEAGQI 147
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 81.6 bits (201), Expect = 1e-17
Identities = 33/179 (18%), Positives = 51/179 (28%), Gaps = 60/179 (33%)
Query: 61 EQYDSVSVMFATLVESHDTA-----PASTLVSLEILNQIICDFDKILFVPKASRVEKIKV 115
V+V FA LV T A L L ++ +
Sbjct: 211 PGARQVTVAFADLVGF--TQLGEVVSAEELGHL--AGRLAGLARDLT------------- 253
Query: 116 AGWTYLAACGASRVEKIKVAGWTYLAACGL-EPSVRSASGEDNTHPLVMMTCFAANMLRV 174
A V IK G + C P + ++ V
Sbjct: 254 ----------APPVWFIKTIGDAVMLVCPDPAPLLD----------------TVLKLVEV 287
Query: 175 LRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQV 233
+ +N+ +LR G+A G + D +G VN+ASR+ P + V
Sbjct: 288 VD----TDNNFPRLRAGVASGMAVSRA-------GDWFGSPVNVASRVTGVARPGAVLV 335
Score = 48.4 bits (115), Expect = 1e-06
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 284 YDIWGDVVNLASRMDSTGLPNEI 306
D +G VN+ASR+ P +
Sbjct: 311 GDWFGSPVNVASRVTGVARPGAV 333
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 68.7 bits (168), Expect = 8e-14
Identities = 23/175 (13%), Positives = 61/175 (34%), Gaps = 6/175 (3%)
Query: 61 EQYDSVSVMFATLVESHDTAPASTLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTY 120
E D V+++F + S A + + + ++ + ++K G ++
Sbjct: 8 EPTDPVTLIFTDIESSTALWAAHPDLMPDAVAAHHRMVRSLI---GRYKCYEVKTVGDSF 64
Query: 121 LAACGA--SRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKF 178
+ A + + V+ + +L ++ + E + + +
Sbjct: 65 MIASKSPFAAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAHMDPEV 124
Query: 179 NAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQV 233
+ + ++R+GI G YD +G N+A+R +S ++ +
Sbjct: 125 YSRLWNGLRVRVGIHTGLCDIRHDEV-TKGYDYYGRTPNMAARTESVANGGQVLM 178
Score = 42.5 bits (100), Expect = 7e-05
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 274 AGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
YD +G N+A+R +S ++
Sbjct: 145 IRHDEV-TKGYDYYGRTPNMAARTESVANGGQV 176
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase,
lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 56.8 bits (138), Expect = 8e-10
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 168 AANMLRVLRKFN----AANNHTFKLRIGIAHGAVTAGVVGSQKPL-YDIWGDVVNLASRM 222
M LR+ N ++ IGI G V G +GS+K Y + G VNL R+
Sbjct: 88 GVEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGSEKRTKYGVVGAQVNLTYRI 147
Query: 223 DSTGLPNEI 231
+S +I
Sbjct: 148 ESYTTGGQI 156
Score = 34.1 bits (79), Expect = 0.035
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 273 LAGVVGSQKPL-YDIWGDVVNLASRMDSTGLPNEI 306
+ G +GS+K Y + G VNL R++S +I
Sbjct: 122 VVGNIGSEKRTKYGVVGAQVNLTYRIESYTTGGQI 156
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 55.0 bits (133), Expect = 2e-09
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 168 AANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGL 227
A +++ + ++RIGI G V D+ G V++ +R+ +
Sbjct: 84 ADDIVDAVAALG------IEVRIGIHAGEVEVRDASHG---TDVAGVAVHIGARVCALAG 134
Query: 228 PNEIQV 233
P+E+ V
Sbjct: 135 PSEVLV 140
Score = 39.6 bits (93), Expect = 4e-04
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 276 VVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
V D+ G V++ +R+ + P+E+
Sbjct: 108 EVRDASHGTDVAGVAVHIGARVCALAGPSEV 138
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 54.1 bits (131), Expect = 5e-09
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 168 AANMLRVLRKFNAANN-----HTFKLRIGIAHGAVTAGVVGSQKPL-YDIWGDVVNLASR 221
M + ++ ++R+GI G T G G+ + Y I G VNLASR
Sbjct: 85 GIAMRKHMKVLRQQWRAQGITKPLEIRMGINTGYCTVGNFGADTRMDYTIIGREVNLASR 144
Query: 222 MDSTGLPNEI 231
++S EI
Sbjct: 145 LESASEAGEI 154
Score = 32.1 bits (74), Expect = 0.12
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 274 AGVVGSQKPL-YDIWGDVVNLASRMDSTGLPNEI 306
G G+ + Y I G VNLASR++S EI
Sbjct: 121 VGNFGADTRMDYTIIGREVNLASRLESASEAGEI 154
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase;
HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1
PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*
Length = 219
Score = 52.2 bits (126), Expect = 3e-08
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 168 AANMLRVLRKFNAAN----------NHTFKLRIGIAHGAVTAGVVGSQKPL-YDIWGDVV 216
A ML L K N + R GI G G+ GSQ+ + G V
Sbjct: 103 ARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGLFGSQERSDFTAIGPSV 162
Query: 217 NLASRMDSTGLPNEI 231
N+A+R+ PN I
Sbjct: 163 NIAARLQEATAPNSI 177
Score = 31.8 bits (73), Expect = 0.17
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 274 AGVVGSQKPL-YDIWGDVVNLASRMDSTGLPNEI 306
G+ GSQ+ + G VN+A+R+ PN I
Sbjct: 144 VGLFGSQERSDFTAIGPSVNIAARLQEATAPNSI 177
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 50.7 bits (122), Expect = 7e-08
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 167 FAANMLRVLRKFNAAN--NHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDS 224
A + + +++ + RIGI G + V+ DI+GD VN+A+R+++
Sbjct: 73 CALEIQQAMQQREEDTPRKERIQYRIGINIGDI---VLED----GDIFGDAVNVAARLEA 125
Query: 225 TGLPNEI 231
P I
Sbjct: 126 ISEPGAI 132
Score = 34.6 bits (80), Expect = 0.022
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 284 YDIWGDVVNLASRMDSTGLPNEI 306
DI+GD VN+A+R+++ P I
Sbjct: 110 GDIFGDAVNVAARLEAISEPGAI 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.019
Identities = 53/255 (20%), Positives = 76/255 (29%), Gaps = 76/255 (29%)
Query: 2 W--ADVKDVNPICLTFEHWRWEYLF------LQLPDPL-FKFYVAGGLAV------LISE 46
W AD H++ Y F + P L F G + +I E
Sbjct: 1646 WNRAD-----------NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 47 LYLNVSRPYRELYYE-QYDSVSVMF----ATLVESHDTAPASTLVSLEILNQIICDFDKI 101
++ +++ E S S F L + T PA TL+ + K
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK---SKG 1751
Query: 102 LFVPKASRVEKIKVAG-----WTYLAACG-----ASRVEKIKVAGWTYLAACGLEPSVRS 151
L A+ AG + LA+ S VE + G T A + RS
Sbjct: 1752 LIPADAT------FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 152 ASGEDNTHPLVMMTCFAANMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVV--------G 203
G M+ A N RV F+ R+G G +V
Sbjct: 1806 NYG--------MI---AINPGRVAASFSQEALQYVVERVGKRTG----WLVEIVNYNVEN 1850
Query: 204 SQKPLYDIWGDVVNL 218
Q Y GD+ L
Sbjct: 1851 QQ---YVAAGDLRAL 1862
Score = 31.6 bits (71), Expect = 0.45
Identities = 53/277 (19%), Positives = 92/277 (33%), Gaps = 91/277 (32%)
Query: 10 P-ICLT-FEHWRWEYLFLQL----PDPLFKFY-----VAGGL--AVLISELYLNVSRPYR 56
P I + H+ + +L P L + + GL AV I+E + +
Sbjct: 239 PLIGVIQLAHY---VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE-----TDSWE 290
Query: 57 ELYYEQYDSVSVMFATLVESHDTAPASTL------------------------VSLEILN 92
+ +++V+F V ++ P ++L ++ E +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 93 QIICDFDKILFVPKASRVEKIKVAGWTYLA-ACGA-SRVEKIKVAGWTYLAACGLEPSVR 150
+ + L P +V ++ GA + V V+G + GL ++R
Sbjct: 351 DYVNKTNSHL--PAGKQV---------EISLVNGAKNLV----VSG-PPQSLYGLNLTLR 394
Query: 151 SA---SGEDNTH-P-----LVMMTCFAANMLRVLRKFNAANNHTFKLRI---GIAHGAVT 198
A SG D + P L F L V F H+ L I V
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRF----LPVASPF-----HSHLLVPASDLINKDLVK 445
Query: 199 AGVVGSQK----PLYDIWGDVVNLASRMDSTGLPNEI 231
V + K P+YD + D +L R+ S + I
Sbjct: 446 NNVSFNAKDIQIPVYDTF-DGSDL--RVLSGSISERI 479
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 33.3 bits (76), Expect = 0.060
Identities = 5/48 (10%), Positives = 11/48 (22%), Gaps = 2/48 (4%)
Query: 235 GFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKP 282
G G + ++ + F + V S +
Sbjct: 71 GLEDNQGGQYE--SWSYYRYDFGIYDDDPEIITLERREFDAAVNSGEL 116
Score = 30.6 bits (69), Expect = 0.49
Identities = 3/39 (7%), Positives = 12/39 (30%)
Query: 237 YPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAG 275
Y +G+ + + ++ + F + +
Sbjct: 64 YDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITL 102
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 31.9 bits (73), Expect = 0.29
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 1/49 (2%)
Query: 215 VVNLASRMDSTGLPNEIQVFGFYPPFGDNIHLPKFFFFFFFFFFFFFFF 263
VV++ +T + F FGD+ + F F
Sbjct: 26 VVSINVEGSTTVNTPRMP-RNFQQFFGDDSPFCQEGSPFQSSPFCQGGQ 73
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome,
protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris}
Length = 476
Score = 31.1 bits (70), Expect = 0.49
Identities = 12/72 (16%), Positives = 20/72 (27%)
Query: 204 SQKPLYDIWGDVVNLASRMDSTGLPNEIQVFGFYPPFGDNIHLPKFFFFFFFFFFFFFFF 263
S L + G + +S + P PP L + F
Sbjct: 313 SGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSC 372
Query: 264 FFFFFFFFFLAG 275
FF + ++G
Sbjct: 373 AFFSKTWIEVSG 384
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 30.3 bits (69), Expect = 0.75
Identities = 4/36 (11%), Positives = 7/36 (19%)
Query: 240 FGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAG 275
+ + P F + F F
Sbjct: 92 LWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQ 127
Score = 29.9 bits (68), Expect = 1.1
Identities = 8/49 (16%), Positives = 9/49 (18%), Gaps = 6/49 (12%)
Query: 234 FGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKP 282
P FG + F F F A Q
Sbjct: 95 HRNDPGFGR------QRQTHEQSYSQQDFDDIFSSMFGQQAHQRRRQHA 137
Score = 28.0 bits (63), Expect = 4.5
Identities = 3/39 (7%), Positives = 6/39 (15%)
Query: 234 FGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFF 272
+ + + F F F
Sbjct: 92 LWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAH 130
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 29.6 bits (67), Expect = 1.4
Identities = 1/19 (5%), Positives = 1/19 (5%)
Query: 247 PKFFFFFFFFFFFFFFFFF 265
P
Sbjct: 47 PPGSAGNDEENQPNNRPPQ 65
Score = 29.2 bits (66), Expect = 1.8
Identities = 0/22 (0%), Positives = 0/22 (0%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFF 268
Sbjct: 44 DVTPPGSAGNDEENQPNNRPPQ 65
Score = 28.4 bits (64), Expect = 3.5
Identities = 0/18 (0%), Positives = 0/18 (0%)
Query: 252 FFFFFFFFFFFFFFFFFF 269
Sbjct: 48 PGSAGNDEENQPNNRPPQ 65
Score = 28.4 bits (64), Expect = 3.5
Identities = 0/18 (0%), Positives = 0/18 (0%)
Query: 253 FFFFFFFFFFFFFFFFFF 270
Sbjct: 48 PGSAGNDEENQPNNRPPQ 65
Score = 28.4 bits (64), Expect = 3.5
Identities = 0/18 (0%), Positives = 0/18 (0%)
Query: 254 FFFFFFFFFFFFFFFFFF 271
Sbjct: 48 PGSAGNDEENQPNNRPPQ 65
Score = 28.4 bits (64), Expect = 3.5
Identities = 0/18 (0%), Positives = 0/18 (0%)
Query: 255 FFFFFFFFFFFFFFFFFF 272
Sbjct: 48 PGSAGNDEENQPNNRPPQ 65
Score = 28.0 bits (63), Expect = 4.7
Identities = 0/27 (0%), Positives = 3/27 (11%)
Query: 256 FFFFFFFFFFFFFFFFFLAGVVGSQKP 282
+ + +
Sbjct: 48 PGSAGNDEENQPNNRPPQSRMPEKGRK 74
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 28.9 bits (64), Expect = 1.9
Identities = 4/39 (10%), Positives = 11/39 (28%)
Query: 244 IHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKP 282
+ + F + F + V+ + +P
Sbjct: 42 LTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARP 80
Score = 28.5 bits (63), Expect = 3.1
Identities = 4/40 (10%), Positives = 7/40 (17%)
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLYDIW 287
+ F + F + G V
Sbjct: 45 SWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFT 84
Score = 27.0 bits (59), Expect = 9.0
Identities = 3/28 (10%), Positives = 6/28 (21%)
Query: 243 NIHLPKFFFFFFFFFFFFFFFFFFFFFF 270
+ P F + F +
Sbjct: 43 TVSWPVFITLITGLYLVTNALFALAYLA 70
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus,
glycoprotein, membran structural genomics, PSI-2,
protein structure initiative; HET: BOG; 2.10A {Homo
sapiens}
Length = 490
Score = 29.1 bits (65), Expect = 2.0
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 209 YDIWGDVVNLASRMDSTGLPNEIQVFGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFF 268
YD D + R E + + YP F D +H+ F F F F + F
Sbjct: 37 YDFEADAHWWSERTHKNLSDMENEFYYRYPSFQD-VHVMVFVGFGFLMTFLQRYGFSAVG 95
Query: 269 FFFFLAGVV 277
F F LA
Sbjct: 96 FNFLLAAFG 104
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 28.9 bits (64), Expect = 2.1
Identities = 8/88 (9%), Positives = 24/88 (27%), Gaps = 4/88 (4%)
Query: 192 IAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQVFGFY----PPFGDNIHLP 247
+ + + A V+ + + + ++ + F P
Sbjct: 303 LFYIHIFAFVLIQLVAKNEPTHIICKIMGHYENANNLLAVPTFPLSLLAPPTSFFKGVTQ 362
Query: 248 KFFFFFFFFFFFFFFFFFFFFFFFFLAG 275
+ F + F +F + ++G
Sbjct: 363 QPLTFITYSAFILVTGIWFADKWQAISG 390
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical,
heterotrimeric membrane protein complex, ATP- hydrolase,
ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa}
PDB: 3n2f_B* 3n23_B*
Length = 286
Score = 28.2 bits (62), Expect = 3.1
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLY 284
F F+ F+ F + + KP Y
Sbjct: 16 FKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTY 51
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 28.1 bits (62), Expect = 3.1
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 244 IHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKP 282
+ L +FF F F + + + +Q P
Sbjct: 38 VDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFP 76
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 27.8 bits (62), Expect = 4.9
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 5/74 (6%)
Query: 2 WADVKDVN---PICLTFEHWRWEYLFLQLPDPLFKFYVAGGLAVLISE--LYLNVSRPYR 56
W+D+++ P+C + V SE LYLN+ P
Sbjct: 62 WSDIRNATQFAPVCPQNIIDGRLPEVMLPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTE 121
Query: 57 ELYYEQYDSVSVMF 70
+ + VM
Sbjct: 122 DDIRDSGGPKPVMV 135
>2zxe_B Na+,K+-ATPase beta subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_B* 3b8e_B*
Length = 305
Score = 27.0 bits (59), Expect = 7.9
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 249 FFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKPLY 284
F F F+ F+ F L + +P Y
Sbjct: 34 FKIFLFYLIFYGCLAGIFIGTIQVLLLTLSDFEPKY 69
>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr
B556(FDN) subunit; oxidoreductase, selenium,
selenocysteine, seCys, molybdenum; HET: MGD HEM CDL;
1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*
Length = 217
Score = 26.7 bits (58), Expect = 8.4
Identities = 7/51 (13%), Positives = 13/51 (25%)
Query: 222 MDSTGLPNEIQVFGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFF 272
+ +G+ + + + FF F F F F
Sbjct: 28 VALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHH 78
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 27.1 bits (59), Expect = 8.6
Identities = 6/39 (15%), Positives = 11/39 (28%)
Query: 244 IHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKP 282
+ + FF F F + + +Q P
Sbjct: 56 LKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSP 94
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 9.1
Identities = 6/52 (11%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 65 SVSVMFATLVESHDTAPASTLVSLEILNQIICDFDKILFVPKASRVEKIKVA 116
+ + A + + P + + + +++I+ F+ +L+ K + + ++
Sbjct: 1391 AWMMNGALQILNSGIIPGN--RNADNVDKILEQFEYVLYPSKTLKTDGVRAV 1440
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.143 0.463
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,866,691
Number of extensions: 290239
Number of successful extensions: 1708
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1459
Number of HSP's successfully gapped: 102
Length of query: 306
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 213
Effective length of database: 4,105,140
Effective search space: 874394820
Effective search space used: 874394820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.8 bits)