RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16156
(260 letters)
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 83.2 bits (206), Expect = 1e-19
Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 9/154 (5%)
Query: 3 DNAASFDKLLPLLPARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTKF 62
+A S+ L L A Y + DLPGHG S PP + +++
Sbjct: 9 GSAESWRPLAEALAAGYRVLAPDLPGHGDSDG-PPRTPYSLEDDAADLAALLDALGLGPV 67
Query: 63 IWLGHSLGGQLGTHYAAMFPQLMDRLILLDAMNQR-KTKVEDTLTKVRDILT---NQMNL 118
+ +GHSLGG + AA P+ + L+L+ + + + + +L +L
Sbjct: 68 VLVGHSLGGAVALAAAARRPERVAGLVLISPPLRDLEELLAADAAALLALLRAALLDADL 127
Query: 119 EEKLNNRTQPVY----TKEQVVSKLKQRLLLNEI 148
E L T PV + +V R L +
Sbjct: 128 REALARLTVPVLVIHGEDDPLVPPEAARRLAEAL 161
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 75.4 bits (184), Expect = 5e-16
Identities = 47/264 (17%), Positives = 79/264 (29%), Gaps = 23/264 (8%)
Query: 4 NAASFDKLLPLLPA---RYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWT 60
+++ + + +LPA RY + DL GHG S + Y +++
Sbjct: 33 SSSVWRPVFKVLPALAARYRVIAPDLRGHGRSDPAGYSLS----AYADDLAALLDALGLE 88
Query: 61 KFIWLGHSLGGQLGTHYAAMFPQLMDRLILLDAMNQRKTKVEDTLTKVRDILTNQMNLEE 120
K + +GHS+GG + A P + L+L+ + L
Sbjct: 89 KVVLVGHSMGGAVALALALRHPDRVRGLVLIGP--------APPPGLLEAALRQPAGAAP 140
Query: 121 KLNNRTQPVYTKEQVVSKLKQRLLLNEISTESAEILFTRAVSARDGGFVFNFDQRLKNKI 180
+ + L L L +A A+ A G R
Sbjct: 141 LAALADLLLGLDAAAFAALLAALGLLAALAAAARAGLAEALRAPLLGAAAAAFARAARAD 200
Query: 181 YLVMTEDQQHSIIR----NIQCQTLCILSQDSFNRVWIVNENYIGTYCLYSRHPKFHVEM 236
+R I TL I +D +V + V +
Sbjct: 201 LAAALLALLDRDLRAALARITVPTLIIHGEDD----PVVPAELARRLAAALPNDARLVVI 256
Query: 237 VDSGHDMELEEPEKLSGLISDFLD 260
+GH LE PE + + FL+
Sbjct: 257 PGAGHFPHLEAPEAFAAALLAFLE 280
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 65.2 bits (159), Expect = 1e-12
Identities = 43/241 (17%), Positives = 90/241 (37%), Gaps = 21/241 (8%)
Query: 21 YVCIDLPGHGLSSH---FPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHY 77
+ DL G G SS F D L +++ K +GHS+GG + Y
Sbjct: 3 VIAFDLRGFGRSSPPKDFADYRFDDLAEDL---EALLDALGLDKVNLVGHSMGGLIALAY 59
Query: 78 AAMFPQLMDRLILLDAMNQRKTKVEDTLTKVRDILTNQM-NLEEKLNNRTQPVYTKEQVV 136
AA +P + L+L+ ++ + LT ++L + N +L + + + +
Sbjct: 60 AAKYPDRVKALVLVGTVH--PAGLSSPLTPRGNLLGLLLDNFFNRLYDSVEALLGRAIKQ 117
Query: 137 SKLKQRLLLNEISTESAEILFTRAVSARDGGFVFNFDQRLKNKIYLVMTEDQQHSIIRNI 196
+ R +++ + E+ + ++ + + +++I
Sbjct: 118 FQALGRPFVSDFLKQ-FELSSLIRFGETLALDGLLGYALGYDLVW------DRSAALKDI 170
Query: 197 QCQTLCILSQDSFNRVWIVNENYIGTYCLYSRHPKFHVEMVDSGHDMELEEPEKLSGLIS 256
TL I D +E L+ ++ D+GH +LE+P++++ LI
Sbjct: 171 DVPTLIIWGDDDPLVPPDASEKLAA---LFPNAQLVVID--DAGHLAQLEKPDEVAELIL 225
Query: 257 D 257
Sbjct: 226 K 226
>gnl|CDD|234315 TIGR03695, menH_SHCHC,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase. This protein catalyzes the formation of
SHCHC, or (1 R,6
R)-2-succinyl-6-hydroxy-2,
4-cyclohexadiene-1-carboxylate, by elmination of
pyruvate from
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate (SEPHCHC). Note that SHCHC synthase activity
previously was attributed to MenD, which in fact is
SEPHCHC synthase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 252
Score = 62.6 bits (153), Expect = 1e-11
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 4 NAASFDKLLPLLPARYYYVCIDLPGHGLSSHFPPGMLLDWLNYL--LACHRVVNHFAWTK 61
+ A + L+ LL + + IDLPGHG SS P + + L +++
Sbjct: 14 SGADWQALIELLGPHFRCLAIDLPGHG-SSQSPSDIERYDFEEIAQLLLATLLDQLGIEP 72
Query: 62 FIWLGHSLGGQLGTHYAAMFPQLMDRLIL 90
F +G+S+GG++ +YA +P+ + LIL
Sbjct: 73 FFLVGYSMGGRIALYYALQYPERVQGLIL 101
>gnl|CDD|130799 TIGR01738, bioH, pimelyl-[acyl-carrier protein] methyl ester
esterase. This CoA-binding enzyme is required for the
production of pimeloyl-coenzyme A, the substrate of the
BioF protein early in the biosynthesis of biotin. Its
exact function is unknown, but is proposed in ref 2.
This enzyme belongs to the alpha/beta hydrolase fold
family (Pfam model pfam00561). Members of this family
are restricted to the Proteobacteria [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 245
Score = 53.7 bits (129), Expect = 1e-08
Identities = 32/90 (35%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 4 NAASFDKLLPLLPARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTKFI 63
NA F L L A + +DLPGHG S F P L D A + A I
Sbjct: 16 NAEVFRCLDEELSAHFTLHLVDLPGHGRSRGFGPLSLAD------AAEAIAAQ-APDPAI 68
Query: 64 WLGHSLGGQLGTHYAAMFPQLMDRLILLDA 93
WLG SLGG + H AA P + L+ + +
Sbjct: 69 WLGWSLGGLVALHIAATHPDRVRALVTVAS 98
>gnl|CDD|131480 TIGR02427, protocat_pcaD, 3-oxoadipate enol-lactonase. Members of
this family are 3-oxoadipate enol-lactonase. Note that
the substrate is known as 3-oxoadipate enol-lactone,
2-oxo-2,3-dihydrofuran-5-acetate,
4,5-Dihydro-5-oxofuran-2-acetate, and
5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the
catalyzes the fourth step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. This enzyme also acts in catechol
degradation. In genomes that catabolize both catechol
and protocatechuate, two forms of this enzyme may be
found. All members of the seed alignment for this model
were chosen from within protocatechuate degradation
operons of at least three genes of the pathway, from
genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 251
Score = 51.6 bits (124), Expect = 8e-08
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 9 DKLLPLLPARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHS 68
D +LP L + + D GHGLS ++ L + +++H + ++ G S
Sbjct: 30 DPVLPALTPDFRVLRYDKRGHGLSDAPEGPYSIEDLADDVL--ALLDHLGIERAVFCGLS 87
Query: 69 LGGQLGTHYAAMFPQLMDRLILLD 92
LGG + AA P + L+L +
Sbjct: 88 LGGLIAQGLAARRPDRVRALVLSN 111
Score = 27.7 bits (62), Expect = 5.1
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 233 HVEMVDSGHDMELEEPEKLSGLISDFLD 260
E+ +GH +E+PE + + DFL
Sbjct: 224 FAEIRGAGHIPCVEQPEAFNAALRDFLR 251
>gnl|CDD|224932 COG2021, MET2, Homoserine acetyltransferase [Amino acid transport
and metabolism].
Length = 368
Score = 44.6 bits (106), Expect = 2e-05
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 19/96 (19%)
Query: 12 LPLLPARYYYVCIDLPGHGLSS---------------HFPPGMLLDWLNYLLACHRVVNH 56
P+ R++ +C ++ G S FP + D + A +++
Sbjct: 86 KPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITIRDMVR---AQRLLLDA 142
Query: 57 FAWTK-FIWLGHSLGGQLGTHYAAMFPQLMDRLILL 91
K +G S+GG +A +P + R I +
Sbjct: 143 LGIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPI 178
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 43.9 bits (104), Expect = 3e-05
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 24 IDLPGHGLSSHFPPGMLLDWLNYL-LACHRV---VNHFAWTKFIWLGHSLGGQLGTHYAA 79
+DL GHG S G + + +Y+ V LGHS+GG + Y A
Sbjct: 67 LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLA 126
Query: 80 MFPQLMDRLILL 91
+P +D L+L
Sbjct: 127 RYPPRIDGLVLS 138
>gnl|CDD|132100 TIGR03056, bchO_mg_che_rel, putative magnesium chelatase accessory
protein. Members of this family belong to the
alpha/beta fold family hydrolases (pfam00561). Members
are found in bacterial genomes if and only if they
encoded for anoxygenic photosynthetic systems similar to
that of Rhodobacter capsulatus and other
alpha-Proteobacteria. Members often are encoded in the
same operon as subunits of the protoporphyrin IX
magnesium chelatase, and were once designated BchO. No
literature supports a role as an actual subunit of
magnesium chelatase, but an accessory role is possible,
as suggested by placement by its probable hydrolase
activity [Energy metabolism, Photosynthesis].
Length = 278
Score = 43.0 bits (101), Expect = 7e-05
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 7 SFDKLLPLLPARYYYVCIDLPGHGLS---SHFPPGM--LLDWLNYLLACHRVVNHFAWTK 61
S+ L+P L + V DLPGHG + F + + + L+ L A +
Sbjct: 43 SWRDLMPPLARSFRVVAPDLPGHGFTRAPFRFRFTLPSMAEDLSALCA------AEGLSP 96
Query: 62 FIWLGHSLGGQLGTHYAAMFP 82
+GHS G + A P
Sbjct: 97 DGVIGHSAGAAIALRLALDGP 117
>gnl|CDD|236855 PRK11126, PRK11126,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase; Provisional.
Length = 242
Score = 40.6 bits (96), Expect = 3e-04
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 10 KLLPLLPARYYYVCIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSL 69
+ LP Y + IDLPGHG S+ D L + + + + +G+SL
Sbjct: 20 PVGEALPD-YPRLYIDLPGHGGSAAISVDGFADVSRLL---SQTLQSYNILPYWLVGYSL 75
Query: 70 GGQLGTHYAA--MFPQLM 85
GG++ +YA + L
Sbjct: 76 GGRIAMYYACQGLAGGLC 93
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This
family contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 37.4 bits (87), Expect = 0.002
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 4 NAASFDKLLPLLPARYYYV-CIDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTKF 62
+ ++ L L +R Y V +D PGHG S P L +
Sbjct: 11 DPEAYAPLARALASRGYNVVAVDYPGHGASLGAP--DAEAVLADAP--------LDPERI 60
Query: 63 IWLGHSLGGQLGTHYAAMFPQLMDRLILL 91
+ +GHSLGG + AA P++ ++L
Sbjct: 61 VLVGHSLGGGVALLLAARDPRVKAAVVLA 89
>gnl|CDD|182637 PRK10673, PRK10673, acyl-CoA esterase; Provisional.
Length = 255
Score = 38.2 bits (89), Expect = 0.002
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 15 LPARYYYVCIDLPGHGLSSHFP----PGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLG 70
L + + +D+ HGLS P P M D L+ L + K ++GHS+G
Sbjct: 39 LVNDHDIIQVDMRNHGLSPRDPVMNYPAMAQDLLDTL-------DALQIEKATFIGHSMG 91
Query: 71 GQLGTHYAAMFPQLMDRLILLD 92
G+ A+ P +D+L+ +D
Sbjct: 92 GKAVMALTALAPDRIDKLVAID 113
>gnl|CDD|236060 PRK07581, PRK07581, hypothetical protein; Validated.
Length = 339
Score = 37.6 bits (88), Expect = 0.004
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 14 LLPARYYYVCIDLPGHGLSS------------HFPPGMLLDWLNYLLACHRVV-NHFAWT 60
L P +Y+ + ++ G+GLSS FP + D + A HR++ F
Sbjct: 67 LDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVR---AQHRLLTEKFGIE 123
Query: 61 K-FIWLGHSLGGQLGTHYAAMFPQLMDRL 88
+ + +G S+G Q H+A +P +++R
Sbjct: 124 RLALVVGWSMGAQQTYHWAVRYPDMVERA 152
>gnl|CDD|211851 TIGR03611, RutD, pyrimidine utilization protein D. This protein is
observed in operons extremely similar to that
characterized in E. coli K-12 responsible for the import
and catabolism of pyrimidines, primarily uracil. This
protein is a member of the hydrolase, alpha/beta fold
family defined by pfam00067.
Length = 248
Score = 37.4 bits (87), Expect = 0.004
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 13/88 (14%)
Query: 12 LPLLPARYYYVCIDLPGHGLSSH-FPPG-----MLLDWLNYLLACHRVVNHFAWTKFIWL 65
L +L R++ V D G G S PP M D ++++ +F ++
Sbjct: 32 LAVLTQRFHVVTYDHRGTGRSPGELPPDYSIAHMADD-------VLQLLDALGIERFHFV 84
Query: 66 GHSLGGQLGTHYAAMFPQLMDRLILLDA 93
GH+LGG +G A +P+ + L+L++
Sbjct: 85 GHALGGLIGLQLALDYPERLTSLVLING 112
>gnl|CDD|215484 PLN02894, PLN02894, hydrolase, alpha/beta fold family protein.
Length = 402
Score = 35.3 bits (81), Expect = 0.024
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 61 KFIWLGHSLGGQLGTHYAAMFPQLMDRLILL 91
FI LGHS GG + YA P+ + LIL+
Sbjct: 177 NFILLGHSFGGYVAAKYALKHPEHVQHLILV 207
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit
dihydrolipoyllysine-residue acetyltransferase;
Provisional.
Length = 371
Score = 34.9 bits (81), Expect = 0.034
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 24 IDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHYAAMFPQ 83
+DLPGHG SS LD L + ++ + +GHS+GG + AA PQ
Sbjct: 163 LDLPGHGASSKAVGAGSLDELAAAVL--AFLDALGIERAHLVGHSMGGAVALRLAARAPQ 220
Query: 84 LMDRLILL 91
+ L L+
Sbjct: 221 RVASLTLI 228
>gnl|CDD|233393 TIGR01392, homoserO_Ac_trn, homoserine O-acetyltransferase. This
family describes homoserine-O-acetyltransferase, an
enzyme of methionine biosynthesis. This model has been
rebuilt to identify sequences more broadly, including a
number of sequences suggested to be homoserine
O-acetyltransferase based on proximity to other Met
biosynthesis genes [Amino acid biosynthesis, Aspartate
family].
Length = 351
Score = 33.8 bits (78), Expect = 0.065
Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 21/97 (21%)
Query: 12 LPLLPARYYYVCIDLPG--HG----LSSH---------FPPGMLLDWLNYLLACHR-VVN 55
+ RY+ VC ++ G +G S + FP + D + + +++
Sbjct: 66 RAIDTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIRDDVK----AQKLLLD 121
Query: 56 HFAWTK-FIWLGHSLGGQLGTHYAAMFPQLMDRLILL 91
H + +G S+GG +A +P+ + +++L
Sbjct: 122 HLGIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVL 158
>gnl|CDD|137836 PRK10349, PRK10349, carboxylesterase BioH; Provisional.
Length = 256
Score = 32.3 bits (73), Expect = 0.18
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 24 IDLPGHGLSSHFPPGMLLDWLNYLLACHRVVNHFAWTKFIWLGHSLGGQLGTHYAAMFPQ 83
+DLPG G S F L D +L A K IWLG SLGG + + A P+
Sbjct: 45 VDLPGFGRSRGFGALSLADMAEAVL-------QQAPDKAIWLGWSLGGLVASQIALTHPE 97
Query: 84 LMDRLI 89
+ L+
Sbjct: 98 RVQALV 103
>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated.
Length = 582
Score = 32.6 bits (75), Expect = 0.19
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 3 DNAASFDKLLPLLPARYYYVCIDLPGHGLSSH 34
DN +D + PLL R+ V D+ G G SS
Sbjct: 36 DNHEVWDGVAPLLADRFRVVAYDVRGAGRSSA 67
>gnl|CDD|235815 PRK06489, PRK06489, hypothetical protein; Provisional.
Length = 360
Score = 31.1 bits (71), Expect = 0.53
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 21/91 (23%)
Query: 13 PLLPARYYYVCIDLPGHGLSS--------HFPPGMLLDWLNYLLACHRV------VNHFA 58
PL ++Y+ + D GHG SS FP D+ + + A +R+ V H
Sbjct: 100 PLDASKYFIILPDGIGHGKSSKPSDGLRAAFPR---YDYDDMVEAQYRLVTEGLGVKHL- 155
Query: 59 WTKFIWLGHSLGGQLGTHYAAMFPQLMDRLI 89
+ I LG S+GG + +P MD L+
Sbjct: 156 --RLI-LGTSMGGMHAWMWGEKYPDFMDALM 183
>gnl|CDD|234416 TIGR03956, rSAM_HydE, [FeFe] hydrogenase H-cluster radical SAM
maturase HydE. This model describes the radical SAM
protein HydE, one of a pair of radical SAM proteins,
along with GTP-binding protein HydF, for maturation of
[Fe] hydrogenase in Chlamydomonas reinhardtii and
numerous bacteria [Protein fate, Protein modification
and repair].
Length = 340
Score = 30.6 bits (70), Expect = 0.74
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 132 KEQVVSKLKQRLLLNEISTESAEILFTRAVSARDGGFVFNFDQRLKNKIYL 182
KE +SK + + LL E AE LF A R + NK+Y+
Sbjct: 7 KEHTLSKEEFKRLLENRDEEDAEYLFELAREVR--------LRYYGNKVYI 49
>gnl|CDD|180820 PRK07064, PRK07064, hypothetical protein; Provisional.
Length = 544
Score = 30.3 bits (69), Expect = 1.2
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 165 DGGFVFNFD------QRLKNKIYLVMTEDQQHSIIRNIQ 197
DGG + N Q N + ++M D + +IRNIQ
Sbjct: 432 DGGLMLNLGELATAVQENANMVIVLMN-DGGYGVIRNIQ 469
>gnl|CDD|178419 PLN02824, PLN02824, hydrolase, alpha/beta fold family protein.
Length = 294
Score = 28.9 bits (65), Expect = 2.6
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 4 NAASFDKLLPLLPARYYYVCIDLPGHGLSS-----HFPPGMLL---DWLNYLLA-CHRVV 54
NA + K P+L + IDL G+G S PP W L C VV
Sbjct: 41 NADHWRKNTPVLAKSHRVYAIDLLGYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDVV 100
Query: 55 NHFAWTKFIWLGHSLGGQLGTHYAAMFPQLMDRLILLD 92
A F+ + +S+GG +G A P+L+ ++L++
Sbjct: 101 GDPA---FV-ICNSVGGVVGLQAAVDAPELVRGVMLIN 134
>gnl|CDD|112562 pfam03753, HHV6-IE, Human herpesvirus 6 immediate early protein.
The proteins in this family are poorly characterized,
but an investigation has indicated that the immediate
early protein is required the down-regulation of MHC
class I expression in dendritic cells. Human herpesvirus
6 immediate early protein is also referred to as U90.
Length = 993
Score = 29.3 bits (65), Expect = 2.8
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 12/62 (19%)
Query: 93 AMNQRKTKVEDTLTKVRDILTNQMNLEEKLNNRTQPVYTKEQVVSKLKQRLLLNEISTES 152
AM Q ++ +ED L +LTN ++ L + +L Q + +N +S+ S
Sbjct: 35 AMKQEQSDMEDCLINHAGLLTNDRSMLTDL------------ALEQLSQLININLLSSAS 82
Query: 153 AE 154
+
Sbjct: 83 SG 84
>gnl|CDD|226650 COG4187, RocB, Arginine degradation protein (predicted deacylase)
[Amino acid transport and metabolism].
Length = 553
Score = 29.0 bits (65), Expect = 2.8
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 24/136 (17%)
Query: 56 HFAWTKFIWLGHSLGGQLGTHYAAMFPQLMDRLILLDAMNQRKTKVEDTLTKVRDI---L 112
AW F WL HS + +L DRL + +T E+ + +RD
Sbjct: 296 ERAWLYFNWLYHSRTAK----------ELFDRLK-----EEAETAAEEAIETLRDRYEEY 340
Query: 113 TNQMNLEEKLNNRTQPVYTKEQVVSKLKQRLLLNEISTESA------EILFTRAVSARDG 166
+N V T ++++ + + R ++ E L R S +
Sbjct: 341 GKLVNRPAGPLPAKPRVLTFQELLERARVRGHIDAEYAEKEYEFAQNGELDLRLRSTQLT 400
Query: 167 GFVFNFDQRLKNKIYL 182
++ I L
Sbjct: 401 EWLVGLAGLSGPAIVL 416
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 28.3 bits (64), Expect = 3.4
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 102 EDTLTKVRDILTNQMNLEEKLNNRTQPVYTKEQVVSKL--KQRLLLNEISTESAE 154
+++L K + L + E++L R Q + KE+ + +L +Q+ L IS +AE
Sbjct: 98 DESLEKKEESLEEK---EKELAARQQQLEEKEEELEELIEEQQQELERISGLTAE 149
>gnl|CDD|206015 pfam13844, Glyco_transf_41, Glycosyl transferase family 41. This
family of glycosyltransferases includes O-linked
beta-N-acetylglucosamine (O-GlcNAc) transferase, an
enzyme which catalyzes the addition of O-GlcNAc to
serine and threonine residues. In addition to its
function as an O-GlcNAc transferase, human OGT, also
appears to proteolytically cleave the epigenetic
cell-cycle regulator HCF-1.
Length = 468
Score = 28.6 bits (64), Expect = 3.5
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 73 LGTHYAAMFPQLMDRLILLDAMNQRKTKVEDTLTKVRDILTNQMNLEEKLNNRTQPVYTK 132
+G H A MFP L +R+I+ N R I+ N ++L+ L+ +
Sbjct: 150 IGDH-AQMFPHLKERVIVKFKSNGRIYD--------NSIVINGIDLKPLLDKLEDVKIVR 200
Query: 133 EQVVSKLKQR 142
E+VV +R
Sbjct: 201 EKVVDAGSKR 210
>gnl|CDD|221767 pfam12776, Myb_DNA-bind_3, Myb/SANT-like DNA-binding domain. This
presumed domain appears to be related to other Myb/SANT
like DNA binding domains. In particular pfam10545 seems
most related. This family is greatly expanded in plants
and appears in several proteins annotated as transposon
proteins.
Length = 96
Score = 26.9 bits (60), Expect = 3.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 117 NLEEKLNNRTQPVYTKEQVVSKLKQR 142
N+ +K N +T YTK+Q+ ++
Sbjct: 36 NIVKKFNQKTGLKYTKDQLKNRWDTL 61
>gnl|CDD|165193 PHA02857, PHA02857, monoglyceride lipase; Provisional.
Length = 276
Score = 28.3 bits (63), Expect = 4.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 65 LGHSLGGQLGTHYAAMFPQLMDRLILLDAM 94
LGHS+G + A P L +IL+ +
Sbjct: 102 LGHSMGATISILAAYKNPNLFTAMILMSPL 131
>gnl|CDD|237387 PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional.
Length = 271
Score = 28.0 bits (63), Expect = 4.2
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 83 QLMDRLILLDAMNQRKT-KVEDTLTKVRDILTNQMNLEEKLNNRTQPVYTKEQVVSKLKQ 141
+L R +L A Q VED L ++ IL + L L++R P K +++++
Sbjct: 101 ELGVRALLASAEAQGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLAR--- 157
Query: 142 RLLLNEISTESAEILFTRAVSARDGG 167
LL T E L +AV G
Sbjct: 158 --LLYGKVTPVTERLAEQAVGRPRGR 181
>gnl|CDD|215504 PLN02934, PLN02934, triacylglycerol lipase.
Length = 515
Score = 28.2 bits (63), Expect = 4.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 13/38 (34%)
Query: 61 KFIWLGHSLGGQLGTHYAAMFP---------QLMDRLI 89
KF+ GHSLGG L A +FP ++M RL+
Sbjct: 322 KFVVTGHSLGGAL----AILFPTVLVLQEETEVMKRLL 355
>gnl|CDD|150144 pfam09371, Tex_N, Tex-like protein N-terminal domain. This
presumed domain is found at the N-terminus of Bordetella
pertussis tex. This protein defines a novel family of
prokaryotic transcriptional accessory factors.
Length = 193
Score = 27.4 bits (62), Expect = 5.7
Identities = 8/42 (19%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 83 QLMDRLILLDAMNQRKTKVEDTLTKVRDILTNQMNLEEKLNN 124
++ +RL L + +RK + ++ + + LT + L++ +
Sbjct: 46 EIEERLTYLRELEKRKETILKSIEE-QGKLTPE--LKKAIEA 84
>gnl|CDD|218651 pfam05600, DUF773, Protein of unknown function (DUF773). This
family contains several eukaryotic sequences which are
thought to be CDK5 activator-binding proteins, however,
the function of this family is unknown.
Length = 506
Score = 27.7 bits (62), Expect = 6.4
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 17/78 (21%)
Query: 96 QRKTKVEDTLTKVRDILTNQMNLEEKLNN-RTQ--------PVYTKEQVVSKLKQRLLLN 146
Q +V+ L++V +L +L N + Q P Y +++V L+Q+L
Sbjct: 396 QTPKRVQAMLSEVESLL-------SQLTNQQMQHLFMILASPRYV-DRLVETLEQKLKQE 447
Query: 147 EISTESAEILFTRAVSAR 164
+ E E++ + AR
Sbjct: 448 DKLKEKRELMTEKRQEAR 465
>gnl|CDD|188121 TIGR01250, pro_imino_pep_2, proline-specific peptidase, Bacillus
coagulans-type subfamily. This model describes a
subfamily of the alpha/beta fold family of hydrolases.
Characterized members include prolinases (Pro-Xaa
dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC
3.4.11.5), and a leucyl aminopeptidase.
Length = 289
Score = 27.3 bits (61), Expect = 7.0
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 53 VVNHFAWTKFIWLGHSLGGQLGTHYAAMFPQLMDRLIL 90
V KF LGHS GG L YA + Q + LI+
Sbjct: 90 VREKLGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLII 127
>gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase;
Provisional.
Length = 379
Score = 27.4 bits (61), Expect = 7.4
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 66 GHSLGGQLGTHYAAMFPQLMDRLILLDAMNQR--------KTKVEDTLTKVRDILTNQMN 117
G ++ + G A Q +R ++ DA N R + + + + DI+++ ++
Sbjct: 221 GSTILTEEGAVLAE-VRQARERGVIFDAANGRSHFDMNVARRAIANGF--LPDIISSDLS 277
Query: 118 LEEKLNNRTQPVYTKEQVVSK 138
+ PVY+ V+SK
Sbjct: 278 ---TITKLAWPVYSLPWVLSK 295
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 27.4 bits (61), Expect = 7.9
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 101 VEDTLTKV-RDILTNQMNLEEKLNNRTQPVYTKEQVVSKLKQRLLLNEISTE 151
++D L+ + + L+N N + +N + + + + SK +++L LN I E
Sbjct: 180 IDDKLSNIFNEKLSNLKNEKISINEKIKSILNEINPDSKFEKKLDLNLIKLE 231
>gnl|CDD|132386 TIGR03343, biphenyl_bphD, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase. Members of this family are
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or
HOPD hydrolase, the BphD protein of biphenyl
degradation. BphD acts on the product of ring
meta-cleavage by BphC. Many species carrying bphC and
bphD are capable of degrading polychlorinated biphenyls
as well as biphenyl itself.
Length = 282
Score = 27.2 bits (60), Expect = 8.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 65 LGHSLGGQLGTHYAAMFPQLMDRLILL 91
+G+S+GG ++A +P + +LIL+
Sbjct: 106 VGNSMGGATALNFALEYPDRIGKLILM 132
>gnl|CDD|227403 COG5071, RPN5, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 439
Score = 27.2 bits (60), Expect = 8.9
Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 11/102 (10%)
Query: 85 MDRLILLDAMNQRKTKVEDTLTKVRDILTNQMNLEEKLNNRTQPVYTKEQVVSKLKQRLL 144
+++L++ ++K + + +L +L L + EQ+VS K+
Sbjct: 32 LEKLLIF----EKKVRQASDTSTNTKVLIYIADL---LFSAGDFQGLNEQLVSLFKKHGQ 84
Query: 145 LNEISTESAEILFTRAVSARDGGFVFNFDQRLK----NKIYL 182
L + T + + D N + L+ KI++
Sbjct: 85 LKQSITSMIQHVMEYLKGIDDLKTKINLIETLRTVTEGKIFV 126
>gnl|CDD|165792 PLN00413, PLN00413, triacylglycerol lipase.
Length = 479
Score = 27.3 bits (60), Expect = 9.3
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 60 TKFIWLGHSLGGQLGTHYAAMF-----PQLMDRLILLDAMNQRKTKVEDTLTKVRDIL 112
+KFI GHSLGG L + A+ ++++RL + Q + ED ++D L
Sbjct: 284 SKFILSGHSLGGALAILFTAVLIMHDEEEMLERLEGVYTFGQPRVGDEDFGIFMKDKL 341
>gnl|CDD|221019 pfam11187, DUF2974, Protein of unknown function (DUF2974). This
bacterial family of proteins has no known function.
Length = 224
Score = 26.8 bits (60), Expect = 9.6
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 61 KFIWLGHSLGGQLGTHYAAMF--PQLMDRLI 89
GHS GG L YAAM P L DR+
Sbjct: 85 PIYLGGHSKGGNLA-VYAAMNAEPDLQDRIK 114
>gnl|CDD|177821 PLN02162, PLN02162, triacylglycerol lipase.
Length = 475
Score = 27.3 bits (60), Expect = 9.6
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 13/52 (25%)
Query: 61 KFIWLGHSLGGQLGTHYAAMFP---------QLMDRLILLDAMNQRKTKVED 103
K+I GHSLGG L AA+FP +L+D+L + Q + ED
Sbjct: 279 KYILTGHSLGGAL----AALFPAILAIHGEDELLDKLEGIYTFGQPRVGDED 326
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.421
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,308,205
Number of extensions: 1249854
Number of successful extensions: 1191
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1173
Number of HSP's successfully gapped: 56
Length of query: 260
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 165
Effective length of database: 6,723,972
Effective search space: 1109455380
Effective search space used: 1109455380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.3 bits)