Query psy16159
Match_columns 175
No_of_seqs 112 out of 623
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:18:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frt_A Charged multivesicular 100.0 1.6E-46 5.5E-51 304.7 6.4 171 1-174 40-218 (218)
2 2gd5_A Charged multivesicular 100.0 3.2E-38 1.1E-42 249.4 0.1 139 1-142 40-178 (179)
3 3eab_G CHMP1B; spastin, MIT, E 98.9 1.8E-11 6E-16 77.3 -3.7 50 117-174 1-50 (50)
4 3um3_B Charged multivesicular 97.3 0.0012 4E-08 47.3 7.9 53 74-128 2-54 (104)
5 2v6x_B DOA4-independent degrad 97.0 0.00025 8.4E-09 45.0 2.0 16 160-175 38-53 (54)
6 3frt_A Charged multivesicular 95.5 0.0022 7.4E-08 51.6 -0.3 99 29-129 61-164 (218)
7 2gd5_A Charged multivesicular 93.0 0.0087 3E-07 46.3 -1.7 99 29-129 61-164 (179)
8 3ggz_E Vacuolar protein-sortin 91.2 0.2 6.7E-06 27.4 2.8 16 159-174 14-29 (29)
9 2xze_Q Charged multivesicular 84.9 0.21 7.2E-06 29.4 0.3 11 164-174 30-40 (40)
10 2hh7_A Hypothetical protein CS 83.8 5.1 0.00018 28.9 7.4 48 27-74 9-56 (119)
11 3ggy_A Increased sodium tolera 82.6 12 0.0004 29.1 9.6 128 2-134 38-185 (193)
12 3frr_A Uncharacterized protein 82.5 10 0.00034 29.5 9.2 126 2-132 39-178 (191)
13 1gp8_A Protein (scaffolding pr 69.3 1.5 5E-05 25.6 0.7 26 1-26 13-38 (40)
14 4adz_A CSOR; transcription, co 66.9 26 0.0009 25.7 7.3 50 25-74 49-98 (136)
15 3aai_A Copper homeostasis oper 65.3 28 0.00097 23.7 6.9 48 27-74 13-61 (94)
16 3twe_A Alpha4H; unknown functi 63.4 4.1 0.00014 21.2 1.7 14 161-174 9-22 (27)
17 1yzm_A FYVE-finger-containing 63.3 14 0.00049 22.6 4.5 34 2-35 15-48 (51)
18 1z0k_B FYVE-finger-containing 54.3 25 0.00085 22.9 4.7 34 2-35 33-66 (69)
19 3v1a_A Computational design, M 44.7 39 0.0013 20.3 4.2 32 2-33 14-45 (48)
20 2luh_B Vacuolar protein-sortin 44.5 17 0.00058 22.9 2.6 54 75-128 1-54 (59)
21 1z0j_B FYVE-finger-containing 43.8 48 0.0016 20.8 4.6 33 2-34 22-54 (59)
22 3oee_G ATP synthase subunit ga 23.7 77 0.0026 25.5 4.0 34 40-73 2-36 (278)
23 3oaa_G ATP synthase gamma chai 22.9 82 0.0028 25.5 4.0 27 40-66 2-28 (286)
24 3um3_B Charged multivesicular 22.2 2E+02 0.0068 19.8 7.8 30 113-142 43-76 (104)
25 1use_A VAsp, vasodilator-stimu 20.1 1.4E+02 0.0047 17.6 3.5 14 81-94 14-27 (45)
No 1
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-46 Score=304.75 Aligned_cols=171 Identities=25% Similarity=0.429 Sum_probs=107.3
Q ss_pred CHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16159 1 QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQI 80 (175)
Q Consensus 1 l~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l 80 (175)
++.+||++||+||+++|||||++|||+|+++.+||++++||++|++||++++++.+|+++|++++++|+.||++||+|+|
T Consensus 40 ~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~M~~~n~~m~l~~i 119 (218)
T 3frt_A 40 VKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEI 119 (218)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCC-CCCCCCCCCC---CCCC
Q psy16159 81 AASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPT-VSGKVGEGSK---SSSK 156 (175)
Q Consensus 81 ~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~-~~~~~~~~~~---~~~~ 156 (175)
+.+|++|++||+++||++|||+|+|+++++.+++++|+|++|+|||+|+| .++|+.+|+ +.+.++.+.. +.+.
T Consensus 120 ~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~---~~~l~~~p~~~~~~~~~~~~~~~~~~~ 196 (218)
T 3frt_A 120 QATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEIT---AGALGKAPSKVTDALPEPEPPGAMAAS 196 (218)
T ss_dssp HHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC-------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHh---HhHhhcCCCCCCCCCCCcccccccccc
Confidence 99999999999999999999999999998888899999999999999998 567888876 2232222211 0000
Q ss_pred ----CCCCCHHHHHHHHHHhhC
Q psy16159 157 ----TQVPSDAEIEAQLARLLG 174 (175)
Q Consensus 157 ----~~~~~~ddL~~RL~~Lr~ 174 (175)
..+.+.+++..||++||+
T Consensus 197 ~~~e~~~~~~~~m~~rl~al~s 218 (218)
T 3frt_A 197 EDEEEEEEALEAMQSRLATLRS 218 (218)
T ss_dssp ----------------------
T ss_pred ccchhhHHHHHHHHHHHHHhcC
Confidence 111234567889999985
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=100.00 E-value=3.2e-38 Score=249.36 Aligned_cols=139 Identities=27% Similarity=0.478 Sum_probs=108.3
Q ss_pred CHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16159 1 QELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQI 80 (175)
Q Consensus 1 l~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l 80 (175)
++.+||+|+++||+++|||||+++||.|+++.+||+++++|++|+++|+++.++..++++|++++++|+.+|++||+|+|
T Consensus 40 ~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~~M~~~n~~m~l~~i 119 (179)
T 2gd5_A 40 VKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEI 119 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSHHHHTTTSSTTSSSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHHhchhhhhhccCCCC
Q psy16159 81 AASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGEIGIEISGKMANAPT 142 (175)
Q Consensus 81 ~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E~gl~~~~~l~~~p~ 142 (175)
+++|++|++||+++|+++|||+|+|+++++++++++|++++|+|||+|+|+ ++||.+|+
T Consensus 120 ~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~E~~~---~~l~~~P~ 178 (179)
T 2gd5_A 120 QATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITA---GALGKAPS 178 (179)
T ss_dssp CHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTCCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHhhH---hhcccCCC
Confidence 999999999999999999999999999988888999999999999999984 47777664
No 3
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=98.92 E-value=1.8e-11 Score=77.26 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhhC
Q psy16159 117 ESNKIIDQVLGEIGIEISGKMANAPTVSGKVGEGSKSSSKTQVPSDAEIEAQLARLLG 174 (175)
Q Consensus 117 e~d~~v~qVl~E~gl~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ddL~~RL~~Lr~ 174 (175)
++|++|+||+||+|++++.+|+.+|.+.. +.+.. ..++|+|.+||++||+
T Consensus 1 qVd~Lm~qVaDE~Glel~~~L~~~~~~~~--~~~~~------~~~eD~L~~RLaaLR~ 50 (50)
T 3eab_G 1 QVDMLLQEMADEAGLDLNMELPQGQTGSV--GTSVA------SAEQDELSQRLARLRD 50 (50)
T ss_dssp CCCHHHHHHHHHTTCC---------CHHH--HHHHH------HHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHhCchHHhhccccccccc--CCCCC------cccHHHHHHHHHHHhC
Confidence 36899999999999999999998876221 11111 2369999999999995
No 4
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=97.30 E-value=0.0012 Score=47.31 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHH
Q psy16159 74 IMKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGE 128 (175)
Q Consensus 74 ~m~~~~l~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E 128 (175)
-|++.++.++|.++..+++..+=+++++...++. ....+++|.+.++..+-.|
T Consensus 2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~--~~~~DEdELe~ELe~Le~e 54 (104)
T 3um3_B 2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGF--GEEFDEDELMAELEELEQE 54 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC--CCCCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999987642 1112344555555544443
No 5
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.00025 Score=45.01 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=13.7
Q ss_pred CCHHHHHHHHHHhhCC
Q psy16159 160 PSDAEIEAQLARLLGS 175 (175)
Q Consensus 160 ~~~ddL~~RL~~Lr~~ 175 (175)
.++|||++||++||+.
T Consensus 38 ~~ddDLQARLdsLRR~ 53 (54)
T 2v6x_B 38 NPDDDLQARLNTLKKQ 53 (54)
T ss_dssp -CCHHHHHHHHHHHCC
T ss_pred CchHHHHHHHHHhccC
Confidence 3799999999999973
No 6
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=95.47 E-value=0.0022 Score=51.55 Aligned_cols=99 Identities=19% Similarity=0.273 Sum_probs=57.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHh---hhhHHHHHH
Q psy16159 29 KQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASA--QEFQQGITRM---NMTDEMIDE 103 (175)
Q Consensus 29 k~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M--~ef~ke~~~~---~i~~emm~d 103 (175)
++..|.-+...+|.....+|++.....+...++..++.+|+.+... ...+...| +++++-|.++ -..-+++++
T Consensus 61 kelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~--M~~~n~~m~l~~i~~tM~efekE~~k~~i~eE 138 (218)
T 3frt_A 61 KEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEE 138 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHH--HHHHHHSTTSHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4445566667788888889999888888888888888888888888 44466666 6666666666 334456778
Q ss_pred HhhhhcCCCCchHHHHHHHHHHHHHh
Q psy16159 104 ALDDMLEGSDDEQESNKIIDQVLGEI 129 (175)
Q Consensus 104 ~~d~~~~~~~~eee~d~~v~qVl~E~ 129 (175)
.|++++++.++.++.+++++.+++.+
T Consensus 139 mm~Da~d~~~~~~~~eee~d~~v~kV 164 (218)
T 3frt_A 139 MLEDTFESMDDQEEMEEEAEMEIDRI 164 (218)
T ss_dssp --------------CTTSTTTHHHHH
T ss_pred HHHHHHhcccccCCchHHHHHHHHHH
Confidence 89999877655566677888888877
No 7
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=93.03 E-value=0.0087 Score=46.25 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHhhhhHHH---HHH
Q psy16159 29 KQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSIMKPEQIAASA--QEFQQGITRMNMTDEM---IDE 103 (175)
Q Consensus 29 k~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~m~~~~l~~~M--~ef~ke~~~~~i~~em---m~d 103 (175)
++..|.-+...+|.....+|++.....+...++..++.+|+.+++. +..+.+.| +++++-|..+.--.+. +++
T Consensus 61 k~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E 138 (179)
T 2gd5_A 61 KEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEE 138 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556777788888888888777777777777777777776 44455555 5555555555444444 488
Q ss_pred HhhhhcCCCCchHHHHHHHHHHHHHh
Q psy16159 104 ALDDMLEGSDDEQESNKIIDQVLGEI 129 (175)
Q Consensus 104 ~~d~~~~~~~~eee~d~~v~qVl~E~ 129 (175)
.|++.+++..++++.+++++.+++.+
T Consensus 139 ~m~d~~~~~~~~~~~eee~d~~v~kV 164 (179)
T 2gd5_A 139 MLEDTFESMDDQEEMEEEAEMEIDRI 164 (179)
T ss_dssp ------------------CTTHHHHT
T ss_pred HHHHHHhhcccCCCcHHHHHHHHHHH
Confidence 89998877655566677777777766
No 8
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=91.18 E-value=0.2 Score=27.42 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHHHhhC
Q psy16159 159 VPSDAEIEAQLARLLG 174 (175)
Q Consensus 159 ~~~~ddL~~RL~~Lr~ 174 (175)
++.+|.|-.||++||+
T Consensus 14 eekEDkLAqRLRALR~ 29 (29)
T 3ggz_E 14 DEKEDKLAQRLRALRG 29 (29)
T ss_pred chhhHHHHHHHHHHcC
Confidence 4679999999999994
No 9
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=84.91 E-value=0.21 Score=29.41 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=9.2
Q ss_pred HHHHHHHHhhC
Q psy16159 164 EIEAQLARLLG 174 (175)
Q Consensus 164 dL~~RL~~Lr~ 174 (175)
+++.||++||+
T Consensus 30 ~MqsRLaALRS 40 (40)
T 2xze_Q 30 AMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcC
Confidence 37789999996
No 10
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=83.82 E-value=5.1 Score=28.87 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16159 27 IRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSI 74 (175)
Q Consensus 27 ~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~ 74 (175)
.++..+||-+...|+.+|..-+..=.-+..+...+..+..++..++..
T Consensus 9 kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~~ 56 (119)
T 2hh7_A 9 KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRV 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999998888888888888888777777766654
No 11
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=82.57 E-value=12 Score=29.12 Aligned_cols=128 Identities=7% Similarity=0.053 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHH--------HHHHHHHHH-HHHHHHHHHH
Q psy16159 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGS--------NIKMAEAMK-NTADTMKNMN 72 (175)
Q Consensus 2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s--------~~~~~~~m~-~~~~~M~~~n 72 (175)
..+|-+..+.|..+.|||=+.++||--+...=|--+---.+-+..|+..... ....-..+. .++.++=..-
T Consensus 38 RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll~~~~~e~~~~~k~cp~~l~EAvsslIyAa~ 117 (193)
T 3ggy_A 38 RRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVINDISTEEQLVKEHMDDGINEAIRSLIYAIL 117 (193)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTCCSHHHHHHHSSSSSHHHHHHHHHHHGG
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHHHHHHHHhcc
Confidence 3577888999999999999999999998887776655555555555544443 112222222 3334555666
Q ss_pred hcCCHHHHH----HHHHHHHHHHHHh------hhhHHHHHHHhhhhcCCCC-chHHHHHHHHHHHHHhchhhh
Q psy16159 73 SIMKPEQIA----ASAQEFQQGITRM------NMTDEMIDEALDDMLEGSD-DEQESNKIIDQVLGEIGIEIS 134 (175)
Q Consensus 73 ~~m~~~~l~----~~M~ef~ke~~~~------~i~~emm~d~~d~~~~~~~-~eee~d~~v~qVl~E~gl~~~ 134 (175)
+..++|+|. -.+..|.++|... |+...++.-. ...- +.+-++..+..|+.++|++.+
T Consensus 118 R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~kL-----s~~~P~~elv~~yL~EIA~ey~V~w~ 185 (193)
T 3ggy_A 118 FVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIKKC-----SPSVPKEELVDLYLKEIAKTYDVPYS 185 (193)
T ss_dssp GCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHHHH-----SCCCCCHHHHHHHHHHHHHHTTCCHH
T ss_pred cCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHHHc-----CCCCcCHHHHHHHHHHHHHHcCCCCC
Confidence 667888886 3455677777553 3333333332 1112 256677778888888877654
No 12
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=82.45 E-value=10 Score=29.45 Aligned_cols=126 Identities=7% Similarity=0.075 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHhc-CCHHH
Q psy16159 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMK-NTADTMKNMNSI-MKPEQ 79 (175)
Q Consensus 2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~-~~~~~M~~~n~~-m~~~~ 79 (175)
..+|-+..+.|..+.||+=++++||--+...=|--+---.+-+..|+.....+...-..+. .++.++=...+. -++|+
T Consensus 39 RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~~R~~li~~~k~cp~~l~EAvsslIyAa~R~~~elpE 118 (191)
T 3frr_A 39 RKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAAPRLQSEVAE 118 (191)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHSCSSCCGGGHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhcccccChH
Confidence 4578888999999999999999999999888776666666666666555544332222222 333456666665 78888
Q ss_pred HHH----HHHHHHHHHHHh------h-hhHHHHHHHhhhhcCCCCc-hHHHHHHHHHHHHHhchh
Q psy16159 80 IAA----SAQEFQQGITRM------N-MTDEMIDEALDDMLEGSDD-EQESNKIIDQVLGEIGIE 132 (175)
Q Consensus 80 l~~----~M~ef~ke~~~~------~-i~~emm~d~~d~~~~~~~~-eee~d~~v~qVl~E~gl~ 132 (175)
|.. ....|.++|... | +...++. -+. ..-| ++-++..+..|+.|+|++
T Consensus 119 L~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~-kLs----~~~P~~~lv~~yL~EIA~~y~V~ 178 (191)
T 3frr_A 119 LKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMH-KLS----VEAPPKILVERYLIEIAKNYNVP 178 (191)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHH-HTC----CSCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHH-HcC----CCCcCHHHHHHHHHHHHHHcCCC
Confidence 864 455577777654 1 2222222 222 1122 445566666666666544
No 13
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=69.25 E-value=1.5 Score=25.55 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.1
Q ss_pred CHHHHHHHHHcCChHHHHHHHHHHHH
Q psy16159 1 QELEIKKAAKEGDKIAATILAKQLIQ 26 (175)
Q Consensus 1 l~~~IKkaakkg~~~~arilAk~lvr 26 (175)
|+++|--|..+||.+++|.|-.+|=+
T Consensus 13 iEQqiyvA~seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 13 IRKQMDAAASKGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 46788899999999999999888743
No 14
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=66.94 E-value=26 Score=25.72 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16159 25 IQIRKQKTRTYAAQGKVHSIGIQNKTMGSNIKMAEAMKNTADTMKNMNSI 74 (175)
Q Consensus 25 vr~Rk~~~~l~~~ka~l~sv~~~l~~~~s~~~~~~~m~~~~~~M~~~n~~ 74 (175)
-..++...||-+...|+.+|..-+..=.-+..+...+..+..++..++..
T Consensus 49 ~~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~~ 98 (136)
T 4adz_A 49 KQKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFALQ 98 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788999999999999998888777888877777777777666654
No 15
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=65.27 E-value=28 Score=23.70 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHhc
Q psy16159 27 IRKQKTRTYAAQGKVHSIGIQNKTMG-SNIKMAEAMKNTADTMKNMNSI 74 (175)
Q Consensus 27 ~Rk~~~~l~~~ka~l~sv~~~l~~~~-s~~~~~~~m~~~~~~M~~~n~~ 74 (175)
.++..+||-+...|+.+|..-+..=. -+..+...+..+..++.+++..
T Consensus 13 k~~~l~RLkRieGQv~gI~rMiEe~~~~C~dIl~QlaAvr~Al~~~~~~ 61 (94)
T 3aai_A 13 REEARRRLLSAKGHLEGILRMLEDEKVYCVDVLKQLKAVEGALDRVGEM 61 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999888777 7788887777777777766654
No 16
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=63.42 E-value=4.1 Score=21.16 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHhhC
Q psy16159 161 SDAEIEAQLARLLG 174 (175)
Q Consensus 161 ~~ddL~~RL~~Lr~ 174 (175)
+.+||+.||..||.
T Consensus 9 eledlqerlrklrk 22 (27)
T 3twe_A 9 ELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35789999999884
No 17
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=63.34 E-value=14 Score=22.57 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=30.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q psy16159 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTY 35 (175)
Q Consensus 2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~ 35 (175)
+.-|+.|.+.|..+-+.+|..+|-.+..++.++-
T Consensus 15 ~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 15 TSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 4668999999999999999999998888887764
No 18
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=54.28 E-value=25 Score=22.86 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Q psy16159 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRTY 35 (175)
Q Consensus 2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l~ 35 (175)
+.-||.|-+.|..+-+.+|..+|-.+..++.++-
T Consensus 33 ~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 33 TSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 4668999999999999999999988888877653
No 19
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=44.74 E-value=39 Score=20.33 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHH
Q psy16159 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTR 33 (175)
Q Consensus 2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~ 33 (175)
+.-|+.|-+.|..+-+.+|-++|=.+..++.+
T Consensus 14 ~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 14 HSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999888887765
No 20
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=44.53 E-value=17 Score=22.92 Aligned_cols=54 Identities=11% Similarity=0.096 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHH
Q psy16159 75 MKPEQIAASAQEFQQGITRMNMTDEMIDEALDDMLEGSDDEQESNKIIDQVLGE 128 (175)
Q Consensus 75 m~~~~l~~~M~ef~ke~~~~~i~~emm~d~~d~~~~~~~~eee~d~~v~qVl~E 128 (175)
+|+.+|...+.++.--++..+=++|.+..+.+--..++-+|++-+.+++-.-+|
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de 54 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE 54 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence 467778888888888888888888888887653211123456666666554443
No 21
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=43.83 E-value=48 Score=20.83 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Q psy16159 2 ELEIKKAAKEGDKIAATILAKQLIQIRKQKTRT 34 (175)
Q Consensus 2 ~~~IKkaakkg~~~~arilAk~lvr~Rk~~~~l 34 (175)
+.-|+.|.+.|..+-+-+|..+|-.+..++.++
T Consensus 22 ~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~ 54 (59)
T 1z0j_B 22 KAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999998777766554
No 22
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G*
Probab=23.70 E-value=77 Score=25.55 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHh
Q psy16159 40 KVHSIGIQNKTMGSNIKMAEAMKNTADT-MKNMNS 73 (175)
Q Consensus 40 ~l~sv~~~l~~~~s~~~~~~~m~~~~~~-M~~~n~ 73 (175)
.|..+..|+.+..++.+++++|+-++.+ |++..+
T Consensus 2 ~lkeIk~RI~Svk~t~kITkAMkmVAaaKlrkaq~ 36 (278)
T 3oee_G 2 TLKEVEMRLKSIKNIEKITKTMKIVASTRLSKAEK 36 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888899999888855543 443333
No 23
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1}
Probab=22.87 E-value=82 Score=25.49 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy16159 40 KVHSIGIQNKTMGSNIKMAEAMKNTAD 66 (175)
Q Consensus 40 ~l~sv~~~l~~~~s~~~~~~~m~~~~~ 66 (175)
.|..+..|+.+..++.+++++|+-++.
T Consensus 2 ~lkeIk~RI~Svk~t~kITkAMkmVAa 28 (286)
T 3oaa_G 2 GAKEIRSKIASVQNTQKITKAMEMVAA 28 (286)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888885543
No 24
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=22.18 E-value=2e+02 Score=19.83 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=15.6
Q ss_pred CchHHHHHHHHHHHHHhchhhh----hhccCCCC
Q psy16159 113 DDEQESNKIIDQVLGEIGIEIS----GKMANAPT 142 (175)
Q Consensus 113 ~~eee~d~~v~qVl~E~gl~~~----~~l~~~p~ 142 (175)
+.+.|-+.+-...+++--++++ ..||.+|+
T Consensus 43 ELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~ 76 (104)
T 3um3_B 43 ELMAELEELEQEELDKNLLEISGPETVPLPNVPS 76 (104)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Confidence 4455666666666655322222 24666666
No 25
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=20.07 E-value=1.4e+02 Score=17.63 Aligned_cols=14 Identities=7% Similarity=0.268 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHh
Q psy16159 81 AASAQEFQQGITRM 94 (175)
Q Consensus 81 ~~~M~ef~ke~~~~ 94 (175)
+.++.+|.+|+.++
T Consensus 14 qEIL~E~RkElqK~ 27 (45)
T 1use_A 14 QELLEEVKKELQKV 27 (45)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57888888888876
Done!