BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16159
(175 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis
GN=chmp2b PE=2 SV=1
Length = 214
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/171 (53%), Positives = 118/171 (69%), Gaps = 2/171 (1%)
Query: 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
E+EIKK AK G+K A +LAKQL+Q+RKQKTRTYA KV S+ Q K M S +KMA AM
Sbjct: 43 EMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAM 102
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
TA TM+ +N M P++ + Q FQ+ +M MT+EMI++ LDD+ + SDDE+ES I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDDEEESQDI 162
Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
++QVL EIGIEISGKMA AP+ + G S S+SK+ SD EIE QL L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAAK--GLPSTSASKSSGISDEEIERQLKAL 211
>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis
GN=chmp2b-b PE=2 SV=1
Length = 214
Score = 166 bits (421), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/171 (53%), Positives = 119/171 (69%), Gaps = 2/171 (1%)
Query: 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
E+EIKK AK G+K A +LAKQL+Q+RKQKTRTYA KV S+ Q K M S +KMA AM
Sbjct: 43 EMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAM 102
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
TA TM+ +N M P++ + Q FQ+ +M MTDEMI++ LDD+ + S+DE+ES I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDASEDEEESQDI 162
Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
++QVL EIGIEISGKMA AP+ + G S S++K++ SD EIE QL L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAAK--GLPSTSAAKSKGISDEEIERQLKAL 211
>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B
PE=2 SV=1
Length = 214
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/171 (53%), Positives = 115/171 (67%), Gaps = 2/171 (1%)
Query: 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
ELEIKK AK G+K A +LAKQL+Q+RKQK RTYA KV S+ Q K M S +KMA AM
Sbjct: 43 ELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVMNSQMKMAGAM 102
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
TA TM+ +N M P++ + Q FQ+ +M MT+EMI++ LDD+ + SD+E+ES I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASDEEEESQDI 162
Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
++QVL EIGIEISGKMA AP S G S S+SK SD EIE QL L
Sbjct: 163 VNQVLDEIGIEISGKMAKAP--SAARGLPSASTSKASTISDEEIERQLKAL 211
>sp|Q7SYR0|CH2BA_XENLA Charged multivesicular body protein 2b-A OS=Xenopus laevis
GN=chmp2b-a PE=2 SV=1
Length = 214
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/171 (53%), Positives = 118/171 (69%), Gaps = 2/171 (1%)
Query: 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
E+EIKK AK G+K A +LAKQL+Q+RKQKTRTYA KV S+ Q K M S +KMA AM
Sbjct: 43 EMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMSSQMKMAGAM 102
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
TA TM+ +N M P++ + Q FQ+ +M MT+EMI++ LDD+ + S+DE+ES I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDASEDEEESQDI 162
Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
++QVL EIGIEISGKMA AP+ + G S S+SK+ SD EIE QL L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAAK--GLPSASASKSTGISDEEIERQLKAL 211
>sp|Q3SX42|CHM2B_BOVIN Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2
SV=1
Length = 213
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 91/171 (53%), Positives = 119/171 (69%), Gaps = 3/171 (1%)
Query: 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
ELEIKK AK G+K A +LAKQL+ +RKQKTRT+A KV S+ Q K M S +KMA AM
Sbjct: 43 ELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
TA TM+ +N M P++ + Q FQ+ +M MT+EMI++ LDD+ +GSDDE+ES I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI 162
Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
++QVL EIGIEISGKMA AP+ + + S S+SK+ + SD EIE QL L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAARSL--PSASTSKSTI-SDEEIERQLKAL 210
>sp|Q8BJF9|CHM2B_MOUSE Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b
PE=2 SV=1
Length = 213
Score = 163 bits (413), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/171 (53%), Positives = 118/171 (69%), Gaps = 3/171 (1%)
Query: 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
ELEIKK AK G+K A +LAKQL+ +RKQKTRT+A KV S+ Q K M S +KMA AM
Sbjct: 43 ELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
TA TM+ +N M P++ + Q FQ+ +M MT+EMI++ LDD+ +GSDDE+ES I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI 162
Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
++QVL EIGIEISGKMA AP+ + + S S+SK + SD EIE QL L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAARSL--PSASTSKATI-SDEEIERQLKAL 210
>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B
PE=2 SV=1
Length = 213
Score = 163 bits (413), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/171 (53%), Positives = 118/171 (69%), Gaps = 3/171 (1%)
Query: 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
ELEIKK AK G+K A +LAKQL+ +RKQKTRT+A KV S+ Q K M S +KMA AM
Sbjct: 43 ELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
TA TM+ +N M P++ + Q FQ+ +M MT+EMI++ LDD+ +GSDDE+ES I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI 162
Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
++QVL EIGIEISGKMA AP+ + + S S+SK + SD EIE QL L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAARSL--PSASTSKATI-SDEEIERQLKAL 210
>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B
PE=1 SV=1
Length = 213
Score = 163 bits (413), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 91/171 (53%), Positives = 118/171 (69%), Gaps = 3/171 (1%)
Query: 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
ELEIKK AK G+K A +LAKQL+ +RKQKTRT+A KV S+ Q K M S +KMA AM
Sbjct: 43 ELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVMNSQMKMAGAM 102
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
TA TM+ +N M P++ + Q FQ+ +M MT+EMI++ LDD+ +GSDDE+ES I
Sbjct: 103 STTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDGSDDEEESQDI 162
Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
++QVL EIGIEISGKMA AP+ + + S S+SK + SD EIE QL L
Sbjct: 163 VNQVLDEIGIEISGKMAKAPSAARSL--PSASTSKATI-SDEEIERQLKAL 210
>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b
PE=2 SV=1
Length = 214
Score = 156 bits (395), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 85/171 (49%), Positives = 117/171 (68%), Gaps = 2/171 (1%)
Query: 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
E+EIKK AK G++ A +LAKQL+Q+RKQKTRTYA KV S+ Q K M S +KMA AM
Sbjct: 43 EMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMNSQMKMAGAM 102
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
T TM+ +N M P++ + Q FQ+ +M+MT+EM+++ LD++ E S DE+ES I
Sbjct: 103 ATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDSGDEEESQDI 162
Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARL 172
++QVL EIGIEISGKMA+AP+ + K S +++K SD +IE QL L
Sbjct: 163 VNQVLDEIGIEISGKMAHAPSAARKT--PSAATAKADGISDEDIERQLKAL 211
>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium
discoideum GN=chmp2a2 PE=3 SV=1
Length = 198
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 95/159 (59%), Gaps = 5/159 (3%)
Query: 3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMK 62
L+IKK AK+G +A I+AK L++ R + Y + ++ ++ ++ +T+ S MAEAMK
Sbjct: 44 LDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMK 103
Query: 63 NTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKII 122
M MN M Q EF+Q +M+M +EM+++ +D ++E +E++S +I+
Sbjct: 104 GVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEIL 163
Query: 123 DQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPS 161
+QVL EIGI+++ ++ +APT G+ +SK QV S
Sbjct: 164 NQVLDEIGIDLASQLVDAPTTV-----GTSVASKHQVNS 197
>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3
OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
Length = 210
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Query: 3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMK 62
LEIK+ AK G++ A ILA+QLI++R+Q ++ ++ I + M ++ +A M+
Sbjct: 44 LEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIATHTQAMHAHTSVAAGMQ 103
Query: 63 NTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKII 122
M M+ M P + A +EFQ+ +M+MT EM+ +++DD L+ + E E+ +
Sbjct: 104 GATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLT 163
Query: 123 DQVLGEIGIEISGKMANAPTVSGKVG 148
+QVL EIGI+I+ ++++AP GK+G
Sbjct: 164 NQVLDEIGIDIASQLSSAP--KGKIG 187
>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2
OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2
Length = 222
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 85/138 (61%)
Query: 4 EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
EIKK AK G++ A ILA+QL+++R+Q T ++ ++ + + + ++ ++ MK
Sbjct: 45 EIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTTHTQALYASTSISSGMKG 104
Query: 64 TADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIID 123
M MN M P + A ++FQ+ +++MT EM+ EA+D+ L+ + E+E+ + +
Sbjct: 105 ATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTN 164
Query: 124 QVLGEIGIEISGKMANAP 141
QVL EIG+ ++ ++++AP
Sbjct: 165 QVLDEIGVGVASQLSSAP 182
>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a
PE=2 SV=1
Length = 220
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Query: 4 EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
+IKK AK+G A I+AK L++ R+ + + + ++ ++ +T+ SN MA+AMK
Sbjct: 46 DIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKG 105
Query: 64 TADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIID 123
M MN +K QI EF++ M+M +EM+++A+DD + DDE+ES+ ++
Sbjct: 106 VTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVS 165
Query: 124 QVLGEIGIEISGKMANAPTVSG--KVGEGSKSSSK-TQVPSDAEIEAQLARL 172
QVL E+G+ +S +++N P G V G K+ + T +DA++E +L L
Sbjct: 166 QVLDELGLTLSDELSNLPATGGSLSVAAGKKAEPQPTLADADADLEERLNNL 217
>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A
PE=1 SV=1
Length = 222
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 87/145 (60%)
Query: 4 EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
+IKK AK+G A I+AK L++ R+ + + + ++ ++ +T+ SN MA+AMK
Sbjct: 46 DIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKG 105
Query: 64 TADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIID 123
M MN +K QI EF++ M+M +EM+++A+DD + +DE+ES+ ++
Sbjct: 106 VTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVS 165
Query: 124 QVLGEIGIEISGKMANAPTVSGKVG 148
QVL E+G+ ++ +++N P+ G +
Sbjct: 166 QVLDELGLSLTDELSNLPSTGGSLS 190
>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a
PE=1 SV=1
Length = 222
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 87/144 (60%)
Query: 4 EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
+IKK AK+G A I+AK L++ R+ + + + ++ ++ +T+ SN MA+AMK
Sbjct: 46 DIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKG 105
Query: 64 TADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIID 123
M MN +K QI EF++ M+M +EM+++A+DD + +DE+ES+ ++
Sbjct: 106 VTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVS 165
Query: 124 QVLGEIGIEISGKMANAPTVSGKV 147
QVL E+G+ ++ +++N P+ G +
Sbjct: 166 QVLDELGLSLTDELSNLPSTGGSL 189
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1
OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
Length = 225
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 83/139 (59%)
Query: 4 EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
EIKK AK+G A ++AK LI+ R Q + Y + ++ + ++ +T+ S M EAMK
Sbjct: 47 EIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKG 106
Query: 64 TADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIID 123
M MN M + QEF++ +M M E++ +A+DD LEG ++E+E+ ++
Sbjct: 107 VTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVS 166
Query: 124 QVLGEIGIEISGKMANAPT 142
QVL EIGI+I+ ++ NAP+
Sbjct: 167 QVLDEIGIDINQELVNAPS 185
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a
PE=2 SV=1
Length = 220
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 87/145 (60%)
Query: 4 EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
+IKK AK+G A I+AK L++ R+ + + + ++ ++ +T+ SN MA+AMK
Sbjct: 46 DIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKG 105
Query: 64 TADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIID 123
M MN +K QI EF++ M+M +EM+++A+DD + DDE+ES+ ++
Sbjct: 106 VTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVS 165
Query: 124 QVLGEIGIEISGKMANAPTVSGKVG 148
QVL E+G+ ++ +++N P+ G +
Sbjct: 166 QVLDELGLTLTDELSNLPSTGGSLS 190
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis
GN=chmp2a PE=2 SV=1
Length = 220
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 87/145 (60%)
Query: 4 EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
+IKK AK+G A I+AK L++ R+ + + + ++ ++ +T+ SN MA+AMK
Sbjct: 46 DIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKG 105
Query: 64 TADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIID 123
M MN +K QI EF++ M+M +EM+++A+DD + DDE+ES+ ++
Sbjct: 106 VTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVS 165
Query: 124 QVLGEIGIEISGKMANAPTVSGKVG 148
QVL E+G+ ++ +++N P+ G +
Sbjct: 166 QVLDELGLTLTDELSNLPSTGGSLS 190
>sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1
OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1
Length = 229
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 68/108 (62%), Gaps = 6/108 (5%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEA---M 61
IK+AAK D ++A LAK+++ R+ R Y + +++SI + +G ++ +A +
Sbjct: 50 IKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMH---LGESVAIARTVGHL 106
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDML 109
+A+ MK +N++MK Q+AA+ QEF + +T+ + +E ++EA+D+ L
Sbjct: 107 SKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNAL 154
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A
PE=2 SV=1
Length = 220
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 80/139 (57%)
Query: 9 AKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTM 68
AK+G A I+AK L++ R+ + + V ++ ++ +T+ SN MA AMK M
Sbjct: 51 AKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAM 110
Query: 69 KNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGE 128
MN +K QI EF++ M+M +E++++A+DD + DDE+ES+ ++ QVL E
Sbjct: 111 ATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDE 170
Query: 129 IGIEISGKMANAPTVSGKV 147
+G+ ++ ++A P G +
Sbjct: 171 LGLNLTDELATLPPPGGSL 189
>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3
PE=2 SV=3
Length = 220
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 86/138 (62%), Gaps = 3/138 (2%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
IK++AK+G++ A ILAK+++Q +K + YA++ ++S+ + K + ++++ +++ +
Sbjct: 48 IKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKS 107
Query: 65 ADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQ 124
+ MK M +++K +I A+ +E + + + + +EM+++ + M + + E+++ ID+
Sbjct: 108 TEVMKAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDR 167
Query: 125 VLGEIGIEISGKMANAPT 142
+L E+ +G + AP+
Sbjct: 168 ILFEV---TAGALGKAPS 182
>sp|Q4R574|CHMP3_MACFA Charged multivesicular body protein 3 OS=Macaca fascicularis
GN=CHMP3 PE=2 SV=3
Length = 222
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 83/138 (60%), Gaps = 3/138 (2%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
+K AAK+G K +LAK++I+ RK ++ YA++ ++S+ + K + +++A +++ +
Sbjct: 48 VKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKS 107
Query: 65 ADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQ 124
+ MK M S++K +I A+ +E + + + + +EM+++ + M + + E+ + ID+
Sbjct: 108 TEVMKAMQSLVKIPEIRATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDR 167
Query: 125 VLGEIGIEISGKMANAPT 142
+L EI +G + AP+
Sbjct: 168 ILFEI---TAGALGKAPS 182
>sp|Q58CS7|CHMP3_BOVIN Charged multivesicular body protein 3 OS=Bos taurus GN=CHMP3 PE=2
SV=4
Length = 222
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 83/138 (60%), Gaps = 3/138 (2%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
+K AAK+G K +LAK++I+ RK ++ YA++ ++S+ + K + +++A +++ +
Sbjct: 48 VKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKS 107
Query: 65 ADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQ 124
+ MK M S++K +I A+ +E + + + + +EM+++ + M + + E+ + ID+
Sbjct: 108 TEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDR 167
Query: 125 VLGEIGIEISGKMANAPT 142
+L EI +G + AP+
Sbjct: 168 ILFEIT---AGALGKAPS 182
>sp|Q8CGS4|CHMP3_RAT Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Chmp3
PE=1 SV=3
Length = 223
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 83/138 (60%), Gaps = 3/138 (2%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
+K AAK+G K +LAK++I+ RK ++ YA++ ++S+ + K + +++A +++ +
Sbjct: 48 VKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKS 107
Query: 65 ADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQ 124
+ MK M S++K +I A+ +E + + + + +EM+++ + M + + E+ + ID+
Sbjct: 108 TEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDR 167
Query: 125 VLGEIGIEISGKMANAPT 142
+L EI +G + AP+
Sbjct: 168 ILFEI---TAGALGKAPS 182
>sp|Q9CQ10|CHMP3_MOUSE Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3 PE=1
SV=3
Length = 224
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 83/138 (60%), Gaps = 3/138 (2%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
+K AAK+G K +LAK++I+ RK ++ YA++ ++S+ + K + +++A +++ +
Sbjct: 48 VKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKS 107
Query: 65 ADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQ 124
+ MK M S++K +I A+ +E + + + + +EM+++ + M + + E+ + ID+
Sbjct: 108 TEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDR 167
Query: 125 VLGEIGIEISGKMANAPT 142
+L EI +G + AP+
Sbjct: 168 ILFEI---TAGALGKAPS 182
>sp|Q5RAU5|CHMP3_PONAB Charged multivesicular body protein 3 OS=Pongo abelii GN=CHMP3 PE=2
SV=3
Length = 222
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 84/138 (60%), Gaps = 3/138 (2%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
+K AAK+G K +LAK++I+ RK ++ YA++ ++S+ + K + +++A +++ +
Sbjct: 48 VKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKS 107
Query: 65 ADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQ 124
+ MK M S++K +I A+ +E + + + + +EM+++ + M + + E+E+ ID+
Sbjct: 108 TEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDR 167
Query: 125 VLGEIGIEISGKMANAPT 142
+L EI +G + AP+
Sbjct: 168 ILFEI---TAGALGKAPS 182
>sp|Q9Y3E7|CHMP3_HUMAN Charged multivesicular body protein 3 OS=Homo sapiens GN=CHMP3 PE=1
SV=3
Length = 222
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 84/138 (60%), Gaps = 3/138 (2%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
+K AAK+G K +LAK++I+ RK ++ YA++ ++S+ + K + +++A +++ +
Sbjct: 48 VKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKS 107
Query: 65 ADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQ 124
+ MK M S++K +I A+ +E + + + + +EM+++ + M + + E+E+ ID+
Sbjct: 108 TEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDR 167
Query: 125 VLGEIGIEISGKMANAPT 142
+L EI +G + AP+
Sbjct: 168 ILFEI---TAGALGKAPS 182
>sp|Q6NY88|CHMP3_DANRE Charged multivesicular body protein 3 OS=Danio rerio GN=chmp3 PE=2
SV=3
Length = 221
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 84/138 (60%), Gaps = 3/138 (2%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
IK AAK+G K ILAK++IQ ++ + YA++ +++S+ + K S +++A A++ +
Sbjct: 48 IKDAAKKGQKDVCIILAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKS 107
Query: 65 ADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQ 124
+ MK M S++K +I A+ ++ + + + + +EM+++ L+ M + + E+ + +D+
Sbjct: 108 TEVMKAMQSLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTLEGMDDEEEMEEAAEAEVDK 167
Query: 125 VLGEIGIEISGKMANAPT 142
+L EI +G + AP+
Sbjct: 168 ILFEIT---AGALGKAPS 182
>sp|Q9LXH5|VP242_ARATH Putative vacuolar protein sorting-associated protein 24 homolog 2
OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1
Length = 200
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 78/139 (56%), Gaps = 6/139 (4%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN- 63
IK + K D + A LA++++ R+ R Y + +V+SI + +G +I A + N
Sbjct: 21 IKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMH---LGESIATAVTVGNL 77
Query: 64 --TADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
+ + MK +NS+MK +IA + Q F + +T+ + +E + +A+D+ L+ D E+E +
Sbjct: 78 SKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVDNALDSEDIEEEIEEE 137
Query: 122 IDQVLGEIGIEISGKMANA 140
+D+VL I E + ++ A
Sbjct: 138 VDKVLTAIAGETAAELPEA 156
>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 OS=Xenopus tropicalis
GN=chmp3 PE=2 SV=4
Length = 220
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 85/138 (61%), Gaps = 3/138 (2%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
IK++AK+G++ A ILAK+++ +K + YA++ ++S+ + K + ++++ +++ +
Sbjct: 48 IKESAKKGNREACVILAKEVVHSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKS 107
Query: 65 ADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQ 124
+ MK M +++K +I A+ ++ + + + + +EM+++ + M + + E+++ ID+
Sbjct: 108 TEVMKAMQNLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDR 167
Query: 125 VLGEIGIEISGKMANAPT 142
+L EI +G + AP+
Sbjct: 168 ILFEI---TAGALGKAPS 182
>sp|O14177|DID4_SCHPO ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=did4 PE=3 SV=2
Length = 210
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Query: 4 EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
EIK +AK G+ AA I A+ L+++R + + A+ ++ +I ++ +TM ++ +M ++M+
Sbjct: 49 EIKGSAKAGNTGAARIQARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRG 108
Query: 64 TADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIID 123
+ MN M +A Q+F++ M EMIDE +DD DDE+E++++++
Sbjct: 109 ATRLLTGMNKSMNIPAMARITQQFERENEIMEQRQEMIDENMDDA-LEEDDEEEADELVN 167
Query: 124 QVLGEIGIEISGKMANAPTVSGKVGE 149
+VL EIG+++S + +A T G V E
Sbjct: 168 KVLDEIGVDLSQGLPDAATQIGTVPE 193
>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2
Length = 232
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 4 EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
EIKK+AK G AA + AK L++ R + + ++ +I ++ + + S+ +M +M
Sbjct: 49 EIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSE 108
Query: 64 TADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDML-EGSDDEQESNKII 122
+ MN M Q+ + EF++ M E +DEA+D+++ + D+++E+++I+
Sbjct: 109 ATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIV 168
Query: 123 DQVLGEIGIEISGKMANAP 141
++VL EIG++++ ++ + P
Sbjct: 169 NKVLDEIGVDLNSQLQSTP 187
>sp|P36095|VPS24_YEAST Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS24 PE=1
SV=1
Length = 224
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 75/132 (56%), Gaps = 11/132 (8%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKM---AEAM 61
IKK+AK+ D + AK+L QI KQ R Y ++ ++ S+ ++ + I+M + M
Sbjct: 49 IKKSAKKNDVRTVRLYAKELYQINKQYDRMYTSRAQLDSVRMK---IDEAIRMNTLSNQM 105
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALD---DMLEGSDD--EQ 116
++A M+ +NS+++ Q+ + E ++ + + + EM+D+ ++ D+ E D+ ++
Sbjct: 106 ADSAGLMREVNSLVRLPQLRNTMIELEKELMKSGIISEMVDDTMESVGDVGEEMDEAVDE 165
Query: 117 ESNKIIDQVLGE 128
E NKI++Q E
Sbjct: 166 EVNKIVEQYTNE 177
>sp|Q54P63|CHMP3_DICDI Charged multivesicular body protein 3 OS=Dictyostelium discoideum
GN=chmp3 PE=3 SV=1
Length = 207
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 82/145 (56%), Gaps = 19/145 (13%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
IK+ K GD+ +A LAK+++ RK K R Y A+ +++S+ +Q + SN+ M + N
Sbjct: 46 IKERVKAGDQKSAKTLAKEIVNSRKAKERIYTAKAQMNSVSMQ---LQSNLAMTKVQGNL 102
Query: 65 A---DTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQES--- 118
A + MK MN ++K ++ +T+ + +EMI + D ++G D E+E+
Sbjct: 103 AKSTEIMKMMNDLIKLPELNKVMMAMGSEMTKAGIMEEMISDVFD--MQGEDLEEEAEME 160
Query: 119 -NKIIDQVLGEIGIEISG-KMANAP 141
NKI+D++L +SG ++++AP
Sbjct: 161 VNKIMDEIL------VSGPQVSSAP 179
>sp|Q54GK9|CM2A1_DICDI Charged multivesicular body protein 2a homolog 1 OS=Dictyostelium
discoideum GN=chmp2a1 PE=3 SV=2
Length = 206
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 79/152 (51%), Gaps = 8/152 (5%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
IK+ AK G A +A L+++R Q R A + + ++ + T+ +N MA AM +
Sbjct: 47 IKQLAKAGRNDEAKRMANDLVKLRGQMERMRATKTTLSAVSTKTTTIKANQTMANAMASA 106
Query: 65 ADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQ 124
M MN Q+ + E+++ R+ MT+EM+ + E + ++E++ I+ +
Sbjct: 107 TKAMSTMNKQTDLVQLQKTMMEYEKQTQRVEMTEEMMQDM----FEDDEVDEEADDILSK 162
Query: 125 VLGEIGIEISGKMANAPTVSGK-VGEGSKSSS 155
V+ E+ ++ KM P+V+ K + SK+S+
Sbjct: 163 VVDEVCLDNYQKM---PSVAQKDLPYSSKTST 191
>sp|O14296|VPS24_SCHPO Vacuolar protein sorting-associated protein 24
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps24 PE=3 SV=1
Length = 231
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 71/127 (55%), Gaps = 6/127 (4%)
Query: 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAM 61
E+++K+ AK+ D ILAK++ + + R ++ + S+ +Q + +K+ M
Sbjct: 46 EVQLKQLAKQSDITNMRILAKEIARANRHGKRLAESKALLGSLSLQLNDQMAMLKIQGTM 105
Query: 62 KNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEAL------DDMLEGSDDE 115
+++ M++++S+++ Q++ + + +T+ + +EM DE +++++ +D++
Sbjct: 106 QSSTKIMQDVSSLIRLPQLSETMRNLSMELTKAGVLEEMRDEMFLPVEDDEELMDLADED 165
Query: 116 QESNKII 122
+E +I+
Sbjct: 166 EEVQEIL 172
>sp|P32984|RIR1_VAR67 Ribonucleoside-diphosphate reductase large subunit OS=Variola virus
(isolate Human/India/Ind3/1967) GN=I4L PE=2 SV=1
Length = 771
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 82 ASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAP 141
AS F G +R M+ + +DD +EG D + +I ++ G IG+ IS A+
Sbjct: 201 ASPTLFNAGTSRHQMSSCFLLNMMDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASGS 260
Query: 142 TVSGKVG 148
+SG G
Sbjct: 261 YISGTNG 267
>sp|P12848|RIR1_VACCW Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Western Reserve) GN=VACWR073 PE=1 SV=1
Length = 771
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 82 ASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAP 141
AS F G +R M+ + +DD +EG D + +I ++ G IG+ IS A+
Sbjct: 201 ASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASGS 260
Query: 142 TVSGKVG 148
+SG G
Sbjct: 261 YISGTNG 267
>sp|P20503|RIR1_VACCC Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Copenhagen) GN=I4L PE=2 SV=1
Length = 771
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 82 ASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAP 141
AS F G +R M+ + +DD +EG D + +I ++ G IG+ IS A+
Sbjct: 201 ASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASGS 260
Query: 142 TVSGKVG 148
+SG G
Sbjct: 261 YISGTNG 267
>sp|Q76RD8|RIR1_VACCA Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia
virus (strain Ankara) GN=MVA065L PE=2 SV=1
Length = 771
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 82 ASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAP 141
AS F G +R M+ + +DD +EG D + +I ++ G IG+ IS A+
Sbjct: 201 ASPTLFNAGTSRHQMSSCFLLNMIDDSIEGIYDTLKRCALISKMAGGIGLSISNIRASGS 260
Query: 142 TVSGKVG 148
+SG G
Sbjct: 261 YISGTNG 267
>sp|Q6NUD8|CHM1A_XENLA Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a
PE=2 SV=1
Length = 196
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 4 EIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKN 63
++KKA ++ + A + A+ I+ + + +V ++ + +T + M KN
Sbjct: 32 KVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTA---VTMKGVTKN 88
Query: 64 TADTMKNMN---SIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNK 120
A K ++ S M ++++A +F Q + +++ ++++++ + + +++ +
Sbjct: 89 MAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDN 148
Query: 121 IIDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARLLGS 175
+I Q+ E G+E+ ++ P + VGE SS++TQ E QL+R L S
Sbjct: 149 LIVQIAEENGLEVMDQLNQLPQGASSVGE---SSTRTQ-------EDQLSRRLAS 193
>sp|A6WSF1|HEM1_SHEB8 Glutamyl-tRNA reductase OS=Shewanella baltica (strain OS185)
GN=hemA PE=3 SV=1
Length = 416
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Query: 94 MNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPT 142
M + DE+++ AL+ + +GSD E QVL E+ ++ K+ +APT
Sbjct: 349 MAVKDELVERALNKLAQGSDTE--------QVLIELANRLTNKLIHAPT 389
>sp|A9L2D5|HEM1_SHEB9 Glutamyl-tRNA reductase OS=Shewanella baltica (strain OS195)
GN=hemA PE=3 SV=1
Length = 416
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Query: 94 MNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPT 142
M + DE+++ AL+ + +GSD E QVL E+ ++ K+ +APT
Sbjct: 349 MAVKDELVERALNKLAQGSDTE--------QVLIELANRLTNKLIHAPT 389
>sp|A3D0G0|HEM1_SHEB5 Glutamyl-tRNA reductase OS=Shewanella baltica (strain OS155 / ATCC
BAA-1091) GN=hemA PE=3 SV=1
Length = 416
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Query: 94 MNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPT 142
M + DE+++ AL+ + +GSD E QVL E+ ++ K+ +APT
Sbjct: 349 MAVKDELVERALNKLAQGSDTE--------QVLIELANRLTNKLIHAPT 389
>sp|B8E816|HEM1_SHEB2 Glutamyl-tRNA reductase OS=Shewanella baltica (strain OS223)
GN=hemA PE=3 SV=1
Length = 416
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 8/49 (16%)
Query: 94 MNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPT 142
M + DE+++ AL+ + +GSD E QVL E+ ++ K+ +APT
Sbjct: 349 MAVKDELVERALNKLAQGSDTE--------QVLIELANRLTNKLIHAPT 389
>sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a
PE=1 SV=1
Length = 196
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/158 (18%), Positives = 77/158 (48%), Gaps = 6/158 (3%)
Query: 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNT 64
+KKA ++ + A + A+ I+ + + +V ++ + +T + M KN
Sbjct: 33 VKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTA---VTMKGVTKNM 89
Query: 65 ADTMKNMN---SIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKI 121
A K ++ S M ++++A F+Q + +++ ++++++ + +++ + +
Sbjct: 90 AQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQEQVDSL 149
Query: 122 IDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQV 159
I Q+ E G+E+ +++ P + VGE S S + Q+
Sbjct: 150 IVQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQL 187
>sp|B7IPV1|SECA_BACC2 Protein translocase subunit SecA OS=Bacillus cereus (strain G9842)
GN=secA PE=3 SV=1
Length = 835
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 44 IGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKP---EQIAASAQEFQQGITRMNMTDEM 100
IGI K N + + M+ T + + + S +KP EQ+ EF++ +T+ D++
Sbjct: 2 IGILKKVFDVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDL 61
Query: 101 IDEALDDMLEGSDDEQESNKIIDQVLG--EIGIEISGKMA-NAPTVSG-KVGEGSKSSSK 156
+ EA + E + +VLG G+++ G +A + +S K GEG +S
Sbjct: 62 LPEAFAVVREAA----------TRVLGMRPYGVQLMGGIALHEGNISEMKTGEGKTLTST 111
Query: 157 TQVPSDA 163
V +A
Sbjct: 112 LPVYLNA 118
>sp|Q815G7|SECA_BACCR Protein translocase subunit SecA OS=Bacillus cereus (strain ATCC
14579 / DSM 31) GN=secA PE=3 SV=1
Length = 835
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 44 IGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKP---EQIAASAQEFQQGITRMNMTDEM 100
IGI K N + + M+ T + + + S +KP EQ+ EF++ +T+ D++
Sbjct: 2 IGILKKVFDVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDL 61
Query: 101 IDEAL 105
+ EA
Sbjct: 62 LPEAF 66
>sp|B7HEI8|SECA_BACC4 Protein translocase subunit SecA OS=Bacillus cereus (strain B4264)
GN=secA PE=3 SV=1
Length = 835
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 44 IGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKP---EQIAASAQEFQQGITRMNMTDEM 100
IGI K N + + M+ T + + + S +KP EQ+ EF++ +T+ D++
Sbjct: 2 IGILKKVFDVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDL 61
Query: 101 IDEAL 105
+ EA
Sbjct: 62 LPEAF 66
>sp|Q81X26|SECA1_BACAN Protein translocase subunit SecA 1 OS=Bacillus anthracis GN=secA1
PE=3 SV=1
Length = 835
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 44 IGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKP---EQIAASAQEFQQGITRMNMTDEM 100
IGI K N + + M+ T + + + S +KP EQ+ EF++ +T+ D++
Sbjct: 2 IGILKKVFDVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDL 61
Query: 101 IDEALDDMLEGSDDEQESNKIIDQVLG--EIGIEISGKMA-NAPTVSG-KVGEGSKSSSK 156
+ EA + E + +VLG G+++ G +A + +S K GEG +S
Sbjct: 62 LPEAFAVVREAA----------TRVLGMRPYGVQLMGGIALHEGNISEMKTGEGKTLTST 111
Query: 157 TQVPSDA 163
V +A
Sbjct: 112 LPVYLNA 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.122 0.308
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,862,808
Number of Sequences: 539616
Number of extensions: 2122697
Number of successful extensions: 8552
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 8444
Number of HSP's gapped (non-prelim): 156
length of query: 175
length of database: 191,569,459
effective HSP length: 110
effective length of query: 65
effective length of database: 132,211,699
effective search space: 8593760435
effective search space used: 8593760435
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)