RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16155
(306 letters)
>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 199
Score = 76.5 bits (187), Expect = 2e-17
Identities = 73/179 (40%), Positives = 98/179 (54%), Gaps = 21/179 (11%)
Query: 60 YEQYDSVSVMFATLVE-----SHDTAPASTLVSLEILNQIICDFDKILFVPKASRVEKIK 114
++ YD V VMFA++ + + L L +LN+II DFD +L PK S VEKIK
Sbjct: 1 HQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIK 60
Query: 115 VAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRV 174
G TY+AA G S + + A E + M FA ++
Sbjct: 61 TIGSTYMAATGLSAIPSQEHAQEP----------------ERQYMHIGTMVEFAYALVGK 104
Query: 175 LRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQV 233
L N + + FKLR+GI HG V AGV+G+QKP YDIWG+ VN+ASRMDSTG+ ++IQV
Sbjct: 105 LDAINKHSFNDFKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQV 163
Score = 33.4 bits (75), Expect = 0.021
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 271 FFLAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
+AGV+G+QKP YDIWG+ VN+ASRMDSTG+ ++I
Sbjct: 126 PVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKI 161
>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis
familiaris) [TaxId: 9615]}
Length = 190
Score = 57.6 bits (138), Expect = 1e-10
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 35/184 (19%)
Query: 53 RPYRELYYEQYDSVSVMFATLVESHDTA---PASTLVSLEILNQIICDFDKILFVPKASR 109
+ ++Y +++D+VS++FA + A A LV LN++ FDK+
Sbjct: 2 MMFHKIYIQKHDNVSILFADIEGFTSLASQCTAQELV--MTLNELFARFDKL-------- 51
Query: 110 VEKIKVAGWTYLAACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAA 169
+ +IK+ G Y GL + D+ H V M
Sbjct: 52 --------------AAENHCLRIKILGDCYYCVSGLPEAR-----ADHAHCCVEMGMD-- 90
Query: 170 NMLRVLRKFNAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPN 229
M+ + +R+GI G V GV+G +K +D+W + V LA+ M++ G
Sbjct: 91 -MIEAISLVREMTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAG 149
Query: 230 EIQV 233
I +
Sbjct: 150 RIHI 153
Score = 30.7 bits (68), Expect = 0.16
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 275 GVVGSQKPLYDIWGDVVNLASRMDSTGLPNEI 306
GV+G +K +D+W + V LA+ M++ G I
Sbjct: 120 GVLGLRKWQFDVWSNDVTLANHMEAGGKAGRI 151
>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase
{Trypanosome (Trypanosoma brucei), different isoform
[TaxId: 5691]}
Length = 235
Score = 58.0 bits (139), Expect = 2e-10
Identities = 24/175 (13%), Positives = 61/175 (34%), Gaps = 6/175 (3%)
Query: 61 EQYDSVSVMFATLVESHDTAPASTLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTY 120
E D V+++F + S A + + + ++ + ++K G ++
Sbjct: 8 EPTDPVTLIFTDIESSTALWAAHPDLMPDAVAAHHRMVRSLIG---RYKCYEVKTVGDSF 64
Query: 121 LAACG--ASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKF 178
+ A + V+ + +L ++ + E + + +
Sbjct: 65 MIASKSPFAAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAHMDPEV 124
Query: 179 NAANNHTFKLRIGIAHGAVTAGVVGSQKPLYDIWGDVVNLASRMDSTGLPNEIQV 233
+ + ++R+GI G K YD +G N+A+R +S ++ +
Sbjct: 125 YSRLWNGLRVRVGIHTGLCDIRHDEVTKG-YDYYGRTPNMAARTESVANGGQVLM 178
>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis
[TaxId: 118562]}
Length = 197
Score = 50.0 bits (118), Expect = 6e-08
Identities = 26/172 (15%), Positives = 59/172 (34%), Gaps = 24/172 (13%)
Query: 66 VSVMFATLVESHDTA---PASTLVSLEILNQIICDFDKILFVPKASRVEKIKVAGWTYLA 122
++++F+ +V + + + E+LN+ + + + +F + + + + +A
Sbjct: 8 ITILFSDIVGFTRMSNALQSQGVA--ELLNEYLGEMTRAVFENQGTVDKFVG---DAIMA 62
Query: 123 ACGASRVEKIKVAGWTYLAACGLEPSVRSASGEDNTHPLVMMTCFAANMLRVLRKFNAAN 182
GA +A +++ +
Sbjct: 63 LYGAPEEMSPSEQVRRAIATA---------------RQMLVALEKLNQGWQERGLVGRNE 107
Query: 183 NHTFKLRIGIAHGAVTAGVVGS-QKPLYDIWGDVVNLASRMDSTGLPNEIQV 233
+ R GI G G+ GS ++ + G VN+A+R+ PN I V
Sbjct: 108 VPPVRFRCGIHQGMAVVGLFGSQERSDFTAIGPSVNIAARLQEATAPNSIMV 159
Score = 29.2 bits (64), Expect = 0.48
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 280 QKPLYDIWGDVVNLASRMDSTGLPNEI 306
++ + G VN+A+R+ PN I
Sbjct: 131 ERSDFTAIGPSVNIAARLQEATAPNSI 157
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit,
N-terminal domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 261
Score = 32.8 bits (75), Expect = 0.039
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Query: 231 IQVFGFYPPFGDNIHLPKFFFFFFF-------FFFFFFFFFFFFFFFFFLAG 275
+ + G P G +L + +F F F F F+ G
Sbjct: 201 LHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLILALFVFYSPNTLG 252
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic
domain {Escherichia coli [TaxId: 562]}
Length = 249
Score = 29.9 bits (66), Expect = 0.30
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Query: 215 VVNLASRMDSTGLPNEIQVFGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFF 265
VV++ +T + F FGD+ + F F
Sbjct: 16 VVSINVEGSTTVNTPRMP-RNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGG 65
Score = 27.6 bits (60), Expect = 1.8
Identities = 8/37 (21%), Positives = 10/37 (27%)
Query: 246 LPKFFFFFFFFFFFFFFFFFFFFFFFFLAGVVGSQKP 282
+FF F F F G G Q+
Sbjct: 36 FQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQ 72
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC
{Escherichia coli [TaxId: 562]}
Length = 129
Score = 29.1 bits (65), Expect = 0.35
Identities = 4/44 (9%), Positives = 8/44 (18%)
Query: 233 VFGFYPPFGDNIHLPKFFFFFFFFFFFFFFFFFFFFFFFFLAGV 276
FF F + + + G+
Sbjct: 46 WLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGI 89
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 95
Score = 27.0 bits (60), Expect = 0.97
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 166 CFAANMLRVLRKFNAANNHTF 186
+ + L+KF+ + F
Sbjct: 20 DYQKTLAIALKKFSLEDASKF 40
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit,
N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 246
Score = 27.8 bits (62), Expect = 1.6
Identities = 8/49 (16%), Positives = 12/49 (24%), Gaps = 7/49 (14%)
Query: 234 FGFYPPFGDNIHLPKFFFFFFF-------FFFFFFFFFFFFFFFFFLAG 275
G P G + + K F ++ F L G
Sbjct: 189 TGSNNPTGISSDVDKIPFHPYYTIKDILGALLLILALMLLVLFAPDLLG 237
>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate
dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId:
5724]}
Length = 362
Score = 27.1 bits (59), Expect = 3.3
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 89 EILNQIICDFDKILFVPKASRVE 111
+ N+ F++ L +P S V+
Sbjct: 2 KYYNEPCHTFNEYLLIPGLSTVD 24
>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 279
Score = 26.0 bits (57), Expect = 5.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 215 VVNLASRMDSTGLPNEIQVFGFYPP 239
V + D+ P + + FGFY
Sbjct: 198 FVMVKFLNDTIVDPVDSEWFGFYRS 222
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex
{Chlamydomonas reinhardtii [TaxId: 3055]}
Length = 156
Score = 25.1 bits (55), Expect = 8.4
Identities = 3/26 (11%), Positives = 4/26 (15%)
Query: 247 PKFFFFFFFFFFFFFFFFFFFFFFFF 272
P + F F
Sbjct: 30 PNDLLYMFPVVILGTFACVIGLSVLD 55
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Length = 348
Score = 25.7 bits (55), Expect = 9.0
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 222 MDSTGLPNEIQVFGFYPPFGDNIHLPKFFFFFFFFFF---FFFFFFFFFFFFFFLAGVVG 278
M+ T PN FY PF + + + F ++ + F + F + G
Sbjct: 1 MNGTEGPN------FYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPI 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.329 0.143 0.463
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,211,596
Number of extensions: 56767
Number of successful extensions: 701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 66
Length of query: 306
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 221
Effective length of database: 1,240,546
Effective search space: 274160666
Effective search space used: 274160666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.9 bits)