Query psy16159
Match_columns 175
No_of_seqs 112 out of 623
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 22:18:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3230|consensus 100.0 3.7E-49 8.1E-54 311.1 20.9 174 1-174 42-223 (224)
2 KOG3231|consensus 100.0 7E-41 1.5E-45 258.7 19.0 168 1-174 41-208 (208)
3 KOG3229|consensus 100.0 6.3E-40 1.4E-44 260.6 17.9 138 2-142 45-182 (227)
4 KOG3232|consensus 100.0 1.1E-37 2.5E-42 242.0 21.2 166 3-174 37-202 (203)
5 PF03357 Snf7: Snf7; InterPro 99.8 1.5E-21 3.2E-26 151.8 6.9 140 1-142 27-168 (171)
6 COG5491 VPS24 Conserved protei 99.6 3.4E-14 7.4E-19 114.6 13.0 155 13-174 33-201 (204)
7 PTZ00464 SNF-7-like protein; P 99.2 2.1E-09 4.6E-14 87.6 16.6 123 5-129 44-173 (211)
8 KOG1656|consensus 99.2 2.2E-09 4.7E-14 86.1 16.1 130 3-132 46-180 (221)
9 PTZ00446 vacuolar sorting prot 98.8 2.8E-07 6E-12 74.1 15.3 114 4-125 56-173 (191)
10 COG5491 VPS24 Conserved protei 98.3 1.6E-05 3.5E-10 64.5 11.2 117 4-129 15-144 (204)
11 KOG2910|consensus 98.2 0.00054 1.2E-08 54.9 18.8 127 5-142 46-176 (209)
12 KOG2911|consensus 97.6 0.0036 7.8E-08 55.7 15.1 121 3-129 261-382 (439)
13 KOG1655|consensus 97.0 0.11 2.5E-06 41.9 15.9 114 14-130 58-175 (218)
14 PTZ00464 SNF-7-like protein; P 94.2 2.6 5.6E-05 34.5 16.2 97 34-133 73-173 (211)
15 PTZ00446 vacuolar sorting prot 93.6 3.2 6.9E-05 33.5 15.5 61 14-74 50-119 (191)
16 PRK10698 phage shock protein P 93.5 3.1 6.7E-05 34.1 12.8 88 2-89 72-170 (222)
17 PF03357 Snf7: Snf7; InterPro 93.0 0.11 2.4E-06 39.8 3.3 117 10-133 32-153 (171)
18 KOG3231|consensus 92.3 1.3 2.8E-05 35.1 8.4 108 28-137 61-173 (208)
19 KOG3230|consensus 89.7 9.3 0.0002 31.1 11.2 114 14-134 65-179 (224)
20 PF03398 Ist1: Regulator of Vp 88.5 0.42 9.1E-06 37.5 2.8 131 2-132 26-164 (165)
21 TIGR02977 phageshock_pspA phag 84.3 21 0.00045 29.0 14.5 92 2-93 72-174 (219)
22 KOG2910|consensus 82.0 26 0.00056 28.5 12.9 85 14-108 39-132 (209)
23 PF04012 PspA_IM30: PspA/IM30 81.1 27 0.00058 28.0 13.6 73 2-74 71-154 (221)
24 PF02583 Trns_repr_metal: Meta 78.2 20 0.00043 24.8 9.5 75 27-122 4-79 (85)
25 COG1937 Uncharacterized protei 74.6 28 0.0006 24.7 9.0 77 26-123 7-83 (89)
26 PRK15039 transcriptional repre 69.0 38 0.00083 24.0 8.7 48 27-74 8-55 (90)
27 PRK11352 regulator protein Frm 62.4 53 0.0011 23.2 9.4 48 27-74 8-55 (91)
28 PF07361 Cytochrom_B562: Cytoc 61.8 21 0.00045 25.7 4.7 33 3-35 70-102 (103)
29 PRK09720 cybC cytochrome b562; 60.4 21 0.00046 25.9 4.5 31 5-35 69-99 (100)
30 KOG1656|consensus 60.2 96 0.0021 25.5 13.4 111 17-129 52-173 (221)
31 KOG1655|consensus 59.9 95 0.0021 25.4 13.2 53 22-75 63-116 (218)
32 COG3783 CybC Soluble cytochrom 57.8 25 0.00053 25.4 4.4 31 3-33 67-97 (100)
33 PRK10698 phage shock protein P 38.4 1.8E+02 0.0039 23.7 7.3 64 28-95 123-186 (222)
34 PF00231 ATP-synt: ATP synthas 37.4 2.4E+02 0.0052 23.6 8.1 28 39-66 1-28 (290)
35 PF11464 Rbsn: Rabenosyn Rab b 37.3 98 0.0021 18.9 4.4 32 2-33 9-40 (42)
36 PRK15048 methyl-accepting chem 33.6 3.7E+02 0.008 24.4 16.2 29 7-35 383-419 (553)
37 KOG0038|consensus 32.4 56 0.0012 25.7 3.1 27 112-138 141-167 (189)
38 PF01601 Corona_S2: Coronaviru 32.2 1.4E+02 0.003 28.4 6.2 91 36-129 231-334 (610)
39 PRK05255 hypothetical protein; 32.2 2.6E+02 0.0055 22.2 9.2 84 7-94 19-102 (171)
40 PHA03188 UL14 tegument protein 28.9 3.2E+02 0.0068 22.2 12.5 75 28-109 58-132 (199)
41 PF04751 DUF615: Protein of un 28.8 2.8E+02 0.006 21.5 7.6 84 7-94 8-91 (157)
42 KOG2027|consensus 28.4 4.4E+02 0.0095 23.7 10.2 126 2-132 21-160 (388)
43 KOG3232|consensus 27.5 3.3E+02 0.0071 21.9 13.5 96 40-138 67-168 (203)
44 PF08653 DASH_Dam1: DASH compl 27.2 1.4E+02 0.0031 19.4 3.9 31 77-108 7-37 (58)
45 PRK05621 F0F1 ATP synthase sub 24.8 3.2E+02 0.007 22.8 6.8 28 40-67 3-30 (284)
46 TIGR03513 GldL_gliding gliding 24.2 4E+02 0.0086 21.7 12.5 55 17-74 98-152 (202)
47 PRK13426 F0F1 ATP synthase sub 23.1 1.3E+02 0.0028 25.5 4.1 27 40-66 3-29 (291)
48 PF13623 SurA_N_2: SurA N-term 22.6 2.7E+02 0.0059 21.2 5.4 55 74-133 48-106 (145)
49 PF09424 YqeY: Yqey-like prote 21.4 3.7E+02 0.008 20.4 9.6 37 88-132 74-110 (143)
50 PRK13423 F0F1 ATP synthase sub 21.3 4.4E+02 0.0094 22.2 7.0 28 40-67 3-30 (288)
51 COG1422 Predicted membrane pro 21.1 86 0.0019 25.6 2.5 18 77-94 74-91 (201)
52 PRK14127 cell division protein 21.0 3.4E+02 0.0074 19.8 5.8 13 161-173 86-98 (109)
No 1
>KOG3230|consensus
Probab=100.00 E-value=3.7e-49 Score=311.09 Aligned_cols=174 Identities=30% Similarity=0.497 Sum_probs=156.8
Q ss_pred CHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16159 1 QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQI 80 (175)
Q Consensus 1 l~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l 80 (175)
|+.+||+.||.|+++++||+||+|||+|+++.+|+.+|++|++|++++|+.+++..|+.+|+++|++|..||+.||+|++
T Consensus 42 lvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq~ 121 (224)
T KOG3230|consen 42 LVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQI 121 (224)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCCCC-CCCCCC---CCCCC-
Q psy16159 81 AASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPTVS-GKVGEG---SKSSS- 155 (175)
Q Consensus 81 ~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~~~-~~~~~~---~~~~~- 155 (175)
+++|++|+||++.||+.+|||+|++|++++++++|||+|++|+|||||||++++.+|.++|+.+ +.|... .....
T Consensus 122 qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~~~~~~~~a~~ig~~~a~~ 201 (224)
T KOG3230|consen 122 QKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQLSSLPSAAGSLPIAKTIGGKKAEA 201 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHcccHHHHhccCcccccccchhhccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999822 222211 11010
Q ss_pred ---CCCCCCHHHHHHHHHHhhC
Q psy16159 156 ---KTQVPSDAEIEAQLARLLG 174 (175)
Q Consensus 156 ---~~~~~~~ddL~~RL~~Lr~ 174 (175)
......+|||++||++||+
T Consensus 202 ~gs~~~~~~dddLqaRL~~Lrk 223 (224)
T KOG3230|consen 202 AGSEFHSDADDDLQARLDNLRK 223 (224)
T ss_pred cccccCCCchhHHHHHHHHHhc
Confidence 1123469999999999996
No 2
>KOG3231|consensus
Probab=100.00 E-value=7e-41 Score=258.69 Aligned_cols=168 Identities=50% Similarity=0.700 Sum_probs=157.0
Q ss_pred CHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16159 1 QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQI 80 (175)
Q Consensus 1 l~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l 80 (175)
|+.+||+.|+.|+.++||+|||+||.+|+|++|-|.+.+++.+++.|-..+.++.+|+++|+.++++|+.||+.|+++++
T Consensus 41 LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM~amNk~M~pek~ 120 (208)
T KOG3231|consen 41 LELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTMQAMNKKMDPEKT 120 (208)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHHHHHHccCCHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q psy16159 81 AASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVP 160 (175)
Q Consensus 81 ~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 160 (175)
..+|++|++..++|++.+|||+|++|+.+++++++||.+.+|+||||||||++++++.++|+...++..++. ..
T Consensus 121 ~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEisgKma~~P~a~s~~~~st~------ka 194 (208)
T KOG3231|consen 121 LQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEISGKMAKAPSARSLPSASTS------KA 194 (208)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcchhccCCccCCCCccccC------CC
Confidence 999999999999999999999999999999999999999999999999999999999999973333333322 24
Q ss_pred CHHHHHHHHHHhhC
Q psy16159 161 SDAEIEAQLARLLG 174 (175)
Q Consensus 161 ~~ddL~~RL~~Lr~ 174 (175)
..+|+++.|++||+
T Consensus 195 t~~Die~QLa~Lrs 208 (208)
T KOG3231|consen 195 TISDIERQLAALRS 208 (208)
T ss_pred cHHHHHHHHHHhcC
Confidence 78899999999985
No 3
>KOG3229|consensus
Probab=100.00 E-value=6.3e-40 Score=260.58 Aligned_cols=138 Identities=30% Similarity=0.523 Sum_probs=131.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy16159 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIA 81 (175)
Q Consensus 2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~ 81 (175)
+..||++||+||+++||||||++|+.|+++.|+|..||||+||+|+|..+.++..++++|.++|++|+.||+++++|+|.
T Consensus 45 ~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~ 124 (227)
T KOG3229|consen 45 QKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELA 124 (227)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCC
Q psy16159 82 ASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPT 142 (175)
Q Consensus 82 ~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~ 142 (175)
.||.+|++||+|+||++||++|+|+++.|.++.++++|++|++||.+|. ++.++++|.
T Consensus 125 ~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it---~~~~~~~p~ 182 (227)
T KOG3229|consen 125 ATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEIT---GEKAGEAPL 182 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHh---ccccccCCc
Confidence 9999999999999999999999999999888899999999999999996 555555554
No 4
>KOG3232|consensus
Probab=100.00 E-value=1.1e-37 Score=242.03 Aligned_cols=166 Identities=18% Similarity=0.300 Sum_probs=151.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy16159 3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAA 82 (175)
Q Consensus 3 ~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~ 82 (175)
.++|+|+++||++.|||||.+.||.|++..+|+++.+++++|..|+||+.++.+++++|.++++.|....+.||+++|+.
T Consensus 37 ~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~alktmNLekis~ 116 (203)
T KOG3232|consen 37 AKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDSALKTMNLEKISQ 116 (203)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCH
Q psy16159 83 SAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSD 162 (175)
Q Consensus 83 ~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 162 (175)
+|+.|+++|+.+++..++|+++|.+....+.|++++|.++.+|+||+|++++..||....++.+.+++.. ..++
T Consensus 117 ~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGlElnq~lp~~~~~a~~~~t~~~------~~e~ 190 (203)
T KOG3232|consen 117 LMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGLELNQELPQNVVPAISVKTSAV------VDEE 190 (203)
T ss_pred HHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhchhhhhcCCCCCCCCcCCCCccc------cchh
Confidence 9999999999999999999999999988889999999999999999999999999866433222232222 2345
Q ss_pred HHHHHHHHHhhC
Q psy16159 163 AEIEAQLARLLG 174 (175)
Q Consensus 163 ddL~~RL~~Lr~ 174 (175)
|||..||++||.
T Consensus 191 d~L~qRLaaLR~ 202 (203)
T KOG3232|consen 191 DDLTQRLAALRA 202 (203)
T ss_pred hHHHHHHHHHhc
Confidence 999999999996
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.85 E-value=1.5e-21 Score=151.80 Aligned_cols=140 Identities=23% Similarity=0.360 Sum_probs=109.9
Q ss_pred CHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16159 1 QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQI 80 (175)
Q Consensus 1 l~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l 80 (175)
+..+||+++++|++..|++|++..++.+++..+++.+..+|+.+..+++++..+..+..+|+.++++|+.+|+.++++++
T Consensus 27 ~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~Lk~~~~~i~~~~v 106 (171)
T PF03357_consen 27 LEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKALKKINKQINLDKV 106 (171)
T ss_dssp CHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHHHHHHHHSTTSCCH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhh--hhhccCCCC
Q psy16159 81 AASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEI--SGKMANAPT 142 (175)
Q Consensus 81 ~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~--~~~l~~~p~ 142 (175)
..+|++|..++++++.++++|.+.++.. .+.+++|.+++++++++|++.+. ...||.+|+
T Consensus 107 ~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~~~~~lp~~P~ 168 (171)
T PF03357_consen 107 EKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEEEKQQLPSVPS 168 (171)
T ss_dssp HHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS--SS-SS---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhhccccCCcCCC
Confidence 9999999999999999999999998764 33456789999999999999877 667777665
No 6
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=99.58 E-value=3.4e-14 Score=114.61 Aligned_cols=155 Identities=21% Similarity=0.290 Sum_probs=109.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHH
Q psy16159 13 DKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMK-PEQIAASAQEFQQGI 91 (175)
Q Consensus 13 ~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~-~~~l~~~M~ef~ke~ 91 (175)
+....++|++.+++.|++..|+...+++|+++...+.... +|..+++.|..++..|| ++.|.++|+.|+..+
T Consensus 33 ~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~-------~m~~v~~~~~~a~~~mnel~~i~ri~~~~et~~ 105 (204)
T COG5491 33 KAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKV-------VMRQVSGDMAKAAMYMNELESIRRIMQLFETQF 105 (204)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777666665555 55666666777777778 899999999999999
Q ss_pred HHhhhhH---HHHHHHhhhhcC--CCCchHHHHHHHHHHHHHhchhhhhhccCCCC----CCCCCCCCC----CCCCCCC
Q psy16159 92 TRMNMTD---EMIDEALDDMLE--GSDDEQESNKIIDQVLGEIGIEISGKMANAPT----VSGKVGEGS----KSSSKTQ 158 (175)
Q Consensus 92 ~~~~i~~---emm~d~~d~~~~--~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~----~~~~~~~~~----~~~~~~~ 158 (175)
.-|++.. |+|.+.++...+ ..++.+++|++|++|++|+|+++.....+.|. +...|+... .+-+...
T Consensus 106 ~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~~~~~~~~~~~~~~a~~~~ea~~ileea~ 185 (204)
T COG5491 106 LALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQSLPANVVENGSVPAAVSPEARKILEEAE 185 (204)
T ss_pred HHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhhcchhhhhcccccccccChhhhhhHHHHH
Confidence 9999988 788777777664 44567899999999999999999855555554 111111111 1000011
Q ss_pred CCCHHHHHHHHHHhhC
Q psy16159 159 VPSDAEIEAQLARLLG 174 (175)
Q Consensus 159 ~~~~ddL~~RL~~Lr~ 174 (175)
...++.|..||..|++
T Consensus 186 ~~aE~~l~e~~~~L~~ 201 (204)
T COG5491 186 KIAEDRLQERLRELPA 201 (204)
T ss_pred hhHHHHHHHHHHhccc
Confidence 2458899999999874
No 7
>PTZ00464 SNF-7-like protein; Provisional
Probab=99.18 E-value=2.1e-09 Score=87.59 Aligned_cols=123 Identities=16% Similarity=0.155 Sum_probs=98.7
Q ss_pred HHHHHHcCCh---HHHHHHHHHHHHHHHHH----HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16159 5 IKKAAKEGDK---IAATILAKQLIQIRKQK----TRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKP 77 (175)
Q Consensus 5 IKkaakkg~~---~~arilAk~lvr~Rk~~----~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~ 77 (175)
.|+.++++.- ...|.-|..+.|.||.. .+++....+|+.+...|..+..+..+..+|+..+++|+.+|+.|++
T Consensus 44 ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~i 123 (211)
T PTZ00464 44 LKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNV 123 (211)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 4455554422 23578888899888744 4688889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHh
Q psy16159 78 EQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEI 129 (175)
Q Consensus 78 ~~l~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~ 129 (175)
.++..+|.++..+++..+=+++++...++.. .+.+|+|.+++++.+..|.
T Consensus 124 d~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~--~~~DEdELe~ELe~Le~e~ 173 (211)
T PTZ00464 124 DKVEDLQDELADLYEDTQEIQEIMGRAYDVP--DDIDEDEMLGELDALDFDM 173 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988765321 1234566777777666665
No 8
>KOG1656|consensus
Probab=99.18 E-value=2.2e-09 Score=86.15 Aligned_cols=130 Identities=14% Similarity=0.193 Sum_probs=100.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q psy16159 3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQ---NKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQ 79 (175)
Q Consensus 3 ~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~---l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~ 79 (175)
.++...|++.-...-|.--..|-|.|..-..|.+.-..|..+..| |.++.++..+..+|+..+++|+.+.+-||+.+
T Consensus 46 ~e~e~~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDk 125 (221)
T KOG1656|consen 46 QEVENNARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDK 125 (221)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhH
Confidence 345666777777766665556666666666666666666666665 78899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhh--hhcCCCCchHHHHHHHHHHHHHhchh
Q psy16159 80 IAASAQEFQQGITRMNMTDEMIDEALD--DMLEGSDDEQESNKIIDQVLGEIGIE 132 (175)
Q Consensus 80 l~~~M~ef~ke~~~~~i~~emm~d~~d--~~~~~~~~eee~d~~v~qVl~E~gl~ 132 (175)
+..+|++...|.+.+.-+++.++..+. ..+|+++...|-+++=+..|+.--++
T Consensus 126 Vdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~ 180 (221)
T KOG1656|consen 126 VDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLD 180 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999985 23665555566666666666654333
No 9
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=98.83 E-value=2.8e-07 Score=74.08 Aligned_cols=114 Identities=17% Similarity=0.198 Sum_probs=88.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q psy16159 4 EIKKAAKEGDKIAATILAKQLIQIRK----QKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQ 79 (175)
Q Consensus 4 ~IKkaakkg~~~~arilAk~lvr~Rk----~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~ 79 (175)
..|+.+++|+... |..+.|.|| +..+++.....|+.+...|..+..+..+..+|+..+++|+.+|+.|++.+
T Consensus 56 ~Ak~~~~~~kk~~----Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~k~~~idk 131 (191)
T PTZ00446 56 EAKQKVEQNQMSN----AKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLNNEINTQK 131 (191)
T ss_pred HHHHHHHcccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 4466777777554 666666665 44566677778888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q psy16159 80 IAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQV 125 (175)
Q Consensus 80 l~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qV 125 (175)
+..+|.++..+++..+=+++++...+.+.. +|+|.+++++..
T Consensus 132 Vd~lmDei~E~~e~~~EIseaLs~~~~~~~----DEdELe~ELe~L 173 (191)
T PTZ00446 132 VEKIIDTIQENKDIQEEINQALSFNLLNNV----DDDEIDKELDLL 173 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CHHHHHHHHHHH
Confidence 999999999999999888888875432222 344555554443
No 10
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=98.25 E-value=1.6e-05 Score=64.46 Aligned_cols=117 Identities=16% Similarity=0.213 Sum_probs=72.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy16159 4 EIKKAAKEGDKIAATILAKQLIQIRKQKT--RTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIA 81 (175)
Q Consensus 4 ~IKkaakkg~~~~arilAk~lvr~Rk~~~--~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~ 81 (175)
.+|.-.++|.....++-.+.-.+.|.... ++..++++|+.+.+||++..+ +-.-.-+|..+-..|... .
T Consensus 15 ~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~-------~~~e~~~m~~v~~~~~~a--~ 85 (204)
T COG5491 15 ELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDT-------MLFEKVVMRQVSGDMAKA--A 85 (204)
T ss_pred hhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhccHHHH--H
Confidence 45666666665554444455555555555 999999999999999998773 334456777777775444 4
Q ss_pred HHHH------HHHHHHHHhhhhHHHHH---HHhhhhcCCCC--chHHHHHHHHHHHHHh
Q psy16159 82 ASAQ------EFQQGITRMNMTDEMID---EALDDMLEGSD--DEQESNKIIDQVLGEI 129 (175)
Q Consensus 82 ~~M~------ef~ke~~~~~i~~emm~---d~~d~~~~~~~--~eee~d~~v~qVl~E~ 129 (175)
.+|+ .+.+.|+.+-..=|.+. +.++..++... +..+..+.++..+..+
T Consensus 86 ~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v 144 (204)
T COG5491 86 MYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKV 144 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhh
Confidence 4444 46667777766666666 45554444433 3444445555555544
No 11
>KOG2910|consensus
Probab=98.22 E-value=0.00054 Score=54.92 Aligned_cols=127 Identities=13% Similarity=0.271 Sum_probs=85.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16159 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRT-YAAQGKVHSIGIQ---NKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQI 80 (175)
Q Consensus 5 IKkaakkg~~~~arilAk~lvr~Rk~~~~l-~~~ka~l~sv~~~---l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l 80 (175)
.|++++.|+.+-|+.+- +.++....| -+..-||..+.-. |.-..-..++...++.=+.+++++|+.|++..+
T Consensus 46 Ar~lird~rKdrAlllL----KkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~lkkl~~~~~ideV 121 (209)
T KOG2910|consen 46 ARDLIRDGRKDRALLLL----KKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEALKKLQQEFDIDEV 121 (209)
T ss_pred HHHHHHhChHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34555555555544432 223333322 2333344443333 333344456777888888999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCC
Q psy16159 81 AASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPT 142 (175)
Q Consensus 81 ~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~ 142 (175)
.++|++-....+--+=+++|+.+.|.. ++++++.++++-+..|.-.+ .++|.+|+
T Consensus 122 ~rimddt~ea~~YQ~Ein~~L~~~ls~-----~dEddi~~EldaLese~~~e--~e~PevPs 176 (209)
T KOG2910|consen 122 DRIMDDTQEAIEYQDEINAILSGSLSA-----EDEDDILAELDALESELEVE--AELPEVPS 176 (209)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccc-----ccHHHHHHHHHHHHHHhhhh--hhcCCCCC
Confidence 999999999999999999999998873 34566777777776666433 57888887
No 12
>KOG2911|consensus
Probab=97.60 E-value=0.0036 Score=55.73 Aligned_cols=121 Identities=16% Similarity=0.206 Sum_probs=94.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHH
Q psy16159 3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNS-IMKPEQIA 81 (175)
Q Consensus 3 ~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~-~m~~~~l~ 81 (175)
.+.+.+.|.|....|..|.+.--+.-|...+....--+|.+|-.++.++.++.-+..+++.-+.+|+.++. -...+++.
T Consensus 261 ~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVe 340 (439)
T KOG2911|consen 261 EKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVE 340 (439)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999 45567788
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHh
Q psy16159 82 ASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEI 129 (175)
Q Consensus 82 ~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~ 129 (175)
.+|.+...-+..-. -++++|.+.+.... +..|+.+.|=|+++
T Consensus 341 d~Ldev~et~d~~~----EV~~~la~~~~~~~--d~~de~lEkEL~~L 382 (439)
T KOG2911|consen 341 DVLDEVNETLDRQE----EVEDALASYNVNNI--DFEDEDLEKELEDL 382 (439)
T ss_pred HHHHHHHHHHhhHH----HHHHHHhcCCCCCC--ccchHHHHHHHHHH
Confidence 99988877666544 44555554433211 22334444444444
No 13
>KOG1655|consensus
Probab=96.98 E-value=0.11 Score=41.95 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy16159 14 KIAATILAKQLIQIRKQ----KTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQ 89 (175)
Q Consensus 14 ~~~arilAk~lvr~Rk~----~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~ef~k 89 (175)
..+.|--|=.+++.||. ...|+.-.-.|+.+++-.++..-+.....+|+...+.|+...+.+|+.+|...=+++.-
T Consensus 58 q~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnId~IedlQDem~D 137 (218)
T KOG1655|consen 58 QNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNIDKIEDLQDEMED 137 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 34455555555555543 33455555667777777788888888889999999999999999999999887777777
Q ss_pred HHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhc
Q psy16159 90 GITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIG 130 (175)
Q Consensus 90 e~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~g 130 (175)
=|+..+=++|.+....+.- +.+|++.+.+++-..+|..
T Consensus 138 lmd~a~EiQE~Lgr~y~~p---eide~dL~aELdaL~~E~d 175 (218)
T KOG1655|consen 138 LMDQADEIQEVLGRNYNTP---DIDEADLDAELDALGQELD 175 (218)
T ss_pred HHHHHHHHHHHHhhccCCC---CcCHHHHHHHHHHHHhHhh
Confidence 7777788888888776542 2456677777777766653
No 14
>PTZ00464 SNF-7-like protein; Provisional
Probab=94.20 E-value=2.6 Score=34.46 Aligned_cols=97 Identities=6% Similarity=0.077 Sum_probs=53.4
Q ss_pred HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH--hhhhcCC
Q psy16159 34 TYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEA--LDDMLEG 111 (175)
Q Consensus 34 l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~ef~ke~~~~~i~~emm~d~--~d~~~~~ 111 (175)
|-....++......|..+..+...+..=..+..+|+..|+. +..+.+-| ..++-=.-++=+.|+|+.. +.+++..
T Consensus 73 ~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~ka--LK~~~k~i-~id~Vd~l~Dei~E~~e~~~EI~e~Ls~ 149 (211)
T PTZ00464 73 YQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKT--LKKQFKKL-NVDKVEDLQDELADLYEDTQEIQEIMGR 149 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344455556666666666666666666677778777777 44444433 2222222223333333322 3334433
Q ss_pred CC--chHHHHHHHHHHHHHhchhh
Q psy16159 112 SD--DEQESNKIIDQVLGEIGIEI 133 (175)
Q Consensus 112 ~~--~eee~d~~v~qVl~E~gl~~ 133 (175)
.. +.+.-+.++..-|+++.-++
T Consensus 150 ~~~~~~~~DEdELe~ELe~Le~e~ 173 (211)
T PTZ00464 150 AYDVPDDIDEDEMLGELDALDFDM 173 (211)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH
Confidence 21 34566778888888888775
No 15
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=93.64 E-value=3.2 Score=33.52 Aligned_cols=61 Identities=11% Similarity=0.011 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16159 14 KIAATILAKQLIQIRK---------QKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSI 74 (175)
Q Consensus 14 ~~~arilAk~lvr~Rk---------~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~ 74 (175)
++.....|+.+++..+ .+..|-..-.++.+....|.++..+...+..=..+..+|+..|+.
T Consensus 50 Ie~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~a 119 (191)
T PTZ00446 50 IKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANT 119 (191)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666665443 233333444555555666666666666665556666667766666
No 16
>PRK10698 phage shock protein PspA; Provisional
Probab=93.50 E-value=3.1 Score=34.14 Aligned_cols=88 Identities=7% Similarity=0.101 Sum_probs=57.3
Q ss_pred HHHHHHHHHcCChHHHHH-------HHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy16159 2 ELEIKKAAKEGDKIAATI-------LAKQLIQIRKQKTRTY----AAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKN 70 (175)
Q Consensus 2 ~~~IKkaakkg~~~~ari-------lAk~lvr~Rk~~~~l~----~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~ 70 (175)
+.+...|+.+|+-+-||- |+..+-..+.+....- .++.++..+..++..+.+-...--+=..++.+..+
T Consensus 72 e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~ 151 (222)
T PRK10698 72 QEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD 151 (222)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678999999999999 8888887776655443 34555666666666666665555555566666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q psy16159 71 MNSIMKPEQIAASAQEFQQ 89 (175)
Q Consensus 71 ~n~~m~~~~l~~~M~ef~k 89 (175)
+|..+.--.....|..|++
T Consensus 152 ~~~~~~~~~~~~a~~~f~r 170 (222)
T PRK10698 152 VRRQLDSGKLDEAMARFES 170 (222)
T ss_pred HHHHHhCCCcchHHHHHHH
Confidence 6666544344455555444
No 17
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=92.98 E-value=0.11 Score=39.83 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=57.5
Q ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH----
Q psy16159 10 KEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQ---- 85 (175)
Q Consensus 10 kkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~---- 85 (175)
++--...-+..|+.+.|.++...+. ..++.....+|.+.......+.....+..+|+..++. +.++.+.|.
T Consensus 32 k~~~~~~~~~~A~~~lk~~k~~~k~---~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~~--Lk~~~~~i~~~~v 106 (171)
T PF03357_consen 32 KKAIKKGNKERAKIYLKRKKRLEKQ---LEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSKA--LKKINKQINLDKV 106 (171)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SHH--HHHHHHSTTSCCH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhhH
Confidence 3333444556677777766665544 4466777778888888888888888888888888877 445554443
Q ss_pred -HHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhh
Q psy16159 86 -EFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEI 133 (175)
Q Consensus 86 -ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~ 133 (175)
++-.+|...--..+.++++|.+.+ ....+..+++++..|+++.-+.
T Consensus 107 ~~~~d~~~e~~e~~~ei~~~l~~~~--~~~~~~dd~ele~eL~~l~~e~ 153 (171)
T PF03357_consen 107 EKLMDDFQEEMEDQDEISEALSDSM--DQVDDVDDEELEEELEQLEDEI 153 (171)
T ss_dssp HHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc--cCCCCCCHHHHHHHHHHHHHHH
Confidence 222222222222222233332211 1114556677777887774433
No 18
>KOG3231|consensus
Probab=92.29 E-value=1.3 Score=35.12 Aligned_cols=108 Identities=16% Similarity=0.219 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-----HHHHHHHHhhhhHHHHH
Q psy16159 28 RKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQ-----EFQQGITRMNMTDEMID 102 (175)
Q Consensus 28 Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~-----ef~ke~~~~~i~~emm~ 102 (175)
-||...|..-|++-=+++.+++++..+.++.+++.+.+.+|+.--+.| ..+.+.|+ +--++|.+..++=||-+
T Consensus 61 AKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKTM--~amNk~M~pek~~~tmr~FQ~anmKMemTe 138 (208)
T KOG3231|consen 61 AKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKTM--QAMNKKMDPEKTLQTMRNFQKANMKMEMTE 138 (208)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHHH--HHHHccCCHHHHHHHHHHHHHHHHHhhhHH
Confidence 466666777778888899999999999999999888888888766553 22333332 34578899999999999
Q ss_pred HHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhc
Q psy16159 103 EALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKM 137 (175)
Q Consensus 103 d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l 137 (175)
+.+++.+|+--+...-+++-+-|....--+++=.+
T Consensus 139 EMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEi 173 (208)
T KOG3231|consen 139 EMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEI 173 (208)
T ss_pred HHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhh
Confidence 99998876543334445556666665533333333
No 19
>KOG3230|consensus
Probab=89.71 E-value=9.3 Score=31.14 Aligned_cols=114 Identities=15% Similarity=0.239 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H
Q psy16159 14 KIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGI-T 92 (175)
Q Consensus 14 ~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~ef~ke~-~ 92 (175)
.=-.|-|.+.....|.+ +...+-+++++.+.-+-+.+|.-++++|....+.|. +-.+.+|-.-...-+..| +
T Consensus 65 LvRtR~~i~kf~~~kaq---iqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmn----lpq~qkIm~eFekQse~Mdm 137 (224)
T KOG3230|consen 65 LVRTRRYIKKFQNMKAQ---IQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMN----LPQIQKIMQEFEKQSEIMDM 137 (224)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccC----hHHHHHHHHHHHHHHHHHHH
Confidence 33456677777666654 455667888888888888888899999887766543 222334333333333333 3
Q ss_pred HhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhh
Q psy16159 93 RMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEIS 134 (175)
Q Consensus 93 ~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~ 134 (175)
+-.+..+.|+|+|++.-++++.++=++.+++.|==.++-+++
T Consensus 138 ~~Emm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~qL~ 179 (224)
T KOG3230|consen 138 KEEMMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQLS 179 (224)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHcccHHHHhc
Confidence 446778999999988777777777788888876555554443
No 20
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=88.49 E-value=0.42 Score=37.49 Aligned_cols=131 Identities=14% Similarity=0.143 Sum_probs=76.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHH
Q psy16159 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMK-NTADTMKNMNSIMKPEQI 80 (175)
Q Consensus 2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~-~~~~~M~~~n~~m~~~~l 80 (175)
.++|-..++.|+.+.||+-++++||--+...=|--+---.+-+..++.........-..+. .++.++=...+.-++|++
T Consensus 26 rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~p~~l~eAi~siiyAa~r~~elpEL 105 (165)
T PF03398_consen 26 RKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKECPPELKEAISSIIYAAPRCGELPEL 105 (165)
T ss_dssp HHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSSSCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHHhhhccCChhH
Confidence 4678888999999999999999999999998888888777777777766665433322222 223445555555577776
Q ss_pred HHH----HHHHHHHHHHhhhh--HHHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhchh
Q psy16159 81 AAS----AQEFQQGITRMNMT--DEMIDEALDDMLEGSDD-EQESNKIIDQVLGEIGIE 132 (175)
Q Consensus 81 ~~~----M~ef~ke~~~~~i~--~emm~d~~d~~~~~~~~-eee~d~~v~qVl~E~gl~ 132 (175)
..+ +..|.++|...-+- .-.++.-+=.-+...-| ++.++..+..|+.|+|++
T Consensus 106 ~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~p~~~~v~~~L~eIA~e~~i~ 164 (165)
T PF03398_consen 106 QEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKPPSEELVEKYLKEIAKEYGIP 164 (165)
T ss_dssp HHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S---CCHHHHHHHHHHHHCT-S
T ss_pred HHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 543 34466776433111 11122211111111112 356677777777777753
No 21
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=84.26 E-value=21 Score=28.99 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy16159 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQK-----------TRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKN 70 (175)
Q Consensus 2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~-----------~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~ 70 (175)
+...+.|+++|+-+-||-.+..-.....+. ...-.++.+|..+..++..+.+....-.+=...+.+...
T Consensus 72 ~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~ 151 (219)
T TIGR02977 72 QEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLD 151 (219)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999887775533222222222 223344555555555566666555544343445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHH
Q psy16159 71 MNSIMKPEQIAASAQEFQQGITR 93 (175)
Q Consensus 71 ~n~~m~~~~l~~~M~ef~ke~~~ 93 (175)
+|..+.--.....+..|++=-++
T Consensus 152 ~~~~~~~~~~~~a~~~fer~e~k 174 (219)
T TIGR02977 152 VRRQLDSGRSDEAMARFEQYERR 174 (219)
T ss_pred HHHHHhCCCchhHHHHHHHHHHH
Confidence 65554333334555555443333
No 22
>KOG2910|consensus
Probab=82.04 E-value=26 Score=28.47 Aligned_cols=85 Identities=16% Similarity=0.240 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-h--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy16159 14 KIAATILAKQLIQIRKQKTRTYAAQ-G--------KVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASA 84 (175)
Q Consensus 14 ~~~arilAk~lvr~Rk~~~~l~~~k-a--------~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M 84 (175)
.+.=|-+|++|||-..--.-++.+| - |-..--..|..+.++..++..-+.+...++.-|.. +.+++..|
T Consensus 39 le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~--lkkl~~~~ 116 (209)
T KOG2910|consen 39 LEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEA--LKKLQQEF 116 (209)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhc
Confidence 5677899999998644333232222 2 22223334778888889998889999999999998 66666533
Q ss_pred HHHHHHHHHhhhhHHHHHHHhhhh
Q psy16159 85 QEFQQGITRMNMTDEMIDEALDDM 108 (175)
Q Consensus 85 ~ef~ke~~~~~i~~emm~d~~d~~ 108 (175)
. .+=.+.+|+|+=+..
T Consensus 117 ~--------ideV~rimddt~ea~ 132 (209)
T KOG2910|consen 117 D--------IDEVDRIMDDTQEAI 132 (209)
T ss_pred C--------HHHHHHHHHhHHHHH
Confidence 2 233666777765543
No 23
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=81.09 E-value=27 Score=28.04 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy16159 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYA-----------AQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKN 70 (175)
Q Consensus 2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~-----------~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~ 70 (175)
+...+.|+++|+-+.||-++........++..|-. ++.++..+..++..+.+-..+..+-..++++-..
T Consensus 71 ~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~ 150 (221)
T PF04012_consen 71 EKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKK 150 (221)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999988888777766554433 3444444555555555555555444444555444
Q ss_pred HHhc
Q psy16159 71 MNSI 74 (175)
Q Consensus 71 ~n~~ 74 (175)
+|..
T Consensus 151 ~~~~ 154 (221)
T PF04012_consen 151 VNEA 154 (221)
T ss_pred HHHH
Confidence 4443
No 24
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=78.15 E-value=20 Score=24.85 Aligned_cols=75 Identities=11% Similarity=0.234 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q psy16159 27 IRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALD 106 (175)
Q Consensus 27 ~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~ef~ke~~~~~i~~emm~d~~d 106 (175)
.++-..||.+...|+.+|..-+..=..+..+...+..+..++.+++.. ++++.+...|.
T Consensus 4 k~~ll~RL~rIeGQv~gI~~Miee~~~C~dIl~Qi~Av~~Al~~~~~~---------------------vl~~hl~~c~~ 62 (85)
T PF02583_consen 4 KKDLLNRLKRIEGQVRGIERMIEEDRDCEDILQQIAAVRSALDKVGKL---------------------VLEDHLEHCLV 62 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTE-HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 456678899999999999998888878888888888777777777665 56677777776
Q ss_pred hhcCC-CCchHHHHHHH
Q psy16159 107 DMLEG-SDDEQESNKII 122 (175)
Q Consensus 107 ~~~~~-~~~eee~d~~v 122 (175)
....+ .+.++..++++
T Consensus 63 ~~~~~~~~~~~~i~el~ 79 (85)
T PF02583_consen 63 EAIQDEEDREEAIEELI 79 (85)
T ss_dssp CHCCTCCCHHHHHHHHH
T ss_pred hHhcCcccHHHHHHHHH
Confidence 65544 33344444444
No 25
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.56 E-value=28 Score=24.69 Aligned_cols=77 Identities=16% Similarity=0.266 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q psy16159 26 QIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEAL 105 (175)
Q Consensus 26 r~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~ef~ke~~~~~i~~emm~d~~ 105 (175)
..++-.+|+-+...|+.+|..-+..-.=+..+...+..+..++..++.. +.++-+...+
T Consensus 7 ~kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~~~---------------------vl~~hl~~cv 65 (89)
T COG1937 7 EKKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLMRE---------------------VLEEHLKECV 65 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Confidence 3567788999999999999998888777777777777666666555443 5666777777
Q ss_pred hhhcCCCCchHHHHHHHH
Q psy16159 106 DDMLEGSDDEQESNKIID 123 (175)
Q Consensus 106 d~~~~~~~~eee~d~~v~ 123 (175)
.....+.+.++..++++.
T Consensus 66 ~~a~~~~~~~~~i~el~~ 83 (89)
T COG1937 66 KRAVEDGDEEESIDELIK 83 (89)
T ss_pred HHHhhccchHhHHHHHHH
Confidence 555433333344444443
No 26
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=68.99 E-value=38 Score=23.96 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16159 27 IRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSI 74 (175)
Q Consensus 27 ~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~ 74 (175)
.++-.+||-+...|+.+|..-+..=..+..+...+..+-.++..++..
T Consensus 8 k~~ll~RL~RIeGQv~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~~ 55 (90)
T PRK15039 8 KQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMRE 55 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999998888777777777777666666655544
No 27
>PRK11352 regulator protein FrmR; Provisional
Probab=62.43 E-value=53 Score=23.21 Aligned_cols=48 Identities=8% Similarity=0.090 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16159 27 IRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSI 74 (175)
Q Consensus 27 ~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~ 74 (175)
.++-..||.+...|+.+|..-+..-..+..+...+..+..++.++...
T Consensus 8 k~~ll~RL~Ri~GQv~gi~~Mie~~~~C~dil~Ql~Avr~Al~~~~~~ 55 (91)
T PRK11352 8 KKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLMAE 55 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999988777888877777777776655544
No 28
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=61.82 E-value=21 Score=25.74 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=29.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q psy16159 3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTRTY 35 (175)
Q Consensus 3 ~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~ 35 (175)
..++.++..|+.+.||..++.+-.+|+..=+.|
T Consensus 70 d~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk~ 102 (103)
T PF07361_consen 70 DKAEALAEAGKLDEAKAALKKLDDLRKEYHKKF 102 (103)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHhc
Confidence 467889999999999999999999999887665
No 29
>PRK09720 cybC cytochrome b562; Provisional
Probab=60.43 E-value=21 Score=25.85 Aligned_cols=31 Identities=32% Similarity=0.336 Sum_probs=26.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q psy16159 5 IKKAAKEGDKIAATILAKQLIQIRKQKTRTY 35 (175)
Q Consensus 5 IKkaakkg~~~~arilAk~lvr~Rk~~~~l~ 35 (175)
....+..|+.+.||..|+++..+|++.-+-|
T Consensus 69 A~~La~~GkL~eAK~~a~~l~~~Rn~yHkky 99 (100)
T PRK09720 69 ALKLANEGKVKEAQAAAEQLKTTRNSYHKKY 99 (100)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466889999999999999999999876654
No 30
>KOG1656|consensus
Probab=60.25 E-value=96 Score=25.50 Aligned_cols=111 Identities=17% Similarity=0.125 Sum_probs=55.8
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHH
Q psy16159 17 ATILAKQ----LIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASA--QEFQQG 90 (175)
Q Consensus 17 arilAk~----lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M--~ef~ke 90 (175)
||.|+.- .++.=|.+.+|-.-=+|++++.+.|..+.-+.+-++.=.-+-.+|+..-+.|+. +...| ++...=
T Consensus 52 A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~--~h~~mDiDkVdd~ 129 (221)
T KOG1656|consen 52 ARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKAMKA--AHKNMDIDKVDDL 129 (221)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHH--HHhccChhHHHHH
Confidence 5555533 233335556666666777777777776665555444444555566666666333 33222 222222
Q ss_pred HHHh---hhhHHHHHHHhhhhcCC--CCchHHHHHHHHHHHHHh
Q psy16159 91 ITRM---NMTDEMIDEALDDMLEG--SDDEQESNKIIDQVLGEI 129 (175)
Q Consensus 91 ~~~~---~i~~emm~d~~d~~~~~--~~~eee~d~~v~qVl~E~ 129 (175)
|... -=..+-|++++..-++. +-+|+|-..+++..-.|-
T Consensus 130 MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqee 173 (221)
T KOG1656|consen 130 MDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEE 173 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHH
Confidence 2222 11122345556555542 335666666666655444
No 31
>KOG1655|consensus
Probab=59.90 E-value=95 Score=25.38 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhcC
Q psy16159 22 KQLIQIRKQKTRTYAAQGKVHSIGIQNKTMG-SNIKMAEAMKNTADTMKNMNSIM 75 (175)
Q Consensus 22 k~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~-s~~~~~~~m~~~~~~M~~~n~~m 75 (175)
+...|.=|++.-|-..+-.|..-+..+..+. +...+-+++. +..+|+..|+.|
T Consensus 63 qrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~-Tv~AmK~~~k~m 116 (218)
T KOG1655|consen 63 QRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQA-TVAAMKDTNKEM 116 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4456666888888888888888888775554 3333333333 345566666553
No 32
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=57.77 E-value=25 Score=25.42 Aligned_cols=31 Identities=29% Similarity=0.253 Sum_probs=27.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q psy16159 3 LEIKKAAKEGDKIAATILAKQLIQIRKQKTR 33 (175)
Q Consensus 3 ~~IKkaakkg~~~~arilAk~lvr~Rk~~~~ 33 (175)
.++.+.|..|+.+.||.-|+.+.-+|+..-+
T Consensus 67 D~a~klaqeGnl~eAKaaak~l~d~Rn~YHk 97 (100)
T COG3783 67 DKADKLAQEGNLDEAKAAAKTLKDTRNTYHK 97 (100)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999998654
No 33
>PRK10698 phage shock protein PspA; Provisional
Probab=38.40 E-value=1.8e+02 Score=23.71 Aligned_cols=64 Identities=3% Similarity=0.103 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q psy16159 28 RKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMN 95 (175)
Q Consensus 28 Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~ef~ke~~~~~ 95 (175)
++-..+|..++++-+.+..|.+++.++.++...+.+... -+..-....+..-+.+++-+.+-++
T Consensus 123 ~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~----~~a~~~f~rmE~ki~~~Ea~aea~~ 186 (222)
T PRK10698 123 GELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKL----DEAMARFESFERRIDQMEAEAESHG 186 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----chHHHHHHHHHHHHHHHHHHHhHhh
Confidence 344556677777778888888888888887777663211 1122223445555555555555443
No 34
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=37.38 E-value=2.4e+02 Score=23.63 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16159 39 GKVHSIGIQNKTMGSNIKMAEAMKNTAD 66 (175)
Q Consensus 39 a~l~sv~~~l~~~~s~~~~~~~m~~~~~ 66 (175)
|.|..+..|+.+..++.+++++|+-++-
T Consensus 1 A~lk~ik~RI~sv~~i~kIt~aMkmvA~ 28 (290)
T PF00231_consen 1 ASLKEIKRRIKSVKSIQKITKAMKMVAA 28 (290)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888889888888888888875543
No 35
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=37.27 E-value=98 Score=18.86 Aligned_cols=32 Identities=19% Similarity=0.156 Sum_probs=25.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q psy16159 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTR 33 (175)
Q Consensus 2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~ 33 (175)
+.-|+.|-+.|..+-+.+|-.+|=..+.++.+
T Consensus 9 ~~~I~qAk~~~r~dEV~~L~~NL~EL~~e~~~ 40 (42)
T PF11464_consen 9 ESYIKQAKAARRFDEVATLEENLRELQDEIDE 40 (42)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 35688999999999999999999887776543
No 36
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=33.64 E-value=3.7e+02 Score=24.42 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=16.8
Q ss_pred HHHHcCCh--------HHHHHHHHHHHHHHHHHHHHH
Q psy16159 7 KAAKEGDK--------IAATILAKQLIQIRKQKTRTY 35 (175)
Q Consensus 7 kaakkg~~--------~~arilAk~lvr~Rk~~~~l~ 35 (175)
+||+.|.. +-.|-||.+--..=+++..+.
T Consensus 383 EAARAGE~GrGFAVVA~EVr~LA~~t~~st~~I~~~i 419 (553)
T PRK15048 383 EAARAGEQGRGFAVVAGEVRNLASRSAQAAKEIKALI 419 (553)
T ss_pred HHhccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666652 556677766555555555554
No 37
>KOG0038|consensus
Probab=32.45 E-value=56 Score=25.71 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=21.4
Q ss_pred CCchHHHHHHHHHHHHHhchhhhhhcc
Q psy16159 112 SDDEQESNKIIDQVLGEIGIEISGKMA 138 (175)
Q Consensus 112 ~~~eee~d~~v~qVl~E~gl~~~~~l~ 138 (175)
+-.++|+.-++++|++|..++-.++|+
T Consensus 141 eLs~eEv~~i~ekvieEAD~DgDgkl~ 167 (189)
T KOG0038|consen 141 ELSDEEVELICEKVIEEADLDGDGKLS 167 (189)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCccc
Confidence 334689999999999999887666654
No 38
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=32.25 E-value=1.4e+02 Score=28.41 Aligned_cols=91 Identities=13% Similarity=0.281 Sum_probs=39.1
Q ss_pred HHhhHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHHH-HHhhhhHHHHH
Q psy16159 36 AAQGKVHSIGIQNKTMGSNIK-----MAEAMKNTADTMKNMNSIMKPEQIAASAQE-------FQQGI-TRMNMTDEMID 102 (175)
Q Consensus 36 ~~ka~l~sv~~~l~~~~s~~~-----~~~~m~~~~~~M~~~n~~m~~~~l~~~M~e-------f~ke~-~~~~i~~emm~ 102 (175)
...+||+.|..+.+-...+++ ..++|+..+.....++.. +.+||.+... +..|+ .+.|-++..+.
T Consensus 231 ~vQ~RlN~val~t~VL~~NQk~iA~sFN~Ai~~I~~g~~t~~~A--l~KiQ~VVN~q~~aL~~L~~qL~nnF~AISssI~ 308 (610)
T PF01601_consen 231 AVQARLNYVALQTDVLQENQKIIANSFNKAIGNIQLGFTTTASA--LNKIQDVVNQQGQALNQLTSQLSNNFGAISSSIQ 308 (610)
T ss_dssp ---------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHhcceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 456778888777655544443 345677777777777777 6667655544 33343 23477777777
Q ss_pred HHhhhhcCCCCchHHHHHHHHHHHHHh
Q psy16159 103 EALDDMLEGSDDEQESNKIIDQVLGEI 129 (175)
Q Consensus 103 d~~d~~~~~~~~eee~d~~v~qVl~E~ 129 (175)
|..... |.-+.+.++|.+|.==|.-+
T Consensus 309 dIy~RL-d~leAdaQVDRLItGRL~aL 334 (610)
T PF01601_consen 309 DIYNRL-DQLEADAQVDRLITGRLAAL 334 (610)
T ss_dssp HHHHHH-HHHHHH--------------
T ss_pred HHHHHH-HHHhhcccccccccchHHHH
Confidence 766542 21122345555554433333
No 39
>PRK05255 hypothetical protein; Provisional
Probab=32.21 E-value=2.6e+02 Score=22.16 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=57.5
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16159 7 KAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQE 86 (175)
Q Consensus 7 kaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~e 86 (175)
|+-.|-++....-|+++|+..-.....-+-+.-.|-.--.......+....-..|+-+++.|.. .++..|...+..
T Consensus 19 KSq~KRe~~alq~LG~~L~~Ls~~ql~~lpL~e~L~~Ai~ea~ri~~~eA~RRqlqyIGKLmR~----~d~e~I~~al~~ 94 (171)
T PRK05255 19 KSQIKRDAEALQDLGEELVELSKDQLAKLPLDEDLRDAILEAQRITSHEARRRQLQYIGKLMRN----EDVEPIRAALDK 94 (171)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHhcCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHhh----CCHHHHHHHHHH
Confidence 4555667888999999999988777666666555554444444443444555677777777766 488999988888
Q ss_pred HHHHHHHh
Q psy16159 87 FQQGITRM 94 (175)
Q Consensus 87 f~ke~~~~ 94 (175)
+.......
T Consensus 95 ~~~~~~~~ 102 (171)
T PRK05255 95 LKNKHNQE 102 (171)
T ss_pred HhchhHHH
Confidence 77655444
No 40
>PHA03188 UL14 tegument protein; Provisional
Probab=28.88 E-value=3.2e+02 Score=22.18 Aligned_cols=75 Identities=4% Similarity=0.071 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q psy16159 28 RKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDEALDD 107 (175)
Q Consensus 28 Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~ef~ke~~~~~i~~emm~d~~d~ 107 (175)
.....+.+++.++|.+|.-++.... .-......+..++..=-+.+++. ....|.+.=+.+-=.++.++|++..
T Consensus 58 ~~dl~rqLrs~aRve~veQK~r~Iq---~rVeeQ~a~r~iL~~nRRfL~Pd----Fid~lD~~ED~l~d~Ed~L~da~~~ 130 (199)
T PHA03188 58 CADLNNNIRSAARIAAVEQKIADIQ---EKVEEQTSIQKILNANRRYIAPD----FIEGLDKIEDDNCDGIDKLEDAVGG 130 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhcChH----HHHHHHHHHHHHHhhHHHHHhhhcC
Confidence 4455666677777777776665554 22333344445665555555542 3334444444444456667777755
Q ss_pred hc
Q psy16159 108 ML 109 (175)
Q Consensus 108 ~~ 109 (175)
..
T Consensus 131 ~~ 132 (199)
T PHA03188 131 DI 132 (199)
T ss_pred CC
Confidence 43
No 41
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=28.80 E-value=2.8e+02 Score=21.52 Aligned_cols=84 Identities=11% Similarity=0.158 Sum_probs=41.9
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16159 7 KAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQE 86 (175)
Q Consensus 7 kaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~e 86 (175)
+...|-.+....-|+++|+..-.....-+-+.-.|-..-.-.....+....-..++-++ ++.+..++..|...+..
T Consensus 8 KSq~KRe~~~lq~Lg~~L~~L~~~ql~~lpL~e~l~~Ai~~a~ri~~~~arrRQ~qyIG----KLmR~~d~e~I~~al~~ 83 (157)
T PF04751_consen 8 KSQLKREMHALQDLGEELVELSPKQLAKLPLPEELRDAIMEARRITSHEARRRQLQYIG----KLMREEDPEAIRAALDA 83 (157)
T ss_dssp --------HHHHHHHHHHTTS-HHHHTTS---HHHHHHHHHGGG--SHHHHHHHHHHHH----HHGGGS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhCCHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH----HHHHhCCHHHHHHHHHH
Confidence 45566778888889999988776555444444433333332222223333344455444 45555699999999988
Q ss_pred HHHHHHHh
Q psy16159 87 FQQGITRM 94 (175)
Q Consensus 87 f~ke~~~~ 94 (175)
+.......
T Consensus 84 ~~~~~~~~ 91 (157)
T PF04751_consen 84 LKNKSQQE 91 (157)
T ss_dssp HHHHHHHH
T ss_pred HHcccHHH
Confidence 77665444
No 42
>KOG2027|consensus
Probab=28.41 E-value=4.4e+02 Score=23.66 Aligned_cols=126 Identities=9% Similarity=0.123 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHH
Q psy16159 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMK-NTADTMKNMNSIMKPEQI 80 (175)
Q Consensus 2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~-~~~~~M~~~n~~m~~~~l 80 (175)
.++|-..++.|+...||+=++.|||--+.+.-|--+--=-+-|..|+.....+..+-..++ .++.+|=.+-++-++|+|
T Consensus 21 RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l~EAVsSlifAA~R~~EvpEL 100 (388)
T KOG2027|consen 21 RRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDLKEAVSSLIFAAPRLSEVPEL 100 (388)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHHHHHHHHHHHHhccccccHHH
Confidence 5678889999999999999999999998887776666666667777777766655544433 455667777788889998
Q ss_pred HHHH----HHHHHHHHHh--------hhhHHHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhchh
Q psy16159 81 AASA----QEFQQGITRM--------NMTDEMIDEALDDMLEGSDD-EQESNKIIDQVLGEIGIE 132 (175)
Q Consensus 81 ~~~M----~ef~ke~~~~--------~i~~emm~d~~d~~~~~~~~-eee~d~~v~qVl~E~gl~ 132 (175)
+.+= ..|.++|-.. ++...+|+.. ...-+ .+-....+-.|+.|+++.
T Consensus 101 ~~i~~~f~~kYGk~f~~~a~~l~p~~~Vn~kiiekL-----s~~~P~~e~k~k~lkEIA~ey~v~ 160 (388)
T KOG2027|consen 101 REIRDLFVKKYGKEFVKAAIELRPGNGVNRKIIEKL-----SVEAPPKELKEKYLKEIAKEYNVN 160 (388)
T ss_pred HHHHHHHHHHHhHHHHHHHHhccccCCcCHHHHHHh-----cCCCCcHHHHHHHHHHHHHHhCCC
Confidence 7554 4456666544 3333444442 22223 333577777777777763
No 43
>KOG3232|consensus
Probab=27.55 E-value=3.3e+02 Score=21.94 Aligned_cols=96 Identities=9% Similarity=0.210 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHHHH------HhhhhcCCCC
Q psy16159 40 KVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASAQEFQQGITRMNMTDEMIDE------ALDDMLEGSD 113 (175)
Q Consensus 40 ~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M~ef~ke~~~~~i~~emm~d------~~d~~~~~~~ 113 (175)
++--+++|++...+-.+.+-.|..+++.|..+-+.|+- --++| ++++-.+-|+-.+.-.+| .|++.+++++
T Consensus 67 n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK~md~--alktm-NLekis~~MDkFE~qFedldvqt~~me~~m~~st 143 (203)
T KOG3232|consen 67 NYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVKSMDS--ALKTM-NLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGST 143 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhC-CHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcc
Confidence 34456778998888888888899999999998887543 22222 244444444444443333 3566666555
Q ss_pred chHHHHHHHHHHHHHhchhhhhhcc
Q psy16159 114 DEQESNKIIDQVLGEIGIEISGKMA 138 (175)
Q Consensus 114 ~eee~d~~v~qVl~E~gl~~~~~l~ 138 (175)
.-.--+..|+-.+.+..-+.+-.|.
T Consensus 144 ~l~tpq~~Vd~Lmq~vADeaGlEln 168 (203)
T KOG3232|consen 144 ALSTPQGDVDSLMQQVADEAGLELN 168 (203)
T ss_pred cccCChhHHHHHHHHHHHHhchhhh
Confidence 5455577888888888766665554
No 44
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=27.18 E-value=1.4e+02 Score=19.40 Aligned_cols=31 Identities=10% Similarity=0.350 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhh
Q psy16159 77 PEQIAASAQEFQQGITRMNMTDEMIDEALDDM 108 (175)
Q Consensus 77 ~~~l~~~M~ef~ke~~~~~i~~emm~d~~d~~ 108 (175)
..+|..-|.++.+.++++..+.+-+.+ |...
T Consensus 7 f~eL~D~~~~L~~n~~~L~~ihesL~~-FNES 37 (58)
T PF08653_consen 7 FAELSDSMETLDKNMEQLNQIHESLSD-FNES 37 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 345677888888888888888887777 5433
No 45
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=24.78 E-value=3.2e+02 Score=22.80 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16159 40 KVHSIGIQNKTMGSNIKMAEAMKNTADT 67 (175)
Q Consensus 40 ~l~sv~~~l~~~~s~~~~~~~m~~~~~~ 67 (175)
.|..+..|+.+..++.+++++|+-++.+
T Consensus 3 ~l~~lk~RI~sv~~i~kIt~aMkmvA~s 30 (284)
T PRK05621 3 SLKEIRRRIKSVKNTQKITKAMEMVAAS 30 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888855543
No 46
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=24.18 E-value=4e+02 Score=21.75 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16159 17 ATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSI 74 (175)
Q Consensus 17 arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~ 74 (175)
+++-+.=+=+...-+.+|-.+...|..+.- +..++.+.+..|+..++.|..+|..
T Consensus 98 akid~~l~esl~~~i~~~~~aa~~i~~~~~---~~~~~~~Y~eqm~~aa~~l~~LN~~ 152 (202)
T TIGR03513 98 AKKDATLMQSLGNGINNFEGAAKTLAPMTD---SYAQQKKYIEQMSSLAANMEGLNTI 152 (202)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444334444445554444444444443 3333446666677777777777766
No 47
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=23.10 E-value=1.3e+02 Score=25.46 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16159 40 KVHSIGIQNKTMGSNIKMAEAMKNTAD 66 (175)
Q Consensus 40 ~l~sv~~~l~~~~s~~~~~~~m~~~~~ 66 (175)
.|..+..|+.+..++.+++++|+-++.
T Consensus 3 ~l~~ik~RI~sv~~t~kIt~AMkmVAa 29 (291)
T PRK13426 3 SLKEIKTRIASVQSTRKITSAMKMVAS 29 (291)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888875543
No 48
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=22.56 E-value=2.7e+02 Score=21.16 Aligned_cols=55 Identities=11% Similarity=0.231 Sum_probs=35.4
Q ss_pred cCCHHHHHHHHHHHHHHHH---HhhhhHHHHHHHhhhhcCCCCchHHH-HHHHHHHHHHhchhh
Q psy16159 74 IMKPEQIAASAQEFQQGIT---RMNMTDEMIDEALDDMLEGSDDEQES-NKIIDQVLGEIGIEI 133 (175)
Q Consensus 74 ~m~~~~l~~~M~ef~ke~~---~~~i~~emm~d~~d~~~~~~~~eee~-d~~v~qVl~E~gl~~ 133 (175)
.+++.+.+..+.+++..+. -....++.....-+.++ +..+ +.++++-++++||.+
T Consensus 48 ~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~~~qvW-----~~~V~~~ll~~e~eklGi~V 106 (145)
T PF13623_consen 48 KISYQEFQQRVEQATENYKQQNGRSPTEQEQNQIRNQVW-----NQMVQNILLEQEFEKLGITV 106 (145)
T ss_pred EcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCcc
Confidence 4667777777777764332 22445555556666666 2334 568899999999955
No 49
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=21.41 E-value=3.7e+02 Score=20.36 Aligned_cols=37 Identities=19% Similarity=0.494 Sum_probs=22.5
Q ss_pred HHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchh
Q psy16159 88 QQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIE 132 (175)
Q Consensus 88 ~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~ 132 (175)
+++-....|+++|+=-.| .++|+...|..++.++|..
T Consensus 74 e~e~~Ei~iL~~yLP~~l--------seeEi~~~v~~~i~e~ga~ 110 (143)
T PF09424_consen 74 EKEQAEIEILEEYLPKQL--------SEEEIEAIVEEAIAELGAS 110 (143)
T ss_dssp HHHHHHHHHHGGGS-------------HHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhCcCCC--------CHHHHHHHHHHHHHHhCCC
Confidence 344555566666554332 3689999999999999853
No 50
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=21.33 E-value=4.4e+02 Score=22.19 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy16159 40 KVHSIGIQNKTMGSNIKMAEAMKNTADT 67 (175)
Q Consensus 40 ~l~sv~~~l~~~~s~~~~~~~m~~~~~~ 67 (175)
.+..+..|+.+..++.+++++|+-++.+
T Consensus 3 ~l~~ik~RI~Sv~~t~kItkAMkmvAaa 30 (288)
T PRK13423 3 SLKDIKKRIVSVKNTRQITKAMKMVSAA 30 (288)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888855543
No 51
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.12 E-value=86 Score=25.56 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy16159 77 PEQIAASAQEFQQGITRM 94 (175)
Q Consensus 77 ~~~l~~~M~ef~ke~~~~ 94 (175)
+.++++.|++|.+++.++
T Consensus 74 m~~~qk~m~efq~e~~eA 91 (201)
T COG1422 74 MKELQKMMKEFQKEFREA 91 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556789999999998776
No 52
>PRK14127 cell division protein GpsB; Provisional
Probab=21.00 E-value=3.4e+02 Score=19.83 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=9.4
Q ss_pred CHHHHHHHHHHhh
Q psy16159 161 SDAEIEAQLARLL 173 (175)
Q Consensus 161 ~~ddL~~RL~~Lr 173 (175)
.-=|+-+||.+|=
T Consensus 86 tn~DiLKRls~LE 98 (109)
T PRK14127 86 TNYDILKRLSNLE 98 (109)
T ss_pred chHHHHHHHHHHH
Confidence 4566778998873
Done!