BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16156
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 22/211 (10%)
Query: 12 LPLLPARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGG 71
LPL Y V DL GHG SSH L +L RV+ + +GHS+G
Sbjct: 47 LPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMGA 106
Query: 72 QLGTHYAAMFPQLMDRLIL----LDAMNQRKTKVEDTLTKVRDILTNQMNLEEKLNNRTQ 127
L T A++ P+ + LIL L A +K + LT D L+ +
Sbjct: 107 MLATAIASVRPKKIKELILVELPLPAEESKKESAVNQLTTCLDYLS---------STPQH 157
Query: 128 PVYTK-EQVVSKLKQRLLLNEISTESAEILFTRAVSARDGGFVFNFDQRLKNKIYLVMT- 185
P++ S+L+Q + +S E + IL R GG +++D ++ + L +
Sbjct: 158 PIFPDVATAASRLRQA--IPSLSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNN 215
Query: 186 ----EDQQHSIIRNIQCQTLCILSQDS-FNR 211
Q ++++IQ T + S NR
Sbjct: 216 LPGGRSQYLEMLKSIQVPTTLVYGDSSKLNR 246
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 1 MQDNAASFDKLLPLLPARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWT 60
+ N+A F+ L L R+ + +D GHGLS P + +Y ++ A
Sbjct: 77 ITSNSAVFEPLXIRLSDRFTTIAVDQRGHGLSDK--PETGYEANDYADDIAGLIRTLARG 134
Query: 61 KFIWLGHSLGGQLGTHYAAMFPQLMDRLILLDAMNQRKTKVEDTL 105
I +GHSLG + AA +P L+ ++ +D +T+ D L
Sbjct: 135 HAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDAL 179
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 5 AASFDKLLPLLPARYYYVCIDLPGHGLSSHFP---PGMLLDWLNYLLA-CHRVVNHFAWT 60
A+++ ++P L ++ V DL G G S +P PG ++ W+ + ++NHF
Sbjct: 45 ASNWRPIIPDLAENFFVVAPDLIGFG-QSEYPETYPGHIMSWVGMRVEQILGLMNHFGIE 103
Query: 61 KFIWLGHSLGGQLGTHYAAMFPQLMDRLILLDA----MNQRKTKVEDTLTKVRD 110
K +G+S+GG + P+ D++ L+ + MN R ++ L D
Sbjct: 104 KSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYAD 157
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 65 LGHSLGGQLGTHYAAMFPQLMDRLILLDAMN 95
+GHS GG L T YA ++P+ ++RL+L++ +
Sbjct: 119 IGHSXGGXLATRYALLYPRQVERLVLVNPIG 149
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 19 YYYVCIDLPGHGLS-SHFPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHY 77
Y+ + IDLPGHG S D++ LL R+++ + G+S+GG++ +Y
Sbjct: 43 YHVITIDLPGHGEDQSSMDETWNFDYITTLLD--RILDKYKDKSITLFGYSMGGRVALYY 100
Query: 78 AAMFPQLMDRLIL-------LDAMNQRKTK-VEDTLTKVRDI 111
A + LIL + NQ + + V+D KV DI
Sbjct: 101 AINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDI 142
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 18 RYYYVCIDLPGHGLSSH-FPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTH 76
++ + DLPGHG S+ P Y A V+ + G SLGG +G
Sbjct: 51 KWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIE 110
Query: 77 YAAMFPQLMDRLI 89
A +P++ +I
Sbjct: 111 MIARYPEMRGLMI 123
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 18 RYYYVCIDLPGHGLSSH-FPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTH 76
++ + DLPGHG S+ P Y A V+ + G SLGG +G
Sbjct: 51 KWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIE 110
Query: 77 YAAMFPQLMDRLI 89
A +P++ +I
Sbjct: 111 MIARYPEMRGLMI 123
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 25/175 (14%)
Query: 17 ARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLL-ACHRVVNHFAWTKFIWLGHSLGGQLGT 75
+Y + +DLPG G S P + L L+ A ++ +FI GHS GG L
Sbjct: 48 GQYQRIYLDLPGXGNSDPISPSTSDNVLETLIEAIEEII---GARRFILYGHSYGGYLA- 103
Query: 76 HYAAMFPQLMDRLILLDAMNQRKTKVEDTLTKVRDILTNQMN-LEEKLNNRTQPVYTKEQ 134
A+ L D+ + T T + + +N LEE +N PV KE
Sbjct: 104 --QAIAFHLKDQ-----TLGVFLTCPVITADHSKRLTGKHINILEEDIN----PVENKEY 152
Query: 135 VVSKLKQRLLLNEISTESAEILFTRAVSARDGGFV--------FNFDQRLKNKIY 181
L +++N + + L + D F+ F F+++LKN Y
Sbjct: 153 FADFLSXNVIINNQAWHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINY 207
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 4 NAASFDKLLPLL--PARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTK 61
NA ++D ++ L PA + +DLPGHG S+ G LN + +
Sbjct: 93 NAHTWDTVIVGLGEPA----LAVDLPGHGHSAWREDGNYSPQLNSETLAPVLRELAPGAE 148
Query: 62 FIWLGHSLGGQLGTHYAAMFPQLMDRLILLD 92
F+ +G SLGG AAM P L+ L+L+D
Sbjct: 149 FV-VGMSLGGLTAIRLAAMAPDLVGELVLVD 178
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 10 KLLPLLPARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLAC-----HRVVNHFAWTKFIW 64
++ PLL Y VC DL G+G SS P D NY ++ + +F
Sbjct: 43 RVAPLLANEYTVVCADLRGYGGSSK--PVGAPDHANYSFRAMASDQRELMRTLGFERFHL 100
Query: 65 LGHSLGGQLGTHYAAMFPQLMDRLILLD 92
+GH+ GG+ G A P + L +LD
Sbjct: 101 VGHARGGRTGHRMALDHPDSVLSLAVLD 128
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 69/175 (39%), Gaps = 25/175 (14%)
Query: 17 ARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLL-ACHRVVNHFAWTKFIWLGHSLGGQLGT 75
+Y + +DLPG G S P + L L+ A ++ +FI GHS GG L
Sbjct: 48 GQYQRIYLDLPGXGNSDPISPSTSDNVLETLIEAIEEII---GARRFILYGHSYGGYLA- 103
Query: 76 HYAAMFPQLMDRLILLDAMNQRKTKVEDTLTKVRDILTNQMN-LEEKLNNRTQPVYTKEQ 134
A+ L D+ + T T + + +N LEE +N PV KE
Sbjct: 104 --QAIAFHLKDQ-----TLGVFLTCPVITADHSKRLTGKHINILEEDIN----PVENKEY 152
Query: 135 VVSKLKQRLLLNEISTESAEILFTRAVSARDGGFV--------FNFDQRLKNKIY 181
L +++N + + L + D F+ F F+++LKN Y
Sbjct: 153 FADFLSXNVIINNQAWHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINY 207
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 22 VCIDLPGHGLSSHFP----PGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHY 77
+ +D+ HGLS P P M D ++ L A K ++GHS+GG+
Sbjct: 46 IQVDVRNHGLSPREPVMNYPAMAQDLVDTLDALQ-------IDKATFIGHSMGGKAVMAL 98
Query: 78 AAMFPQLMDRLILLD 92
A+ P +D+L+ +D
Sbjct: 99 TALAPDRIDKLVAID 113
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 8 FDKLLPLLPARYYYVCIDLPGHGLSSHFPPG------MLLDWLNYLLACHRVVNHFAWTK 61
+D LP L + + D GHG SS PPG + D L L A HF
Sbjct: 43 WDAQLPALTRHFRVLRYDARGHGASS-VPPGPYTLARLGEDVLELLDALEVRRAHF---- 97
Query: 62 FIWLGHSLGGQLGTHYAAMFPQLMDRLILLD 92
LG SLGG +G A PQ ++RL+L +
Sbjct: 98 ---LGLSLGGIVGQWLALHAPQRIERLVLAN 125
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 22 VCIDLPGHGLSSHFP----PGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHY 77
+ +D+ HGLS P P M D ++ L A K ++GHS+GG+
Sbjct: 46 IQVDVRNHGLSPREPVMNYPAMAQDLVDTLDAQQ-------IDKATFIGHSMGGKAVMAL 98
Query: 78 AAMFPQLMDRLILLD 92
A+ P +D+L+ +D
Sbjct: 99 TALAPDRIDKLVAID 113
>pdb|2QMQ|A Chain A, Crystal Structure Of A N-Myc Downstream Regulated 2
Protein (Ndrg2, Syld, Ndr2, Ai182517, Au040374) From Mus
Musculus At 1.70 A Resolution
Length = 286
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 102/249 (40%), Gaps = 46/249 (18%)
Query: 22 VCIDLPGHGLSSH-FPPGM---LLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHY 77
V +D PG + FP G LD L ++ C ++ + ++ I +G G + + Y
Sbjct: 71 VHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPC--ILQYLNFSTIIGVGVGAGAYILSRY 128
Query: 78 AAMFPQLMDRLILLDA-------MNQRKTKVEDTLTKVRDILTNQMNLEEKLNNRTQPVY 130
A P ++ L+L++ M+ K+ + + D++ + +E+L+ +
Sbjct: 129 ALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPDMILGHLFSQEELSGNS---- 184
Query: 131 TKEQVVSKLKQRLLLNEISTESAEILFTRAVSARDGGFVFNFDQRLKNKIYLVMTEDQQH 190
+++ K + ++ + + E+ E+ + + RD F + LK + LV+ + H
Sbjct: 185 ---ELIQKYR-GIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPH 240
Query: 191 SIIRNIQCQTLCILSQDSFNRVWIVNENYIGTYCLYSRHPKFHVEMVDSGHDMELEEPEK 250
++C + +Q SF ++M DSG +L +P K
Sbjct: 241 EDAV-VECNSKLDPTQTSF------------------------LKMADSGGQPQLTQPGK 275
Query: 251 LSGLISDFL 259
L+ FL
Sbjct: 276 LTEAFKYFL 284
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 33.9 bits (76), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 24 IDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHYAAMFPQ 83
+DLPG G S F L D +L A K IWLG SLGG + + A P+
Sbjct: 45 VDLPGFGRSRGFGALSLADXAEAVL-------QQAPDKAIWLGWSLGGLVASQIALTHPE 97
Query: 84 LMDRLILL------DAMNQRKTKVEDTLTKVRDILTN--QMNLEEKLNNRTQPVYTKEQV 135
+ L+ + A ++ D L + L++ Q +E L +T T Q
Sbjct: 98 RVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTXGTETARQD 157
Query: 136 VSKLKQRLL 144
LK+ +L
Sbjct: 158 ARALKKTVL 166
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 18 RYYYVCIDLPGHGLSSH-FPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTH 76
++ + DLPGHG S+ P Y A V+ + G LGG +G
Sbjct: 51 KWRVIAPDLPGHGKSTDAIDPDRSYSMEGYADAMTEVMQQLGIADAVVFGWGLGGHIGIE 110
Query: 77 YAAMFPQLMDRLI 89
A +P++ +I
Sbjct: 111 MIARYPEMRGLMI 123
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 10 KLLPLLPARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLAC-----HRVVNHFAWTKFIW 64
++ PLL Y VC DL G+G SS P D NY ++ + +F
Sbjct: 43 RVAPLLANEYTVVCADLRGYGGSSK--PVGAPDHANYSFRAMASDQRELMRTLGFERFHL 100
Query: 65 LGHSLGGQLGTHYAAMFPQLMDRLILLD 92
+GH GG+ G A P + L +LD
Sbjct: 101 VGHDRGGRTGHRMALDHPDSVLSLAVLD 128
>pdb|3OSQ|A Chain A, Maltose-Bound Maltose Sensor Engineered By Insertion Of
Circularly Permuted Green Fluorescent Protein Into E.
Coli Maltose Binding Protein At Position 175
Length = 661
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 109 RDILTNQMNLEEKLNNRTQPVYTKEQVVSKLKQRLLLNEISTESAEILFTRAVSARDGGF 168
+D+L N E++ P KE + +K K L+ N E FT + A DGG+
Sbjct: 155 KDLLPNPPKTWEEI-----PALDKE-LKAKGKSALMFN-----LQEPYFTWPLIAADGGY 203
Query: 169 VFNFDQRLKNKIYLVMTEDQQHSIIRNIQCQ 199
F ++ L + +Y +M + Q++ I N + +
Sbjct: 204 AFKYENHLSHNVY-IMADKQKNGIKANFKIR 233
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 10 KLLPLLPARYYYVCIDLPGHGLSSHFPPGMLLDWLNY---LLACHRV--VNHFAWTKFIW 64
K+ PLL + V DL G+G SS P + +NY ++A +V ++ + +F
Sbjct: 43 KIAPLLANNFTVVATDLRGYGDSSR--PASVPHHINYSKRVMAQDQVEVMSKLGYEQFYV 100
Query: 65 LGHSLGGQLGTHYAAMFPQLMDRLILLDAMNQRK 98
+GH G ++ A P + +L LLD K
Sbjct: 101 VGHDRGARVAHRLALDHPHRVKKLALLDIAPTHK 134
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 24 IDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHYAAMFPQ 83
+DLPG G S F L D +L A K IWLG +LGG + + A P+
Sbjct: 45 VDLPGFGRSRGFGALSLADMAEAVL-------QQAPDKAIWLGWALGGLVASQIALTHPE 97
Query: 84 LMDRLILL------DAMNQRKTKVEDTLTKVRDILTN--QMNLEEKLNNRTQPVYTKEQV 135
+ L+ + A ++ D L + L++ Q +E L +T T Q
Sbjct: 98 RVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQD 157
Query: 136 VSKLKQRLL 144
LK+ +L
Sbjct: 158 ARALKKTVL 166
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 13 PLLPARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQ 72
PL+ A Y + +D PG G S LN + VV+ K LG+S+GG
Sbjct: 61 PLVEAGYRVILLDCPGWGKSDSVVNSGSRSDLNARI-LKSVVDQLDIAKIHLLGNSMGGH 119
Query: 73 LGTHYAAMFPQLMDRLILLDA 93
+ +P+ + +L+L+
Sbjct: 120 SSVAFTLKWPERVGKLVLMGG 140
>pdb|2XMS|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 101/249 (40%), Gaps = 46/249 (18%)
Query: 22 VCIDLPGHGLSSH-FPPGM---LLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHY 77
V +D PG + FP G LD L ++ C V+ + ++ I +G G + Y
Sbjct: 61 VHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPC--VLQYLNFSTIIGVGVGAGAYILARY 118
Query: 78 AAMFPQLMDRLILLDA-------MNQRKTKVEDTLTKVRDILTNQMNLEEKLNNRTQPVY 130
A P ++ L+L++ M+ K+ + + +++ + +E+L+ +
Sbjct: 119 ALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNS---- 174
Query: 131 TKEQVVSKLKQRLLLNEISTESAEILFTRAVSARDGGFVFNFDQRLKNKIYLVMTEDQQH 190
+++ K + ++ + + ++ E+ + + RD F D L+ + LV+ + H
Sbjct: 175 ---ELIQKYR-NIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPH 230
Query: 191 SIIRNIQCQTLCILSQDSFNRVWIVNENYIGTYCLYSRHPKFHVEMVDSGHDMELEEPEK 250
++C + +Q SF ++M DSG +L +P K
Sbjct: 231 EDAV-VECNSKLDPTQTSF------------------------LKMADSGGQPQLTQPGK 265
Query: 251 LSGLISDFL 259
L+ FL
Sbjct: 266 LTEAFKYFL 274
>pdb|2XMR|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 101/249 (40%), Gaps = 46/249 (18%)
Query: 22 VCIDLPGHGLSSH-FPPGM---LLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHY 77
V +D PG + FP G LD L ++ C V+ + ++ I +G G + Y
Sbjct: 61 VHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPC--VLQYLNFSTIIGVGVGAGAYILARY 118
Query: 78 AAMFPQLMDRLILLDA-------MNQRKTKVEDTLTKVRDILTNQMNLEEKLNNRTQPVY 130
A P ++ L+L++ M+ K+ + + +++ + +E+L+ +
Sbjct: 119 ALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNS---- 174
Query: 131 TKEQVVSKLKQRLLLNEISTESAEILFTRAVSARDGGFVFNFDQRLKNKIYLVMTEDQQH 190
+++ K + ++ + + ++ E+ + + RD F D L+ + LV+ + H
Sbjct: 175 ---ELIQKYR-NIITHAPNLDNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPH 230
Query: 191 SIIRNIQCQTLCILSQDSFNRVWIVNENYIGTYCLYSRHPKFHVEMVDSGHDMELEEPEK 250
++C + +Q SF ++M DSG +L +P K
Sbjct: 231 EDAV-VECNSKLDPTQTSF------------------------LKMADSGGQPQLTQPGK 265
Query: 251 LSGLISDFL 259
L+ FL
Sbjct: 266 LTEAFKYFL 274
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 16 PARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLAC--HRVVNHFAWTKFIWLGHSLGGQL 73
PA+Y V D G G S+ P L+D + L R+ H ++ G S G L
Sbjct: 58 PAKYRIVLFDQRGSGRST--PHADLVDNTTWDLVADIERLRTHLGVDRWQVFGGSWGSTL 115
Query: 74 GTHYAAMFPQLMDRLILLDAMNQRKTKVE 102
YA PQ + L+L R+ ++E
Sbjct: 116 ALAYAQTHPQQVTELVLRGIFLLRRFELE 144
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 22 VCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAW---TKFIWL-GHSLGGQLGTHY 77
V D GHG S M + LN + + ++N+ + I+L GHS GG + +
Sbjct: 79 VRFDFNGHGDSDGKFENMTV--LNEIEDANAILNYVKTDPHVRNIYLVGHSQGGVVASML 136
Query: 78 AAMFPQLMDRLILL 91
A ++P L+ +++LL
Sbjct: 137 AGLYPDLIKKVVLL 150
>pdb|2XMQ|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/249 (19%), Positives = 100/249 (40%), Gaps = 46/249 (18%)
Query: 22 VCIDLPGHGLSSH-FPPGM---LLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHY 77
V +D PG + FP G LD L ++ C V+ + ++ I +G G + Y
Sbjct: 61 VHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPC--VLQYLNFSTIIGVGVGAGAYILARY 118
Query: 78 AAMFPQLMDRLILLDA-------MNQRKTKVEDTLTKVRDILTNQMNLEEKLNNRTQPVY 130
A P ++ L+L++ M+ K+ + + +++ + +E+L+ +
Sbjct: 119 ALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPEMILGHLFSQEELSGNS---- 174
Query: 131 TKEQVVSKLKQRLLLNEISTESAEILFTRAVSARDGGFVFNFDQRLKNKIYLVMTEDQQH 190
+++ K + ++ + + ++ E + + RD F D L+ + LV+ + H
Sbjct: 175 ---ELIQKYR-NIITHAPNLDNIENYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPH 230
Query: 191 SIIRNIQCQTLCILSQDSFNRVWIVNENYIGTYCLYSRHPKFHVEMVDSGHDMELEEPEK 250
++C + +Q SF ++M DSG +L +P K
Sbjct: 231 EDAV-VECNSKLDPTQTSF------------------------LKMADSGGQPQLTQPGK 265
Query: 251 LSGLISDFL 259
L+ FL
Sbjct: 266 LTEAFKYFL 274
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 10 KLLPLLPARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSL 69
+LL L Y V D GHG SS G +D +Y VV H + +GHS
Sbjct: 41 QLLFFLAHGYRVVAHDRRGHGRSSQVWDGHDMD--HYADDVAAVVAHLGIQGAVHVGHST 98
Query: 70 GGQLGTHYAAMFPQ 83
GG Y A P+
Sbjct: 99 GGGEVVRYMARHPE 112
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 22 VCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAW---TKFIWL-GHSLGGQLGTHY 77
V D GHG S M + LN + + ++N+ + I+L GH+ GG + +
Sbjct: 79 VRFDFNGHGDSDGKFENMTV--LNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASML 136
Query: 78 AAMFPQLMDRLILL 91
A ++P L+ +++LL
Sbjct: 137 AGLYPDLIKKVVLL 150
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 6 ASFDKLLPLLPARYYYVCIDLPGHGLSSHFPPGMLLD---WLNYLLACHRVVNHFAWTKF 62
A++ +P L Y + D+ G G + P W+++++ +++ K
Sbjct: 42 ANWRLTIPALSKFYRVIAPDMVGFGFTDR-PENYNYSKDSWVDHIIG---IMDALEIEKA 97
Query: 63 IWLGHSLGGQLGTHYAAMFPQLMDRLILLDAMNQR 97
+G+S GG L A + + +DR++L+ A+ R
Sbjct: 98 HIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTR 132
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 22 VCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAW---TKFIWL-GHSLGGQLGTHY 77
V D GHG S M + LN + + ++N+ + I+L GH+ GG + +
Sbjct: 79 VRFDFNGHGDSDGKFENMTV--LNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASML 136
Query: 78 AAMFPQLMDRLILL 91
A ++P L+ +++LL
Sbjct: 137 AGLYPDLIKKVVLL 150
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 23 CI--DLPGHGLSSHFPPG--MLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHYA 78
CI DL G G S G LLD YL A ++N K I++GH G L HYA
Sbjct: 72 CIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLN--LPKKIIFVGHDWGAALAFHYA 129
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 23 CI--DLPGHGLSSHFPPG--MLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHYA 78
CI DL G G S G LLD YL A ++N K I++GH G L HYA
Sbjct: 73 CIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLN--LPKKIIFVGHDWGAALAFHYA 130
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 23 CI--DLPGHGLSSHFPPG--MLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHYA 78
CI DL G G S G LLD YL A ++N K I++GH G L HYA
Sbjct: 73 CIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLN--LPKKIIFVGHDWGAALAFHYA 130
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 23 CI--DLPGHGLSSHFPPG--MLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHYA 78
CI DL G G S G LLD YL A ++N K I++GH G L HYA
Sbjct: 72 CIIPDLIGMGKSGKSGNGSYRLLDHYKYLTAWFELLN--LPKKIIFVGHDWGAALAFHYA 129
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 7 SFDKLLPLLPARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTKFIWLG 66
+F + + +L ++ + +D PG+G S + +A + + + +G
Sbjct: 74 NFSRNIAVLARHFHVLAVDQPGYGHSDKRAEHGQFNRYA-AMALKGLFDQLGLGRVPLVG 132
Query: 67 HSLGGQLGTHYAAMFPQLMDRLILL 91
+SLGG +A +P RL+L+
Sbjct: 133 NSLGGGTAVRFALDYPARAGRLVLM 157
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 17 ARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVV---NHFAWTKFIWLGHSLGGQL 73
A Y + +D+ G+G SS PP + + L C +V + ++ +++GH GG L
Sbjct: 284 AGYRVLAMDMKGYGESSA-PPEIEEYCMEVL--CKEMVTFLDKLGLSQAVFIGHDWGGML 340
Query: 74 GTHYAAMFPQLMDRLILLDAMNQRKTKVEDTLTKVRDILTN 114
+ A +P+ R+ + ++N ++ + I N
Sbjct: 341 VWYMALFYPE---RVRAVASLNTPFIPANPNMSPLESIKAN 378
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 79 AMFPQLMDRLILLD-AMNQRKTKVEDTLTKVRDILTNQMNLEEKLNNRTQPVYTKEQVVS 137
A+ PQL ++++LD + +T D + V + T ++L EKL + +Y +
Sbjct: 392 AVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSN-YTQTLDLFEKLCRNRRYLYVRLDGTM 450
Query: 138 KLKQRLLLNEISTESAEILFTRAVSARDGGFVFNF 172
+K+R + E + F +S++ GG N
Sbjct: 451 SIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL 485
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,746,526
Number of Sequences: 62578
Number of extensions: 305264
Number of successful extensions: 806
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 45
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)